AlfalfaGEDB | Msa1070460

M. sativa cultivar zhongmu-4 / Msa1070460

KEGG: K21891
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008324 GO:0009607 GO:0009987 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032469 GO:0033554 GO:0034220 GO:0034976 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071216 GO:0072503 GO:0072507 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827
PFAM: PF01956.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070460	KAF1886066.1	81.148	244	32	3	47	282	24	261	1.96e-132	385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070460	sp\|Q5I0H4\|TMCO1_RAT	46.927	179	92	2	103	279	5	182	1.10e-45	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070460	A0A6A5NF82	81.148	244	32	3	47	282	24	261	9.38e-133	385

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024400	Msa1070460	0.814743	1.319023e-51	-8.615850e-47
Msa0063940	Msa1070460	0.806228	9.110444e-50	-8.615850e-47
Msa0071410	Msa1070460	0.805333	1.404063e-49	-8.615850e-47
Msa0093850	Msa1070460	0.806015	1.010046e-49	-8.615850e-47
Msa0138360	Msa1070460	0.817449	3.278365e-52	-8.615850e-47
Msa0163510	Msa1070460	0.805151	1.533310e-49	-8.615850e-47
Msa0195640	Msa1070460	0.837056	6.507909e-57	-8.615850e-47
Msa0202490	Msa1070460	0.803002	4.291011e-49	-8.615850e-47
Msa0341690	Msa1070460	0.808656	2.782679e-50	-8.615850e-47
Msa0527190	Msa1070460	0.826077	3.307059e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070460	MtrunA17_Chr7g0252821	99.471	189	1	0	94	282	1	189	1.91e-136	383

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1070460	AT5G06660.1	83.069	189	28	2	98	282	8	196	1.42e-100	292
Msa1070460	AT3G12030.1	83.069	189	28	2	98	282	8	196	2.92e-93	274

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Find 74 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTGAATGGCAATT+TGG	0.263436	7_2:+66640709	None:intergenic
AAAATCATGCTGGTCTCCCT+AGG	0.547624	7_2:+66640403	None:intergenic
AAAGCGAAGAAACTCTCCTA+TGG	0.571285	7_2:+66640284	None:intergenic
AAATGCCATGGAACAATCAG+TGG	0.579830	7_2:+66640640	None:intergenic
AAATTGCCATTCAAGCCTTT+TGG	0.268584	7_2:-66640707	Msa1070460:CDS
AACAAATTTGCAGAAGTTCT+TGG	0.285687	7_2:-66640588	Msa1070460:CDS
AACCAGAGCAACCACACCAC+CGG	0.570086	7_2:+66640784	None:intergenic
AACTAGATCAACTGGTCTTT+GGG	0.342623	7_2:+66640516	None:intergenic
AAGAGATACCCACAACAGTG+AGG	0.718334	7_2:+66641032	None:intergenic
AATGCCATGGAACAATCAGT+GGG	0.668389	7_2:+66640641	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTCTTCTAATATCTGATT+AGG	+	chr7_2:66640344-66640363	None:intergenic	30.0%
AAACATAGTAGATCTGAGAA+GGG	+	chr7_2:66640475-66640494	None:intergenic	30.0%
AGGTATTTGTGCATTACTTT+AGG	-	chr7_2:66640562-66640581	Msa1070460:CDS	30.0%
GAACTTAAAGTTAGAGTTCA+TGG	+	chr7_2:66640707-66640726	None:intergenic	30.0%
AATCTAACACCCGAAAAAAT+GGG	+	chr7_2:66640761-66640780	None:intergenic	30.0%
AAATCTAACACCCGAAAAAA+TGG	+	chr7_2:66640762-66640781	None:intergenic	30.0%
GGTTTGAATTTCACGATTAT+TGG	-	chr7_2:66640888-66640907	Msa1070460:CDS	30.0%
GCGTTAATGTATGCTTTAAT+TGG	-	chr7_2:66640971-66640990	Msa1070460:CDS	30.0%
ATGTATAGACATTAACACAC+GGG	+	chr7_2:66641070-66641089	None:intergenic	30.0%
GATCCAAATATGGTTAATGA+TGG	-	chr7_2:66641407-66641426	Msa1070460:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	66640260	66642788	66640260	ID=Msa1070460;Name=Msa1070460
chr7_2	mRNA	66640260	66642788	66640260	ID=Msa1070460-mRNA-1;Parent=Msa1070460;Name=Msa1070460-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|1\|0.5\|1\|1\|1\|2\|263\|282
chr7_2	exon	66640260	66641166	66640260	ID=Msa1070460-mRNA-1:exon:14292;Parent=Msa1070460-mRNA-1
chr7_2	exon	66642584	66642788	66642584	ID=Msa1070460-mRNA-1:exon:14291;Parent=Msa1070460-mRNA-1
chr7_2	CDS	66642584	66642788	66642584	ID=Msa1070460-mRNA-1:cds;Parent=Msa1070460-mRNA-1
chr7_2	CDS	66640523	66641166	66640523	ID=Msa1070460-mRNA-1:cds;Parent=Msa1070460-mRNA-1
chr7_2	three_prime_UTR	66640260	66640522	66640260	ID=Msa1070460-mRNA-1:three_prime_utr;Parent=Msa1070460-mRNA-1

Gene Sequence

>Msa1070460

TTGATTCCTCCTTCAAAAAAAAAAAAAAGTGTACTTGATTCAGATTCACTCACTCTCTGGTTAGTGCAATCAATTCAGAACCCTAATCAGATATTAGAAGAACCAAAACCCATCACCGTCTTCGTCAACTCTTTCTCTCATCGCGAATCGCTGAGCTGTGAACGCACGCGCCTTGGCTTCGTTCACGTTCTTGCGATTCCTCAAGGTTTTGGAAATTCAAGCAATTCTGATCAAGATCCAAGTTTGCTGTCTTTGTTTCTAGATTTTTCTTTACCATCCATGGCATATCCCTTCTCAGATTTCAAGTACTCGGATGGCCTCACTGTTGTGGGTATCTCTTTCTGTACAGCTATTGTCTGTGAGGCCATCTCATGGGTTCTTATTTACCGCACCAATTCTTACAAGAACCTTCGCTCCTCTATCGACAAAGCTTCCAAGAAACTCGAGACTATGAAGACAGACAACAACAAAATCAACATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACTAGCCTCAAAGAATCTAGTCGTGACTTGTCTCTCTTCAAGTTTAAATCCGGTGGTGTGGTTGCTCTGGTTCTCTTTGTGGTATTTGGGCTGCTCAATTCGCTATTTGAAGGCAAGGTAGTTGCCAAATTGCCATTCAAGCCTTTTGGGCTTGTTATGAAGATGAGCCATCGAGGGTTGCAAGGTAATGATCCCACTGATTGTTCCATGGCATTTCTATACTTCCTGTGTTCCATTAGTATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCGCCAAGGGGTGCAGGTGCTGGTCTCTTTCCAATGCCAGACCCAAAGACCAGTTGA

Protein sequence

>Msa1070460

LIPPSKKKKSVLDSDSLTLWLVQSIQNPNQILEEPKPITVFVNSFSHRESLSCERTRLGFVHVLAIPQGFGNSSNSDQDPSLLSLFLDFSLPSMAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDNNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGLFPMPDPKTS*