AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1031350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031350 MtrunA17_Chr7g0252821 99.471 189 1 0 81 269 1 189 9.27e-137 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031350 AT5G06660.1 83.511 188 27 2 85 268 8 195 5.77e-101 293
Msa1031350 AT3G12030.1 83.069 189 28 2 85 269 8 196 1.40e-93 274

Find 74 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTTCTCTTTGTGGTATT+TGG 0.104469 7_1:-65944860 Msa1031350:CDS
GGTTCTTCTAATATCTGATT+AGG 0.231594 7_1:+65946778 None:intergenic
AAAAGGCTTGAATGGCAATT+TGG 0.263436 7_1:+65944802 None:intergenic
AAATTGCCATTCAAGCCTTT+TGG 0.268584 7_1:-65944800 Msa1031350:CDS
TGGTTCTCTTTGTGGTATTT+GGG 0.271042 7_1:-65944859 Msa1031350:CDS
ACGAAGACGGTGATGGGTTT+TGG 0.278053 7_1:+65946757 None:intergenic
AACAAATTTGCAGAAGTTCT+TGG 0.285687 7_1:-65944681 Msa1031350:CDS
GAACTAGATCAACTGGTCTT+TGG 0.297367 7_1:+65944608 None:intergenic
TTTCTAGGTTGATGTTAATC+TGG 0.297814 7_1:-65944558 Msa1031350:three_prime_UTR
CTTCATAGTCTCGAGTTTCT+TGG 0.298943 7_1:+65945009 None:intergenic
GTTCTTCTAATATCTGATTA+GGG 0.310016 7_1:+65946779 None:intergenic
AACTAGATCAACTGGTCTTT+GGG 0.342623 7_1:+65944609 None:intergenic
CAAATTTGTTCTGATACTAA+TGG 0.343691 7_1:+65944694 None:intergenic
GGTTGCTCTGGTTCTCTTTG+TGG 0.348482 7_1:-65944867 Msa1031350:CDS
AGCTGTGAACGCACGCGCCT+TGG 0.353951 7_1:-65946706 Msa1031350:CDS
ATAGGAGAGTTTCTTCGCTT+TGG 0.360635 7_1:-65944375 Msa1031350:three_prime_UTR
CCGCCAAGGGGTGCAGGTGC+TGG 0.379709 7_1:-65944650 Msa1031350:CDS
ACAAATTTGCAGAAGTTCTT+GGG 0.395345 7_1:-65944680 Msa1031350:CDS
CTGGTCTTTGGGTCTGGCAT+TGG 0.395377 7_1:+65944620 None:intergenic
GCGAAGGTTCTTGTAAGAAT+TGG 0.409536 7_1:+65945051 None:intergenic
CATAACAGAACTAGATCAAC+TGG 0.415941 7_1:+65944601 None:intergenic
AGAAACAAAGACAGCAAACT+TGG 0.427908 7_1:+65945205 None:intergenic
ATTCAGATTCACTCACTCTC+TGG 0.432865 7_1:-65946822 Msa1031350:intron
ATCCGGTGGTGTGGTTGCTC+TGG 0.434250 7_1:-65944879 Msa1031350:CDS
TTTGCACCGCCAAGGGGTGC+AGG 0.441884 7_1:-65944656 Msa1031350:CDS
TCTCTCTTCAAGTTTAAATC+CGG 0.442713 7_1:-65944896 Msa1031350:CDS
CTTGGAAGCTTTGTCGATAG+AGG 0.450316 7_1:+65945027 None:intergenic
CTCGGATGGCCTCACTGTTG+TGG 0.453737 7_1:-65945134 Msa1031350:CDS
CTGCTCAATTCGCTATTTGA+AGG 0.455366 7_1:-65944836 Msa1031350:CDS
GATCAACTGGTCTTTGGGTC+TGG 0.458148 7_1:+65944614 None:intergenic
CACGTTCTTGCGATTCCTCA+AGG 0.462160 7_1:-65946676 Msa1031350:intron
CCAGCACCTGCACCCCTTGG+CGG 0.467860 7_1:+65944650 None:intergenic
TCGGATGGCCTCACTGTTGT+GGG 0.468742 7_1:-65945133 Msa1031350:CDS
CTTCTCAGATTTCAAGTACT+CGG 0.477023 7_1:-65945152 Msa1031350:CDS
ACAAGCCCAAAAGGCTTGAA+TGG 0.484472 7_1:+65944794 None:intergenic
ATCTTCATAACAAGCCCAAA+AGG 0.485077 7_1:+65944785 None:intergenic
TTGTCTGTGAGGCCATCTCA+TGG 0.486509 7_1:-65945090 Msa1031350:CDS
TGCTGGTCTCCCTAGGAGAA+TGG 0.489377 7_1:+65944503 None:intergenic
CTCTTCAAGTTTAAATCCGG+TGG 0.507122 7_1:-65944893 Msa1031350:CDS
AGACCAGCACCTGCACCCCT+TGG 0.507589 7_1:+65944647 None:intergenic
TTGCTTGTCTACCGTACCAT+AGG 0.517443 7_1:-65944393 Msa1031350:three_prime_UTR
GAGTTGACGAAGACGGTGAT+GGG 0.529556 7_1:+65946751 None:intergenic
CGAGTACTTGAAATCTGAGA+AGG 0.540066 7_1:+65945153 None:intergenic
AGTCACGACTAGATTCTTTG+AGG 0.544166 7_1:+65944921 None:intergenic
AGAGTTGACGAAGACGGTGA+TGG 0.546853 7_1:+65946750 None:intergenic
AAAATCATGCTGGTCTCCCT+AGG 0.547624 7_1:+65944496 None:intergenic
CAATTCGCTATTTGAAGGCA+AGG 0.549223 7_1:-65944831 Msa1031350:CDS
TGTCTGTGAGGCCATCTCAT+GGG 0.550860 7_1:-65945089 Msa1031350:CDS
CAAGTTTAAATCCGGTGGTG+TGG 0.561902 7_1:-65944888 Msa1031350:CDS
AACCAGAGCAACCACACCAC+CGG 0.570086 7_1:+65944877 None:intergenic
TATAACAATTAAAATCATGC+TGG 0.570708 7_1:+65944486 None:intergenic
AAAGCGAAGAAACTCTCCTA+TGG 0.571285 7_1:+65944377 None:intergenic
TCAGATTTCAAGTACTCGGA+TGG 0.574798 7_1:-65945148 Msa1031350:CDS
AAATGCCATGGAACAATCAG+TGG 0.579830 7_1:+65944733 None:intergenic
ATGAGCCATCGAGGGTTGCA+AGG 0.585212 7_1:-65944764 Msa1031350:CDS
CTTTGTCGATAGAGGAGCGA+AGG 0.585269 7_1:+65945035 None:intergenic
CATTACCTTGCAACCCTCGA+TGG 0.592832 7_1:+65944759 None:intergenic
TGATCCCACTGATTGTTCCA+TGG 0.598157 7_1:-65944738 Msa1031350:CDS
GTAAATAAGAACCCATGAGA+TGG 0.599701 7_1:+65945078 None:intergenic
TTCTGATACTAATGGAACAC+AGG 0.602611 7_1:+65944702 None:intergenic
CTGTACAGCTATTGTCTGTG+AGG 0.606267 7_1:-65945101 Msa1031350:CDS
ATCTGAGAAGGGATATGCCA+TGG 0.607371 7_1:+65945165 None:intergenic
CAGGAAGTATAGAAATGCCA+TGG 0.612214 7_1:+65944721 None:intergenic
CAAGAACGTGAACGAAGCCA+AGG 0.613216 7_1:+65946689 None:intergenic
GAGAAGGGATATGCCATGGA+TGG 0.614420 7_1:+65945169 None:intergenic
GAAGAAACTCTCCTATGGTA+CGG 0.615810 7_1:+65944382 None:intergenic
TTATGAAGATGAGCCATCGA+GGG 0.622078 7_1:-65944772 Msa1031350:CDS
AGAGAAAGAGTTGACGAAGA+CGG 0.626905 7_1:+65946744 None:intergenic
GAGTACTTGAAATCTGAGAA+GGG 0.629348 7_1:+65945154 None:intergenic
GGTTCTTGTAAGAATTGGTG+CGG 0.654185 7_1:+65945056 None:intergenic
CTTTGAGGCTAGTCTCAACA+CGG 0.657831 7_1:+65944936 None:intergenic
