AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586190 MtrunA17_Chr4g0001991 97.510 522 10 2 1 521 1 520 0.0 1038
Msa0586190 MtrunA17_Chr3g0099901 36.253 491 275 13 53 518 8 485 2.00e-80 259
Msa0586190 MtrunA17_Chr3g0099891 38.889 396 209 9 129 518 86 454 3.10e-80 258
Msa0586190 MtrunA17_Chr2g0291201 39.409 406 214 16 132 518 59 451 9.44e-72 235
Msa0586190 MtrunA17_Chr7g0275731 36.804 413 221 10 121 518 97 484 4.39e-71 234
Msa0586190 MtrunA17_Chr1g0212321 35.714 406 229 10 124 518 102 486 1.44e-69 231
Msa0586190 MtrunA17_Chr1g0165201 35.616 365 213 6 163 518 118 469 1.01e-67 225
Msa0586190 MtrunA17_Chr3g0130931 36.000 400 219 14 135 518 70 448 4.57e-65 218
Msa0586190 MtrunA17_Chr6g0484901 33.253 415 243 9 120 518 95 491 6.94e-65 218
Msa0586190 MtrunA17_Chr1g0210201 35.878 393 225 8 135 518 93 467 4.33e-64 216
Msa0586190 MtrunA17_Chr3g0095891 34.286 385 225 12 156 518 80 458 1.52e-59 203
Msa0586190 MtrunA17_Chr5g0442921 33.673 392 229 12 152 519 170 554 2.89e-57 199
Msa0586190 MtrunA17_Chr5g0419291 33.611 360 206 13 174 518 87 428 6.42e-52 182
Msa0586190 MtrunA17_Chr5g0435871 31.781 365 215 13 174 521 90 437 1.05e-46 168
Msa0586190 MtrunA17_Chr8g0352671 33.243 367 205 14 174 519 90 437 1.10e-46 168
Msa0586190 MtrunA17_Chr2g0310831 31.829 421 241 14 121 519 45 441 2.48e-46 167
Msa0586190 MtrunA17_Chr8g0386441 33.056 360 211 14 174 519 87 430 1.14e-45 166
Msa0586190 MtrunA17_Chr5g0435971 31.781 365 215 13 174 521 87 434 1.45e-45 165
Msa0586190 MtrunA17_Chr5g0395911 31.807 415 235 15 129 519 24 414 1.74e-45 164
Msa0586190 MtrunA17_Chr5g0415951 31.956 363 214 13 174 519 89 435 3.40e-45 164
Msa0586190 MtrunA17_Chr2g0310821 29.124 491 285 17 40 519 5 443 2.19e-44 162
Msa0586190 MtrunA17_Chr8g0390761 31.389 360 221 9 156 505 99 442 4.80e-44 161
Msa0586190 MtrunA17_Chr2g0310801 31.010 416 245 14 121 519 44 434 2.18e-43 159
Msa0586190 MtrunA17_Chr2g0307991 32.258 403 216 17 145 519 32 405 2.39e-43 159
Msa0586190 MtrunA17_Chr2g0308001 31.075 428 249 18 116 519 4 409 5.88e-43 158
Msa0586190 MtrunA17_Chr2g0333991 32.520 369 221 15 164 517 79 434 1.14e-42 157
Msa0586190 MtrunA17_Chr2g0311451 32.884 371 221 15 164 519 79 436 8.59e-42 155
Msa0586190 MtrunA17_Chr8g0352661 32.075 371 211 15 174 521 87 439 1.32e-41 154
Msa0586190 MtrunA17_Chr1g0164401 32.626 377 210 14 161 519 79 429 2.46e-41 154
Msa0586190 MtrunA17_Chr3g0087851 30.220 364 220 13 174 519 90 437 2.49e-41 154
Msa0586190 MtrunA17_Chr6g0487471 28.429 401 257 10 135 519 49 435 3.24e-41 153
Msa0586190 MtrunA17_Chr5g0395931 30.100 402 247 12 136 519 51 436 3.23e-39 148
Msa0586190 MtrunA17_Chr3g0133071 32.918 401 235 14 133 518 56 437 6.18e-39 147
Msa0586190 MtrunA17_Chr4g0061641 33.048 351 196 11 186 519 69 397 7.25e-39 146
Msa0586190 MtrunA17_Chr6g0486981 28.469 418 265 15 122 519 34 437 9.56e-39 147
Msa0586190 MtrunA17_Chr8g0353261 30.732 410 247 16 124 519 48 434 1.58e-38 146
Msa0586190 MtrunA17_Chr5g0395871 31.335 367 210 15 173 519 81 425 3.97e-36 139
Msa0586190 MtrunA17_Chr7g0267171 28.899 436 248 16 130 518 45 465 3.82e-35 137
Msa0586190 MtrunA17_Chr5g0399171 28.571 420 231 19 159 521 65 472 4.68e-35 137
Msa0586190 MtrunA17_Chr6g0457401 30.025 403 248 12 135 519 51 437 3.80e-34 134
Msa0586190 MtrunA17_Chr4g0056211 27.619 420 234 17 158 519 64 471 7.97e-32 128
Msa0586190 MtrunA17_Chr3g0112051 29.101 378 201 14 171 520 73 411 1.68e-31 126
Msa0586190 MtrunA17_Chr7g0249451 27.907 430 250 19 129 519 23 431 2.00e-31 127
Msa0586190 MtrunA17_Chr3g0082281 35.000 280 160 9 251 519 52 320 5.75e-31 122
Msa0586190 MtrunA17_Chr7g0239001 31.250 384 217 18 171 521 59 428 6.48e-31 124
Msa0586190 MtrunA17_Chr2g0307461 29.219 397 220 17 143 505 48 417 7.04e-31 124
Msa0586190 MtrunA17_Chr5g0401601 30.303 363 214 15 178 519 95 439 4.33e-30 124
Msa0586190 MtrunA17_Chr1g0189381 29.306 389 224 17 164 519 60 430 4.33e-30 123
Msa0586190 MtrunA17_Chr4g0023351 30.945 307 179 12 116 406 4 293 2.40e-29 117
Msa0586190 MtrunA17_Chr3g0110191 27.441 379 210 19 176 519 91 439 5.99e-29 119
Msa0586190 MtrunA17_Chr7g0221681 26.859 417 251 17 140 519 35 434 9.51e-29 119
Msa0586190 MtrunA17_Chr5g0434411 27.882 373 232 15 171 519 79 438 6.78e-27 113
Msa0586190 MtrunA17_Chr4g0053721 28.571 364 219 15 178 519 87 431 3.02e-26 112
Msa0586190 MtrunA17_Chr4g0027681 29.178 377 215 18 176 520 82 438 1.97e-25 109
Msa0586190 MtrunA17_Chr5g0395891 31.068 309 181 12 227 519 21 313 9.65e-24 102
Msa0586190 MtrunA17_Chr1g0179751 28.833 437 249 22 122 520 59 471 3.45e-23 102
