Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070460 | KAF1886066.1 | 81.148 | 244 | 32 | 3 | 47 | 282 | 24 | 261 | 1.96e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070460 | sp|Q5I0H4|TMCO1_RAT | 46.927 | 179 | 92 | 2 | 103 | 279 | 5 | 182 | 1.10e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070460 | A0A6A5NF82 | 81.148 | 244 | 32 | 3 | 47 | 282 | 24 | 261 | 9.38e-133 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024400 | Msa1070460 | 0.814743 | 1.319023e-51 | -8.615850e-47 |
| Msa0063940 | Msa1070460 | 0.806228 | 9.110444e-50 | -8.615850e-47 |
| Msa0071410 | Msa1070460 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
| Msa0093850 | Msa1070460 | 0.806015 | 1.010046e-49 | -8.615850e-47 |
| Msa0607520 | Msa1070460 | 0.811938 | 5.450326e-51 | -8.615850e-47 |
| Msa0674480 | Msa1070460 | 0.819166 | 1.339575e-52 | -8.615850e-47 |
| Msa0690310 | Msa1070460 | 0.801186 | 1.014015e-48 | -8.615850e-47 |
| Msa0690540 | Msa1070460 | 0.824748 | 6.823273e-54 | -8.615850e-47 |
| Msa0755330 | Msa1070460 | 0.804421 | 2.177782e-49 | -8.615850e-47 |
| Msa0795750 | Msa1070460 | 0.839711 | 1.345294e-57 | -8.615850e-47 |
| Msa0833530 | Msa1070460 | 0.861685 | 8.622400e-64 | -8.615850e-47 |
| Msa0138360 | Msa1070460 | 0.817449 | 3.278365e-52 | -8.615850e-47 |
| Msa0163510 | Msa1070460 | 0.805151 | 1.533310e-49 | -8.615850e-47 |
| Msa0195640 | Msa1070460 | 0.837056 | 6.507909e-57 | -8.615850e-47 |
| Msa0202490 | Msa1070460 | 0.803002 | 4.291011e-49 | -8.615850e-47 |
| Msa1031350 | Msa1070460 | 0.986350 | 1.706281e-166 | -8.615850e-47 |
| Msa1070460 | Msa1101090 | 0.822849 | 1.901187e-53 | -8.615850e-47 |
| Msa1070460 | Msa1166660 | 0.808998 | 2.350734e-50 | -8.615850e-47 |
| Msa1070460 | Msa1341300 | 0.810170 | 1.317035e-50 | -8.615850e-47 |
| Msa1070460 | Msa1345100 | 0.803840 | 2.877432e-49 | -8.615850e-47 |
| Msa1070460 | Msa1371520 | 0.819349 | 1.217234e-52 | -8.615850e-47 |
| Msa1070460 | Msa1414820 | 0.816733 | 4.750197e-52 | -8.615850e-47 |
| Msa1070460 | Msa1422590 | 0.840880 | 6.659722e-58 | -8.615850e-47 |
| Msa1070460 | Msa1434740 | 0.832279 | 1.034901e-55 | -8.615850e-47 |
| Msa0341690 | Msa1070460 | 0.808656 | 2.782679e-50 | -8.615850e-47 |
| Msa0527190 | Msa1070460 | 0.826077 | 3.307059e-54 | -8.615850e-47 |
| Msa0579160 | Msa1070460 | 0.802835 | 4.646974e-49 | -8.615850e-47 |
| Msa0579220 | Msa1070460 | 0.806153 | 9.444667e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070460 | MtrunA17_Chr7g0252821 | 99.471 | 189 | 1 | 0 | 94 | 282 | 1 | 189 | 1.91e-136 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070460 | AT5G06660.1 | 83.069 | 189 | 28 | 2 | 98 | 282 | 8 | 196 | 1.42e-100 | 292 |
| Msa1070460 | AT3G12030.1 | 83.069 | 189 | 28 | 2 | 98 | 282 | 8 | 196 | 2.92e-93 | 274 |
Find 74 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTTCTCTTTGTGGTATT+TGG | 0.104469 | 7_2:-66640767 | Msa1070460:CDS |
| GGTTCTTCTAATATCTGATT+AGG | 0.231594 | 7_2:+66642685 | None:intergenic |
| AAAAGGCTTGAATGGCAATT+TGG | 0.263436 | 7_2:+66640709 | None:intergenic |