AATGCCATGGAACAATCAGT+GGG 0.668389 7_1:+65944734 None:intergenic
GTTATGAAGATGAGCCATCG+AGG 0.685544 7_1:-65944773 Msa1031350:CDS
AAGAGATACCCACAACAGTG+AGG 0.718334 7_1:+65945125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTTATTTTATTTTT+CGG + chr7_1:65949639-65949658 None:intergenic 0.0%
!!! TAATAAATGCATTATTTTTT+TGG - chr7_1:65945932-65945951 Msa1031350:intron 10.0%
!!! AATAAATGCATTATTTTTTT+GGG - chr7_1:65945933-65945952 Msa1031350:intron 10.0%
!! GAAAAAAAAAACTTTATATT+TGG - chr7_1:65946706-65946725 Msa1031350:CDS 10.0%
!!! TAGTTTATTTATTTTTACAA+TGG - chr7_1:65947009-65947028 Msa1031350:intron 10.0%
!! TATACAAAAATAAATTTACA+AGG - chr7_1:65947088-65947107 Msa1031350:intron 10.0%
!! AATAATCTTAAATTATTTCA+TGG + chr7_1:65947489-65947508 None:intergenic 10.0%
!!! AATAAATAATTTAGTTTGTT+TGG - chr7_1:65947580-65947599 Msa1031350:intron 10.0%
!!! ATAAAATAGATTTTTTTTAG+AGG - chr7_1:65947865-65947884 Msa1031350:intron 10.0%
!!! AAAAATAGATTTTTTTTAGA+GGG + chr7_1:65948281-65948300 None:intergenic 10.0%
!!! AAAAAATAGATTTTTTTTAG+AGG + chr7_1:65948282-65948301 None:intergenic 10.0%
!!! AAAAAAAGTGATTTTTATTA+AGG + chr7_1:65947981-65948000 None:intergenic 10.0%
!!! AAAAAATAATTTAGTTTGTT+TGG - chr7_1:65949301-65949320 Msa1031350:intron 10.0%
!! AATTATAAAATATATGAAGT+TGG - chr7_1:65950823-65950842 Msa1031350:intron 10.0%
!! AATAAATTCATTAAAATTGT+AGG + chr7_1:65950925-65950944 None:intergenic 10.0%
! CGCGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945283-65945302 Msa1031350:intron 100.0%
! GCGGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945284-65945303 Msa1031350:intron 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945285-65945304 Msa1031350:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945286-65945305 Msa1031350:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945286-65945305 Msa1031350:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945286-65945305 Msa1031350:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr7_1:65945286-65945305 Msa1031350:intron 100.0%
!! ATATATAACTTAGATTCTAT+TGG - chr7_1:65944705-65944724 Msa1031350:CDS 15.0%
!! TGGAATAGTATAAAAATAAT+TGG - chr7_1:65944879-65944898 Msa1031350:CDS 15.0%
!! GGAATAGTATAAAAATAATT+GGG - chr7_1:65944880-65944899 Msa1031350:CDS 15.0%
!!! ATTTTTTATAGTTAATAGCT+TGG + chr7_1:65945497-65945516 None:intergenic 15.0%
!! TTTGAAAAAAGATTAATGAA+TGG + chr7_1:65946178-65946197 None:intergenic 15.0%
!!! TATTAATTTGATTGAAAGAA+AGG - chr7_1:65946737-65946756 Msa1031350:CDS 15.0%
!!! ATTAATTTGATTGAAAGAAA+GGG - chr7_1:65946738-65946757 Msa1031350:CDS 15.0%
!!! TAACCAATTTTTCTATTTAA+TGG - chr7_1:65947057-65947076 Msa1031350:intron 15.0%
!!! AATTTTTCTATTTAATGGAA+GGG - chr7_1:65947062-65947081 Msa1031350:intron 15.0%
!!! TTGAATCTAGATTATTTTTT+TGG + chr7_1:65947193-65947212 None:intergenic 15.0%
!!! TATTTTTTTTTCCTCAAAAA+AGG + chr7_1:65947284-65947303 None:intergenic 15.0%
!!! GATTTTTTGTTACAAAATTA+GGG - chr7_1:65947621-65947640 Msa1031350:intron 15.0%
!!! TTTTAAAAATCTGTAACAAA+CGG + chr7_1:65948366-65948385 None:intergenic 15.0%
!!! CATAAAATCTCTAAAATATA+GGG + chr7_1:65948112-65948131 None:intergenic 15.0%
!!! TCATAAAATCTCTAAAATAT+AGG + chr7_1:65948113-65948132 None:intergenic 15.0%
!!! ACAAATAATTTTAGTTTGTT+TGG - chr7_1:65948187-65948206 Msa1031350:intron 15.0%
!!! AAAATAGATTTTTTTTAGAG+GGG + chr7_1:65947867-65947886 None:intergenic 15.0%
!!! TTTTAAAAATCTGTAACAAA+CGG - chr7_1:65948366-65948385 Msa1031350:intron 15.0%
!!! AGATTTTGATTTTTCATAAA+GGG + chr7_1:65948777-65948796 None:intergenic 15.0%
!!! TAGATTTTGATTTTTCATAA+AGG + chr7_1:65948778-65948797 None:intergenic 15.0%
!!! AACAAATAATTTAGTTTGTT+TGG - chr7_1:65948836-65948855 Msa1031350:intron 15.0%
!!! CAAAAAATAGATTTTTTTAG+AGG + chr7_1:65949396-65949415 None:intergenic 15.0%
!!! TTTGCATAAACTTTTTTTTA+AGG - chr7_1:65949593-65949612 Msa1031350:intron 15.0%
!!! TTGCATAAACTTTTTTTTAA+GGG - chr7_1:65949594-65949613 Msa1031350:intron 15.0%
!!! TTTTTTTTTTTTTTTGAAGG+AGG + chr7_1:65949844-65949863 None:intergenic 15.0%
!!! CACTTTTTTTTTTTTTTTGA+AGG + chr7_1:65949847-65949866 None:intergenic 15.0%
!! TTATAGATATACTTAACAAA+CGG - chr7_1:65950717-65950736 Msa1031350:intron 15.0%
!! ATAAAAAATGAATATAGGTT+TGG + chr7_1:65951388-65951407 None:intergenic 15.0%
!! AGAACATAAAAAATGAATAT+AGG + chr7_1:65951393-65951412 None:intergenic 15.0%
!!! ATTTTTTATGTTCTATAAAC+AGG - chr7_1:65951399-65951418 Msa1031350:intron 15.0%
!!! ATTTTAGTTTTATGGTTATT+TGG - chr7_1:65952251-65952270 Msa1031350:intron 15.0%
!! AATGATTCACCTAATTATAT+GGG - chr7_1:65944406-65944425 Msa1031350:three_prime_UTR 20.0%
!! TGTATCAAAAGAATTGTTTA+TGG - chr7_1:65944859-65944878 Msa1031350:CDS 20.0%
!!! AAATAGGTTTTTCAAATGTT+TGG - chr7_1:65945164-65945183 Msa1031350:CDS 20.0%
!! TATGGAAAAATATCCAAAAT+TGG - chr7_1:65945677-65945696 Msa1031350:intron 20.0%
!! CTTCCATTAAATAGAAAAAT+TGG + chr7_1:65947063-65947082 None:intergenic 20.0%
!!! CAATTTTTCTATTTAATGGA+AGG - chr7_1:65947061-65947080 Msa1031350:intron 20.0%