Msa0586190 MtrunA17_Chr6g0484731 27.041 392 243 17 155 518 174 550 2.46e-22 100
Msa0586190 MtrunA17_Chr5g0419151 31.343 268 164 9 263 519 110 368 2.48e-22 98.6
Msa0586190 MtrunA17_Chr2g0312941 25.000 400 243 14 153 516 73 451 2.49e-22 99.8
Msa0586190 MtrunA17_Chr2g0320621 29.759 373 197 18 187 520 93 439 1.45e-21 97.8
Msa0586190 MtrunA17_Chr7g0265331 28.877 374 220 18 176 520 86 442 5.83e-21 95.9
Msa0586190 MtrunA17_Chr3g0124421 25.455 440 270 17 106 518 42 450 1.13e-20 95.1
Msa0586190 MtrunA17_Chr2g0309561 26.580 459 248 21 129 518 70 508 1.19e-20 95.1
Msa0586190 MtrunA17_Chr1g0179091 26.685 356 213 12 173 519 51 367 1.85e-20 93.2
Msa0586190 MtrunA17_Chr3g0130741 26.810 373 228 21 173 521 86 437 9.79e-20 92.0
Msa0586190 MtrunA17_Chr8g0371351 27.467 375 216 17 174 518 101 449 1.63e-17 85.5
Msa0586190 MtrunA17_Chr8g0352691 30.855 269 166 10 261 519 2 260 2.01e-17 82.4
Msa0586190 MtrunA17_Chr5g0434441 25.538 372 244 15 171 519 66 427 2.99e-17 84.3
Msa0586190 MtrunA17_Chr1g0159791 25.474 369 234 15 176 521 62 412 3.33e-17 84.0
Msa0586190 MtrunA17_Chr5g0425141 24.198 405 253 18 142 518 71 449 1.05e-16 82.8
Msa0586190 MtrunA17_Chr1g0185661 26.579 380 205 18 185 514 60 415 2.16e-16 82.8
Msa0586190 MtrunA17_Chr8g0352681 33.913 115 72 3 135 246 50 163 1.46e-15 74.7
Msa0586190 MtrunA17_Chr4g0065581 24.178 426 225 19 161 514 39 438 2.13e-15 78.6
Msa0586190 MtrunA17_Chr2g0287821 25.197 381 211 20 185 514 82 439 3.67e-14 74.7
Msa0586190 MtrunA17_Chr1g0185651 24.627 402 222 16 171 514 54 432 2.57e-12 68.9
Msa0586190 MtrunA17_Chr2g0287811 23.393 389 232 15 174 514 40 410 2.17e-11 65.9
Msa0586190 MtrunA17_Chr2g0287781 23.670 376 221 12 176 505 41 396 7.44e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586190 AT1G79720.1 58.255 424 171 4 99 518 61 482 5.50e-171 492
Msa0586190 AT5G10770.1 43.467 398 207 10 129 519 88 474 5.03e-97 302
Msa0586190 AT5G10760.1 38.795 415 226 12 111 518 71 464 3.41e-76 248
Msa0586190 AT3G18490.1 34.633 436 245 12 106 518 82 500 1.35e-68 229
Msa0586190 AT3G61820.1 35.904 415 235 10 121 518 83 483 2.21e-68 228
Msa0586190 AT1G25510.1 37.028 424 234 12 107 518 81 483 5.34e-68 227
Msa0586190 AT3G20015.1 33.103 435 262 9 96 518 53 470 1.51e-67 225
Msa0586190 AT1G01300.1 35.990 414 230 13 121 519 92 485 2.52e-67 225
Msa0586190 AT3G59080.1 34.949 392 225 14 154 521 150 535 1.43e-56 197
Msa0586190 AT2G42980.1 34.856 416 234 16 137 521 118 527 2.95e-56 197
Msa0586190 AT2G03200.1 35.519 366 203 12 173 518 106 458 1.75e-55 193
Msa0586190 AT1G09750.1 34.584 373 214 12 161 518 91 448 4.60e-49 176
Msa0586190 AT3G54400.1 32.891 377 210 13 161 519 74 425 3.65e-47 170
Msa0586190 AT1G64830.1 33.795 361 207 14 174 519 86 429 9.60e-45 163
Msa0586190 AT3G59080.2 31.888 392 201 13 154 521 150 499 3.24e-44 163
Msa0586190 AT5G33340.1 31.566 396 245 11 135 519 55 435 3.85e-44 162
Msa0586190 AT1G31450.1 30.958 407 245 14 137 519 48 442 3.72e-43 159
Msa0586190 AT2G35615.1 32.452 416 237 16 130 519 47 444 1.43e-42 157
Msa0586190 AT3G25700.1 30.077 389 239 13 159 520 69 451 3.97e-42 157
Msa0586190 AT5G07030.1 29.647 425 243 16 115 519 67 455 1.97e-41 155
Msa0586190 AT4G30030.1 29.742 427 217 18 144 521 30 422 1.89e-38 146
Msa0586190 AT2G28040.2 29.144 374 223 12 157 519 40 382 2.15e-36 139
Msa0586190 AT2G28040.1 28.608 388 235 12 143 519 35 391 2.39e-36 139
Msa0586190 AT5G36260.1 27.990 418 240 18 140 519 40 434 3.48e-36 140
Msa0586190 AT2G28010.1 29.692 357 211 9 174 519 65 392 2.11e-35 137
Msa0586190 AT4G30040.1 27.896 423 239 17 121 513 41 427 2.27e-35 137
Msa0586190 AT5G02190.1 31.733 375 201 19 183 518 84 442 4.15e-34 134
Msa0586190 AT2G28030.1 30.294 340 199 9 189 519 78 388 5.54e-34 133
Msa0586190 AT3G02740.1 30.332 422 237 21 131 519 43 440 2.41e-32 130
Msa0586190 AT3G52500.1 30.102 392 215 13 174 519 90 468 3.08e-32 129
Msa0586190 AT2G28225.1 30.411 365 202 14 174 519 67 398 1.47e-31 126
Msa0586190 AT5G45120.1 30.070 429 231 21 153 518 56 478 1.22e-30 125
Msa0586190 AT3G02740.2 30.423 378 209 18 174 519 10 365 6.06e-30 122
Msa0586190 AT2G23945.1 27.384 409 246 16 135 518 66 448 9.77e-30 122
Msa0586190 AT2G28220.1 29.396 364 207 12 174 519 67 398 1.93e-29 120
Msa0586190 AT5G43100.2 29.006 362 216 13 178 521 82 420 3.61e-29 120
Msa0586190 AT5G43100.1 29.006 362 216 13 178 521 82 420 4.80e-29 121
Msa0586190 AT2G39710.1 28.307 378 222 16 171 514 64 426 1.44e-28 118
Msa0586190 AT1G65240.1 25.926 405 242 17 150 519 46 427 3.50e-28 117
Msa0586190 AT1G66180.1 26.862 376 223 15 176 521 76 429 2.80e-27 114