| AAATTGCCATTCAAGCCTTT+TGG | 0.268584 | 7_2:-66640707 | Msa1070460:CDS |
| TGGTTCTCTTTGTGGTATTT+GGG | 0.271042 | 7_2:-66640766 | Msa1070460:CDS |
| ACGAAGACGGTGATGGGTTT+TGG | 0.278053 | 7_2:+66642664 | None:intergenic |
| AACAAATTTGCAGAAGTTCT+TGG | 0.285687 | 7_2:-66640588 | Msa1070460:CDS |
| GAACTAGATCAACTGGTCTT+TGG | 0.297367 | 7_2:+66640515 | None:intergenic |
| TTTCTAGGTTGATGTTAATC+TGG | 0.297814 | 7_2:-66640465 | Msa1070460:three_prime_UTR |
| CTTCATAGTCTCGAGTTTCT+TGG | 0.298943 | 7_2:+66640916 | None:intergenic |
| GTTCTTCTAATATCTGATTA+GGG | 0.310016 | 7_2:+66642686 | None:intergenic |
| AACTAGATCAACTGGTCTTT+GGG | 0.342623 | 7_2:+66640516 | None:intergenic |
| CAAATTTGTTCTGATACTAA+TGG | 0.343691 | 7_2:+66640601 | None:intergenic |
| GGTTGCTCTGGTTCTCTTTG+TGG | 0.348482 | 7_2:-66640774 | Msa1070460:CDS |
| AGCTGTGAACGCACGCGCCT+TGG | 0.353951 | 7_2:-66642613 | Msa1070460:CDS |
| ATAGGAGAGTTTCTTCGCTT+TGG | 0.360635 | 7_2:-66640282 | Msa1070460:three_prime_UTR |
| CCGCCAAGGGGTGCAGGTGC+TGG | 0.379709 | 7_2:-66640557 | Msa1070460:CDS |
| ACAAATTTGCAGAAGTTCTT+GGG | 0.395345 | 7_2:-66640587 | Msa1070460:CDS |
| CTGGTCTTTGGGTCTGGCAT+TGG | 0.395377 | 7_2:+66640527 | None:intergenic |
| GCGAAGGTTCTTGTAAGAAT+TGG | 0.409536 | 7_2:+66640958 | None:intergenic |
| CATAACAGAACTAGATCAAC+TGG | 0.415941 | 7_2:+66640508 | None:intergenic |
| AGAAACAAAGACAGCAAACT+TGG | 0.427908 | 7_2:+66641112 | None:intergenic |
| ATTCAGATTCACTCACTCTC+TGG | 0.432865 | 7_2:-66642729 | Msa1070460:CDS |
| ATCCGGTGGTGTGGTTGCTC+TGG | 0.434250 | 7_2:-66640786 | Msa1070460:CDS |
| TTTGCACCGCCAAGGGGTGC+AGG | 0.441884 | 7_2:-66640563 | Msa1070460:CDS |
| TCTCTCTTCAAGTTTAAATC+CGG | 0.442713 | 7_2:-66640803 | Msa1070460:CDS |
| CTTGGAAGCTTTGTCGATAG+AGG | 0.450316 | 7_2:+66640934 | None:intergenic |
| CTCGGATGGCCTCACTGTTG+TGG | 0.453737 | 7_2:-66641041 | Msa1070460:CDS |
| CTGCTCAATTCGCTATTTGA+AGG | 0.455366 | 7_2:-66640743 | Msa1070460:CDS |
| GATCAACTGGTCTTTGGGTC+TGG | 0.458148 | 7_2:+66640521 | None:intergenic |
| CACGTTCTTGCGATTCCTCA+AGG | 0.462160 | 7_2:-66642583 | Msa1070460:intron |
| CCAGCACCTGCACCCCTTGG+CGG | 0.467860 | 7_2:+66640557 | None:intergenic |
| TCGGATGGCCTCACTGTTGT+GGG | 0.468742 | 7_2:-66641040 | Msa1070460:CDS |
| CTTCTCAGATTTCAAGTACT+CGG | 0.477023 | 7_2:-66641059 | Msa1070460:CDS |
| ACAAGCCCAAAAGGCTTGAA+TGG | 0.484472 | 7_2:+66640701 | None:intergenic |
| ATCTTCATAACAAGCCCAAA+AGG | 0.485077 | 7_2:+66640692 | None:intergenic |
| TTGTCTGTGAGGCCATCTCA+TGG | 0.486509 | 7_2:-66640997 | Msa1070460:CDS |
| TGCTGGTCTCCCTAGGAGAA+TGG | 0.489377 | 7_2:+66640410 | None:intergenic |
| CTCTTCAAGTTTAAATCCGG+TGG | 0.507122 | 7_2:-66640800 | Msa1070460:CDS |
| AGACCAGCACCTGCACCCCT+TGG | 0.507589 | 7_2:+66640554 | None:intergenic |
| TTGCTTGTCTACCGTACCAT+AGG | 0.517443 | 7_2:-66640300 | Msa1070460:three_prime_UTR |
| GAGTTGACGAAGACGGTGAT+GGG | 0.529556 | 7_2:+66642658 | None:intergenic |
| CGAGTACTTGAAATCTGAGA+AGG | 0.540066 | 7_2:+66641060 | None:intergenic |
