Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422590 | sp|Q8LAN3|P4H4_ARATH | 78.148 | 270 | 57 | 1 | 34 | 303 | 31 | 298 | 1.76e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422590 | G7IFM9 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa1422590 | 0.820408 | 6.969559e-53 | -8.615850e-47 |
| Msa0093850 | Msa1422590 | 0.802489 | 5.474802e-49 | -8.615850e-47 |
| Msa1414820 | Msa1422590 | 0.807160 | 5.790421e-50 | -8.615850e-47 |
| Msa0674480 | Msa1422590 | 0.803206 | 3.893653e-49 | -8.615850e-47 |
| Msa0690540 | Msa1422590 | 0.802337 | 5.885253e-49 | -8.615850e-47 |
| Msa0195640 | Msa1422590 | 0.997397 | 8.321250e-242 | -8.615850e-47 |
| Msa0379650 | Msa1422590 | 0.818720 | 1.691662e-52 | -8.615850e-47 |
| Msa0417970 | Msa1422590 | 0.800066 | 1.715445e-48 | -8.615850e-47 |
| Msa1031350 | Msa1422590 | 0.821516 | 3.874161e-53 | -8.615850e-47 |
| Msa1070460 | Msa1422590 | 0.840880 | 6.659722e-58 | -8.615850e-47 |
| Msa1083700 | Msa1422590 | 0.819131 | 1.364562e-52 | -8.615850e-47 |
| Msa0341690 | Msa1422590 | 0.802532 | 5.364649e-49 | -8.615850e-47 |
| Msa0527190 | Msa1422590 | 0.809476 | 1.857281e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422590 | MtrunA17_Chr2g0286811 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Msa1422590 | MtrunA17_Chr4g0066531 | 83.094 | 278 | 44 | 2 | 27 | 303 | 23 | 298 | 1.57e-175 | 487 |
| Msa1422590 | MtrunA17_Chr6g0452281 | 61.702 | 282 | 97 | 4 | 26 | 303 | 37 | 311 | 4.66e-121 | 349 |
| Msa1422590 | MtrunA17_Chr5g0406051 | 56.019 | 216 | 87 | 2 | 40 | 253 | 78 | 287 | 1.34e-83 | 253 |
| Msa1422590 | MtrunA17_Chr8g0371221 | 55.140 | 214 | 92 | 1 | 40 | 253 | 67 | 276 | 9.35e-81 | 246 |
| Msa1422590 | MtrunA17_Chr3g0143381 | 54.976 | 211 | 91 | 1 | 43 | 253 | 72 | 278 | 1.37e-80 | 245 |
| Msa1422590 | MtrunA17_Chr8g0371281 | 51.402 | 214 | 100 | 1 | 40 | 253 | 66 | 275 | 8.40e-75 | 230 |
| Msa1422590 | MtrunA17_Chr8g0371251 | 50.935 | 214 | 101 | 1 | 40 | 253 | 68 | 277 | 1.14e-72 | 225 |
| Msa1422590 | MtrunA17_Chr8g0371231 | 50.249 | 201 | 96 | 1 | 50 | 250 | 2 | 198 | 1.87e-67 | 209 |
| Msa1422590 | MtrunA17_Chr6g0470551 | 41.758 | 273 | 131 | 6 | 35 | 303 | 49 | 297 | 1.80e-62 | 199 |
| Msa1422590 | MtrunA17_Chr1g0213811 | 45.833 | 216 | 99 | 3 | 38 | 248 | 73 | 275 | 9.25e-57 | 184 |
| Msa1422590 | MtrunA17_Chr3g0143361 | 50.838 | 179 | 78 | 2 | 72 | 250 | 1 | 169 | 4.36e-56 | 180 |
| Msa1422590 | MtrunA17_Chr4g0053801 | 41.667 | 228 | 118 | 6 | 26 | 249 | 73 | 289 | 2.24e-50 | 168 |
| Msa1422590 | MtrunA17_Chr8g0371241 | 45.714 | 175 | 75 | 2 | 76 | 250 | 4 | 158 | 1.03e-47 | 157 |
| Msa1422590 | MtrunA17_Chr3g0143371 | 47.205 | 161 | 76 | 1 | 72 | 232 | 1 | 152 | 3.44e-43 | 145 |
| Msa1422590 | MtrunA17_Chr5g0401481 | 37.398 | 246 | 119 | 8 | 28 | 249 | 69 | 303 | 3.33e-42 | 147 |
| Msa1422590 | MtrunA17_Chr3g0143351 | 43.478 | 184 | 89 | 3 | 72 | 253 | 1 | 171 | 3.14e-41 | 141 |
| Msa1422590 | MtrunA17_Chr3g0098671 | 55.932 | 59 | 25 | 1 | 122 | 180 | 31 | 88 | 2.08e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422590 | AT5G18900.1 | 78.148 | 270 | 57 | 1 | 34 | 303 | 31 | 298 | 1.79e-162 | 454 |
| Msa1422590 | AT3G06300.1 | 75.849 | 265 | 62 | 1 | 39 | 303 | 37 | 299 | 2.53e-152 | 428 |
| Msa1422590 | AT3G28480.1 | 60.000 | 275 | 105 | 2 | 29 | 303 | 45 | 314 | 3.63e-125 | 360 |
| Msa1422590 | AT3G28490.1 | 61.852 | 270 | 94 | 4 | 35 | 303 | 27 | 288 | 6.57e-120 | 346 |
| Msa1422590 | AT3G28480.2 | 56.184 | 283 | 111 | 4 | 29 | 303 | 45 | 322 | 5.69e-113 | 330 |
| Msa1422590 | AT1G20270.1 | 47.059 | 272 | 121 | 2 | 1 | 253 | 18 | 285 | 2.86e-82 | 250 |
| Msa1422590 | AT4G35810.1 | 55.189 | 212 | 91 | 2 | 43 | 254 | 83 | 290 | 9.21e-79 | 241 |
| Msa1422590 | AT4G35810.2 | 55.189 | 212 | 91 | 2 | 43 | 254 | 83 | 290 | 9.21e-79 | 241 |
| Msa1422590 | AT2G17720.1 | 54.206 | 214 | 94 | 1 | 40 | 253 | 80 | 289 | 3.77e-77 | 237 |
| Msa1422590 | AT5G66060.1 | 53.271 | 214 | 96 | 1 | 40 | 253 | 78 | 287 | 2.46e-75 | 233 |
| Msa1422590 | AT4G25600.1 | 39.568 | 278 | 137 | 5 | 26 | 303 | 45 | 291 | 5.37e-65 | 206 |
| Msa1422590 | AT2G43080.1 | 47.489 | 219 | 99 | 3 | 35 | 249 | 72 | 278 | 7.28e-59 | 190 |
| Msa1422590 | AT4G25600.3 | 38.314 | 261 | 130 | 5 | 43 | 303 | 1 | 230 | 9.91e-57 | 183 |
| Msa1422590 | AT4G25600.4 | 38.672 | 256 | 126 | 5 | 48 | 303 | 3 | 227 | 2.58e-56 | 182 |
| Msa1422590 | AT4G25600.2 | 38.672 | 256 | 126 | 5 | 48 | 303 | 15 | 239 | 2.83e-56 | 182 |
| Msa1422590 | AT4G35820.1 | 46.465 | 198 | 72 | 3 | 43 | 232 | 91 | 262 | 7.74e-50 | 166 |
| Msa1422590 | AT5G66060.2 | 51.829 | 164 | 73 | 2 | 40 | 203 | 78 | 235 | 1.02e-49 | 165 |
| Msa1422590 | AT4G33910.1 | 41.706 | 211 | 110 | 6 | 43 | 249 | 81 | 282 | 3.02e-47 | 160 |
| Msa1422590 | AT1G20270.2 | 42.391 | 184 | 87 | 1 | 1 | 165 | 18 | 201 | 3.63e-45 | 152 |
| Msa1422590 | AT1G20270.3 | 42.391 | 184 | 87 | 1 | 1 | 165 | 18 | 201 | 3.63e-45 | 152 |
| Msa1422590 | AT2G23096.1 | 37.264 | 212 | 125 | 2 | 43 | 254 | 71 | 274 | 2.45e-43 | 150 |
| Msa1422590 | AT2G43080.2 | 42.857 | 98 | 54 | 1 | 35 | 130 | 72 | 169 | 3.39e-16 | 75.9 |
Find 96 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAGGATGCCATTGTTTC+TGG | 0.152632 | tig0025423:-48181 | Msa1422590:intron |