Msa0586190 AT1G05840.1 26.353 425 252 17 136 519 35 439 2.83e-27 115
Msa0586190 AT3G12700.1 26.603 421 254 18 127 519 68 461 6.06e-27 114
Msa0586190 AT3G50050.1 28.611 360 218 16 178 519 99 437 1.29e-26 114
Msa0586190 AT5G37540.1 28.075 374 225 16 176 521 84 441 1.49e-26 112
Msa0586190 AT2G36670.2 26.573 429 263 18 124 519 49 458 6.94e-24 105
Msa0586190 AT2G36670.1 26.559 433 261 18 125 519 50 463 9.67e-24 105
Msa0586190 AT1G49050.2 27.019 359 221 17 189 518 49 395 2.62e-23 102
Msa0586190 AT2G36670.4 28.075 374 220 16 176 519 38 392 1.14e-22 101
Msa0586190 AT2G36670.3 28.075 374 220 16 176 519 38 392 1.14e-22 101
Msa0586190 AT1G49050.1 27.019 359 221 17 189 518 222 568 1.39e-22 102
Msa0586190 AT1G08210.3 29.600 375 214 16 176 520 136 490 3.39e-22 100
Msa0586190 AT1G08210.4 29.600 375 214 16 176 520 122 476 3.69e-22 100
Msa0586190 AT4G12920.1 25.722 381 246 12 150 518 32 387 4.94e-22 98.6
Msa0586190 AT1G08210.1 29.600 375 214 16 176 520 88 442 5.84e-22 99.4
Msa0586190 AT5G22850.1 27.614 373 221 15 178 519 87 441 1.55e-20 95.1
Msa0586190 AT5G10080.1 26.620 432 257 21 116 518 53 453 2.60e-20 94.7
Msa0586190 AT5G24820.1 31.429 245 150 10 281 518 166 399 6.80e-20 92.4
Msa0586190 AT3G51360.9 27.873 409 242 22 137 518 63 445 2.30e-19 91.7
Msa0586190 AT3G51360.1 27.873 409 242 22 137 518 53 435 2.60e-19 91.3
Msa0586190 AT1G08210.2 27.930 401 214 16 176 520 88 469 1.08e-18 89.7
Msa0586190 AT4G16563.1 26.949 449 239 18 145 519 59 492 1.20e-18 89.4
Msa0586190 AT1G77480.2 26.330 376 223 19 174 518 67 419 2.56e-18 87.8
Msa0586190 AT4G35880.1 27.027 370 220 17 174 518 107 451 3.86e-18 87.8
Msa0586190 AT1G49050.3 30.380 237 141 13 189 412 222 447 4.02e-18 87.4
Msa0586190 AT1G77480.1 26.330 376 223 19 174 518 67 419 4.69e-18 87.4
Msa0586190 AT3G51360.7 29.032 372 217 21 171 518 3 351 9.26e-18 85.9
Msa0586190 AT2G17760.1 25.424 413 244 21 134 518 73 449 1.40e-17 86.3
Msa0586190 AT3G42550.1 26.810 373 205 17 165 520 70 391 2.75e-17 84.7
Msa0586190 AT3G51360.6 27.676 383 226 20 137 493 63 420 4.73e-15 77.8
Msa0586190 AT3G51360.10 27.676 383 226 20 137 493 53 410 7.26e-15 77.4
Msa0586190 AT4G35880.2 27.577 359 204 18 174 501 107 440 8.76e-15 77.0
Msa0586190 AT3G51340.1 25.390 449 249 24 125 518 42 459 5.24e-14 75.1
Msa0586190 AT3G51360.5 27.348 362 213 19 137 473 63 399 5.76e-14 74.3
Msa0586190 AT3G51360.4 27.348 362 213 19 137 473 53 389 7.83e-14 73.9
Msa0586190 AT1G03220.1 26.190 378 209 17 186 514 58 414 2.50e-13 72.4
Msa0586190 AT1G44130.1 24.747 396 235 20 157 518 33 399 2.78e-13 72.0
Msa0586190 AT3G51340.3 26.462 359 193 20 125 439 42 373 6.69e-13 70.9
Msa0586190 AT3G51360.2 29.766 299 162 17 137 412 63 336 8.30e-13 70.1
Msa0586190 AT3G51340.4 26.536 358 192 20 125 438 42 372 8.37e-13 70.5
Msa0586190 AT3G25700.2 31.429 140 86 4 159 289 69 207 1.13e-12 69.7
Msa0586190 AT3G51350.1 26.316 304 176 16 176 453 106 387 1.55e-11 67.0
Msa0586190 AT3G51360.3 27.812 320 194 18 213 518 13 309 1.90e-11 66.2
Msa0586190 AT3G51360.8 27.812 320 194 18 213 518 13 309 1.90e-11 66.2
Msa0586190 AT5G48430.1 25.641 234 152 9 298 514 161 389 5.78e-11 65.1

Find 131 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACCAGCGCTTTCAATTT+TGG 0.116640 4_2:+7296383 Msa0586190:CDS
TTCCCTTGCAAATCCAATTT+TGG 0.138834 4_2:-7296634 None:intergenic
ATTAGCTTCTGGTATAAATT+TGG 0.167225 4_2:+7295594 Msa0586190:CDS
GGTTTATTTGGCGGAGTTTC+CGG 0.173823 4_2:+7295988 Msa0586190:CDS
TACCAGAAGCTAATGGAATT+TGG 0.188959 4_2:-7295585 None:intergenic
CTGCTAAACTCACTTGATTC+TGG 0.197254 4_2:-7294827 None:intergenic
GCTCAAAGAGGAAAATTAAT+TGG 0.217816 4_2:+7295449 Msa0586190:CDS
CTGTAGTAAATTGAAGATTT+TGG 0.227131 4_2:-7295804 None:intergenic
ATCACTCTACAATGCTTTAA+AGG 0.230293 4_2:+7296326 Msa0586190:CDS
ACTTGTGCATGAGGAATTAT+TGG 0.230427 4_2:-7294486 None:intergenic
AGATTCTGAGTGGTGGAATT+TGG 0.234300 4_2:-7294548 None:intergenic
AGGAACAACAAAGGTTTATT+TGG 0.239871 4_2:+7295976 Msa0586190:CDS
CAAACTTGTGAAACATCTTT+TGG 0.244817 4_2:-7296516 None:intergenic
GCTTCTGGTTCGTTAGTTAT+AGG 0.255179 4_2:+7296111 Msa0586190:CDS
TTGCAAAGGAACCATCAATT+TGG 0.275677 4_2:+7294785 Msa0586190:CDS
GATGCCAAACAGTCCAAAAT+TGG 0.277573 4_2:+7296621 Msa0586190:CDS
TGTAACTACACTGTTAATTA+TGG 0.278665 4_2:+7295865 Msa0586190:CDS
GCATAAGAATGGCATTTATC+AGG 0.289129 4_2:+7296827 Msa0586190:three_prime_UTR
TTATAGGAAGAGGAGTTAGA+AGG 0.297373 4_2:-7295754 None:intergenic
ATTGCATAGTAATGAGTTAT+AGG 0.299729 4_2:-7295770 None:intergenic
TATGCTAGTACCATGTTATA+AGG 0.302392 4_2:-7296809 None:intergenic
TGGCGGAGTTTCCGGTATAA+TGG 0.306505 4_2:+7295996 Msa0586190:CDS