| AGTCACGACTAGATTCTTTG+AGG | 0.544166 | 7_2:+66640828 | None:intergenic |
| AGAGTTGACGAAGACGGTGA+TGG | 0.546853 | 7_2:+66642657 | None:intergenic |
| AAAATCATGCTGGTCTCCCT+AGG | 0.547624 | 7_2:+66640403 | None:intergenic |
| CAATTCGCTATTTGAAGGCA+AGG | 0.549223 | 7_2:-66640738 | Msa1070460:CDS |
| TGTCTGTGAGGCCATCTCAT+GGG | 0.550860 | 7_2:-66640996 | Msa1070460:CDS |
| CAAGTTTAAATCCGGTGGTG+TGG | 0.561902 | 7_2:-66640795 | Msa1070460:CDS |
| AACCAGAGCAACCACACCAC+CGG | 0.570086 | 7_2:+66640784 | None:intergenic |
| TATAACAATTAAAATCATGC+TGG | 0.570708 | 7_2:+66640393 | None:intergenic |
| AAAGCGAAGAAACTCTCCTA+TGG | 0.571285 | 7_2:+66640284 | None:intergenic |
| TCAGATTTCAAGTACTCGGA+TGG | 0.574798 | 7_2:-66641055 | Msa1070460:CDS |
| AAATGCCATGGAACAATCAG+TGG | 0.579830 | 7_2:+66640640 | None:intergenic |
| ATGAGCCATCGAGGGTTGCA+AGG | 0.585212 | 7_2:-66640671 | Msa1070460:CDS |
| CTTTGTCGATAGAGGAGCGA+AGG | 0.585269 | 7_2:+66640942 | None:intergenic |
| CATTACCTTGCAACCCTCGA+TGG | 0.592832 | 7_2:+66640666 | None:intergenic |
| TGATCCCACTGATTGTTCCA+TGG | 0.598157 | 7_2:-66640645 | Msa1070460:CDS |
| GTAAATAAGAACCCATGAGA+TGG | 0.599701 | 7_2:+66640985 | None:intergenic |
| TTCTGATACTAATGGAACAC+AGG | 0.602611 | 7_2:+66640609 | None:intergenic |
| CTGTACAGCTATTGTCTGTG+AGG | 0.606267 | 7_2:-66641008 | Msa1070460:CDS |
| ATCTGAGAAGGGATATGCCA+TGG | 0.607371 | 7_2:+66641072 | None:intergenic |
| CAGGAAGTATAGAAATGCCA+TGG | 0.612214 | 7_2:+66640628 | None:intergenic |
| CAAGAACGTGAACGAAGCCA+AGG | 0.613216 | 7_2:+66642596 | None:intergenic |
| GAGAAGGGATATGCCATGGA+TGG | 0.614420 | 7_2:+66641076 | None:intergenic |
| GAAGAAACTCTCCTATGGTA+CGG | 0.615810 | 7_2:+66640289 | None:intergenic |
| TTATGAAGATGAGCCATCGA+GGG | 0.622078 | 7_2:-66640679 | Msa1070460:CDS |
| AGAGAAAGAGTTGACGAAGA+CGG | 0.626905 | 7_2:+66642651 | None:intergenic |
| GAGTACTTGAAATCTGAGAA+GGG | 0.629348 | 7_2:+66641061 | None:intergenic |
| GGTTCTTGTAAGAATTGGTG+CGG | 0.654185 | 7_2:+66640963 | None:intergenic |
| CTTTGAGGCTAGTCTCAACA+CGG | 0.657831 | 7_2:+66640843 | None:intergenic |
| AATGCCATGGAACAATCAGT+GGG | 0.668389 | 7_2:+66640641 | None:intergenic |
| GTTATGAAGATGAGCCATCG+AGG | 0.685544 | 7_2:-66640680 | Msa1070460:CDS |
| AAGAGATACCCACAACAGTG+AGG | 0.718334 | 7_2:+66641032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAAAATATATGAAGT+TGG | - | chr7_2:66641247-66641266 | Msa1070460:intron | 10.0% |
| !! | AATAAATTCATTAAAATTGT+AGG | + | chr7_2:66641349-66641368 | None:intergenic | 10.0% |
| !!! | ACACTTTTTTTTTTTTTTGA+AGG | + | chr7_2:66640272-66640291 | None:intergenic | 15.0% |
| !! | TTATAGATATACTTAACAAA+CGG | - | chr7_2:66641141-66641160 | Msa1070460:CDS | 15.0% |
| !! | ATAAAAAATGAATATAGGTT+TGG | + | chr7_2:66641812-66641831 | None:intergenic | 15.0% |
| !! | AGAACATAAAAAATGAATAT+AGG | + | chr7_2:66641817-66641836 | None:intergenic | 15.0% |
| !!! | ATTTTTTATGTTCTATAAAC+AGG | - | chr7_2:66641823-66641842 | Msa1070460:intron | 15.0% |
| !!! | ATTTTAGTTTTATGGTTATT+TGG | - | chr7_2:66642675-66642694 | Msa1070460:CDS | 15.0% |