!!! CGATTTTTTGTTACAAAATT+AGG - chr7_1:65947620-65947639 Msa1031350:intron 20.0%
!! TTAAAAAAGCTATAACAAAC+GGG + chr7_1:65948439-65948458 None:intergenic 20.0%
!! CTTAAAAAAGCTATAACAAA+CGG + chr7_1:65948438-65948457 None:intergenic 20.0%
!! TTGGATACAACTATATAAAA+GGG + chr7_1:65948206-65948225 None:intergenic 20.0%
!! TTTGGATACAACTATATAAA+AGG + chr7_1:65948205-65948224 None:intergenic 20.0%
!!! AACAAATAATCTAGTTTGTT+TGG + chr7_1:65947960-65947979 None:intergenic 20.0%
!! CTTAAAAAAGCTATAACAAA+CGG - chr7_1:65948438-65948457 Msa1031350:intron 20.0%
!! TTAAAAAAGCTATAACAAAC+GGG - chr7_1:65948439-65948458 Msa1031350:intron 20.0%
!!! TTATTTTAATCCGTAACAAA+CGG - chr7_1:65948750-65948769 Msa1031350:intron 20.0%
!! TTTGGATAGAACTATATAAA+AGG - chr7_1:65948854-65948873 Msa1031350:intron 20.0%
!! TTGGATAGAACTATATAAAA+GGG - chr7_1:65948855-65948874 Msa1031350:intron 20.0%
!! TTTAGAGAAGAGAAAAAATA+TGG + chr7_1:65948914-65948933 None:intergenic 20.0%
!!! AAAAATCTTTTGTCAAAAGA+TGG - chr7_1:65947217-65947236 Msa1031350:intron 20.0%
!!! AAAATCTTTTGTCAAAAGAT+GGG - chr7_1:65949136-65949155 Msa1031350:intron 20.0%
!!! TTTTTAAAAGCTGTAACAAA+CGG - chr7_1:65949453-65949472 Msa1031350:intron 20.0%
!! TTAAAAAAGCTATAACAAAC+CGG - chr7_1:65948439-65948458 Msa1031350:intron 20.0%
!! GATAATGCATAAAATATGTA+AGG - chr7_1:65949727-65949746 Msa1031350:intron 20.0%
!!! AATAACAGACTTTTTTTTAG+TGG + chr7_1:65949774-65949793 None:intergenic 20.0%
!!! TTCTGTTTTCATTCTTAAAA+AGG - chr7_1:65949807-65949826 Msa1031350:intron 20.0%
!!! TACATTAACGCTTAATTTTT+TGG + chr7_1:65950538-65950557 None:intergenic 20.0%
!! TAGTATGATAGAAAATAACA+TGG - chr7_1:65950742-65950761 Msa1031350:intron 20.0%
!! ATAGAAAATAACATGGAAAA+TGG - chr7_1:65950749-65950768 Msa1031350:intron 20.0%
!! TAGAAAATAACATGGAAAAT+GGG - chr7_1:65950750-65950769 Msa1031350:intron 20.0%
!! AAAACAATTTGGTTATAAGA+CGG + chr7_1:65951123-65951142 None:intergenic 20.0%
!! ATATAATGCTCAAAACAATT+TGG + chr7_1:65951134-65951153 None:intergenic 20.0%
!! TGGAGTATAAAGTTATAAAT+AGG + chr7_1:65951368-65951387 None:intergenic 20.0%
!! TAAAGTTTGTGTATTTATAC+AGG - chr7_1:65951436-65951455 Msa1031350:intron 20.0%
!! TATAACAATTAAAATCATGC+TGG + chr7_1:65952212-65952231 None:intergenic 20.0%
!!! AGAAGTCAATTTTAGTTTTA+TGG - chr7_1:65952243-65952262 Msa1031350:intron 20.0%
! GAATGATTCACCTAATTATA+TGG - chr7_1:65944405-65944424 Msa1031350:three_prime_UTR 25.0%
! GAAAAAACAAGATAGAGATT+AGG + chr7_1:65944546-65944565 None:intergenic 25.0%
!! CATTGAGGATCAATTTATTT+TGG - chr7_1:65944832-65944851 Msa1031350:CDS 25.0%
! TATATAAAATGCAAGACTAG+AGG - chr7_1:65945055-65945074 Msa1031350:CDS 25.0%
! TTTACTAACATCAAGCTTTA+GGG + chr7_1:65945098-65945117 None:intergenic 25.0%
!!! TTTCAAATGTTTGGATTAGT+TGG - chr7_1:65945173-65945192 Msa1031350:CDS 25.0%
!! CAACAGTTTTCTTTTATGTA+AGG - chr7_1:65945410-65945429 Msa1031350:intron 25.0%
! AACAATATCATTCATCTCTT+AGG - chr7_1:65945557-65945576 Msa1031350:intron 25.0%
! ATTTCTTCTTAAATGAGGTA+GGG + chr7_1:65945746-65945765 None:intergenic 25.0%
! AATTTCTTCTTAAATGAGGT+AGG + chr7_1:65945747-65945766 None:intergenic 25.0%
!! GCATGATGAATTCATTTTAT+TGG - chr7_1:65945771-65945790 Msa1031350:intron 25.0%
!!! TTATTGGAGTTCTAAGATAA+TGG - chr7_1:65945787-65945806 Msa1031350:intron 25.0%
! AAGTATTAATTGGCTAAACT+AGG - chr7_1:65945816-65945835 Msa1031350:intron 25.0%
! AAAGCTTATTGAATACATTG+AGG + chr7_1:65946118-65946137 None:intergenic 25.0%
! ATTCAATAAGCTTTCTTCAT+AGG - chr7_1:65946124-65946143 Msa1031350:intron 25.0%
! AAAAAGATTAATGAATGGAG+TGG + chr7_1:65946173-65946192 None:intergenic 25.0%
!!! TGGTAGATTTTTTATCTGAT+TGG + chr7_1:65946280-65946299 None:intergenic 25.0%
!! AAGAAAAACAACGATTTTGA+AGG + chr7_1:65946379-65946398 None:intergenic 25.0%
!!! CATGTTTTTGTTTATTTCGT+CGG - chr7_1:65946428-65946447 Msa1031350:intron 25.0%
!!! ACTGAAGTTGATATTTCAAT+AGG - chr7_1:65946586-65946605 Msa1031350:intron 25.0%
!!! CTGAAGTTGATATTTCAATA+GGG - chr7_1:65946587-65946606 Msa1031350:intron 25.0%
! TTCAAATGAGAAGCTATTAA+GGG - chr7_1:65947428-65947447 Msa1031350:intron 25.0%
!!! TTATTTTAGTCTGTGACAAA+CGG + chr7_1:65947455-65947474 None:intergenic 25.0%
!!! TTATTTTAATCCGTAACCAA+CGG + chr7_1:65947648-65947667 None:intergenic 25.0%
!!! TTATTTTAATCCGTAACAGA+CGG - chr7_1:65948085-65948104 Msa1031350:intron 25.0%
!! TTTCTAATTGAGAGTTTGTT+TGG + chr7_1:65949118-65949137 None:intergenic 25.0%
! GTTCTTCTAATATCTGATTA+GGG + chr7_1:65949919-65949938 None:intergenic 25.0%
! ATTCTTAATCACATCTATCT+CGG - chr7_1:65950077-65950096 Msa1031350:intron 25.0%
!!! TCCTGTTGATTTAATTTTGA+AGG - chr7_1:65950118-65950137 Msa1031350:intron 25.0%
! ACCTTCAAAATTAAATCAAC+AGG + chr7_1:65950122-65950141 None:intergenic 25.0%
!! AACTCTAACTTTAAGTTCAT+GGG - chr7_1:65950285-65950304 Msa1031350:intron 25.0%
! AATCTAACACCCAAAAAAAT+GGG + chr7_1:65950337-65950356 None:intergenic 25.0%
! AAATCTAACACCCAAAAAAA+TGG + chr7_1:65950338-65950357 None:intergenic 25.0%
! TAATGTATGCTTTAATTGGT+TGG - chr7_1:65950551-65950570 Msa1031350:intron 25.0%
! TATGTATAGACATTAACACA+CGG + chr7_1:65950647-65950666 None:intergenic 25.0%