AACCTCTATCCTTCATTTCC+AGG 0.323356 4_2:-7295423 None:intergenic
TCCAATTGCTTACACCAGTA+TGG 0.324069 4_2:+7296164 Msa0586190:CDS
CTTGTGCATGAGGAATTATT+GGG 0.332740 4_2:-7294485 None:intergenic
TTAAACTACATTGTGACAAT+AGG 0.336630 4_2:+7295622 Msa0586190:CDS
CTTTACTTTATCATTGCAAA+TGG 0.351371 4_2:+7294722 Msa0586190:CDS
GGCGGCATTCTAATTGATTC+GGG 0.357040 4_2:+7296279 Msa0586190:CDS
GGCGGAGTTTCCGGTATAAT+GGG 0.359276 4_2:+7295997 Msa0586190:CDS
GGTGTTGAACACCTTAGTTT+TGG 0.364925 4_2:+7295916 Msa0586190:CDS
AACCCTTTGAACCAAATTGA+TGG 0.374016 4_2:-7294796 None:intergenic
GTTTCCGGTATAATGGGATT+AGG 0.374940 4_2:+7296003 Msa0586190:CDS
TCTCAAACCAATACTACATT+TGG 0.375336 4_2:+7296048 Msa0586190:CDS
ATCCAAATTCCATTAGCTTC+TGG 0.382267 4_2:+7295583 Msa0586190:CDS
AGATGTTTCACAAGTTTGTT+TGG 0.383515 4_2:+7296521 Msa0586190:CDS
CGGCGGCATTCTAATTGATT+CGG 0.391462 4_2:+7296278 Msa0586190:CDS
GTTCTCAAAATGCATACTTA+AGG 0.391586 4_2:-7296451 None:intergenic
TCCTAGGTATATTGTTGTGT+TGG 0.394898 4_2:+7296853 Msa0586190:three_prime_UTR
AACCATCAATTTGGTTCAAA+GGG 0.397366 4_2:+7294794 Msa0586190:CDS
TTTACTTTATCATTGCAAAT+GGG 0.400260 4_2:+7294723 Msa0586190:CDS
GCGTTCGTTCAATGCAAAAC+AGG 0.405597 4_2:+7295512 Msa0586190:CDS
GACCCATGTTAAGTCACTTC+CGG 0.405924 4_2:-7295680 None:intergenic
ACAACAGATAGTGGAGCTTC+TGG 0.413420 4_2:+7296096 Msa0586190:CDS
ACAGTGTAGTTACAACTAGA+TGG 0.419587 4_2:-7295856 None:intergenic
TGCTAAACTCACTTGATTCT+GGG 0.420600 4_2:-7294826 None:intergenic
GATACATGTTTCAATCTGAC+TGG 0.429219 4_2:+7296405 Msa0586190:CDS
ACCATACTGGTGTAAGCAAT+TGG 0.433713 4_2:-7296165 None:intergenic
TACATTCTAACGACTAATGA+AGG 0.435890 4_2:-7296946 None:intergenic
AACTCCTCCAAATGTAGTAT+TGG 0.435957 4_2:-7296055 None:intergenic
TATAGGAAGAGGAGTTAGAA+GGG 0.438177 4_2:-7295753 None:intergenic
CAAAATCTTCAATTTACTAC+AGG 0.450090 4_2:+7295805 Msa0586190:CDS
TGGTTTGAGATATCATTGAT+AGG 0.450378 4_2:-7296035 None:intergenic
GAAAATGACATGGCCATCAT+TGG 0.451254 4_2:+7296564 Msa0586190:CDS
AAATTTATACCAGAAGCTAA+TGG 0.452517 4_2:-7295592 None:intergenic
GAGTTAGAAGGGTTGAAAAC+AGG 0.454527 4_2:-7295742 None:intergenic
GAACCATCAATTTGGTTCAA+AGG 0.454718 4_2:+7294793 Msa0586190:CDS
TTTCAATCTGACTGGGATTG+AGG 0.457854 4_2:+7296413 Msa0586190:CDS
ATTGAAAGCGCTGGTGCAGT+AGG 0.468332 4_2:-7296378 None:intergenic
TGCTATCATCCTGGAAATGA+AGG 0.473597 4_2:+7295414 Msa0586190:CDS
CTACATTGTGACAATAGGAT+TGG 0.476581 4_2:+7295627 Msa0586190:CDS
CTGAAATACCTCCAAAACTA+AGG 0.477800 4_2:-7295927 None:intergenic
TTTGAGAGTGAGAGTGAGAG+AGG 0.478223 4_2:-7294582 None:intergenic
GAAGCTCCACTATCTGTTGT+TGG 0.483250 4_2:-7296093 None:intergenic
TGTTTACCAACAACAGATAG+TGG 0.485285 4_2:+7296087 Msa0586190:CDS
TTGCTGATAATTCCCAATGA+TGG 0.485574 4_2:-7296577 None:intergenic
AACAACAAAGGTTTATTTGG+CGG 0.485648 4_2:+7295979 Msa0586190:CDS
TAGTAATGAGTTATAGGAAG+AGG 0.486105 4_2:-7295764 None:intergenic
GCTATACAAGATACAAGCTT+TGG 0.488883 4_2:+7296252 Msa0586190:CDS
AATAATTCCTCATGCACAAG+TGG 0.503365 4_2:+7294488 Msa0586190:five_prime_UTR
CTGTGGATTCGAAACCATAC+TGG 0.504481 4_2:-7296178 None:intergenic
AAAATGACATGGCCATCATT+GGG 0.506693 4_2:+7296565 Msa0586190:CDS
TACATTGTGACAATAGGATT+GGG 0.507768 4_2:+7295628 Msa0586190:CDS
TACACTGTTAATTATGGTGA+TGG 0.513189 4_2:+7295871 Msa0586190:CDS
TCTTCCTAATCCCATTATAC+CGG 0.514997 4_2:-7296007 None:intergenic
TTTAAAGCATTGTAGAGTGA+TGG 0.518382 4_2:-7296324 None:intergenic
AGTCCAAAATTGGATTTGCA+AGG 0.526949 4_2:+7296631 Msa0586190:CDS
AGAGAGGAGATTCTGAGTGG+TGG 0.529729 4_2:-7294555 None:intergenic
GGAGAAAGGTGCTATCATCC+TGG 0.532708 4_2:+7295405 Msa0586190:CDS
CAAACCAATACTACATTTGG+AGG 0.533626 4_2:+7296051 Msa0586190:CDS
TCATTTACTGATGGAGAGCT+AGG 0.535270 4_2:+7295895 Msa0586190:CDS
TACTTTATCATTGCAAATGG+GGG 0.538295 4_2:+7294725 Msa0586190:CDS
AGGATTCGAGCAAAGGTCAC+TGG 0.542029 4_2:+7295532 Msa0586190:CDS
ACATGGTACTAGCATAAGAA+TGG 0.545030 4_2:+7296816 Msa0586190:three_prime_UTR
GTATACCCCACTTGTGCATG+AGG 0.547445 4_2:-7294495 None:intergenic
ATCCTGGAAATGAAGGATAG+AGG 0.549194 4_2:+7295421 Msa0586190:CDS
GCAAAACAGGATTCGAGCAA+AGG 0.549551 4_2:+7295525 Msa0586190:CDS
TTACTTTATCATTGCAAATG+GGG 0.552454 4_2:+7294724 Msa0586190:CDS
GGGGACGGTGATCACGAGAC+TGG 0.553312 4_2:+7296299 Msa0586190:CDS
ATTTGGCATGAGAACAAAAG+AGG 0.553530 4_2:-7294531 None:intergenic
ACATAAAAGTTTGACAGCTG+TGG 0.554888 4_2:-7296195 None:intergenic
GCTATACTAGATGTCTTACA+TGG 0.558943 4_2:+7296687 Msa0586190:three_prime_UTR
GTATCCAAAATTGAAAGCGC+TGG 0.559484 4_2:-7296387 None:intergenic
AATGGAAGTAGTAAGAAAGA+AGG 0.561935 4_2:-7294609 None:intergenic