| !!! | CTTTTTTTTTTTTTTGAAGG+AGG | + | chr7_2:66640269-66640288 | None:intergenic | 20.0% |
| !!! | TACATTAACGCTTAATTTTT+TGG | + | chr7_2:66640962-66640981 | None:intergenic | 20.0% |
| !! | TAGTATGATAGAAAATAACA+TGG | - | chr7_2:66641166-66641185 | Msa1070460:intron | 20.0% |
| !! | ATAGAAAATAACATGGAAAA+TGG | - | chr7_2:66641173-66641192 | Msa1070460:intron | 20.0% |
| !! | TAGAAAATAACATGGAAAAT+GGG | - | chr7_2:66641174-66641193 | Msa1070460:intron | 20.0% |
| !! | AAAACAATTTGGTTATAAGA+CGG | + | chr7_2:66641547-66641566 | None:intergenic | 20.0% |
| !! | TGGAGTATAAAGTTATAAAT+AGG | + | chr7_2:66641792-66641811 | None:intergenic | 20.0% |
| !! | TATAACAATTAAAATCATGC+TGG | + | chr7_2:66642636-66642655 | None:intergenic | 20.0% |
| !!! | AGAAGTCAATTTTAGTTTTA+TGG | - | chr7_2:66642667-66642686 | Msa1070460:CDS | 20.0% |
| ! | GTTCTTCTAATATCTGATTA+GGG | + | chr7_2:66640343-66640362 | None:intergenic | 25.0% |
| ! | ATTCTTAATCACATCTATCT+CGG | - | chr7_2:66640501-66640520 | Msa1070460:three_prime_UTR | 25.0% |
| !!! | TCCTGTTGATTTAATTTTGA+AGG | - | chr7_2:66640542-66640561 | Msa1070460:CDS | 25.0% |
| ! | ACCTTCAAAATTAAATCAAC+AGG | + | chr7_2:66640546-66640565 | None:intergenic | 25.0% |
| !! | AACTCTAACTTTAAGTTCAT+GGG | - | chr7_2:66640709-66640728 | Msa1070460:CDS | 25.0% |
| ! | TAATGTATGCTTTAATTGGT+TGG | - | chr7_2:66640975-66640994 | Msa1070460:CDS | 25.0% |
| ! | TATGTATAGACATTAACACA+CGG | + | chr7_2:66641071-66641090 | None:intergenic | 25.0% |
| !! | GTTTTATCTTCTTACTTGAA+AGG | - | chr7_2:66641298-66641317 | Msa1070460:intron | 25.0% |
| ! | ATTCCATCATTAACCATATT+TGG | + | chr7_2:66641413-66641432 | None:intergenic | 25.0% |
| ! | ATATACTGCTCAAAACAATT+TGG | + | chr7_2:66641558-66641577 | None:intergenic | 25.0% |
| ! | ATATGTTTAACAGTAAGTAC+AGG | - | chr7_2:66641574-66641593 | Msa1070460:intron | 25.0% |
| ! | TCTTTCTAACATAACATAAG+AGG | - | chr7_2:66641657-66641676 | Msa1070460:intron | 25.0% |
| ! | TCTTTCTTAACATAACATAG+AGG | - | chr7_2:66641699-66641718 | Msa1070460:intron | 25.0% |
| ! | AAGTAGCAAAGATATGATTA+TGG | - | chr7_2:66641738-66641757 | Msa1070460:intron | 25.0% |
| ! | CAAAGATATGATTATGGATT+AGG | - | chr7_2:66641744-66641763 | Msa1070460:intron | 25.0% |
| ! | TGAAGTTTGTGTATTTATAC+AGG | - | chr7_2:66641860-66641879 | Msa1070460:intron | 25.0% |
| !! | TTGTGTATTTATACAGGTTT+TGG | - | chr7_2:66641866-66641885 | Msa1070460:intron | 25.0% |
| !! | CAAATTTGTTCTGATACTAA+TGG | + | chr7_2:66642428-66642447 | None:intergenic | 25.0% |
| !! | ATATTTTATTCCATTCTCCT+AGG | - | chr7_2:66642606-66642625 | Msa1070460:CDS | 25.0% |
| !! | TATTTTATTCCATTCTCCTA+GGG | - | chr7_2:66642607-66642626 | Msa1070460:CDS | 25.0% |
| GGTTCTTCTAATATCTGATT+AGG | + | chr7_2:66640344-66640363 | None:intergenic | 30.0% | |
| AAACATAGTAGATCTGAGAA+GGG | + | chr7_2:66640475-66640494 | None:intergenic | 30.0% | |
| AGGTATTTGTGCATTACTTT+AGG | - | chr7_2:66640562-66640581 | Msa1070460:CDS | 30.0% | |
| GAACTTAAAGTTAGAGTTCA+TGG | + | chr7_2:66640707-66640726 | None:intergenic | 30.0% | |