| CAGACTCCAAGTGATGATTT+TGG | 0.182040 | tig0025423:-45468 | Msa1422590:three_prime_UTR |
| TCATTGGTTACTATGTAAAA+TGG | 0.240634 | tig0025423:-45245 | Msa1422590:three_prime_UTR |
| AAACGAGGACCAACGGAAAA+TGG | 0.247660 | tig0025423:+45437 | None:intergenic |
| CATTTCTCTCCTTCGATAAC+AGG | 0.280827 | tig0025423:+45698 | None:intergenic |
| CACTAAGAATCCTGAATATA+TGG | 0.282225 | tig0025423:-45564 | Msa1422590:CDS |
| GAATATATGGTTGGAACTTC+AGG | 0.307119 | tig0025423:-45551 | Msa1422590:CDS |
| CTTAGACAAACCTCTGCATT+AGG | 0.325102 | tig0025423:+46556 | None:intergenic |
| TGCAAATTCCACTTCGCATT+AGG | 0.330323 | tig0025423:-49436 | Msa1422590:CDS |
| AAGAAATGAGTGTGATTTGT+AGG | 0.347408 | tig0025423:-49495 | Msa1422590:exon |
| AGTGAAGTTAGAACCAGTTC+TGG | 0.354554 | tig0025423:-49114 | Msa1422590:CDS |
| GAAACTTGTTTGACCTTAGT+AGG | 0.360238 | tig0025423:+49382 | None:intergenic |
| GAAGTTCCAACCATATATTC+AGG | 0.361576 | tig0025423:+45554 | None:intergenic |
| CAAAATCATCACTTGGAGTC+TGG | 0.363159 | tig0025423:+45469 | None:intergenic |
| GTTGGAACTTCAGGCCTTCC+CGG | 0.373927 | tig0025423:-45542 | Msa1422590:CDS |
| GAACACTGTTTCACCACCTT+TGG | 0.383993 | tig0025423:+46579 | None:intergenic |
| GCATGAAGACTGAGAGTGTC+TGG | 0.388702 | tig0025423:+45728 | None:intergenic |
| CTAAGGTCAAACAAGTTTCA+TGG | 0.401454 | tig0025423:-49378 | Msa1422590:CDS |
| TGAGTGTGATTTGTAGGGTT+TGG | 0.422719 | tig0025423:-49489 | Msa1422590:CDS |
| AGAGTGTCTGGGATAGCATT+TGG | 0.424892 | tig0025423:+45740 | None:intergenic |
| AGAAATGGTCAGCAACGAAA+TGG | 0.434699 | tig0025423:-45682 | Msa1422590:CDS |
| TGCCATTGTTTCTGGTATTG+AGG | 0.440359 | tig0025423:-48173 | Msa1422590:CDS |
| AGAGATGAACATTCCAGAAC+TGG | 0.440968 | tig0025423:+49101 | None:intergenic |
| GAGTGTCTGGGATAGCATTT+GGG | 0.440994 | tig0025423:+45741 | None:intergenic |
| TAAATTTATAAAACTCGAAT+CGG | 0.442324 | tig0025423:+45181 | None:intergenic |
| TCATGGACCTTTCTTCCAAA+AGG | 0.445573 | tig0025423:-48139 | Msa1422590:intron |
| AGCATGAAAGCTGTGAAAGA+TGG | 0.459553 | tig0025423:-45604 | Msa1422590:CDS |
| AGTTGGGAAGCTGTAATTGT+AGG | 0.459774 | tig0025423:-45292 | Msa1422590:three_prime_UTR |
| CTGATAAAGTTAATATAGCT+CGG | 0.467874 | tig0025423:-46648 | Msa1422590:CDS |
| TTCACTCAATTTACTCTCAC+CGG | 0.475756 | tig0025423:+49131 | None:intergenic |
| ATCTAGTTAGAAATTAAGAA+AGG | 0.477176 | tig0025423:-49521 | Msa1422590:five_prime_UTR |
| TTAGACAAACCTCTGCATTA+GGG | 0.480644 | tig0025423:+46557 | None:intergenic |
| TTCTAACTAGATTCAAACTT+CGG | 0.483038 | tig0025423:+49532 | None:intergenic |
| CTGATAGTGTTCTAGTCTCA+TGG | 0.484285 | tig0025423:-45340 | Msa1422590:three_prime_UTR |
| GCAGTCGGTTGTTGATTTCG+TGG | 0.489379 | tig0025423:-45153 | None:intergenic |
| TGATAAAGTTAATATAGCTC+GGG | 0.491118 | tig0025423:-46647 | Msa1422590:CDS |
| AGAAATGAGTGTGATTTGTA+GGG | 0.494069 | tig0025423:-49494 | Msa1422590:exon |
| TATAAATTTATTAAAGCAGT+CGG | 0.494080 | tig0025423:-45168 | Msa1422590:three_prime_UTR |
| ACATCATAAATTGTCTGAAA+CGG | 0.501156 | tig0025423:-45961 | Msa1422590:CDS |
| TTTGATAAGACAGTGGGAGC+TGG | 0.502422 | tig0025423:-45644 | Msa1422590:CDS |
| GAAATGGTCAGCAACGAAAT+GGG | 0.504240 | tig0025423:-45681 | Msa1422590:CDS |
| TTCACCACCTTTGGTCACAT+TGG | 0.505157 | tig0025423:+46588 | None:intergenic |
| AGAAGTGCATCTCCCCTTCG+AGG | 0.514605 | tig0025423:+45779 | None:intergenic |
| CTGTTATCGAAGGAGAGAAA+TGG | 0.515658 | tig0025423:-45697 | Msa1422590:CDS |
| TTGAGGACAAAATTTCATCA+TGG | 0.521859 | tig0025423:-48156 | Msa1422590:CDS |
| TGCGATCATCGATCCTACTA+AGG | 0.523081 | tig0025423:-49395 | Msa1422590:CDS |
| TGTGAAAGATGGGCTGCCCT+TGG | 0.532464 | tig0025423:-45593 | Msa1422590:CDS |
| ATATAGCTCGGGGTGGACAC+CGG | 0.534530 | tig0025423:-46636 | Msa1422590:CDS |
| TATAGCTCGGGGTGGACACC+GGG | 0.537697 | tig0025423:-46635 | Msa1422590:CDS |
| AAGAATCCTGAATATATGGT+TGG | 0.543672 | tig0025423:-45560 | Msa1422590:CDS |
| AAATACAAAACGAGGACCAA+CGG | 0.543863 | tig0025423:+45430 | None:intergenic |
| GTTTCAGACAATTTATGATG+TGG | 0.544754 | tig0025423:+45963 | None:intergenic |
| AAACTCGAATCGGAGAACTA+AGG | 0.546263 | tig0025423:+45191 | None:intergenic |
| GCTTAAGAGATCTGCGGTGG+CGG | 0.551432 | tig0025423:-49163 | Msa1422590:CDS |
| TAAGACAGTGGGAGCTGGAG+GGG | 0.554702 | tig0025423:-45639 | Msa1422590:CDS |
| GATTCTTAGTGCATTCTCCA+AGG | 0.556485 | tig0025423:+45576 | None:intergenic |
| AAGTCATGTTAGAAGTGTAA+TGG | 0.568423 | tig0025423:-45500 | Msa1422590:exon |
| CAGGCCTTCCCGGCTACTGT+AGG | 0.569192 | tig0025423:-45532 | Msa1422590:CDS |
| GACACTCTCAGTCTTCATGC+AGG | 0.570274 | tig0025423:-45725 | Msa1422590:CDS |
| GCGGTGGCGGATAATTTGTC+CGG | 0.571666 | tig0025423:-49150 | Msa1422590:CDS |
| GCATGAAAGCTGTGAAAGAT+GGG | 0.572614 | tig0025423:-45603 | Msa1422590:CDS |
| GATAAGACAGTGGGAGCTGG+AGG | 0.578221 | tig0025423:-45641 | Msa1422590:CDS |
| AGTCATCCAAAATCATCACT+TGG | 0.580213 | tig0025423:+45462 | None:intergenic |
| GACTCATTTGATAAGACAGT+GGG | 0.582863 | tig0025423:-45650 | Msa1422590:CDS |
| GATCGCACTGGTGCCTGCGT+AGG | 0.583047 | tig0025423:+49411 | None:intergenic |
| GTCCTCAATACCAGAAACAA+TGG | 0.584336 | tig0025423:+48171 | None:intergenic |