ATACATGTTTCAATCTGACT+GGG 0.569669 4_2:+7296406 Msa0586190:CDS
GTCCAAAATTGGATTTGCAA+GGG 0.571372 4_2:+7296632 Msa0586190:CDS
CTATGTTTAGCCTTATAACA+TGG 0.585435 4_2:+7296799 Msa0586190:three_prime_UTR
TCAAAATGCATACTTAAGGT+AGG 0.585670 4_2:-7296447 None:intergenic
TTGAAAGCGCTGGTGCAGTA+GGG 0.585756 4_2:-7296377 None:intergenic
GGTGATGGATCATTTACTGA+TGG 0.587322 4_2:+7295886 Msa0586190:CDS
TCAAAGTGCAAATGTTGCAA+AGG 0.591098 4_2:+7294771 Msa0586190:CDS
AACCTCACCGGCATAGATGT+TGG 0.592272 4_2:+7296222 Msa0586190:CDS
ATACCGGAAGTGACTTAACA+TGG 0.592681 4_2:+7295677 Msa0586190:CDS
CACACCACCAACATCTATGC+CGG 0.596117 4_2:-7296229 None:intergenic
ATGACTGTGATAATCGATAC+CGG 0.597232 4_2:+7295661 Msa0586190:CDS
ATTATCAGCAAAGGAATCAG+AGG 0.598713 4_2:+7296589 Msa0586190:CDS
CATTCTAATTGATTCGGGGA+CGG 0.599880 4_2:+7296284 Msa0586190:CDS
AGTTATAGGTAACGAGTCGT+CGG 0.608924 4_2:+7296125 Msa0586190:CDS
ATAATTCCTCATGCACAAGT+GGG 0.612413 4_2:+7294489 Msa0586190:five_prime_UTR
CGGCATAGATGTTGGTGGTG+TGG 0.619156 4_2:+7296230 Msa0586190:CDS
GATACAAGCTTTGGCAACGG+CGG 0.621391 4_2:+7296261 Msa0586190:CDS
GGTTGTGGTAGGAACAACAA+AGG 0.627341 4_2:+7295967 Msa0586190:CDS
ACATTCTAACGACTAATGAA+GGG 0.629925 4_2:-7296945 None:intergenic
TGACTATAACATGACATACA+AGG 0.632056 4_2:-7295712 None:intergenic
ATGACATACAAGGATCACAT+TGG 0.633313 4_2:-7295702 None:intergenic
TCATTGGGAATTATCAGCAA+AGG 0.636393 4_2:+7296580 Msa0586190:CDS
CTCACCGGCATAGATGTTGG+TGG 0.638961 4_2:+7296225 Msa0586190:CDS
GCCAACACAACAATATACCT+AGG 0.649059 4_2:-7296854 None:intergenic
CAAGATACAAGCTTTGGCAA+CGG 0.651619 4_2:+7296258 Msa0586190:CDS
TTGTGCATGAGGAATTATTG+GGG 0.654243 4_2:-7294484 None:intergenic
GATCTGAATGTGGATGCAGT+TGG 0.657282 4_2:+7296480 Msa0586190:CDS
TTATCAGCAAAGGAATCAGA+GGG 0.658240 4_2:+7296590 Msa0586190:CDS
ATAGAGGTTATTGCTCAAAG+AGG 0.659200 4_2:+7295437 Msa0586190:CDS
AAAAGAGAGGAGATTCTGAG+TGG 0.664323 4_2:-7294558 None:intergenic
GAACAATGTTGATCTGAATG+TGG 0.668148 4_2:+7296470 Msa0586190:CDS
ATGTCATGTTATAGTCAACA+AGG 0.669193 4_2:+7295718 Msa0586190:CDS
TCTTTCTGATGAAAATGACA+TGG 0.672995 4_2:+7296554 Msa0586190:CDS
TAATTCCTCATGCACAAGTG+GGG 0.678160 4_2:+7294490 Msa0586190:five_prime_UTR
GCGGCATTCTAATTGATTCG+GGG 0.686863 4_2:+7296280 Msa0586190:CDS
TACCGGAAGTGACTTAACAT+GGG 0.691503 4_2:+7295678 Msa0586190:CDS
CACCAACATCTATGCCGGTG+AGG 0.705570 4_2:-7296224 None:intergenic
TAAACTCACTTGATTCTGGG+AGG 0.709976 4_2:-7294823 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATGTGATTTTTTA+TGG + chr4_2:7294852-7294871 Msa0586190:intron 10.0%
!! AAAACAAAAGAAAGAAAAAA+TGG - chr4_2:7294701-7294720 None:intergenic 15.0%
!!! ATTTTTTTCAAATTTCACAT+TGG + chr4_2:7294889-7294908 Msa0586190:intron 15.0%
!!! ATATCTTCTTTTAATACTTT+CGG - chr4_2:7295200-7295219 None:intergenic 15.0%
!! GAAAAAGAGAAAAATTCTAA+TGG - chr4_2:7294630-7294649 None:intergenic 20.0%
!! TTTACTTTATCATTGCAAAT+GGG + chr4_2:7294723-7294742 Msa0586190:CDS 20.0%
!! AGATTCTTATAACAGTAAAA+AGG - chr4_2:7294944-7294963 None:intergenic 20.0%
!!! TATCTTCTTTTAATACTTTC+GGG - chr4_2:7295199-7295218 None:intergenic 20.0%
!! ACAACATTAGAGATTTAAAA+TGG - chr4_2:7295305-7295324 None:intergenic 20.0%
!!! TTCTTTGAATCTGAATTTTT+AGG + chr4_2:7295379-7295398 Msa0586190:intron 20.0%
!!! TCAGTTAGTAATTTTGTTTT+TGG + chr4_2:7295946-7295965 Msa0586190:CDS 20.0%
!!! TGTATATAAATTTTCGTAGT+AGG - chr4_2:7296772-7296791 None:intergenic 20.0%
!! TTACTCTTTTCACAAATTCA+TGG + chr4_2:7294652-7294671 Msa0586190:CDS 25.0%
! CTTTACTTTATCATTGCAAA+TGG + chr4_2:7294722-7294741 Msa0586190:CDS 25.0%
! TTACTTTATCATTGCAAATG+GGG + chr4_2:7294724-7294743 Msa0586190:CDS 25.0%
!! ATCTTCTTTTAATACTTTCG+GGG - chr4_2:7295198-7295217 None:intergenic 25.0%
! TATTATCTTGGAAATGAGAA+AGG + chr4_2:7295341-7295360 Msa0586190:intron 25.0%
!!! TGAATCTGAATTTTTAGGAA+AGG + chr4_2:7295384-7295403 Msa0586190:intron 25.0%
! AAATTTATACCAGAAGCTAA+TGG - chr4_2:7295595-7295614 None:intergenic 25.0%
!! ATTAGCTTCTGGTATAAATT+TGG + chr4_2:7295594-7295613 Msa0586190:CDS 25.0%
! TTAAACTACATTGTGACAAT+AGG + chr4_2:7295622-7295641 Msa0586190:CDS 25.0%
! ATTGCATAGTAATGAGTTAT+AGG - chr4_2:7295773-7295792 None:intergenic 25.0%
!! CTGTAGTAAATTGAAGATTT+TGG - chr4_2:7295807-7295826 None:intergenic 25.0%
! CAAAATCTTCAATTTACTAC+AGG + chr4_2:7295805-7295824 Msa0586190:CDS 25.0%
! TGTAACTACACTGTTAATTA+TGG + chr4_2:7295865-7295884 Msa0586190:CDS 25.0%
!!! AGTAATTTTGTTTTTGGTTG+TGG + chr4_2:7295952-7295971 Msa0586190:CDS 25.0%
AATGGAAGTAGTAAGAAAGA+AGG - chr4_2:7294612-7294631 None:intergenic 30.0%