| ! | GAACTCTAACTTTAAGTTCA+TGG | - | chr7_2:66640708-66640727 | Msa1070460:CDS | 30.0% |
| ! | ACTCTAACTTTAAGTTCATG+GGG | - | chr7_2:66640710-66640729 | Msa1070460:CDS | 30.0% |
| AATCTAACACCCGAAAAAAT+GGG | + | chr7_2:66640761-66640780 | None:intergenic | 30.0% | |
| AAATCTAACACCCGAAAAAA+TGG | + | chr7_2:66640762-66640781 | None:intergenic | 30.0% | |
| GGTTTGAATTTCACGATTAT+TGG | - | chr7_2:66640888-66640907 | Msa1070460:CDS | 30.0% | |
| GCGTTAATGTATGCTTTAAT+TGG | - | chr7_2:66640971-66640990 | Msa1070460:CDS | 30.0% | |
| ATGTATAGACATTAACACAC+GGG | + | chr7_2:66641070-66641089 | None:intergenic | 30.0% | |
| !! | AAACTCTGAGATTAATGAGT+TGG | - | chr7_2:66641385-66641404 | Msa1070460:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr7_2:66641397-66641416 | Msa1070460:intron | 30.0% |
| GATCCAAATATGGTTAATGA+TGG | - | chr7_2:66641407-66641426 | Msa1070460:intron | 30.0% | |
| ! | ATGGTTAATGATGGAATGTT+AGG | - | chr7_2:66641416-66641435 | Msa1070460:intron | 30.0% |
| ! | TGGTTAATGATGGAATGTTA+GGG | - | chr7_2:66641417-66641436 | Msa1070460:intron | 30.0% |
| GAATACTCAATTTGTGAACT+CGG | - | chr7_2:66641508-66641527 | Msa1070460:intron | 30.0% | |
| AAAAGAACAAACAGCAAACT+CGG | + | chr7_2:66641601-66641620 | None:intergenic | 30.0% | |
| !!! | AGTTTGCTGTTTGTTCTTTT+TGG | - | chr7_2:66641601-66641620 | Msa1070460:intron | 30.0% |
| ! | AGATTTTTCTTTACCATCCA+TGG | - | chr7_2:66641937-66641956 | Msa1070460:intron | 30.0% |
| ! | TCTCTCTTCAAGTTTAAATC+CGG | - | chr7_2:66642223-66642242 | Msa1070460:intron | 30.0% |
| AACAAATTTGCAGAAGTTCT+TGG | - | chr7_2:66642438-66642457 | Msa1070460:intron | 30.0% | |
| ACAAATTTGCAGAAGTTCTT+GGG | - | chr7_2:66642439-66642458 | Msa1070460:intron | 30.0% | |
| !!! | CATTTTATCTCGCTATTTCT+AGG | - | chr7_2:66642546-66642565 | Msa1070460:intron | 30.0% |
| !! | TTTCTAGGTTGATGTTAATC+TGG | - | chr7_2:66642561-66642580 | Msa1070460:intron | 30.0% |
| GAAACATAGTAGATCTGAGA+AGG | + | chr7_2:66640476-66640495 | None:intergenic | 35.0% | |
| AATCACATCTATCTCGGATT+TGG | - | chr7_2:66640507-66640526 | Msa1070460:exon | 35.0% | |
| ! | GTACTGTCATCGATTACTTT+AGG | - | chr7_2:66640606-66640625 | Msa1070460:CDS | 35.0% |
| GCTTGTGACAAAACTTATGA+CGG | + | chr7_2:66640685-66640704 | None:intergenic | 35.0% | |
| CTGAAGTAAGATGAAGTAAG+AGG | - | chr7_2:66640846-66640865 | Msa1070460:CDS | 35.0% | |
| TTTCACGATTATTGGCATGT+TGG | - | chr7_2:66640896-66640915 | Msa1070460:CDS | 35.0% | |
| TGTATAGACATTAACACACG+GGG | + | chr7_2:66641069-66641088 | None:intergenic | 35.0% | |
| !! | AGTCCACTAAGAAAGTACTT+TGG | - | chr7_2:66641094-66641113 | Msa1070460:CDS | 35.0% |
| AGAAACAAAGACAGCAAACT+TGG | + | chr7_2:66641917-66641936 | None:intergenic | 35.0% | |
| GAGTACTTGAAATCTGAGAA+GGG | + | chr7_2:66641968-66641987 | None:intergenic | 35.0% | |
| ! | CTTCTCAGATTTCAAGTACT+CGG | - | chr7_2:66641967-66641986 | Msa1070460:intron | 35.0% |
| GTAAATAAGAACCCATGAGA+TGG | + | chr7_2:66642044-66642063 | None:intergenic | 35.0% | |
| !!! | CTCAACACGGTCAATTTTTT+TGG | + | chr7_2:66642173-66642192 | None:intergenic | 35.0% |