| ACATGAGAACAGTGGCGACC+CGG | 0.584634 | tig0025423:+46617 | None:intergenic |
| ATTTCTCTCCTTCGATAACA+GGG | 0.593078 | tig0025423:+45699 | None:intergenic |
| ATTCTTAGTGCATTCTCCAA+GGG | 0.593731 | tig0025423:+45577 | None:intergenic |
| CTCACCAATGTGACCAAAGG+TGG | 0.594456 | tig0025423:-46592 | Msa1422590:CDS |
| ATAAGACAGTGGGAGCTGGA+GGG | 0.609232 | tig0025423:-45640 | Msa1422590:CDS |
| AATTCGCAGTGAAACCTCGA+AGG | 0.610953 | tig0025423:-45793 | Msa1422590:intron |
| AACAAGTTTCATGGAAACCA+AGG | 0.611153 | tig0025423:-49369 | Msa1422590:intron |
| GATGAAGATCTCTCTGAGTG+TGG | 0.611563 | tig0025423:-45939 | Msa1422590:CDS |
| AGTAGGATCGATGATCGCAC+TGG | 0.616555 | tig0025423:+49399 | None:intergenic |
| AACAGTGTTCCCTAATGCAG+AGG | 0.619999 | tig0025423:-46566 | Msa1422590:intron |
| TCAGCAAAGTAATCATAATG+TGG | 0.621068 | tig0025423:+46667 | None:intergenic |
| GCAGGATGCCCTGTTATCGA+AGG | 0.625361 | tig0025423:-45707 | Msa1422590:CDS |
| CATGAAGACTGAGAGTGTCT+GGG | 0.629666 | tig0025423:+45729 | None:intergenic |
| CGTAGGAACCTAATGCGAAG+TGG | 0.633908 | tig0025423:+49428 | None:intergenic |
| ATTCGCAGTGAAACCTCGAA+GGG | 0.636214 | tig0025423:-45792 | Msa1422590:intron |
| TTCGCATTAGGTTCCTACGC+AGG | 0.649736 | tig0025423:-49424 | Msa1422590:CDS |
| GATAAAGTTAATATAGCTCG+GGG | 0.655465 | tig0025423:-46646 | Msa1422590:CDS |
| AGCAACGAAATGGGTTCACG+TGG | 0.656742 | tig0025423:-45672 | Msa1422590:CDS |
| TATCTCACCAATGTGACCAA+AGG | 0.657014 | tig0025423:-46595 | Msa1422590:CDS |
| TGTCTGGGATAGCATTTGGG+TGG | 0.659573 | tig0025423:+45744 | None:intergenic |
| AATGTTCATCTCTAAGAACA+AGG | 0.670043 | tig0025423:-49091 | Msa1422590:intron |
| AAAGTTAATATAGCTCGGGG+TGG | 0.676845 | tig0025423:-46643 | Msa1422590:CDS |
| AGAGCTTAAGAGATCTGCGG+TGG | 0.677552 | tig0025423:-49166 | Msa1422590:CDS |
| GGACTCATTTGATAAGACAG+TGG | 0.688517 | tig0025423:-45651 | Msa1422590:CDS |
| AAATACATTACAATCCACAA+CGG | 0.691499 | tig0025423:+45389 | None:intergenic |
| ATCAGAGCTTAAGAGATCTG+CGG | 0.704098 | tig0025423:-49169 | Msa1422590:CDS |
| AATTTGCAGATCAATAACAA+TGG | 0.708544 | tig0025423:+49451 | None:intergenic |
| CAAGTATTAAGATATGAGCA+CGG | 0.708863 | tig0025423:-46703 | Msa1422590:CDS |
| TTCGCAGTGAAACCTCGAAG+GGG | 0.712408 | tig0025423:-45791 | Msa1422590:intron |
| GGTGAGATACATGAGAACAG+TGG | 0.745524 | tig0025423:+46609 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTATTTTATTTTGA+AGG | - | tig0025423:46301-46320 | Msa1422590:intron | 10.0% |
| !! | AAATAAAATTAGTAATAACA+GGG | + | tig0025423:46790-46809 | None:intergenic | 10.0% |
| !! | AAAATAAAATTAGTAATAAC+AGG | + | tig0025423:46791-46810 | None:intergenic | 10.0% |
| !! | AAAAAAAATTGAAAAGTTTA+TGG | - | tig0025423:48576-48595 | Msa1422590:intron | 10.0% |
| !! | TTATGATATACGAAAATTAA+AGG | - | tig0025423:47106-47125 | Msa1422590:intron | 15.0% |
| !! | TATGATATACGAAAATTAAA+GGG | - | tig0025423:47107-47126 | Msa1422590:intron | 15.0% |
| !!! | TAAATTGTTATTTCAGTTTT+GGG | + | tig0025423:47761-47780 | None:intergenic | 15.0% |
| !!! | AATTTGTGAATATTTTGTTA+TGG | + | tig0025423:47936-47955 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGTTTTATGTATT+GGG | + | tig0025423:48002-48021 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTGTTTTATGTAT+TGG | + | tig0025423:48003-48022 | None:intergenic | 15.0% |
| !! | TAAATTTATAAAACTCGAAT+CGG | + | tig0025423:49622-49641 | None:intergenic | 15.0% |
| !! | TATAAATTTATTAAAGCAGT+CGG | - | tig0025423:49632-49651 | Msa1422590:five_prime_UTR | 15.0% |
| !! | ATCTAGTTAGAAATTAAGAA+AGG | - | tig0025423:45279-45298 | Msa1422590:three_prime_UTR | 20.0% |
| !! | TCTATAATTGCAAATTCTTT+AGG | - | tig0025423:45766-45785 | Msa1422590:CDS | 20.0% |
| !! | GGAATTATCTATTATCTATT+TGG | - | tig0025423:45881-45900 | Msa1422590:intron | 20.0% |
| !!! | ATTTTTTGTTCTATATTGTC+TGG | - | tig0025423:46806-46825 | Msa1422590:intron | 20.0% |
| !!! | TAAATACAAACCATTTGTTT+TGG | - | tig0025423:46831-46850 | Msa1422590:intron | 20.0% |
| !! | ACATAAACAATTAAAATGAG+TGG | - | tig0025423:46860-46879 | Msa1422590:intron | 20.0% |
| !! | GTCATGTGATTATTTAAATA+AGG | - | tig0025423:47350-47369 | Msa1422590:intron | 20.0% |
| !!! | TACTTAATATCAGTTTTTGA+AGG | - | tig0025423:47423-47442 | Msa1422590:intron | 20.0% |
| !!! | ATTGAATTTAGTTTTCAAAC+AGG | - | tig0025423:47498-47517 | Msa1422590:intron | 20.0% |
| !!! | CTAAATTGTTATTTCAGTTT+TGG | + | tig0025423:47762-47781 | None:intergenic | 20.0% |
| !! | AAATGCAATACTTCTTAATT+TGG | + | tig0025423:47826-47845 | None:intergenic | 20.0% |
| !! | CAGAAAAAAAAATATGAACT+TGG | - | tig0025423:48013-48032 | Msa1422590:intron | 20.0% |
| !! | AAAAAAAAATATGAACTTGG+AGG | - | tig0025423:48016-48035 | Msa1422590:intron | 20.0% |
| !!! | TTCTTCTGTATTATTTTGTA+AGG | - | tig0025423:48935-48954 | Msa1422590:intron | 20.0% |
| !! | AGAAAAAAAAATACAAAACG+AGG | + | tig0025423:49381-49400 | None:intergenic | 20.0% |
| !!! | GATTCGAATTTTTTTTTCAT+TGG | - | tig0025423:49539-49558 | Msa1422590:five_prime_UTR | 20.0% |
| ! | TTCTAACTAGATTCAAACTT+CGG | + | tig0025423:45271-45290 | None:intergenic | 25.0% |
| ! | AATTTGCAGATCAATAACAA+TGG | + | tig0025423:45352-45371 | None:intergenic | 25.0% |
| !! | CACATTTTCACAACAAAATT+TGG | + | tig0025423:45495-45514 | None:intergenic | 25.0% |