TACTTTATCATTGCAAATGG+GGG + chr4_2:7294725-7294744 Msa0586190:CDS 30.0%
! AACCATCAATTTGGTTCAAA+GGG + chr4_2:7294794-7294813 Msa0586190:CDS 30.0%
!! TGATGGGTGTTTTCTATAAA+GGG - chr4_2:7294981-7295000 None:intergenic 30.0%
!!! ATGATGGGTGTTTTCTATAA+AGG - chr4_2:7294982-7295001 None:intergenic 30.0%
TTATAGAAAACACCCATCAT+TGG + chr4_2:7294982-7295001 Msa0586190:intron 30.0%
ACAGATAAGAAACCAATGAT+GGG - chr4_2:7294997-7295016 None:intergenic 30.0%
CTCATAGTTTACTGATAAGT+GGG - chr4_2:7295171-7295190 None:intergenic 30.0%
ACTCATAGTTTACTGATAAG+TGG - chr4_2:7295172-7295191 None:intergenic 30.0%
! GTTCATAAGTGCTATTATCT+TGG + chr4_2:7295329-7295348 Msa0586190:intron 30.0%
!! GAATTTTTAGGAAAGGAGAA+AGG + chr4_2:7295391-7295410 Msa0586190:intron 30.0%
GCTCAAAGAGGAAAATTAAT+TGG + chr4_2:7295449-7295468 Msa0586190:CDS 30.0%
TACATTGTGACAATAGGATT+GGG + chr4_2:7295628-7295647 Msa0586190:CDS 30.0%
TGACTATAACATGACATACA+AGG - chr4_2:7295715-7295734 None:intergenic 30.0%
ATGTCATGTTATAGTCAACA+AGG + chr4_2:7295718-7295737 Msa0586190:CDS 30.0%
TAGTAATGAGTTATAGGAAG+AGG - chr4_2:7295767-7295786 None:intergenic 30.0%
TACACTGTTAATTATGGTGA+TGG + chr4_2:7295871-7295890 Msa0586190:CDS 30.0%
!!! ATTTTGTTTTTGGTTGTGGT+AGG + chr4_2:7295956-7295975 Msa0586190:CDS 30.0%
AGGAACAACAAAGGTTTATT+TGG + chr4_2:7295976-7295995 Msa0586190:CDS 30.0%
AACAACAAAGGTTTATTTGG+CGG + chr4_2:7295979-7295998 Msa0586190:CDS 30.0%
! TGGTTTGAGATATCATTGAT+AGG - chr4_2:7296038-7296057 None:intergenic 30.0%
TCTCAAACCAATACTACATT+TGG + chr4_2:7296048-7296067 Msa0586190:CDS 30.0%
!! TTTAAAGCATTGTAGAGTGA+TGG - chr4_2:7296327-7296346 None:intergenic 30.0%
ATCACTCTACAATGCTTTAA+AGG + chr4_2:7296326-7296345 Msa0586190:CDS 30.0%
!!! GAGTTTTTGAAACAGTTTTC+TGG + chr4_2:7296351-7296370 Msa0586190:CDS 30.0%
ATACATGTTTCAATCTGACT+GGG + chr4_2:7296406-7296425 Msa0586190:CDS 30.0%
TCAAAATGCATACTTAAGGT+AGG - chr4_2:7296450-7296469 None:intergenic 30.0%
GTTCTCAAAATGCATACTTA+AGG - chr4_2:7296454-7296473 None:intergenic 30.0%
! CAAACTTGTGAAACATCTTT+TGG - chr4_2:7296519-7296538 None:intergenic 30.0%
! AGATGTTTCACAAGTTTGTT+TGG + chr4_2:7296521-7296540 Msa0586190:CDS 30.0%
TCTTTCTGATGAAAATGACA+TGG + chr4_2:7296554-7296573 Msa0586190:CDS 30.0%
! AAATCCAATTTTGGACTGTT+TGG - chr4_2:7296628-7296647 None:intergenic 30.0%
! ATTTTCGTAGTAGGAATAAC+TGG - chr4_2:7296763-7296782 None:intergenic 30.0%
!! CTATGTTTAGCCTTATAACA+TGG + chr4_2:7296799-7296818 Msa0586190:three_prime_UTR 30.0%
TATGCTAGTACCATGTTATA+AGG - chr4_2:7296812-7296831 None:intergenic 30.0%
ACATTCTAACGACTAATGAA+GGG - chr4_2:7296948-7296967 None:intergenic 30.0%
TACATTCTAACGACTAATGA+AGG - chr4_2:7296949-7296968 None:intergenic 30.0%
TTGTGCATGAGGAATTATTG+GGG - chr4_2:7294487-7294506 None:intergenic 35.0%
CTTGTGCATGAGGAATTATT+GGG - chr4_2:7294488-7294507 None:intergenic 35.0%
ACTTGTGCATGAGGAATTAT+TGG - chr4_2:7294489-7294508 None:intergenic 35.0%
AATAATTCCTCATGCACAAG+TGG + chr4_2:7294488-7294507 Msa0586190:five_prime_UTR 35.0%
ATAATTCCTCATGCACAAGT+GGG + chr4_2:7294489-7294508 Msa0586190:five_prime_UTR 35.0%
ATTTGGCATGAGAACAAAAG+AGG - chr4_2:7294534-7294553 None:intergenic 35.0%
TCAAAGTGCAAATGTTGCAA+AGG + chr4_2:7294771-7294790 Msa0586190:CDS 35.0%
TTGCAAAGGAACCATCAATT+TGG + chr4_2:7294785-7294804 Msa0586190:CDS 35.0%
! GAACCATCAATTTGGTTCAA+AGG + chr4_2:7294793-7294812 Msa0586190:CDS 35.0%
AACCCTTTGAACCAAATTGA+TGG - chr4_2:7294799-7294818 None:intergenic 35.0%
TGCTAAACTCACTTGATTCT+GGG - chr4_2:7294829-7294848 None:intergenic 35.0%
GACAGATAAGAAACCAATGA+TGG - chr4_2:7294998-7295017 None:intergenic 35.0%
GTAACCTTACCTTTGAATCA+GGG - chr4_2:7295054-7295073 None:intergenic 35.0%
TGTAACCTTACCTTTGAATC+AGG - chr4_2:7295055-7295074 None:intergenic 35.0%
AACACGCGATATTACAAGTT+CGG + chr4_2:7295097-7295116 Msa0586190:intron 35.0%
ATAGAGGTTATTGCTCAAAG+AGG + chr4_2:7295437-7295456 Msa0586190:CDS 35.0%
! ATCCAAATTCCATTAGCTTC+TGG + chr4_2:7295583-7295602 Msa0586190:CDS 35.0%
TACCAGAAGCTAATGGAATT+TGG - chr4_2:7295588-7295607 None:intergenic 35.0%
CTACATTGTGACAATAGGAT+TGG + chr4_2:7295627-7295646 Msa0586190:CDS 35.0%
ATGACTGTGATAATCGATAC+CGG + chr4_2:7295661-7295680 Msa0586190:CDS 35.0%
ATGACATACAAGGATCACAT+TGG - chr4_2:7295705-7295724 None:intergenic 35.0%
TATAGGAAGAGGAGTTAGAA+GGG - chr4_2:7295756-7295775 None:intergenic 35.0%
TTATAGGAAGAGGAGTTAGA+AGG - chr4_2:7295757-7295776 None:intergenic 35.0%
ACAGTGTAGTTACAACTAGA+TGG - chr4_2:7295859-7295878 None:intergenic 35.0%
CTGAAATACCTCCAAAACTA+AGG - chr4_2:7295930-7295949 None:intergenic 35.0%
TCTTCCTAATCCCATTATAC+CGG - chr4_2:7296010-7296029 None:intergenic 35.0%