| TGGTTCTCTTTGTGGTATTT+GGG | - | chr7_2:66642260-66642279 | Msa1070460:intron | 35.0% | |
| AAAAGGCTTGAATGGCAATT+TGG | + | chr7_2:66642320-66642339 | None:intergenic | 35.0% | |
| ! | AAATTGCCATTCAAGCCTTT+TGG | - | chr7_2:66642319-66642338 | Msa1070460:intron | 35.0% |
| ! | AATTGCCATTCAAGCCTTTT+GGG | - | chr7_2:66642320-66642339 | Msa1070460:intron | 35.0% |
| ATCTTCATAACAAGCCCAAA+AGG | + | chr7_2:66642337-66642356 | None:intergenic | 35.0% | |
| TTCTGATACTAATGGAACAC+AGG | + | chr7_2:66642420-66642439 | None:intergenic | 35.0% | |
| !! | AACTAGATCAACTGGTCTTT+GGG | + | chr7_2:66642513-66642532 | None:intergenic | 35.0% |
| CATAACAGAACTAGATCAAC+TGG | + | chr7_2:66642521-66642540 | None:intergenic | 35.0% | |
| ATTCAGATTCACTCACTCTC+TGG | - | chr7_2:66640297-66640316 | Msa1070460:three_prime_UTR | 40.0% | |
| AGAGAAAGAGTTGACGAAGA+CGG | + | chr7_2:66640378-66640397 | None:intergenic | 40.0% | |
| ! | GATCTGTTGCTGCTGAATTT+TGG | - | chr7_2:66640584-66640603 | Msa1070460:CDS | 40.0% |
| TAACACCCGAAAAAATGGGA+GGG | + | chr7_2:66640757-66640776 | None:intergenic | 40.0% | |
| GGCTGAAGATGTAGATTTCT+TGG | - | chr7_2:66640867-66640886 | Msa1070460:CDS | 40.0% | |
| ! | GCTCCAAAGTACTTTCTTAG+TGG | + | chr7_2:66641100-66641119 | None:intergenic | 40.0% |
| ATTTGTGAACTCGGTTACCT+TGG | - | chr7_2:66641517-66641536 | Msa1070460:intron | 40.0% | |
| GGTTATAAGACGGTAAACCA+AGG | + | chr7_2:66641537-66641556 | None:intergenic | 40.0% | |
| CGAGTACTTGAAATCTGAGA+AGG | + | chr7_2:66641969-66641988 | None:intergenic | 40.0% | |
| ! | TCAGATTTCAAGTACTCGGA+TGG | - | chr7_2:66641971-66641990 | Msa1070460:intron | 40.0% |
| GGTTCTTGTAAGAATTGGTG+CGG | + | chr7_2:66642066-66642085 | None:intergenic | 40.0% | |
| GCGAAGGTTCTTGTAAGAAT+TGG | + | chr7_2:66642071-66642090 | None:intergenic | 40.0% | |
| CTTCATAGTCTCGAGTTTCT+TGG | + | chr7_2:66642113-66642132 | None:intergenic | 40.0% | |
| AGTCACGACTAGATTCTTTG+AGG | + | chr7_2:66642201-66642220 | None:intergenic | 40.0% | |
| ! | CTCTTCAAGTTTAAATCCGG+TGG | - | chr7_2:66642226-66642245 | Msa1070460:intron | 40.0% |
| ! | CTGGTTCTCTTTGTGGTATT+TGG | - | chr7_2:66642259-66642278 | Msa1070460:intron | 40.0% |
| CTGCTCAATTCGCTATTTGA+AGG | - | chr7_2:66642283-66642302 | Msa1070460:intron | 40.0% | |
| CAATTCGCTATTTGAAGGCA+AGG | - | chr7_2:66642288-66642307 | Msa1070460:intron | 40.0% | |
| TTATGAAGATGAGCCATCGA+GGG | - | chr7_2:66642347-66642366 | Msa1070460:intron | 40.0% | |
| AATGCCATGGAACAATCAGT+GGG | + | chr7_2:66642388-66642407 | None:intergenic | 40.0% | |
| AAATGCCATGGAACAATCAG+TGG | + | chr7_2:66642389-66642408 | None:intergenic | 40.0% | |
| ! | CAGGAAGTATAGAAATGCCA+TGG | + | chr7_2:66642401-66642420 | None:intergenic | 40.0% |
| !! | GAACTAGATCAACTGGTCTT+TGG | + | chr7_2:66642514-66642533 | None:intergenic | 40.0% |
| GAAGAAACTCTCCTATGGTA+CGG | + | chr7_2:66642740-66642759 | None:intergenic | 40.0% | |
| AAAGCGAAGAAACTCTCCTA+TGG | + | chr7_2:66642745-66642764 | None:intergenic | 40.0% | |
| ATAGGAGAGTTTCTTCGCTT+TGG | - | chr7_2:66642744-66642763 | Msa1070460:CDS | 40.0% | |