| !!! | ATAGTTATTGCCTTTTGATT+TGG | - | tig0025423:45540-45559 | Msa1422590:CDS | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | tig0025423:45989-46008 | None:intergenic | 25.0% |
| ! | ACAACAACAAAGCATATAAA+AGG | + | tig0025423:46253-46272 | None:intergenic | 25.0% |
| ! | GATTCTATACATGAATAACA+TGG | - | tig0025423:46415-46434 | Msa1422590:intron | 25.0% |
| ! | ATGAATAACATGGAATGTTT+GGG | - | tig0025423:46425-46444 | Msa1422590:intron | 25.0% |
| ! | TTCATAGAATTCAGAAAGTA+TGG | + | tig0025423:46573-46592 | None:intergenic | 25.0% |
| !!! | ACTCTGTGTTGTTATTTTAT+AGG | - | tig0025423:46603-46622 | Msa1422590:CDS | 25.0% |
| ! | AAAGTCATGAATAAAATCAG+TGG | - | tig0025423:46696-46715 | Msa1422590:CDS | 25.0% |
| ! | AAAATAATGTCTTCTAGCAA+AGG | - | tig0025423:46954-46973 | Msa1422590:intron | 25.0% |
| ! | AAATAATGTCTTCTAGCAAA+GGG | - | tig0025423:46955-46974 | Msa1422590:intron | 25.0% |
| ! | CAAACCTAAAATTAGAATCA+CGG | + | tig0025423:47081-47100 | None:intergenic | 25.0% |
| ! | TAAGAAACTTTAAATGGCTA+CGG | + | tig0025423:47164-47183 | None:intergenic | 25.0% |
| ! | CAGACTTAAGAAACTTTAAA+TGG | + | tig0025423:47170-47189 | None:intergenic | 25.0% |
| ! | TCAAACTCAAAATAGGTAAT+AGG | + | tig0025423:47212-47231 | None:intergenic | 25.0% |
| ! | TTCATAGTCAAACTCAAAAT+AGG | + | tig0025423:47219-47238 | None:intergenic | 25.0% |
| ! | AGAACATAATTTAATGGAGT+TGG | + | tig0025423:47456-47475 | None:intergenic | 25.0% |
| ! | ACTAAATTCAATGCTAAAAG+TGG | + | tig0025423:47490-47509 | None:intergenic | 25.0% |
| ! | CTGATAAAGTTAATATAGCT+CGG | - | tig0025423:48152-48171 | Msa1422590:CDS | 25.0% |
| ! | TGATAAAGTTAATATAGCTC+GGG | - | tig0025423:48153-48172 | Msa1422590:CDS | 25.0% |
| ! | ATTGAAAAGTTTATGGTTGA+TGG | - | tig0025423:48583-48602 | Msa1422590:intron | 25.0% |
| ! | TTGAAAAGTTTATGGTTGAT+GGG | - | tig0025423:48584-48603 | Msa1422590:intron | 25.0% |
| ! | ATAGTCAAAATATTTGAGCA+CGG | + | tig0025423:48623-48642 | None:intergenic | 25.0% |
| ! | TTGACTATACTTATGAACAA+TGG | - | tig0025423:48635-48654 | Msa1422590:intron | 25.0% |
| ! | TGAATTCTATACCAAATAGT+TGG | - | tig0025423:48723-48742 | Msa1422590:intron | 25.0% |
| ! | GAATTCTATACCAAATAGTT+GGG | - | tig0025423:48724-48743 | Msa1422590:intron | 25.0% |
| ! | ACATCATAAATTGTCTGAAA+CGG | - | tig0025423:48839-48858 | Msa1422590:intron | 25.0% |
| ! | AAATACATTACAATCCACAA+CGG | + | tig0025423:49414-49433 | None:intergenic | 25.0% |
| !! | TCATTGGTTACTATGTAAAA+TGG | - | tig0025423:49555-49574 | Msa1422590:five_prime_UTR | 25.0% |
| ! | AAGAAATGAGTGTGATTTGT+AGG | - | tig0025423:45305-45324 | Msa1422590:three_prime_UTR | 30.0% |
| ! | AGAAATGAGTGTGATTTGTA+GGG | - | tig0025423:45306-45325 | Msa1422590:three_prime_UTR | 30.0% |
| ! | TGTTTACAAAGGTTTTCTGA+CGG | - | tig0025423:45574-45593 | Msa1422590:CDS | 30.0% |
| ! | AATGTTCATCTCTAAGAACA+AGG | - | tig0025423:45709-45728 | Msa1422590:CDS | 30.0% |
| TTTGGCATAAGATTGATGTT+GGG | + | tig0025423:45821-45840 | None:intergenic | 30.0% | |
| ATTTGGCATAAGATTGATGT+TGG | + | tig0025423:45822-45841 | None:intergenic | 30.0% | |
| TCTTATGCCAAATTAGTGTT+TGG | - | tig0025423:45829-45848 | Msa1422590:intron | 30.0% | |
| !!! | AAAGAGCACTGTTTTAAACA+AGG | - | tig0025423:46393-46412 | Msa1422590:intron | 30.0% |
| CATGAATAACATGGAATGTT+TGG | - | tig0025423:46424-46443 | Msa1422590:intron | 30.0% | |
| ! | TTTGTGAGTTGTCTGAATTT+TGG | - | tig0025423:46466-46485 | Msa1422590:intron | 30.0% |
| !! | TCAGAAAGTATGGTTGTTTT+GGG | + | tig0025423:46563-46582 | None:intergenic | 30.0% |
| !! | TTCAGAAAGTATGGTTGTTT+TGG | + | tig0025423:46564-46583 | None:intergenic | 30.0% |
| TTGAGGACAAAATTTCATCA+TGG | - | tig0025423:46644-46663 | Msa1422590:CDS | 30.0% | |
| ! | TTTGTATATGCCATACCTTT+TGG | + | tig0025423:46679-46698 | None:intergenic | 30.0% |
| TAGGACAAAGATATAAGTTC+AGG | + | tig0025423:46738-46757 | None:intergenic | 30.0% | |
| ATCACTGTATCTATTTCACT+AGG | + | tig0025423:46757-46776 | None:intergenic | 30.0% | |
| ATGTATCAAGCCAAAACAAA+TGG | + | tig0025423:46844-46863 | None:intergenic | 30.0% | |
| AATGCAGAGAATAATAAGCT+CGG | + | tig0025423:46889-46908 | None:intergenic | 30.0% | |
| ! | GAATCCGTGATTCTAATTTT+AGG | - | tig0025423:47074-47093 | Msa1422590:intron | 30.0% |
| ACAGATGGAATAGATAGATT+GGG | + | tig0025423:47134-47153 | None:intergenic | 30.0% | |
| TACAGATGGAATAGATAGAT+TGG | + | tig0025423:47135-47154 | None:intergenic | 30.0% | |
| TTGAGTTTGACTATGAAGTT+TGG | - | tig0025423:47222-47241 | Msa1422590:intron | 30.0% | |
| TACAAGTTCAAAGTTCATAG+GGG | + | tig0025423:47293-47312 | None:intergenic | 30.0% | |
| GTACAAGTTCAAAGTTCATA+GGG | + | tig0025423:47294-47313 | None:intergenic | 30.0% | |
| AGTACAAGTTCAAAGTTCAT+AGG | + | tig0025423:47295-47314 | None:intergenic | 30.0% | |
| GAGCACAGAACATAATTTAA+TGG | + | tig0025423:47462-47481 | None:intergenic | 30.0% | |
| CAGATTGGACAAGTAATATA+GGG | + | tig0025423:47524-47543 | None:intergenic | 30.0% | |
| ACAGATTGGACAAGTAATAT+AGG | + | tig0025423:47525-47544 | None:intergenic | 30.0% | |
| CAATCTGTATATCTCAATGT+CGG | - | tig0025423:47537-47556 | Msa1422590:intron | 30.0% | |
| TCGGAAGAACTTAGTTTATA+TGG | - | tig0025423:47556-47575 | Msa1422590:intron | 30.0% | |