!! GTTTTATCTTCTTACTTGAA+AGG - chr7_1:65950874-65950893 Msa1031350:intron 25.0%
! ATTCCATCATTAACCATATT+TGG + chr7_1:65950989-65951008 None:intergenic 25.0%
! ATATGTTTAACAGTAAGTAC+AGG - chr7_1:65951150-65951169 Msa1031350:intron 25.0%
! TCTTTCTAACATAACATAAG+AGG - chr7_1:65951233-65951252 Msa1031350:intron 25.0%
! TCTTTCTTAACATAACATAG+AGG - chr7_1:65951275-65951294 Msa1031350:intron 25.0%
! AAGTAGCAAAGATATGATTA+TGG - chr7_1:65951314-65951333 Msa1031350:intron 25.0%
! CAAAGATATGATTATGGATT+AGG - chr7_1:65951320-65951339 Msa1031350:intron 25.0%
!! TTGTGTATTTATACAGGTTT+TGG - chr7_1:65951442-65951461 Msa1031350:intron 25.0%
!! CAAATTTGTTCTGATACTAA+TGG + chr7_1:65952004-65952023 None:intergenic 25.0%
!! ATATTTTATTCCATTCTCCT+AGG - chr7_1:65952182-65952201 Msa1031350:intron 25.0%
!! TATTTTATTCCATTCTCCTA+GGG - chr7_1:65952183-65952202 Msa1031350:intron 25.0%
ATTCACCTAATTATATGGGT+TGG - chr7_1:65944410-65944429 Msa1031350:three_prime_UTR 30.0%
ATGATCCAACCCATATAATT+AGG + chr7_1:65944418-65944437 None:intergenic 30.0%
! TAGTATTTTACTCTTTGCCT+CGG - chr7_1:65944514-65944533 Msa1031350:three_prime_UTR 30.0%
TTAGCACAAACAATAAGAAC+GGG + chr7_1:65944597-65944616 None:intergenic 30.0%
GTTAGCACAAACAATAAGAA+CGG + chr7_1:65944598-65944617 None:intergenic 30.0%
GGGGATTGTTTCATATAATA+TGG - chr7_1:65944636-65944655 Msa1031350:CDS 30.0%
TTAGAGTCAAGTGATTAGTA+GGG + chr7_1:65944750-65944769 None:intergenic 30.0%
ATTAGAGTCAAGTGATTAGT+AGG + chr7_1:65944751-65944770 None:intergenic 30.0%
TACTAATCACTTGACTCTAA+TGG - chr7_1:65944750-65944769 Msa1031350:CDS 30.0%
! AAGGCATTAAAACAATGAGA+GGG + chr7_1:65944783-65944802 None:intergenic 30.0%
CTTTACTAACATCAAGCTTT+AGG + chr7_1:65945099-65945118 None:intergenic 30.0%
AGTAACCAGAATATTCATGA+GGG + chr7_1:65945457-65945476 None:intergenic 30.0%
AAGTAACCAGAATATTCATG+AGG + chr7_1:65945458-65945477 None:intergenic 30.0%
GTTACTTATGATACTTCTAG+TGG - chr7_1:65945471-65945490 Msa1031350:intron 30.0%
AGAGATGAATGATATTGTTC+TGG + chr7_1:65945556-65945575 None:intergenic 30.0%
!! CTTTTATCAAAGAGCGTATA+TGG - chr7_1:65945659-65945678 Msa1031350:intron 30.0%
GCTCAATTTCTTCTTAAATG+AGG + chr7_1:65945751-65945770 None:intergenic 30.0%
!! ATGGTGGTAGAAGTATTAAT+TGG - chr7_1:65945806-65945825 Msa1031350:intron 30.0%
GGTGATCAGATGAAAAATTT+AGG + chr7_1:65946097-65946116 None:intergenic 30.0%
AATTCGCAAGAAAATGAGAA+TGG + chr7_1:65946300-65946319 None:intergenic 30.0%
TGTAAAATTACGTCGTTTGA+TGG + chr7_1:65946328-65946347 None:intergenic 30.0%
TGATTGAAAGAAAGGGAAAA+AGG - chr7_1:65946745-65946764 Msa1031350:CDS 30.0%
AGAGAATGTGAAATTTCTCT+CGG - chr7_1:65946829-65946848 Msa1031350:intron 30.0%
!!! CGTTAGTTATACCTTTTTTG+AGG - chr7_1:65947270-65947289 Msa1031350:intron 30.0%
CTTCAAATGAGAAGCTATTA+AGG - chr7_1:65947427-65947446 Msa1031350:intron 30.0%
!!! TATTTTAGTCTGTGACAAAC+GGG + chr7_1:65947454-65947473 None:intergenic 30.0%
!!! TATTTTAATCCGTAACAGAC+GGG - chr7_1:65948086-65948105 Msa1031350:intron 30.0%
TTTAGAGGAGAGTGAAAATA+TGG + chr7_1:65948486-65948505 None:intergenic 30.0%
AAAAGATGGGAAAAAAACCA+AGG - chr7_1:65949149-65949168 Msa1031350:intron 30.0%
AAAGATGGGAAAAAAACCAA+GGG - chr7_1:65949150-65949169 Msa1031350:intron 30.0%
TTTAGAGGAGAGAGAAAATA+TGG + chr7_1:65947880-65947899 None:intergenic 30.0%
TGCATAAAATATGTAAGGTC+CGG - chr7_1:65949732-65949751 Msa1031350:intron 30.0%
GGTTCTTCTAATATCTGATT+AGG + chr7_1:65949920-65949939 None:intergenic 30.0%
AAACATAGTAGATCTGAGAA+GGG + chr7_1:65950051-65950070 None:intergenic 30.0%
AGGTATTTGTGCATTACTTT+AGG - chr7_1:65950138-65950157 Msa1031350:intron 30.0%
GAACTTAAAGTTAGAGTTCA+TGG + chr7_1:65950283-65950302 None:intergenic 30.0%
! GAACTCTAACTTTAAGTTCA+TGG - chr7_1:65950284-65950303 Msa1031350:intron 30.0%
! ACTCTAACTTTAAGTTCATG+GGG - chr7_1:65950286-65950305 Msa1031350:intron 30.0%
GGTTTGAATTTCACGATTAT+TGG - chr7_1:65950464-65950483 Msa1031350:intron 30.0%
GCGTTAATGTATGCTTTAAT+TGG - chr7_1:65950547-65950566 Msa1031350:intron 30.0%
ATGTATAGACATTAACACAC+GGG + chr7_1:65950646-65950665 None:intergenic 30.0%
!! AAACTCTGAGATTAATGAGT+TGG - chr7_1:65950961-65950980 Msa1031350:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG - chr7_1:65950973-65950992 Msa1031350:intron 30.0%
GATCCAAATATGGTTAATGA+TGG - chr7_1:65950983-65951002 Msa1031350:intron 30.0%
! ATGGTTAATGATGGAATGTT+AGG - chr7_1:65950992-65951011 Msa1031350:intron 30.0%
! TGGTTAATGATGGAATGTTA+GGG - chr7_1:65950993-65951012 Msa1031350:intron 30.0%
GAATACTCAATTTGTGAACT+CGG - chr7_1:65951084-65951103 Msa1031350:intron 30.0%
AAAAGAACAAACAGCAAACT+CGG + chr7_1:65951177-65951196 None:intergenic 30.0%
!!! AGTTTGCTGTTTGTTCTTTT+TGG - chr7_1:65951177-65951196 Msa1031350:intron 30.0%
! AGATTTTTCTTTACCATCCA+TGG - chr7_1:65951513-65951532 Msa1031350:intron 30.0%
! TCTCTCTTCAAGTTTAAATC+CGG - chr7_1:65951799-65951818 Msa1031350:intron 30.0%
AACAAATTTGCAGAAGTTCT+TGG - chr7_1:65952014-65952033 Msa1031350:intron 30.0%
ACAAATTTGCAGAAGTTCTT+GGG - chr7_1:65952015-65952034 Msa1031350:intron 30.0%