| TGAGAAGGGTGAATACCTTG+AGG | + | chr7_2:66640461-66640480 | None:intergenic | 45.0% | |
| AACACCCGAAAAAATGGGAG+GGG | + | chr7_2:66640756-66640775 | None:intergenic | 45.0% | |
| CTAACACCCGAAAAAATGGG+AGG | + | chr7_2:66640758-66640777 | None:intergenic | 45.0% | |
| !! | TGTTGACTTGCTAGATGCCA+TGG | - | chr7_2:66641027-66641046 | Msa1070460:CDS | 45.0% |
| ! | GAAAGATTCTTGGTGTGCCA+TGG | + | chr7_2:66641047-66641066 | None:intergenic | 45.0% |
| AACACACGGGGAAAGATTCT+TGG | + | chr7_2:66641057-66641076 | None:intergenic | 45.0% | |
| CTTATCCCACTAAGTGAGGT+CGG | + | chr7_2:66641462-66641481 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+AGG | + | chr7_2:66641466-66641485 | None:intergenic | 45.0% |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr7_2:66641465-66641484 | Msa1070460:intron | 45.0% | |
| ! | TTAGTGGGATAAGGCTTGGT+TGG | - | chr7_2:66641469-66641488 | Msa1070460:intron | 45.0% |
| ATCTGAGAAGGGATATGCCA+TGG | + | chr7_2:66641957-66641976 | None:intergenic | 45.0% | |
| AAGAGATACCCACAACAGTG+AGG | + | chr7_2:66641997-66642016 | None:intergenic | 45.0% | |
| CTGTACAGCTATTGTCTGTG+AGG | - | chr7_2:66642018-66642037 | Msa1070460:intron | 45.0% | |
| ! | CTTGGAAGCTTTGTCGATAG+AGG | + | chr7_2:66642095-66642114 | None:intergenic | 45.0% |
| !! | CTTTGAGGCTAGTCTCAACA+CGG | + | chr7_2:66642186-66642205 | None:intergenic | 45.0% |
| CAAGTTTAAATCCGGTGGTG+TGG | - | chr7_2:66642231-66642250 | Msa1070460:intron | 45.0% | |
| ACAAGCCCAAAAGGCTTGAA+TGG | + | chr7_2:66642328-66642347 | None:intergenic | 45.0% | |
| GTTATGAAGATGAGCCATCG+AGG | - | chr7_2:66642346-66642365 | Msa1070460:intron | 45.0% | |
| ! | TGATCCCACTGATTGTTCCA+TGG | - | chr7_2:66642381-66642400 | Msa1070460:intron | 45.0% |
| ! | AAAATCATGCTGGTCTCCCT+AGG | + | chr7_2:66642626-66642645 | None:intergenic | 45.0% |
| TTGCTTGTCTACCGTACCAT+AGG | - | chr7_2:66642726-66642745 | Msa1070460:CDS | 45.0% | |
| !!! | ACGAAGACGGTGATGGGTTT+TGG | + | chr7_2:66640365-66640384 | None:intergenic | 50.0% |
| GAGTTGACGAAGACGGTGAT+GGG | + | chr7_2:66640371-66640390 | None:intergenic | 50.0% | |
| AGAGTTGACGAAGACGGTGA+TGG | + | chr7_2:66640372-66640391 | None:intergenic | 50.0% | |
| CAAGAACGTGAACGAAGCCA+AGG | + | chr7_2:66640433-66640452 | None:intergenic | 50.0% | |
| CACGTTCTTGCGATTCCTCA+AGG | - | chr7_2:66640443-66640462 | Msa1070460:three_prime_UTR | 50.0% | |
| ACACCCGAAAAAATGGGAGG+GGG | + | chr7_2:66640755-66640774 | None:intergenic | 50.0% | |
| ACTAAGTGAGGTCGGCTACA+TGG | + | chr7_2:66641454-66641473 | None:intergenic | 50.0% | |
| ATGTAGCCGACCTCACTTAG+TGG | - | chr7_2:66641453-66641472 | Msa1070460:intron | 50.0% | |
| TGTAGCCGACCTCACTTAGT+GGG | - | chr7_2:66641454-66641473 | Msa1070460:intron | 50.0% | |
| CGACCTCACTTAGTGGGATA+AGG | - | chr7_2:66641460-66641479 | Msa1070460:intron | 50.0% | |
| GAGAAGGGATATGCCATGGA+TGG | + | chr7_2:66641953-66641972 | None:intergenic | 50.0% | |
| TTGTCTGTGAGGCCATCTCA+TGG | - | chr7_2:66642029-66642048 | Msa1070460:intron | 50.0% | |