| !! | TAGAAGCATTCAAAGTTTAC+TGG | - | tig0025423:47779-47798 | Msa1422590:intron | 30.0% |
| CAAAGTTTACTGGAGAAAAT+CGG | - | tig0025423:47789-47808 | Msa1422590:intron | 30.0% | |
| GACTACTGAATTTCAGAAAA+TGG | - | tig0025423:48064-48083 | Msa1422590:intron | 30.0% | |
| CAAGTATTAAGATATGAGCA+CGG | - | tig0025423:48097-48116 | Msa1422590:intron | 30.0% | |
| TCAGCAAAGTAATCATAATG+TGG | + | tig0025423:48136-48155 | None:intergenic | 30.0% | |
| GATAAAGTTAATATAGCTCG+GGG | - | tig0025423:48154-48173 | Msa1422590:CDS | 30.0% | |
| ACAGAAAATTGCAGTGAATA+AGG | + | tig0025423:48398-48417 | None:intergenic | 30.0% | |
| TAGTCAAAATATTTGAGCAC+GGG | + | tig0025423:48622-48641 | None:intergenic | 30.0% | |
| !!! | AACACTACTCATCTTTTTTG+AGG | - | tig0025423:48666-48685 | Msa1422590:intron | 30.0% |
| !!! | ACACTACTCATCTTTTTTGA+GGG | - | tig0025423:48667-48686 | Msa1422590:intron | 30.0% |
| ATCAAAGTTAGCTACAAGAA+GGG | + | tig0025423:48789-48808 | None:intergenic | 30.0% | |
| TATCAAAGTTAGCTACAAGA+AGG | + | tig0025423:48790-48809 | None:intergenic | 30.0% | |
| ! | ATCTTTTTAACGCTAGTTAC+AGG | - | tig0025423:48809-48828 | Msa1422590:intron | 30.0% |
| GTTTCAGACAATTTATGATG+TGG | + | tig0025423:48840-48859 | None:intergenic | 30.0% | |
| CACTAAGAATCCTGAATATA+TGG | - | tig0025423:49236-49255 | Msa1422590:intron | 30.0% | |
| AAGAATCCTGAATATATGGT+TGG | - | tig0025423:49240-49259 | Msa1422590:intron | 30.0% | |
| ! | AAGTCATGTTAGAAGTGTAA+TGG | - | tig0025423:49300-49319 | Msa1422590:intron | 30.0% |
| !!! | TAAGAGGTACATTTTTGAGT+TGG | - | tig0025423:49491-49510 | Msa1422590:CDS | 30.0% |
| !!! | AAGAGGTACATTTTTGAGTT+GGG | - | tig0025423:49492-49511 | Msa1422590:CDS | 30.0% |
| ! | GAAACTTGTTTGACCTTAGT+AGG | + | tig0025423:45421-45440 | None:intergenic | 35.0% |
| CTAAGGTCAAACAAGTTTCA+TGG | - | tig0025423:45422-45441 | Msa1422590:three_prime_UTR | 35.0% | |
| AACAAGTTTCATGGAAACCA+AGG | - | tig0025423:45431-45450 | Msa1422590:three_prime_UTR | 35.0% | |
| AAATAGAGAGAAAGAGACCT+TGG | + | tig0025423:45451-45470 | None:intergenic | 35.0% | |
| TTCACTCAATTTACTCTCAC+CGG | + | tig0025423:45672-45691 | None:intergenic | 35.0% | |
| ! | TTCATCTCTAAGAACAAGGT+TGG | - | tig0025423:45713-45732 | Msa1422590:CDS | 35.0% |
| GTACACACCAAACACTAATT+TGG | + | tig0025423:45839-45858 | None:intergenic | 35.0% | |
| TTCAGTGTAATTACACGTGT+CGG | - | tig0025423:46020-46039 | Msa1422590:intron | 35.0% | |
| TCTCGTAAGTACAACTTAGA+TGG | - | tig0025423:46113-46132 | Msa1422590:intron | 35.0% | |
| TGCATAACCGTATGATATGT+TGG | - | tig0025423:46140-46159 | Msa1422590:intron | 35.0% | |
| GCATAACCGTATGATATGTT+GGG | - | tig0025423:46141-46160 | Msa1422590:intron | 35.0% | |
| ! | AAAACTCAGTGTTGAGAACT+GGG | + | tig0025423:46190-46209 | None:intergenic | 35.0% |
| ATTACATATGCTTCGTGTTC+TGG | - | tig0025423:46278-46297 | Msa1422590:intron | 35.0% | |
| TTACATATGCTTCGTGTTCT+GGG | - | tig0025423:46279-46298 | Msa1422590:intron | 35.0% | |
| AAAGGAAAAGACAAGAGCTT+GGG | + | tig0025423:46368-46387 | None:intergenic | 35.0% | |
| AAAAGGAAAAGACAAGAGCT+TGG | + | tig0025423:46369-46388 | None:intergenic | 35.0% | |
| AACAGTGCTCTTTGACAAAA+AGG | + | tig0025423:46386-46405 | None:intergenic | 35.0% | |
| GGAATGTTTGGGAGAATATT+TGG | - | tig0025423:46436-46455 | Msa1422590:intron | 35.0% | |
| ! | TGAGTTGTCTGAATTTTGGA+CGG | - | tig0025423:46470-46489 | Msa1422590:intron | 35.0% |
| ! | AATCTCCCGCAGTTTTTATA+CGG | + | tig0025423:46496-46515 | None:intergenic | 35.0% |
| ! | AAAAACTGCGGGAGATTTTT+CGG | - | tig0025423:46499-46518 | Msa1422590:intron | 35.0% |
| TTATAGGATGCCATTGTTTC+TGG | - | tig0025423:46619-46638 | Msa1422590:CDS | 35.0% | |
| CGTACTTACCAAAATAGCAA+GGG | + | tig0025423:46922-46941 | None:intergenic | 35.0% | |
| !!! | CCTTGCTATTTTGGTAAGTA+CGG | - | tig0025423:46920-46939 | Msa1422590:intron | 35.0% |
| CAGATGGAATAGATAGATTG+GGG | + | tig0025423:47133-47152 | None:intergenic | 35.0% | |
| TAAGTCTGATTCTGCATATC+AGG | - | tig0025423:47182-47201 | Msa1422590:intron | 35.0% | |
| !!! | AGTTCATAGGGGCATTTTAT+TGG | + | tig0025423:47282-47301 | None:intergenic | 35.0% |
| CGACATTGAGATATACAGAT+TGG | + | tig0025423:47539-47558 | None:intergenic | 35.0% | |
| TAGCCAATCAAATGCTTGAT+GGG | + | tig0025423:47632-47651 | None:intergenic | 35.0% | |
| ! | CTATAATATCCTGGTGGATA+AGG | + | tig0025423:47733-47752 | None:intergenic | 35.0% |
| TGGAGAAAATCGGAAATAGA+GGG | - | tig0025423:47799-47818 | Msa1422590:intron | 35.0% | |
| ! | TGTTTTATGTATTGGGCAAG+GGG | + | tig0025423:47995-48014 | None:intergenic | 35.0% |
| ! | CTGTTTTATGTATTGGGCAA+GGG | + | tig0025423:47996-48015 | None:intergenic | 35.0% |
| ! | TCTGTTTTATGTATTGGGCA+AGG | + | tig0025423:47997-48016 | None:intergenic | 35.0% |
| TTAGACAAACCTCTGCATTA+GGG | + | tig0025423:48246-48265 | None:intergenic | 35.0% | |
| AATCCTCAGACGAGATAATT+TGG | + | tig0025423:48465-48484 | None:intergenic | 35.0% | |
| ATCTCTCGTCTTTCTTTAGT+TGG | - | tig0025423:48508-48527 | Msa1422590:intron | 35.0% | |
| AGTCAAAATATTTGAGCACG+GGG | + | tig0025423:48621-48640 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGAGGGAGATGTTT+AGG | - | tig0025423:48678-48697 | Msa1422590:intron | 35.0% |
| CTGAACATCAAGTCACTTAA+TGG | - | tig0025423:48909-48928 | Msa1422590:intron | 35.0% | |