!!! CATTTTATCTCGCTATTTCT+AGG - chr7_1:65952122-65952141 Msa1031350:intron 30.0%
!! TTTCTAGGTTGATGTTAATC+TGG - chr7_1:65952137-65952156 Msa1031350:intron 30.0%
AACAAACTAAGCACTACGAT+TGG + chr7_1:65944490-65944509 None:intergenic 35.0%
! CAAGGCATTAAAACAATGAG+AGG + chr7_1:65944784-65944803 None:intergenic 35.0%
GTTTGCAAAGTCAAACATTG+AGG - chr7_1:65944817-65944836 Msa1031350:CDS 35.0%
TCTCAAAAGTCCTTGTCATT+CGG - chr7_1:65944930-65944949 Msa1031350:CDS 35.0%
TGTTAGTAAAGCCTTTGACA+AGG - chr7_1:65945108-65945127 Msa1031350:CDS 35.0%
TAAGTGGAGTTATCTACAAG+CGG - chr7_1:65945132-65945151 Msa1031350:CDS 35.0%
TATGAGCACGATAAGTATCT+TGG - chr7_1:65945592-65945611 Msa1031350:intron 35.0%
! GAGATTGAGCATTCCAATTT+TGG + chr7_1:65945693-65945712 None:intergenic 35.0%
!! TTGGAGTTCTAAGATAATGG+TGG - chr7_1:65945790-65945809 Msa1031350:intron 35.0%
! TTAAGTTGTGCAATCTAGCA+TGG + chr7_1:65945908-65945927 None:intergenic 35.0%
! TCGACCATTATACGTTTTAC+TGG - chr7_1:65946017-65946036 Msa1031350:intron 35.0%
AAGATTAATGAATGGAGTGG+AGG + chr7_1:65946170-65946189 None:intergenic 35.0%
TGTTGACCTGAAAAACTTGT+AGG + chr7_1:65946216-65946235 None:intergenic 35.0%
!! GTTTTTGTTTATTTCGTCGG+CGG - chr7_1:65946431-65946450 Msa1031350:intron 35.0%
!! CGTGCTTTTGTTTATTTCGT+CGG - chr7_1:65946515-65946534 Msa1031350:intron 35.0%
!! TTTGATTTCGCAACTTGTTG+CGG + chr7_1:65946624-65946643 None:intergenic 35.0%
ATGACTAATCAGAGCTATCT+AGG + chr7_1:65946874-65946893 None:intergenic 35.0%
TACAAGAAGCAATGATGCAT+GGG + chr7_1:65946952-65946971 None:intergenic 35.0%
!!! TGAAGCTAGTTAGTTTTGTG+TGG + chr7_1:65949557-65949576 None:intergenic 35.0%
ATATCAAAGCTAAGTTCACG+AGG + chr7_1:65949706-65949725 None:intergenic 35.0%
!!! GACTTTTTTTTAGTGGTGAC+CGG + chr7_1:65949767-65949786 None:intergenic 35.0%
GAAACATAGTAGATCTGAGA+AGG + chr7_1:65950052-65950071 None:intergenic 35.0%
AATCACATCTATCTCGGATT+TGG - chr7_1:65950083-65950102 Msa1031350:intron 35.0%
! GTACTGTCATCGATTACTTT+AGG - chr7_1:65950182-65950201 Msa1031350:intron 35.0%
GCTTGTGACAAAACTTATGA+CGG + chr7_1:65950261-65950280 None:intergenic 35.0%
TAACACCCAAAAAAATGGGA+GGG + chr7_1:65950333-65950352 None:intergenic 35.0%
CTGAAGTAAGATGAAGTAAG+AGG - chr7_1:65950422-65950441 Msa1031350:intron 35.0%
TTTCACGATTATTGGCATGT+TGG - chr7_1:65950472-65950491 Msa1031350:intron 35.0%
TGTATAGACATTAACACACG+GGG + chr7_1:65950645-65950664 None:intergenic 35.0%
!! AGTCCACTAAGAAAGTACTT+TGG - chr7_1:65950670-65950689 Msa1031350:intron 35.0%
AGAAACAAAGACAGCAAACT+TGG + chr7_1:65951493-65951512 None:intergenic 35.0%
GAGTACTTGAAATCTGAGAA+GGG + chr7_1:65951544-65951563 None:intergenic 35.0%
! CTTCTCAGATTTCAAGTACT+CGG - chr7_1:65951543-65951562 Msa1031350:intron 35.0%
GTAAATAAGAACCCATGAGA+TGG + chr7_1:65951620-65951639 None:intergenic 35.0%
!!! CTCAACACGGTCAATTTTTT+TGG + chr7_1:65951749-65951768 None:intergenic 35.0%
TGGTTCTCTTTGTGGTATTT+GGG - chr7_1:65951836-65951855 Msa1031350:intron 35.0%
AAAAGGCTTGAATGGCAATT+TGG + chr7_1:65951896-65951915 None:intergenic 35.0%
! AAATTGCCATTCAAGCCTTT+TGG - chr7_1:65951895-65951914 Msa1031350:intron 35.0%
! AATTGCCATTCAAGCCTTTT+GGG - chr7_1:65951896-65951915 Msa1031350:intron 35.0%
ATCTTCATAACAAGCCCAAA+AGG + chr7_1:65951913-65951932 None:intergenic 35.0%
TTCTGATACTAATGGAACAC+AGG + chr7_1:65951996-65952015 None:intergenic 35.0%
!! AACTAGATCAACTGGTCTTT+GGG + chr7_1:65952089-65952108 None:intergenic 35.0%
CATAACAGAACTAGATCAAC+TGG + chr7_1:65952097-65952116 None:intergenic 35.0%
AATGTTGTTGACGAGGAAGA+AGG - chr7_1:65944374-65944393 Msa1031350:three_prime_UTR 40.0%
! ATTTTACTCTTTGCCTCGGT+TGG - chr7_1:65944518-65944537 Msa1031350:three_prime_UTR 40.0%
AACCTCTTGTCTCTATGGAT+AGG - chr7_1:65944615-65944634 Msa1031350:exon 40.0%
ACCTCTTGTCTCTATGGATA+GGG - chr7_1:65944616-65944635 Msa1031350:CDS 40.0%
TGACTTTGCAAACAATGCGA+GGG + chr7_1:65944810-65944829 None:intergenic 40.0%
TTGACTTTGCAAACAATGCG+AGG + chr7_1:65944811-65944830 None:intergenic 40.0%
TTTGTTTGAGCCGAATGACA+AGG + chr7_1:65944943-65944962 None:intergenic 40.0%
AATCAGAGATGCACTTATGG+AGG + chr7_1:65944967-65944986 None:intergenic 40.0%
GTGAATCAGAGATGCACTTA+TGG + chr7_1:65944970-65944989 None:intergenic 40.0%
!!! ATGCCACTTTTGTCTCTAGT+AGG - chr7_1:65944990-65945009 Msa1031350:CDS 40.0%
!!! TGCCACTTTTGTCTCTAGTA+GGG - chr7_1:65944991-65945010 Msa1031350:CDS 40.0%
TGCAAGACTAGAGGTAAAGA+AGG - chr7_1:65945064-65945083 Msa1031350:CDS 40.0%
AAGCCTTTGACAAGGTTAAG+TGG - chr7_1:65945116-65945135 Msa1031350:CDS 40.0%
ACTCCACTTAACCTTGTCAA+AGG + chr7_1:65945122-65945141 None:intergenic 40.0%
!! CAAGCGGTGATGGAAAAAAT+AGG - chr7_1:65945148-65945167 Msa1031350:CDS 40.0%
! GGGGGTTAAGTTTTTACATC+AGG - chr7_1:65945307-65945326 Msa1031350:intron 40.0%
GGATAAGCACGATATTGTCA+TGG + chr7_1:65945335-65945354 None:intergenic 40.0%
GACAATATCGTGCTTATCCA+CGG - chr7_1:65945336-65945355 Msa1031350:intron 40.0%
! GAAAACTGTTGTTTGCGAAG+AGG + chr7_1:65945401-65945420 None:intergenic 40.0%
! ATTCATGAGGGTTGTCACTT+CGG + chr7_1:65945445-65945464 None:intergenic 40.0%
GACAACCCTCATGAATATTC+TGG - chr7_1:65945449-65945468 Msa1031350:intron 40.0%