CAAACCAATACTACATTTGG+AGG + chr4_2:7296051-7296070 Msa0586190:CDS 35.0%
AACTCCTCCAAATGTAGTAT+TGG - chr4_2:7296058-7296077 None:intergenic 35.0%
TGTTTACCAACAACAGATAG+TGG + chr4_2:7296087-7296106 Msa0586190:CDS 35.0%
ACATAAAAGTTTGACAGCTG+TGG - chr4_2:7296198-7296217 None:intergenic 35.0%
! TTTTATGTACTCAACCTCAC+CGG + chr4_2:7296210-7296229 Msa0586190:CDS 35.0%
GCTATACAAGATACAAGCTT+TGG + chr4_2:7296252-7296271 Msa0586190:CDS 35.0%
GATACATGTTTCAATCTGAC+TGG + chr4_2:7296405-7296424 Msa0586190:CDS 35.0%
GAACAATGTTGATCTGAATG+TGG + chr4_2:7296470-7296489 Msa0586190:CDS 35.0%
AAAATGACATGGCCATCATT+GGG + chr4_2:7296565-7296584 Msa0586190:CDS 35.0%
TTGCTGATAATTCCCAATGA+TGG - chr4_2:7296580-7296599 None:intergenic 35.0%
TCATTGGGAATTATCAGCAA+AGG + chr4_2:7296580-7296599 Msa0586190:CDS 35.0%
ATTATCAGCAAAGGAATCAG+AGG + chr4_2:7296589-7296608 Msa0586190:CDS 35.0%
TTATCAGCAAAGGAATCAGA+GGG + chr4_2:7296590-7296609 Msa0586190:CDS 35.0%
AGTCCAAAATTGGATTTGCA+AGG + chr4_2:7296631-7296650 Msa0586190:CDS 35.0%
GTCCAAAATTGGATTTGCAA+GGG + chr4_2:7296632-7296651 Msa0586190:CDS 35.0%
! TTCCCTTGCAAATCCAATTT+TGG - chr4_2:7296637-7296656 None:intergenic 35.0%
GCTATACTAGATGTCTTACA+TGG + chr4_2:7296687-7296706 Msa0586190:three_prime_UTR 35.0%
ACATGGTACTAGCATAAGAA+TGG + chr4_2:7296816-7296835 Msa0586190:three_prime_UTR 35.0%
GCATAAGAATGGCATTTATC+AGG + chr4_2:7296827-7296846 Msa0586190:three_prime_UTR 35.0%
TCCTAGGTATATTGTTGTGT+TGG + chr4_2:7296853-7296872 Msa0586190:three_prime_UTR 35.0%
TAATTCCTCATGCACAAGTG+GGG + chr4_2:7294490-7294509 Msa0586190:five_prime_UTR 40.0%
! AGATTCTGAGTGGTGGAATT+TGG - chr4_2:7294551-7294570 None:intergenic 40.0%
AAAAGAGAGGAGATTCTGAG+TGG - chr4_2:7294561-7294580 None:intergenic 40.0%
TAAACTCACTTGATTCTGGG+AGG - chr4_2:7294826-7294845 None:intergenic 40.0%
CTGCTAAACTCACTTGATTC+TGG - chr4_2:7294830-7294849 None:intergenic 40.0%
GAATAGCAACCCTGATTCAA+AGG + chr4_2:7295042-7295061 Msa0586190:intron 40.0%
TGCTATCATCCTGGAAATGA+AGG + chr4_2:7295414-7295433 Msa0586190:CDS 40.0%
ATCCTGGAAATGAAGGATAG+AGG + chr4_2:7295421-7295440 Msa0586190:CDS 40.0%
AACCTCTATCCTTCATTTCC+AGG - chr4_2:7295426-7295445 None:intergenic 40.0%
ATACCGGAAGTGACTTAACA+TGG + chr4_2:7295677-7295696 Msa0586190:CDS 40.0%
TACCGGAAGTGACTTAACAT+GGG + chr4_2:7295678-7295697 Msa0586190:CDS 40.0%
GAGTTAGAAGGGTTGAAAAC+AGG - chr4_2:7295745-7295764 None:intergenic 40.0%
!! GGTGATGGATCATTTACTGA+TGG + chr4_2:7295886-7295905 Msa0586190:CDS 40.0%
TCATTTACTGATGGAGAGCT+AGG + chr4_2:7295895-7295914 Msa0586190:CDS 40.0%
!! GGTGTTGAACACCTTAGTTT+TGG + chr4_2:7295916-7295935 Msa0586190:CDS 40.0%
!!! GTTGAACACCTTAGTTTTGG+AGG + chr4_2:7295919-7295938 Msa0586190:CDS 40.0%
! GTTTCCGGTATAATGGGATT+AGG + chr4_2:7296003-7296022 Msa0586190:CDS 40.0%
!! GCTTCTGGTTCGTTAGTTAT+AGG + chr4_2:7296111-7296130 Msa0586190:CDS 40.0%
AGTTATAGGTAACGAGTCGT+CGG + chr4_2:7296125-7296144 Msa0586190:CDS 40.0%
TCCAATTGCTTACACCAGTA+TGG + chr4_2:7296164-7296183 Msa0586190:CDS 40.0%
ACCATACTGGTGTAAGCAAT+TGG - chr4_2:7296168-7296187 None:intergenic 40.0%
! CAAGATACAAGCTTTGGCAA+CGG + chr4_2:7296258-7296277 Msa0586190:CDS 40.0%
!! CATTCTAATTGATTCGGGGA+CGG + chr4_2:7296284-7296303 Msa0586190:CDS 40.0%
! GTATCCAAAATTGAAAGCGC+TGG - chr4_2:7296390-7296409 None:intergenic 40.0%
TTTCAATCTGACTGGGATTG+AGG + chr4_2:7296413-7296432 Msa0586190:CDS 40.0%
GAAAATGACATGGCCATCAT+TGG + chr4_2:7296564-7296583 Msa0586190:CDS 40.0%
GATGCCAAACAGTCCAAAAT+TGG + chr4_2:7296621-7296640 Msa0586190:CDS 40.0%
! GGCATTTATCAGGTTTTCCT+AGG + chr4_2:7296837-7296856 Msa0586190:three_prime_UTR 40.0%
GCCAACACAACAATATACCT+AGG - chr4_2:7296857-7296876 None:intergenic 40.0%
GAGTGAGAGAGGAAAAAGAG+AGG - chr4_2:7294574-7294593 None:intergenic 45.0%
TTTGAGAGTGAGAGTGAGAG+AGG - chr4_2:7294585-7294604 None:intergenic 45.0%
GCAACCCTGATTCAAAGGTA+AGG + chr4_2:7295047-7295066 Msa0586190:intron 45.0%
GCGTTCGTTCAATGCAAAAC+AGG + chr4_2:7295512-7295531 Msa0586190:CDS 45.0%
GCAAAACAGGATTCGAGCAA+AGG + chr4_2:7295525-7295544 Msa0586190:CDS 45.0%
GACCCATGTTAAGTCACTTC+CGG - chr4_2:7295683-7295702 None:intergenic 45.0%
GGTTGTGGTAGGAACAACAA+AGG + chr4_2:7295967-7295986 Msa0586190:CDS 45.0%
GGTTTATTTGGCGGAGTTTC+CGG + chr4_2:7295988-7296007 Msa0586190:CDS 45.0%
GAAGCTCCACTATCTGTTGT+TGG - chr4_2:7296096-7296115 None:intergenic 45.0%
!! ACAACAGATAGTGGAGCTTC+TGG + chr4_2:7296096-7296115 Msa0586190:CDS 45.0%
CTGTGGATTCGAAACCATAC+TGG - chr4_2:7296181-7296200 None:intergenic 45.0%
CGGCGGCATTCTAATTGATT+CGG + chr4_2:7296278-7296297 Msa0586190:CDS 45.0%