| ATTTCTCTCCTTCGATAACA+GGG | + | tig0025423:49104-49123 | None:intergenic | 35.0% | |
| GACTCATTTGATAAGACAGT+GGG | - | tig0025423:49150-49169 | Msa1422590:CDS | 35.0% | |
| ATTCTTAGTGCATTCTCCAA+GGG | + | tig0025423:49226-49245 | None:intergenic | 35.0% | |
| GAAGTTCCAACCATATATTC+AGG | + | tig0025423:49249-49268 | None:intergenic | 35.0% | |
| GAATATATGGTTGGAACTTC+AGG | - | tig0025423:49249-49268 | Msa1422590:intron | 35.0% | |
| AGTCATCCAAAATCATCACT+TGG | + | tig0025423:49341-49360 | None:intergenic | 35.0% | |
| AAATACAAAACGAGGACCAA+CGG | + | tig0025423:49373-49392 | None:intergenic | 35.0% | |
| ! | TTCTTCTTCTTTTTCCGTTG+TGG | - | tig0025423:49397-49416 | Msa1422590:CDS | 35.0% |
| ! | TCTCATGGTCACATTTTAAG+AGG | - | tig0025423:49475-49494 | Msa1422590:CDS | 35.0% |
| ! | TGAGTGTGATTTGTAGGGTT+TGG | - | tig0025423:45311-45330 | Msa1422590:three_prime_UTR | 40.0% |
| TGCAAATTCCACTTCGCATT+AGG | - | tig0025423:45364-45383 | Msa1422590:three_prime_UTR | 40.0% | |
| !!! | ATTGCCTTTTGATTTGGTGC+AGG | - | tig0025423:45546-45565 | Msa1422590:CDS | 40.0% |
| !!! | TTGCCTTTTGATTTGGTGCA+GGG | - | tig0025423:45547-45566 | Msa1422590:CDS | 40.0% |
| !! | TGCAGGGCTTTTGTTTACAA+AGG | - | tig0025423:45563-45582 | Msa1422590:CDS | 40.0% |
| !!! | CAAAGGTTTTCTGACGGATT+TGG | - | tig0025423:45580-45599 | Msa1422590:CDS | 40.0% |
| ATCAGAGCTTAAGAGATCTG+CGG | - | tig0025423:45631-45650 | Msa1422590:CDS | 40.0% | |
| AGTGAAGTTAGAACCAGTTC+TGG | - | tig0025423:45686-45705 | Msa1422590:CDS | 40.0% | |
| AGAGATGAACATTCCAGAAC+TGG | + | tig0025423:45702-45721 | None:intergenic | 40.0% | |
| ! | TCTCTAAGAACAAGGTTGGT+TGG | - | tig0025423:45717-45736 | Msa1422590:CDS | 40.0% |
| ! | TAAGAACAAGGTTGGTTGGT+TGG | - | tig0025423:45721-45740 | Msa1422590:CDS | 40.0% |
| ! | AAACTCAGTGTTGAGAACTG+GGG | + | tig0025423:46189-46208 | None:intergenic | 40.0% |
| ! | CAAAACTCAGTGTTGAGAAC+TGG | + | tig0025423:46191-46210 | None:intergenic | 40.0% |
| TGTTGTTCAAAAGAGCCTAG+CGG | + | tig0025423:46214-46233 | None:intergenic | 40.0% | |
| !! | TGCCATTGTTTCTGGTATTG+AGG | - | tig0025423:46627-46646 | Msa1422590:CDS | 40.0% |
| GTCCTCAATACCAGAAACAA+TGG | + | tig0025423:46632-46651 | None:intergenic | 40.0% | |
| TCATGGACCTTTCTTCCAAA+AGG | - | tig0025423:46661-46680 | Msa1422590:CDS | 40.0% | |
| GACCTTTCTTCCAAAAGGTA+TGG | - | tig0025423:46666-46685 | Msa1422590:CDS | 40.0% | |
| !! | TGCCATACCTTTTGGAAGAA+AGG | + | tig0025423:46671-46690 | None:intergenic | 40.0% |
| CCGTACTTACCAAAATAGCA+AGG | + | tig0025423:46923-46942 | None:intergenic | 40.0% | |
| GTAGCCAATCAAATGCTTGA+TGG | + | tig0025423:47633-47652 | None:intergenic | 40.0% | |
| GAGTCACTATAATATCCTGG+TGG | + | tig0025423:47739-47758 | None:intergenic | 40.0% | |
| TGGGAGTCACTATAATATCC+TGG | + | tig0025423:47742-47761 | None:intergenic | 40.0% | |
| CTGGAGAAAATCGGAAATAG+AGG | - | tig0025423:47798-47817 | Msa1422590:intron | 40.0% | |
| AAAGTTAATATAGCTCGGGG+TGG | - | tig0025423:48157-48176 | Msa1422590:CDS | 40.0% | |
| TATCTCACCAATGTGACCAA+AGG | - | tig0025423:48205-48224 | Msa1422590:intron | 40.0% | |
| CTTAGACAAACCTCTGCATT+AGG | + | tig0025423:48247-48266 | None:intergenic | 40.0% | |
| TTGCAGTGAATAAGGATCCA+AGG | + | tig0025423:48390-48409 | None:intergenic | 40.0% | |
| CCAAGAAACTCCCAACTATT+TGG | + | tig0025423:48737-48756 | None:intergenic | 40.0% | |
| CCAAATAGTTGGGAGTTTCT+TGG | - | tig0025423:48734-48753 | Msa1422590:intron | 40.0% | |
| CTCTCTGAGTGTGGAAAAAA+AGG | - | tig0025423:48870-48889 | Msa1422590:intron | 40.0% | |
| TGTGGAAAAAAAGGAGTTGC+AGG | - | tig0025423:48879-48898 | Msa1422590:intron | 40.0% | |
| GAAAAAAAGGAGTTGCAGGT+GGG | - | tig0025423:48883-48902 | Msa1422590:intron | 40.0% | |
| CATTTCTCTCCTTCGATAAC+AGG | + | tig0025423:49105-49124 | None:intergenic | 40.0% | |
| CTGTTATCGAAGGAGAGAAA+TGG | - | tig0025423:49103-49122 | Msa1422590:CDS | 40.0% | |
| AGAAATGGTCAGCAACGAAA+TGG | - | tig0025423:49118-49137 | Msa1422590:CDS | 40.0% | |
| GAAATGGTCAGCAACGAAAT+GGG | - | tig0025423:49119-49138 | Msa1422590:CDS | 40.0% | |
| GGACTCATTTGATAAGACAG+TGG | - | tig0025423:49149-49168 | Msa1422590:CDS | 40.0% | |
| AGCATGAAAGCTGTGAAAGA+TGG | - | tig0025423:49196-49215 | Msa1422590:CDS | 40.0% | |
| GCATGAAAGCTGTGAAAGAT+GGG | - | tig0025423:49197-49216 | Msa1422590:CDS | 40.0% | |
| GATTCTTAGTGCATTCTCCA+AGG | + | tig0025423:49227-49246 | None:intergenic | 40.0% | |
| CAAAATCATCACTTGGAGTC+TGG | + | tig0025423:49334-49353 | None:intergenic | 40.0% | |
| ! | CAGACTCCAAGTGATGATTT+TGG | - | tig0025423:49332-49351 | Msa1422590:intron | 40.0% |
| ! | GATGACTTTCCATTTTCCGT+TGG | - | tig0025423:49354-49373 | Msa1422590:intron | 40.0% |
| ! | CTGATAGTGTTCTAGTCTCA+TGG | - | tig0025423:49460-49479 | Msa1422590:CDS | 40.0% |
| AGTTGGGAAGCTGTAATTGT+AGG | - | tig0025423:49508-49527 | Msa1422590:exon | 40.0% | |
| AAACTCGAATCGGAGAACTA+AGG | + | tig0025423:49612-49631 | None:intergenic | 40.0% | |
| TGCGATCATCGATCCTACTA+AGG | - | tig0025423:45405-45424 | Msa1422590:three_prime_UTR | 45.0% | |
| AAGCCCTGCACCAAATCAAA+AGG | + | tig0025423:45553-45572 | None:intergenic | 45.0% | |
| !! | AGTGTTTGGTGTGTACTGTG+TGG | - | tig0025423:45843-45862 | Msa1422590:intron | 45.0% |