AAATCCTCCACACTTTCAGT+CGG - chr7_1:65945513-65945532 Msa1031350:intron 40.0%
TTGTATTCCGACTGAAAGTG+TGG + chr7_1:65945523-65945542 None:intergenic 40.0%
! CATTCATCTCTTAGGTGTTG+TGG - chr7_1:65945565-65945584 Msa1031350:intron 40.0%
TGTCTCTTCCTACCATAGAT+GGG + chr7_1:65945621-65945640 None:intergenic 40.0%
TTGTCTCTTCCTACCATAGA+TGG + chr7_1:65945622-65945641 None:intergenic 40.0%
GGATAAGATGACTGCTTGTA+AGG - chr7_1:65945837-65945856 Msa1031350:intron 40.0%
ATGACTGCTTGTAAGGATCA+CGG - chr7_1:65945844-65945863 Msa1031350:intron 40.0%
GCAGCCAGTAAAACGTATAA+TGG + chr7_1:65946024-65946043 None:intergenic 40.0%
!! TATACGTTTTACTGGCTGCA+AGG - chr7_1:65946025-65946044 Msa1031350:intron 40.0%
GAAAAACTTGTAGGCAGACA+TGG + chr7_1:65946207-65946226 None:intergenic 40.0%
! TGTCTGCCTACAAGTTTTTC+AGG - chr7_1:65946207-65946226 Msa1031350:intron 40.0%
AACTAATCACCTCACACTCT+AGG - chr7_1:65946252-65946271 Msa1031350:intron 40.0%
!! ATTTTCTGGCAAGATGACGT+CGG - chr7_1:65946458-65946477 Msa1031350:intron 40.0%
AAGGGAAAAAGGATGCAGAT+AGG - chr7_1:65946756-65946775 Msa1031350:CDS 40.0%
GGATGCAGATAGGTGATTAT+AGG - chr7_1:65946766-65946785 Msa1031350:CDS 40.0%
!!! CATGGGTTTTAGAGATTCCA+AGG + chr7_1:65946935-65946954 None:intergenic 40.0%
GTACAAGAAGCAATGATGCA+TGG + chr7_1:65946953-65946972 None:intergenic 40.0%
GTTACAAAATTAGGGTCCGT+TGG - chr7_1:65947629-65947648 Msa1031350:intron 40.0%
! AAATTAGGGTCCGTTGGTTA+CGG - chr7_1:65947635-65947654 Msa1031350:intron 40.0%
GCTTCAAATGAGAAGCTGTT+AGG - chr7_1:65947831-65947850 Msa1031350:intron 40.0%
GCTTCAAATGAGAAGCTGTT+AGG + chr7_1:65947831-65947850 None:intergenic 40.0%
! CATAAAGGGTCCGTTTGTTA+CGG + chr7_1:65948763-65948782 None:intergenic 40.0%
!!! TAGTTTTGTGTGGTTAGAGC+CGG + chr7_1:65949547-65949566 None:intergenic 40.0%
ATTCAGATTCACTCACTCTC+TGG - chr7_1:65949873-65949892 Msa1031350:intron 40.0%
AGAGAAAGAGTTGACGAAGA+CGG + chr7_1:65949954-65949973 None:intergenic 40.0%
! GATCTGTTGCTGCTGAATTT+TGG - chr7_1:65950160-65950179 Msa1031350:intron 40.0%
AACACCCAAAAAAATGGGAG+GGG + chr7_1:65950332-65950351 None:intergenic 40.0%
CTAACACCCAAAAAAATGGG+AGG + chr7_1:65950334-65950353 None:intergenic 40.0%
GGCTGAAGATGTAGATTTCT+TGG - chr7_1:65950443-65950462 Msa1031350:intron 40.0%
! GCTCCAAAGTACTTTCTTAG+TGG + chr7_1:65950676-65950695 None:intergenic 40.0%
ATTTGTGAACTCGGTTACCT+TGG - chr7_1:65951093-65951112 Msa1031350:intron 40.0%
GGTTATAAGACGGTAAACCA+AGG + chr7_1:65951113-65951132 None:intergenic 40.0%
CGAGTACTTGAAATCTGAGA+AGG + chr7_1:65951545-65951564 None:intergenic 40.0%
! TCAGATTTCAAGTACTCGGA+TGG - chr7_1:65951547-65951566 Msa1031350:intron 40.0%
GGTTCTTGTAAGAATTGGTG+CGG + chr7_1:65951642-65951661 None:intergenic 40.0%
GCGAAGGTTCTTGTAAGAAT+TGG + chr7_1:65951647-65951666 None:intergenic 40.0%
CTTCATAGTCTCGAGTTTCT+TGG + chr7_1:65951689-65951708 None:intergenic 40.0%
AGTCACGACTAGATTCTTTG+AGG + chr7_1:65951777-65951796 None:intergenic 40.0%
! CTCTTCAAGTTTAAATCCGG+TGG - chr7_1:65951802-65951821 Msa1031350:intron 40.0%
! CTGGTTCTCTTTGTGGTATT+TGG - chr7_1:65951835-65951854 Msa1031350:intron 40.0%
CTGCTCAATTCGCTATTTGA+AGG - chr7_1:65951859-65951878 Msa1031350:intron 40.0%
CAATTCGCTATTTGAAGGCA+AGG - chr7_1:65951864-65951883 Msa1031350:intron 40.0%
TTATGAAGATGAGCCATCGA+GGG - chr7_1:65951923-65951942 Msa1031350:intron 40.0%
AATGCCATGGAACAATCAGT+GGG + chr7_1:65951964-65951983 None:intergenic 40.0%
AAATGCCATGGAACAATCAG+TGG + chr7_1:65951965-65951984 None:intergenic 40.0%
! CAGGAAGTATAGAAATGCCA+TGG + chr7_1:65951977-65951996 None:intergenic 40.0%
!! GAACTAGATCAACTGGTCTT+TGG + chr7_1:65952090-65952109 None:intergenic 40.0%
GAAGAAACTCTCCTATGGTA+CGG + chr7_1:65952316-65952335 None:intergenic 40.0%
AAAGCGAAGAAACTCTCCTA+TGG + chr7_1:65952321-65952340 None:intergenic 40.0%
ATAGGAGAGTTTCTTCGCTT+TGG - chr7_1:65952320-65952339 Msa1031350:intron 40.0%
! GGTGTTGAATGTTGTTGACG+AGG - chr7_1:65944367-65944386 Msa1031350:three_prime_UTR 45.0%
TAGAGATTAGGTTCCAACCG+AGG + chr7_1:65944534-65944553 None:intergenic 45.0%
GTGCTAACCTCTTGTCTCTA+TGG - chr7_1:65944610-65944629 Msa1031350:exon 45.0%
CCTCTTGTCTCTATGGATAG+GGG - chr7_1:65944617-65944636 Msa1031350:CDS 45.0%
CAAACAATGCGAGGGAATCA+AGG + chr7_1:65944802-65944821 None:intergenic 45.0%
GTCCCTACTAGAGACAAAAG+TGG + chr7_1:65944996-65945015 None:intergenic 45.0%
GAGTTATCTACAAGCGGTGA+TGG - chr7_1:65945138-65945157 Msa1031350:CDS 45.0%
CTTGTCATCAACGATCGTGT+AGG - chr7_1:65945232-65945251 Msa1031350:CDS 45.0%
! AGACCACAAAGAGGTGCAAT+AGG + chr7_1:65945259-65945278 None:intergenic 45.0%
CCTCTTTGTGGTCTTTAACG+CGG - chr7_1:65945265-65945284 Msa1031350:intron 45.0%
CTCTTTGTGGTCTTTAACGC+GGG - chr7_1:65945266-65945285 Msa1031350:intron 45.0%
TCTTTGTGGTCTTTAACGCG+GGG - chr7_1:65945267-65945286 Msa1031350:intron 45.0%
AAGAGGAGATGGGTAATCGA+TGG + chr7_1:65945384-65945403 None:intergenic 45.0%
GTTGTTTGCGAAGAGGAGAT+GGG + chr7_1:65945394-65945413 None:intergenic 45.0%
! TGTTGTTTGCGAAGAGGAGA+TGG + chr7_1:65945395-65945414 None:intergenic 45.0%
! TATTCCGACTGAAAGTGTGG+AGG + chr7_1:65945520-65945539 None:intergenic 45.0%