! GGCGGCATTCTAATTGATTC+GGG + chr4_2:7296279-7296298 Msa0586190:CDS 45.0%
!! GCGGCATTCTAATTGATTCG+GGG + chr4_2:7296280-7296299 Msa0586190:CDS 45.0%
! TGCACCAGCGCTTTCAATTT+TGG + chr4_2:7296383-7296402 Msa0586190:CDS 45.0%
GATCTGAATGTGGATGCAGT+TGG + chr4_2:7296480-7296499 Msa0586190:CDS 45.0%
GTATACCCCACTTGTGCATG+AGG - chr4_2:7294498-7294517 None:intergenic 50.0%
AGAGAGGAGATTCTGAGTGG+TGG - chr4_2:7294558-7294577 None:intergenic 50.0%
CGCTCAAGCTGGCGAAAAAA+AGG - chr4_2:7295143-7295162 None:intergenic 50.0%
!! GGAGAAAGGTGCTATCATCC+TGG + chr4_2:7295405-7295424 Msa0586190:CDS 50.0%
AGGATTCGAGCAAAGGTCAC+TGG + chr4_2:7295532-7295551 Msa0586190:CDS 50.0%
TGGCGGAGTTTCCGGTATAA+TGG + chr4_2:7295996-7296015 Msa0586190:CDS 50.0%
GGCGGAGTTTCCGGTATAAT+GGG + chr4_2:7295997-7296016 Msa0586190:CDS 50.0%
AACCTCACCGGCATAGATGT+TGG + chr4_2:7296222-7296241 Msa0586190:CDS 50.0%
CACACCACCAACATCTATGC+CGG - chr4_2:7296232-7296251 None:intergenic 50.0%
! GATACAAGCTTTGGCAACGG+CGG + chr4_2:7296261-7296280 Msa0586190:CDS 50.0%
!! TTGAAAGCGCTGGTGCAGTA+GGG - chr4_2:7296380-7296399 None:intergenic 50.0%
!! ATTGAAAGCGCTGGTGCAGT+AGG - chr4_2:7296381-7296400 None:intergenic 50.0%
CACCAACATCTATGCCGGTG+AGG - chr4_2:7296227-7296246 None:intergenic 55.0%
CTCACCGGCATAGATGTTGG+TGG + chr4_2:7296225-7296244 Msa0586190:CDS 55.0%
!! CGGCATAGATGTTGGTGGTG+TGG + chr4_2:7296230-7296249 Msa0586190:CDS 55.0%
AGTGGGCAGTTCGCTCAAGC+TGG - chr4_2:7295154-7295173 None:intergenic 60.0%
GGGGACGGTGATCACGAGAC+TGG + chr4_2:7296299-7296318 Msa0586190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 7294444 7296969 7294444 ID=Msa0586190;Name=Msa0586190
chr4_2 mRNA 7294444 7296969 7294444 ID=Msa0586190-mRNA-1;Parent=Msa0586190;Name=Msa0586190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|2|295|521
chr4_2 exon 7294444 7294836 7294444 ID=Msa0586190-mRNA-1:exon:1852;Parent=Msa0586190-mRNA-1
chr4_2 exon 7295401 7296969 7295401 ID=Msa0586190-mRNA-1:exon:1853;Parent=Msa0586190-mRNA-1
chr4_2 five_prime_UTR 7294444 7294544 7294444 ID=Msa0586190-mRNA-1:five_prime_utr;Parent=Msa0586190-mRNA-1
chr4_2 CDS 7294545 7294836 7294545 ID=Msa0586190-mRNA-1:cds;Parent=Msa0586190-mRNA-1
chr4_2 CDS 7295401 7296674 7295401 ID=Msa0586190-mRNA-1:cds;Parent=Msa0586190-mRNA-1
chr4_2 three_prime_UTR 7296675 7296969 7296675 ID=Msa0586190-mRNA-1:three_prime_utr;Parent=Msa0586190-mRNA-1
Gene Sequence

>Msa0586190

ATGCCAAATTCCACCACTCAGAATCTCCTCTCTTTTTCCTCTCTCACTCTCACTCTCAAATGTACCTTCTTTCTTACTACTTCCATTAGAATTTTTCTCTTTTTCTCTTACTCTTTTCACAAATTCATGGCTTTCAACATAGCTACTATGTTGCCATTTTTTCTTTCTTTTGTTTTTCTTTACTTTATCATTGCAAATGGGGGTTGTGAACTTGAAGAGAAGATGTTCAAAGTGCAAATGTTGCAAAGGAACCATCAATTTGGTTCAAAGGGTTGCATCCTCCCAGAATCAAGAAAGGAGAAAGGTGCTATCATCCTGGAAATGAAGGATAGAGGTTATTGCTCAAAGAGGAAAATTAATTGGAACAGAAAGCTTCAGAAACAGTTAATATTTGATGATCTTCGCGTTCGTTCAATGCAAAACAGGATTCGAGCAAAGGTCACTGGTCATAATAGTTCAGAACAATCTTCAGAAATCCAAATTCCATTAGCTTCTGGTATAAATTTGGAGACTTTAAACTACATTGTGACAATAGGATTGGGTAATCAGAACATGACTGTGATAATCGATACCGGAAGTGACTTAACATGGGTCCAATGTGATCCTTGTATGTCATGTTATAGTCAACAAGGACCTGTTTTCAACCCTTCTAACTCCTCTTCCTATAACTCATTACTATGCAATTCATCAACATGCCAAAATCTTCAATTTACTACAGGAAATACAGAAGCATGTGAAAGTAATAATCCATCTAGTTGTAACTACACTGTTAATTATGGTGATGGATCATTTACTGATGGAGAGCTAGGTGTTGAACACCTTAGTTTTGGAGGTATTTCAGTTAGTAATTTTGTTTTTGGTTGTGGTAGGAACAACAAAGGTTTATTTGGCGGAGTTTCCGGTATAATGGGATTAGGAAGAAGTAACCTATCAATGATATCTCAAACCAATACTACATTTGGAGGAGTTTTCTCATACTGTTTACCAACAACAGATAGTGGAGCTTCTGGTTCGTTAGTTATAGGTAACGAGTCGTCGGTTTTCAAGAATCTTACTCCAATTGCTTACACCAGTATGGTTTCGAATCCACAGCTGTCAAACTTTTATGTACTCAACCTCACCGGCATAGATGTTGGTGGTGTGGCTATACAAGATACAAGCTTTGGCAACGGCGGCATTCTAATTGATTCGGGGACGGTGATCACGAGACTGGCTCCATCACTCTACAATGCTTTAAAGGCAGAGTTTTTGAAACAGTTTTCTGGTTACCCTACTGCACCAGCGCTTTCAATTTTGGATACATGTTTCAATCTGACTGGGATTGAGGAAGTTAGCATACCTACCTTAAGTATGCATTTTGAGAACAATGTTGATCTGAATGTGGATGCAGTTGGTATATTGTATATGCCAAAAGATGTTTCACAAGTTTGTTTGGCAGTTGCAAGTCTTTCTGATGAAAATGACATGGCCATCATTGGGAATTATCAGCAAAGGAATCAGAGGGTAATATATGATGCCAAACAGTCCAAAATTGGATTTGCAAGGGAAGACTGCAGTTTCATTTGA

Protein sequence

>Msa0586190

MPNSTTQNLLSFSSLTLTLKCTFFLTTSIRIFLFFSYSFHKFMAFNIATMLPFFLSFVFLYFIIANGGCELEEKMFKVQMLQRNHQFGSKGCILPESRKEKGAIILEMKDRGYCSKRKINWNRKLQKQLIFDDLRVRSMQNRIRAKVTGHNSSEQSSEIQIPLASGINLETLNYIVTIGLGNQNMTVIIDTGSDLTWVQCDPCMSCYSQQGPVFNPSNSSSYNSLLCNSSTCQNLQFTTGNTEACESNNPSSCNYTVNYGDGSFTDGELGVEHLSFGGISVSNFVFGCGRNNKGLFGGVSGIMGLGRSNLSMISQTNTTFGGVFSYCLPTTDSGASGSLVIGNESSVFKNLTPIAYTSMVSNPQLSNFYVLNLTGIDVGGVAIQDTSFGNGGILIDSGTVITRLAPSLYNALKAEFLKQFSGYPTAPALSILDTCFNLTGIEEVSIPTLSMHFENNVDLNVDAVGILYMPKDVSQVCLAVASLSDENDMAIIGNYQQRNQRVIYDAKQSKIGFAREDCSFI*