| !! | GTGTTTGGTGTGTACTGTGT+GGG | - | tig0025423:45844-45863 | Msa1422590:intron | 45.0% |
| !! | TGTTTGGTGTGTACTGTGTG+GGG | - | tig0025423:45845-45864 | Msa1422590:intron | 45.0% |
| GATCAGCACACTATGAAGCA+CGG | - | tig0025423:45928-45947 | Msa1422590:CDS | 45.0% | |
| CACACTATGAAGCACGGATA+CGG | - | tig0025423:45934-45953 | Msa1422590:CDS | 45.0% | |
| ACACAACATGTGTCCAACAC+CGG | - | tig0025423:46043-46062 | Msa1422590:intron | 45.0% | |
| CTGCGTCCCAACATATCATA+CGG | + | tig0025423:46150-46169 | None:intergenic | 45.0% | |
| GTTGAGAACTGGGGAATTAC+TGG | + | tig0025423:46180-46199 | None:intergenic | 45.0% | |
| ! | TTCTAGCAAAGGGCACAAAC+AGG | - | tig0025423:46965-46984 | Msa1422590:intron | 45.0% |
| GGTCCCATCAAGCATTTGAT+TGG | - | tig0025423:47626-47645 | Msa1422590:intron | 45.0% | |
| TTATGTATTGGGCAAGGGGA+GGG | + | tig0025423:47991-48010 | None:intergenic | 45.0% | |
| TTTATGTATTGGGCAAGGGG+AGG | + | tig0025423:47992-48011 | None:intergenic | 45.0% | |
| GGTGAGATACATGAGAACAG+TGG | + | tig0025423:48194-48213 | None:intergenic | 45.0% | |
| TTCACCACCTTTGGTCACAT+TGG | + | tig0025423:48215-48234 | None:intergenic | 45.0% | |
| GAACACTGTTTCACCACCTT+TGG | + | tig0025423:48224-48243 | None:intergenic | 45.0% | |
| AACAGTGTTCCCTAATGCAG+AGG | - | tig0025423:48234-48253 | Msa1422590:intron | 45.0% | |
| CATCTCCTTATACAGCCTTG+AGG | - | tig0025423:48351-48370 | Msa1422590:intron | 45.0% | |
| AGAGACCTCAAGGCTGTATA+AGG | + | tig0025423:48359-48378 | None:intergenic | 45.0% | |
| GAGCCAAATTATCTCGTCTG+AGG | - | tig0025423:48459-48478 | Msa1422590:intron | 45.0% | |
| TATTTGAGCACGGGGAAAAG+TGG | + | tig0025423:48613-48632 | None:intergenic | 45.0% | |
| TAGTTGGGAGTTTCTTGGCA+AGG | - | tig0025423:48739-48758 | Msa1422590:intron | 45.0% | |
| AGTTGGGAGTTTCTTGGCAA+GGG | - | tig0025423:48740-48759 | Msa1422590:intron | 45.0% | |
| GATGAAGATCTCTCTGAGTG+TGG | - | tig0025423:48861-48880 | Msa1422590:intron | 45.0% | |
| GGAAAAAAAGGAGTTGCAGG+TGG | - | tig0025423:48882-48901 | Msa1422590:intron | 45.0% | |
| ! | TTTTTCTTTCCTTCCTCCCC+CGG | - | tig0025423:48982-49001 | Msa1422590:intron | 45.0% |
| AGGTTTCACTGCGAATTGTC+CGG | + | tig0025423:49004-49023 | None:intergenic | 45.0% | |
| AATTCGCAGTGAAACCTCGA+AGG | - | tig0025423:49007-49026 | Msa1422590:intron | 45.0% | |
| ATTCGCAGTGAAACCTCGAA+GGG | - | tig0025423:49008-49027 | Msa1422590:intron | 45.0% | |
| ! | GAGTGTCTGGGATAGCATTT+GGG | + | tig0025423:49062-49081 | None:intergenic | 45.0% |
| ! | AGAGTGTCTGGGATAGCATT+TGG | + | tig0025423:49063-49082 | None:intergenic | 45.0% |
| !! | CATGAAGACTGAGAGTGTCT+GGG | + | tig0025423:49074-49093 | None:intergenic | 45.0% |
| TTTGATAAGACAGTGGGAGC+TGG | - | tig0025423:49156-49175 | Msa1422590:CDS | 45.0% | |
| ! | CAACTTTTCCTACAGTAGCC+GGG | + | tig0025423:49279-49298 | None:intergenic | 45.0% |
| ! | GCAACTTTTCCTACAGTAGC+CGG | + | tig0025423:49280-49299 | None:intergenic | 45.0% |
| AAACGAGGACCAACGGAAAA+TGG | + | tig0025423:49366-49385 | None:intergenic | 45.0% | |
| !!! | TAAAATTAAAAACATAATTT+TGG | - | tig0025423:48288-48307 | Msa1422590:intron | 5.0% |
| !! | AAAAAATTGAAAAATTATAA+AGG | + | tig0025423:48324-48343 | None:intergenic | 5.0% |
| !!! | AATTTTTCAATTTTTTTTTT+TGG | - | tig0025423:48328-48347 | Msa1422590:intron | 5.0% |
| CGTAGGAACCTAATGCGAAG+TGG | + | tig0025423:45375-45394 | None:intergenic | 50.0% | |
| TTCGCATTAGGTTCCTACGC+AGG | - | tig0025423:45376-45395 | Msa1422590:three_prime_UTR | 50.0% | |
| AGTAGGATCGATGATCGCAC+TGG | + | tig0025423:45404-45423 | None:intergenic | 50.0% | |
| AGAGCTTAAGAGATCTGCGG+TGG | - | tig0025423:45634-45653 | Msa1422590:CDS | 50.0% | |
| GTGTGGGGCTATGACTGTAT+AGG | - | tig0025423:45860-45879 | Msa1422590:intron | 50.0% | |
| CACAACATGTGTCCAACACC+GGG | - | tig0025423:46044-46063 | Msa1422590:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | + | tig0025423:46081-46100 | None:intergenic | 50.0% | |
| !! | GCTGTGCTGACTATGAAGCA+CGG | + | tig0025423:46092-46111 | None:intergenic | 50.0% |
| CGTATGATATGTTGGGACGC+AGG | - | tig0025423:46148-46167 | Msa1422590:intron | 50.0% | |
| ! | CAACACTGAGTTTTGCCGCT+AGG | - | tig0025423:46196-46215 | Msa1422590:intron | 50.0% |
| GGACGGCCGTATAAAAACTG+CGG | - | tig0025423:46487-46506 | Msa1422590:intron | 50.0% | |
| GACGGCCGTATAAAAACTGC+GGG | - | tig0025423:46488-46507 | Msa1422590:intron | 50.0% | |
| ! | CAAAGGGCACAAACAGGCAT+GGG | - | tig0025423:46971-46990 | Msa1422590:intron | 50.0% |
| GGCTACGGTACACATACAGA+TGG | + | tig0025423:47149-47168 | None:intergenic | 50.0% | |
| ! | TAGTACACCCTTTTCTCCCC+TGG | - | tig0025423:47599-47618 | Msa1422590:intron | 50.0% |
| ! | AGTACACCCTTTTCTCCCCT+GGG | - | tig0025423:47600-47619 | Msa1422590:intron | 50.0% |
| ACCATACCCAGGGGAGAAAA+GGG | + | tig0025423:47609-47628 | None:intergenic | 50.0% | |
| CTCACCAATGTGACCAAAGG+TGG | - | tig0025423:48208-48227 | Msa1422590:intron | 50.0% | |
| GGTAGAGACTAGAGACCTCA+AGG | + | tig0025423:48369-48388 | None:intergenic | 50.0% | |
| GAGGTCTCTAGTCTCTACCT+TGG | - | tig0025423:48370-48389 | Msa1422590:intron | 50.0% | |
| TTTCACTGCGAATTGTCCGG+GGG | + | tig0025423:49001-49020 | None:intergenic | 50.0% | |
| GTTTCACTGCGAATTGTCCG+GGG | + | tig0025423:49002-49021 | None:intergenic | 50.0% | |