| TGTCTGTGAGGCCATCTCAT+GGG | - | chr7_2:66642030-66642049 | Msa1070460:intron | 50.0% | |
| CTTTGTCGATAGAGGAGCGA+AGG | + | chr7_2:66642087-66642106 | None:intergenic | 50.0% | |
| !! | GGTTGCTCTGGTTCTCTTTG+TGG | - | chr7_2:66642252-66642271 | Msa1070460:intron | 50.0% |
| CATTACCTTGCAACCCTCGA+TGG | + | chr7_2:66642363-66642382 | None:intergenic | 50.0% | |
| !! | GATCAACTGGTCTTTGGGTC+TGG | + | chr7_2:66642508-66642527 | None:intergenic | 50.0% |
| !!! | GAGCCCCCCTCCCATTTTTT+CGG | - | chr7_2:66640748-66640767 | Msa1070460:CDS | 55.0% |
| !!! | AGCCCCCCTCCCATTTTTTC+GGG | - | chr7_2:66640749-66640768 | Msa1070460:CDS | 55.0% |
| CACCCGAAAAAATGGGAGGG+GGG | + | chr7_2:66640754-66640773 | None:intergenic | 55.0% | |
| TCGGATGGCCTCACTGTTGT+GGG | - | chr7_2:66641986-66642005 | Msa1070460:intron | 55.0% | |
| AACCAGAGCAACCACACCAC+CGG | + | chr7_2:66642245-66642264 | None:intergenic | 55.0% | |
| ATGAGCCATCGAGGGTTGCA+AGG | - | chr7_2:66642355-66642374 | Msa1070460:intron | 55.0% | |
| ! | TCTTGGGTTTTGCACCGCCA+AGG | - | chr7_2:66642455-66642474 | Msa1070460:intron | 55.0% |
| ! | CTTGGGTTTTGCACCGCCAA+GGG | - | chr7_2:66642456-66642475 | Msa1070460:intron | 55.0% |
| ! | TTGGGTTTTGCACCGCCAAG+GGG | - | chr7_2:66642457-66642476 | Msa1070460:intron | 55.0% |
| ! | CTGGTCTTTGGGTCTGGCAT+TGG | + | chr7_2:66642502-66642521 | None:intergenic | 55.0% |
| ! | TGCTGGTCTCCCTAGGAGAA+TGG | + | chr7_2:66642619-66642638 | None:intergenic | 55.0% |
| CTCGGATGGCCTCACTGTTG+TGG | - | chr7_2:66641985-66642004 | Msa1070460:intron | 60.0% | |
| ATCCGGTGGTGTGGTTGCTC+TGG | - | chr7_2:66642240-66642259 | Msa1070460:intron | 60.0% | |
| AGCTGTGAACGCACGCGCCT+TGG | - | chr7_2:66640413-66640432 | Msa1070460:three_prime_UTR | 65.0% | |
| ! | TTTGCACCGCCAAGGGGTGC+AGG | - | chr7_2:66642463-66642482 | Msa1070460:intron | 65.0% |
| AGACCAGCACCTGCACCCCT+TGG | + | chr7_2:66642475-66642494 | None:intergenic | 65.0% | |
| CTTTGGTCCCCTTCCCCCAG+AGG | - | chr7_2:66642761-66642780 | Msa1070460:CDS | 65.0% | |
| CCAGCACCTGCACCCCTTGG+CGG | + | chr7_2:66642472-66642491 | None:intergenic | 70.0% | |
| ! | CCGCCAAGGGGTGCAGGTGC+TGG | - | chr7_2:66642469-66642488 | Msa1070460:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 66640260 | 66642788 | 66640260 | ID=Msa1070460;Name=Msa1070460 |
| chr7_2 | mRNA | 66640260 | 66642788 | 66640260 | ID=Msa1070460-mRNA-1;Parent=Msa1070460;Name=Msa1070460-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.5|1|1|1|2|263|282 |
| chr7_2 | exon | 66640260 | 66641166 | 66640260 | ID=Msa1070460-mRNA-1:exon:14292;Parent=Msa1070460-mRNA-1 |
| chr7_2 | exon | 66642584 | 66642788 | 66642584 | ID=Msa1070460-mRNA-1:exon:14291;Parent=Msa1070460-mRNA-1 |
| chr7_2 | CDS | 66642584 | 66642788 | 66642584 | ID=Msa1070460-mRNA-1:cds;Parent=Msa1070460-mRNA-1 |
| chr7_2 | CDS | 66640523 | 66641166 | 66640523 | ID=Msa1070460-mRNA-1:cds;Parent=Msa1070460-mRNA-1 |
| chr7_2 | three_prime_UTR | 66640260 | 66640522 | 66640260 | ID=Msa1070460-mRNA-1:three_prime_utr;Parent=Msa1070460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