TGGCAAGGTTAAAACCTTCG+TGG + chr7_1:65945888-65945907 None:intergenic 45.0%
TTGTGCAATCTAGCATGGCA+AGG + chr7_1:65945903-65945922 None:intergenic 45.0%
TGATTGGATCCTAGAGTGTG+AGG + chr7_1:65946264-65946283 None:intergenic 45.0%
!! TTTTCTGGCAAGATGACGTC+GGG - chr7_1:65946459-65946478 Msa1031350:intron 45.0%
CTCTTTCACTCATCGACGAT+GGG + chr7_1:65946813-65946832 None:intergenic 45.0%
TCTCTTTCACTCATCGACGA+TGG + chr7_1:65946814-65946833 None:intergenic 45.0%
!!! AACGAGCTCTTAGTTTTGCG+TGG + chr7_1:65947254-65947273 None:intergenic 45.0%
AATATAGGGCCCGTCTGTTA+CGG + chr7_1:65948098-65948117 None:intergenic 45.0%
GAAGCTGTTAAGAGCAGCTT+CGG + chr7_1:65948525-65948544 None:intergenic 45.0%
! AACCAAGGGCTCGTTTGTTA+CGG - chr7_1:65949164-65949183 Msa1031350:intron 45.0%
TGAGAAGGGTGAATACCTTG+AGG + chr7_1:65950037-65950056 None:intergenic 45.0%
!!! AACCCCCCTCCCATTTTTTT+GGG - chr7_1:65950325-65950344 Msa1031350:intron 45.0%
ACACCCAAAAAAATGGGAGG+GGG + chr7_1:65950331-65950350 None:intergenic 45.0%
!! TGTTGACTTGCTAGATGCCA+TGG - chr7_1:65950603-65950622 Msa1031350:intron 45.0%
! GAAAGATTCTTGGTGTGCCA+TGG + chr7_1:65950623-65950642 None:intergenic 45.0%
AACACACGGGGAAAGATTCT+TGG + chr7_1:65950633-65950652 None:intergenic 45.0%
CTTATCCCACTAAGTGAGGT+CGG + chr7_1:65951038-65951057 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+AGG + chr7_1:65951042-65951061 None:intergenic 45.0%
TCACTTAGTGGGATAAGGCT+TGG - chr7_1:65951041-65951060 Msa1031350:intron 45.0%
! TTAGTGGGATAAGGCTTGGT+TGG - chr7_1:65951045-65951064 Msa1031350:intron 45.0%
ATCTGAGAAGGGATATGCCA+TGG + chr7_1:65951533-65951552 None:intergenic 45.0%
AAGAGATACCCACAACAGTG+AGG + chr7_1:65951573-65951592 None:intergenic 45.0%
CTGTACAGCTATTGTCTGTG+AGG - chr7_1:65951594-65951613 Msa1031350:intron 45.0%
! CTTGGAAGCTTTGTCGATAG+AGG + chr7_1:65951671-65951690 None:intergenic 45.0%
!! CTTTGAGGCTAGTCTCAACA+CGG + chr7_1:65951762-65951781 None:intergenic 45.0%
CAAGTTTAAATCCGGTGGTG+TGG - chr7_1:65951807-65951826 Msa1031350:intron 45.0%
ACAAGCCCAAAAGGCTTGAA+TGG + chr7_1:65951904-65951923 None:intergenic 45.0%
GTTATGAAGATGAGCCATCG+AGG - chr7_1:65951922-65951941 Msa1031350:intron 45.0%
! TGATCCCACTGATTGTTCCA+TGG - chr7_1:65951957-65951976 Msa1031350:intron 45.0%
! AAAATCATGCTGGTCTCCCT+AGG + chr7_1:65952202-65952221 None:intergenic 45.0%
TTGCTTGTCTACCGTACCAT+AGG - chr7_1:65952302-65952321 Msa1031350:intron 45.0%
!!! CTTTTTTTTTTTTTTTTTAA+AGG - chr7_1:65944464-65944483 Msa1031350:three_prime_UTR 5.0%
!!! AAAAAAATTGATTTTTTTTA+CGG + chr7_1:65948165-65948184 None:intergenic 5.0%
!!! AAAAAAAATATTAATTTTAG+AGG + chr7_1:65948501-65948520 None:intergenic 5.0%
CCCCTATCCATAGAGACAAG+AGG + chr7_1:65944620-65944639 None:intergenic 50.0%
GGACCTATTGCACCTCTTTG+TGG - chr7_1:65945253-65945272 Msa1031350:intron 50.0%
CCGCGTTAAAGACCACAAAG+AGG + chr7_1:65945268-65945287 None:intergenic 50.0%
CTTTGTGGTCTTTAACGCGG+GGG - chr7_1:65945268-65945287 Msa1031350:intron 50.0%
TTTGTGGTCTTTAACGCGGG+GGG - chr7_1:65945269-65945288 Msa1031350:intron 50.0%
GTATCTTGGCCTCCCATCTA+TGG - chr7_1:65945606-65945625 Msa1031350:intron 50.0%
CTCTTCCTACCATAGATGGG+AGG + chr7_1:65945618-65945637 None:intergenic 50.0%
ACTGCTTGTAAGGATCACGG+TGG - chr7_1:65945847-65945866 Msa1031350:intron 50.0%
CTCAACTTTCGTGACCACGA+AGG - chr7_1:65945871-65945890 Msa1031350:intron 50.0%
! TCGTCGGCGGAAAGATTTTC+TGG - chr7_1:65946444-65946463 Msa1031350:intron 50.0%
! TTTCTGGCAAGATGACGTCG+GGG - chr7_1:65946460-65946479 Msa1031350:intron 50.0%
GTGATTTCGTCGTCTGAGTG+CGG + chr7_1:65946682-65946701 None:intergenic 50.0%
AGATTCCAAGGCTTTCTGCG+AGG + chr7_1:65946923-65946942 None:intergenic 50.0%
ATCCGTAACAAACGAGCCCT+TGG + chr7_1:65949169-65949188 None:intergenic 50.0%
TAAGGTCCGGAGTTCGAATC+CGG - chr7_1:65949745-65949764 Msa1031350:intron 50.0%
!!! ACGAAGACGGTGATGGGTTT+TGG + chr7_1:65949941-65949960 None:intergenic 50.0%
GAGTTGACGAAGACGGTGAT+GGG + chr7_1:65949947-65949966 None:intergenic 50.0%
AGAGTTGACGAAGACGGTGA+TGG + chr7_1:65949948-65949967 None:intergenic 50.0%
CAAGAACGTGAACGAAGCCA+AGG + chr7_1:65950009-65950028 None:intergenic 50.0%
CACGTTCTTGCGATTCCTCA+AGG - chr7_1:65950019-65950038 Msa1031350:intron 50.0%
!!! GAACCCCCCTCCCATTTTTT+TGG - chr7_1:65950324-65950343 Msa1031350:intron 50.0%
CACCCAAAAAAATGGGAGGG+GGG + chr7_1:65950330-65950349 None:intergenic 50.0%
ACTAAGTGAGGTCGGCTACA+TGG + chr7_1:65951030-65951049 None:intergenic 50.0%
ATGTAGCCGACCTCACTTAG+TGG - chr7_1:65951029-65951048 Msa1031350:intron 50.0%
TGTAGCCGACCTCACTTAGT+GGG - chr7_1:65951030-65951049 Msa1031350:intron 50.0%
CGACCTCACTTAGTGGGATA+AGG - chr7_1:65951036-65951055 Msa1031350:intron 50.0%
GAGAAGGGATATGCCATGGA+TGG + chr7_1:65951529-65951548 None:intergenic 50.0%
TTGTCTGTGAGGCCATCTCA+TGG - chr7_1:65951605-65951624 Msa1031350:intron 50.0%
TGTCTGTGAGGCCATCTCAT+GGG - chr7_1:65951606-65951625 Msa1031350:intron 50.0%
CTTTGTCGATAGAGGAGCGA+AGG + chr7_1:65951663-65951682 None:intergenic 50.0%
!! GGTTGCTCTGGTTCTCTTTG+TGG - chr7_1:65951828-65951847 Msa1031350:intron 50.0%