| GGTTTCACTGCGAATTGTCC+GGG | + | tig0025423:49003-49022 | None:intergenic | 50.0% | |
| TTCGCAGTGAAACCTCGAAG+GGG | - | tig0025423:49009-49028 | Msa1422590:intron | 50.0% | |
| ! | TGTCTGGGATAGCATTTGGG+TGG | + | tig0025423:49059-49078 | None:intergenic | 50.0% |
| !! | GCATGAAGACTGAGAGTGTC+TGG | + | tig0025423:49075-49094 | None:intergenic | 50.0% |
| GACACTCTCAGTCTTCATGC+AGG | - | tig0025423:49075-49094 | Msa1422590:intron | 50.0% | |
| ! | AGCAACGAAATGGGTTCACG+TGG | - | tig0025423:49128-49147 | Msa1422590:CDS | 50.0% |
| ATAAGACAGTGGGAGCTGGA+GGG | - | tig0025423:49160-49179 | Msa1422590:CDS | 50.0% | |
| ! | TTTTCCTACAGTAGCCGGGA+AGG | + | tig0025423:49275-49294 | None:intergenic | 50.0% |
| GCTTAAGAGATCTGCGGTGG+CGG | - | tig0025423:45637-45656 | Msa1422590:CDS | 55.0% | |
| !! | GCGGTGGCGGATAATTTGTC+CGG | - | tig0025423:45650-45669 | Msa1422590:CDS | 55.0% |
| GTCAGTGTCTGTGTCGTGTC+TGG | + | tig0025423:45963-45982 | None:intergenic | 55.0% | |
| ! | TCCTTGGATTAGGCCTGTCC+CGG | + | tig0025423:46065-46084 | None:intergenic | 55.0% |
| GCACGGACACTCCTTGGATT+AGG | + | tig0025423:46075-46094 | None:intergenic | 55.0% | |
| !!! | GCGCTCGACCCTTGCTATTT+TGG | - | tig0025423:46911-46930 | Msa1422590:intron | 55.0% |
| ! | GCAAAGGGCACAAACAGGCA+TGG | - | tig0025423:46970-46989 | Msa1422590:intron | 55.0% |
| ! | ACCCTTTTCTCCCCTGGGTA+TGG | - | tig0025423:47605-47624 | Msa1422590:intron | 55.0% |
| GACCATACCCAGGGGAGAAA+AGG | + | tig0025423:47610-47629 | None:intergenic | 55.0% | |
| CTTGATGGGACCATACCCAG+GGG | + | tig0025423:47618-47637 | None:intergenic | 55.0% | |
| GCTTGATGGGACCATACCCA+GGG | + | tig0025423:47619-47638 | None:intergenic | 55.0% | |
| TGCTTGATGGGACCATACCC+AGG | + | tig0025423:47620-47639 | None:intergenic | 55.0% | |
| ! | CCTGGTGGATAAGGTGCTTC+TGG | + | tig0025423:47724-47743 | None:intergenic | 55.0% |
| !! | CCAGAAGCACCTTATCCACC+AGG | - | tig0025423:47721-47740 | Msa1422590:intron | 55.0% |
| ATATAGCTCGGGGTGGACAC+CGG | - | tig0025423:48164-48183 | Msa1422590:CDS | 55.0% | |
| ACATGAGAACAGTGGCGACC+CGG | + | tig0025423:48186-48205 | None:intergenic | 55.0% | |
| ! | AGAAGTGCATCTCCCCTTCG+AGG | + | tig0025423:49024-49043 | None:intergenic | 55.0% |
| GCAGGATGCCCTGTTATCGA+AGG | - | tig0025423:49093-49112 | Msa1422590:CDS | 55.0% | |
| GATAAGACAGTGGGAGCTGG+AGG | - | tig0025423:49159-49178 | Msa1422590:CDS | 55.0% | |
| TAAGACAGTGGGAGCTGGAG+GGG | - | tig0025423:49161-49180 | Msa1422590:CDS | 55.0% | |
| !! | TGTGAAAGATGGGCTGCCCT+TGG | - | tig0025423:49207-49226 | Msa1422590:CDS | 55.0% |
| GTTGGAACTTCAGGCCTTCC+CGG | - | tig0025423:49258-49277 | Msa1422590:intron | 55.0% | |
| CATGTGTCCAACACCGGGAC+AGG | - | tig0025423:46049-46068 | Msa1422590:intron | 60.0% | |
| GATTAGGCCTGTCCCGGTGT+TGG | + | tig0025423:46059-46078 | None:intergenic | 60.0% | |
| ACCGGGACAGGCCTAATCCA+AGG | - | tig0025423:46061-46080 | Msa1422590:intron | 60.0% | |
| TGTATTGGGCAAGGGGAGGG+TGG | + | tig0025423:47988-48007 | None:intergenic | 60.0% | |
| TATAGCTCGGGGTGGACACC+GGG | - | tig0025423:48165-48184 | Msa1422590:CDS | 60.0% | |
| ! | GATCGCACTGGTGCCTGCGT+AGG | + | tig0025423:45392-45411 | None:intergenic | 65.0% |
| GCGAATTGTCCGGGGGAGGA+AGG | + | tig0025423:48994-49013 | None:intergenic | 65.0% | |
| CACTGCGAATTGTCCGGGGG+AGG | + | tig0025423:48998-49017 | None:intergenic | 65.0% | |
| CAGGCCTTCCCGGCTACTGT+AGG | - | tig0025423:49268-49287 | Msa1422590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025423 | gene | 45155 | 49667 | 45155 | ID=Msa1422590;Name=Msa1422590 |
| tig0025423 | mRNA | 45155 | 49667 | 45155 | ID=Msa1422590-mRNA-1;Parent=Msa1422590;Name=Msa1422590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=155|1|1|1|1|1|6|356|303 |
| tig0025423 | exon | 45155 | 45806 | 45155 | ID=Msa1422590-mRNA-1:exon:2705;Parent=Msa1422590-mRNA-1 |
| tig0025423 | exon | 45922 | 45997 | 45922 | ID=Msa1422590-mRNA-1:exon:2704;Parent=Msa1422590-mRNA-1 |
| tig0025423 | exon | 46567 | 46742 | 46567 | ID=Msa1422590-mRNA-1:exon:2703;Parent=Msa1422590-mRNA-1 |
| tig0025423 | exon | 48140 | 48197 | 48140 | ID=Msa1422590-mRNA-1:exon:2702;Parent=Msa1422590-mRNA-1 |
| tig0025423 | exon | 49092 | 49254 | 49092 | ID=Msa1422590-mRNA-1:exon:2701;Parent=Msa1422590-mRNA-1 |
| tig0025423 | exon | 49370 | 49667 | 49370 | ID=Msa1422590-mRNA-1:exon:2700;Parent=Msa1422590-mRNA-1 |
| tig0025423 | five_prime_UTR | 49513 | 49667 | 49513 | ID=Msa1422590-mRNA-1:five_prime_utr;Parent=Msa1422590-mRNA-1 |
| tig0025423 | CDS | 49370 | 49512 | 49370 | ID=Msa1422590-mRNA-1:cds;Parent=Msa1422590-mRNA-1 |
| tig0025423 | CDS | 49092 | 49254 | 49092 | ID=Msa1422590-mRNA-1:cds;Parent=Msa1422590-mRNA-1 |
| tig0025423 | CDS | 48140 | 48197 | 48140 | ID=Msa1422590-mRNA-1:cds;Parent=Msa1422590-mRNA-1 |
| tig0025423 | CDS | 46567 | 46742 | 46567 | ID=Msa1422590-mRNA-1:cds;Parent=Msa1422590-mRNA-1 |
| tig0025423 | CDS | 45922 | 45997 | 45922 | ID=Msa1422590-mRNA-1:cds;Parent=Msa1422590-mRNA-1 |
| tig0025423 | CDS | 45511 | 45806 | 45511 | ID=Msa1422590-mRNA-1:cds;Parent=Msa1422590-mRNA-1 |
| tig0025423 | three_prime_UTR | 45155 | 45510 | 45155 | ID=Msa1422590-mRNA-1:three_prime_utr;Parent=Msa1422590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