CATTACCTTGCAACCCTCGA+TGG + chr7_1:65951939-65951958 None:intergenic 50.0%
!! GATCAACTGGTCTTTGGGTC+TGG + chr7_1:65952084-65952103 None:intergenic 50.0%
TTGTGGTCTTTAACGCGGGG+GGG - chr7_1:65945270-65945289 Msa1031350:intron 55.0%
TCCACGGTACACGCATCTGT+CGG - chr7_1:65945352-65945371 Msa1031350:intron 55.0%
CTTGGCCTCCCATCTATGGT+AGG - chr7_1:65945610-65945629 Msa1031350:intron 55.0%
ATTTCGTCGTCTGAGTGCGG+CGG + chr7_1:65946679-65946698 None:intergenic 55.0%
AGCAACCTCGCAGAAAGCCT+TGG - chr7_1:65946915-65946934 Msa1031350:intron 55.0%
TGGTGACCGGATTCGAACTC+CGG + chr7_1:65949754-65949773 None:intergenic 55.0%
TCGGATGGCCTCACTGTTGT+GGG - chr7_1:65951562-65951581 Msa1031350:intron 55.0%
AACCAGAGCAACCACACCAC+CGG + chr7_1:65951821-65951840 None:intergenic 55.0%
ATGAGCCATCGAGGGTTGCA+AGG - chr7_1:65951931-65951950 Msa1031350:intron 55.0%
! TCTTGGGTTTTGCACCGCCA+AGG - chr7_1:65952031-65952050 Msa1031350:intron 55.0%
! CTTGGGTTTTGCACCGCCAA+GGG - chr7_1:65952032-65952051 Msa1031350:intron 55.0%
! TTGGGTTTTGCACCGCCAAG+GGG - chr7_1:65952033-65952052 Msa1031350:intron 55.0%
! CTGGTCTTTGGGTCTGGCAT+TGG + chr7_1:65952078-65952097 None:intergenic 55.0%
! TGCTGGTCTCCCTAGGAGAA+TGG + chr7_1:65952195-65952214 None:intergenic 55.0%
TGTGGTCTTTAACGCGGGGG+GGG - chr7_1:65945271-65945290 Msa1031350:intron 60.0%
TCCGACAGATGCGTGTACCG+TGG + chr7_1:65945356-65945375 None:intergenic 60.0%
ACGGTACACGCATCTGTCGG+AGG - chr7_1:65945355-65945374 Msa1031350:intron 60.0%
CTCGGATGGCCTCACTGTTG+TGG - chr7_1:65951561-65951580 Msa1031350:intron 60.0%
ATCCGGTGGTGTGGTTGCTC+TGG - chr7_1:65951816-65951835 Msa1031350:intron 60.0%
GTGGTCTTTAACGCGGGGGG+GGG - chr7_1:65945272-65945291 Msa1031350:intron 65.0%
TGGTCTTTAACGCGGGGGGG+GGG - chr7_1:65945273-65945292 Msa1031350:intron 65.0%
AGCTGTGAACGCACGCGCCT+TGG - chr7_1:65949989-65950008 Msa1031350:intron 65.0%
! TTTGCACCGCCAAGGGGTGC+AGG - chr7_1:65952039-65952058 Msa1031350:intron 65.0%
AGACCAGCACCTGCACCCCT+TGG + chr7_1:65952051-65952070 None:intergenic 65.0%
CTTTGGTCCCCTTCCCCCAG+AGG - chr7_1:65952337-65952356 Msa1031350:intron 65.0%
GGTCTTTAACGCGGGGGGGG+GGG - chr7_1:65945274-65945293 Msa1031350:intron 70.0%
GTCTTTAACGCGGGGGGGGG+GGG - chr7_1:65945275-65945294 Msa1031350:intron 70.0%
TCTTTAACGCGGGGGGGGGG+GGG - chr7_1:65945276-65945295 Msa1031350:intron 70.0%
CCAGCACCTGCACCCCTTGG+CGG + chr7_1:65952048-65952067 None:intergenic 70.0%
CTTTAACGCGGGGGGGGGGG+GGG - chr7_1:65945277-65945296 Msa1031350:intron 75.0%
TTTAACGCGGGGGGGGGGGG+GGG - chr7_1:65945278-65945297 Msa1031350:intron 75.0%
! CCGCCAAGGGGTGCAGGTGC+TGG - chr7_1:65952045-65952064 Msa1031350:intron 75.0%
! TTAACGCGGGGGGGGGGGGG+GGG - chr7_1:65945279-65945298 Msa1031350:intron 80.0%
! TAACGCGGGGGGGGGGGGGG+GGG - chr7_1:65945280-65945299 Msa1031350:intron 85.0%
! AACGCGGGGGGGGGGGGGGG+GGG - chr7_1:65945281-65945300 Msa1031350:intron 90.0%
! ACGCGGGGGGGGGGGGGGGG+GGG - chr7_1:65945282-65945301 Msa1031350:intron 95.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 65944353 65952364 65944353 ID=Msa1031350;Name=Msa1031350
chr7_1 mRNA 65944353 65952364 65944353 ID=Msa1031350-mRNA-1;Parent=Msa1031350;Name=Msa1031350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.33|0.66|0.5|0.33|3|263|269
chr7_1 exon 65944353 65945259 65944353 ID=Msa1031350-mRNA-1:exon:14719;Parent=Msa1031350-mRNA-1
chr7_1 exon 65946677 65946838 65946677 ID=Msa1031350-mRNA-1:exon:14718;Parent=Msa1031350-mRNA-1
chr7_1 exon 65952361 65952364 65952361 ID=Msa1031350-mRNA-1:exon:14717;Parent=Msa1031350-mRNA-1
chr7_1 CDS 65952361 65952364 65952361 ID=Msa1031350-mRNA-1:cds;Parent=Msa1031350-mRNA-1
chr7_1 CDS 65946677 65946838 65946677 ID=Msa1031350-mRNA-1:cds;Parent=Msa1031350-mRNA-1
chr7_1 CDS 65944616 65945259 65944616 ID=Msa1031350-mRNA-1:cds;Parent=Msa1031350-mRNA-1
chr7_1 three_prime_UTR 65944353 65944615 65944353 ID=Msa1031350-mRNA-1:three_prime_utr;Parent=Msa1031350-mRNA-1
Gene Sequence

>Msa1031350

ATGGATTCACTCACTCTCTGGTTAGTGCAATCAATTCAGAACCCTAATCAGATATTAGAAGAACCAAAACCCATCACCGTCTTCGTCAACTCTTTCTCTCATCGCGAATCGCTGAGCTGTGAACGCACGCGCCTTGGCTTCGTTCACGTTCTTGCGATTCCTCAAGGTTTTGGAAATTCAAGCAATTCTGATCAAGATCCAAGTTTGCTGTCTTTGTTTCTAGATTTTTCTTTACCATCCATGGCATATCCCTTCTCAGATTTCAAGTACTCGGATGGCCTCACTGTTGTGGGTATCTCTTTCTGTACAGCTATTGTCTGTGAGGCCATCTCATGGGTTCTTATTTACCGCACCAATTCTTACAAGAACCTTCGCTCCTCTATCGACAAAGCTTCCAAGAAACTCGAGACTATGAAGACAGACAACAACAAAATCAACATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACTAGCCTCAAAGAATCTAGTCGTGACTTGTCTCTCTTCAAGTTTAAATCCGGTGGTGTGGTTGCTCTGGTTCTCTTTGTGGTATTTGGGCTGCTCAATTCGCTATTTGAAGGCAAGGTAGTTGCCAAATTGCCATTCAAGCCTTTTGGGCTTGTTATGAAGATGAGCCATCGAGGGTTGCAAGGTAATGATCCCACTGATTGTTCCATGGCATTTCTATACTTCCTGTGTTCCATTAGTATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCGCCAAGGGGTGCAGGTGCTGGTCTCTTTCCAATGCCAGACCCAAAGACCAGTTGA

Protein sequence

>Msa1031350

MDSLTLWLVQSIQNPNQILEEPKPITVFVNSFSHRESLSCERTRLGFVHVLAIPQGFGNSSNSDQDPSLLSLFLDFSLPSMAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDNNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGLFPMPDPKTS*