Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195640 | XP_003594053.1 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195640 | sp|Q8LAN3|P4H4_ARATH | 78.148 | 270 | 57 | 1 | 34 | 303 | 31 | 298 | 1.76e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195640 | G7IFM9 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa0195640 | 0.817050 | 4.031537e-52 | -8.615850e-47 |
| Msa0195640 | Msa0379650 | 0.822563 | 2.215925e-53 | -8.615850e-47 |
| Msa0195640 | Msa0417970 | 0.804806 | 1.810447e-49 | -8.615850e-47 |
| Msa0195640 | Msa0527190 | 0.805712 | 1.169148e-49 | -8.615850e-47 |
| Msa0195640 | Msa0651550 | 0.801220 | 9.978929e-49 | -8.615850e-47 |
| Msa0195640 | Msa0674480 | 0.811629 | 6.361774e-51 | -8.615850e-47 |
| Msa0195640 | Msa0910960 | 0.800040 | 1.736812e-48 | -8.615850e-47 |
| Msa0195640 | Msa1031350 | 0.819167 | 1.338952e-52 | -8.615850e-47 |
| Msa0195640 | Msa1070460 | 0.837056 | 6.507909e-57 | -8.615850e-47 |
| Msa0195640 | Msa1083700 | 0.823873 | 1.095876e-53 | -8.615850e-47 |
| Msa0195640 | Msa1345100 | 0.801185 | 1.014616e-48 | -8.615850e-47 |
| Msa0195640 | Msa1414820 | 0.802258 | 6.110846e-49 | -8.615850e-47 |
| Msa0195640 | Msa1422590 | 0.997397 | 8.321250e-242 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195640 | MtrunA17_Chr2g0286811 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| Msa0195640 | MtrunA17_Chr4g0066531 | 83.094 | 278 | 44 | 2 | 27 | 303 | 23 | 298 | 1.57e-175 | 487 |
| Msa0195640 | MtrunA17_Chr6g0452281 | 61.702 | 282 | 97 | 4 | 26 | 303 | 37 | 311 | 4.66e-121 | 349 |
| Msa0195640 | MtrunA17_Chr5g0406051 | 56.019 | 216 | 87 | 2 | 40 | 253 | 78 | 287 | 1.34e-83 | 253 |
| Msa0195640 | MtrunA17_Chr8g0371221 | 55.140 | 214 | 92 | 1 | 40 | 253 | 67 | 276 | 9.35e-81 | 246 |
| Msa0195640 | MtrunA17_Chr3g0143381 | 54.976 | 211 | 91 | 1 | 43 | 253 | 72 | 278 | 1.37e-80 | 245 |
| Msa0195640 | MtrunA17_Chr8g0371281 | 51.402 | 214 | 100 | 1 | 40 | 253 | 66 | 275 | 8.40e-75 | 230 |
| Msa0195640 | MtrunA17_Chr8g0371251 | 50.935 | 214 | 101 | 1 | 40 | 253 | 68 | 277 | 1.14e-72 | 225 |
| Msa0195640 | MtrunA17_Chr8g0371231 | 50.249 | 201 | 96 | 1 | 50 | 250 | 2 | 198 | 1.87e-67 | 209 |
| Msa0195640 | MtrunA17_Chr6g0470551 | 41.758 | 273 | 131 | 6 | 35 | 303 | 49 | 297 | 1.80e-62 | 199 |
| Msa0195640 | MtrunA17_Chr1g0213811 | 45.833 | 216 | 99 | 3 | 38 | 248 | 73 | 275 | 9.25e-57 | 184 |
| Msa0195640 | MtrunA17_Chr3g0143361 | 50.838 | 179 | 78 | 2 | 72 | 250 | 1 | 169 | 4.36e-56 | 180 |
| Msa0195640 | MtrunA17_Chr4g0053801 | 41.667 | 228 | 118 | 6 | 26 | 249 | 73 | 289 | 2.24e-50 | 168 |
| Msa0195640 | MtrunA17_Chr8g0371241 | 45.714 | 175 | 75 | 2 | 76 | 250 | 4 | 158 | 1.03e-47 | 157 |
| Msa0195640 | MtrunA17_Chr3g0143371 | 47.205 | 161 | 76 | 1 | 72 | 232 | 1 | 152 | 3.44e-43 | 145 |
| Msa0195640 | MtrunA17_Chr5g0401481 | 37.398 | 246 | 119 | 8 | 28 | 249 | 69 | 303 | 3.33e-42 | 147 |
| Msa0195640 | MtrunA17_Chr3g0143351 | 43.478 | 184 | 89 | 3 | 72 | 253 | 1 | 171 | 3.14e-41 | 141 |
| Msa0195640 | MtrunA17_Chr3g0098671 | 55.932 | 59 | 25 | 1 | 122 | 180 | 31 | 88 | 2.08e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195640 | AT5G18900.1 | 78.148 | 270 | 57 | 1 | 34 | 303 | 31 | 298 | 1.79e-162 | 454 |
| Msa0195640 | AT3G06300.1 | 75.849 | 265 | 62 | 1 | 39 | 303 | 37 | 299 | 2.53e-152 | 428 |
| Msa0195640 | AT3G28480.1 | 60.000 | 275 | 105 | 2 | 29 | 303 | 45 | 314 | 3.63e-125 | 360 |
| Msa0195640 | AT3G28490.1 | 61.852 | 270 | 94 | 4 | 35 | 303 | 27 | 288 | 6.57e-120 | 346 |
| Msa0195640 | AT3G28480.2 | 56.184 | 283 | 111 | 4 | 29 | 303 | 45 | 322 | 5.69e-113 | 330 |
| Msa0195640 | AT1G20270.1 | 47.059 | 272 | 121 | 2 | 1 | 253 | 18 | 285 | 2.86e-82 | 250 |
| Msa0195640 | AT4G35810.1 | 55.189 | 212 | 91 | 2 | 43 | 254 | 83 | 290 | 9.21e-79 | 241 |
| Msa0195640 | AT4G35810.2 | 55.189 | 212 | 91 | 2 | 43 | 254 | 83 | 290 | 9.21e-79 | 241 |
| Msa0195640 | AT2G17720.1 | 54.206 | 214 | 94 | 1 | 40 | 253 | 80 | 289 | 3.77e-77 | 237 |
| Msa0195640 | AT5G66060.1 | 53.271 | 214 | 96 | 1 | 40 | 253 | 78 | 287 | 2.46e-75 | 233 |
| Msa0195640 | AT4G25600.1 | 39.568 | 278 | 137 | 5 | 26 | 303 | 45 | 291 | 5.37e-65 | 206 |
| Msa0195640 | AT2G43080.1 | 47.489 | 219 | 99 | 3 | 35 | 249 | 72 | 278 | 7.28e-59 | 190 |
| Msa0195640 | AT4G25600.3 | 38.314 | 261 | 130 | 5 | 43 | 303 | 1 | 230 | 9.91e-57 | 183 |
| Msa0195640 | AT4G25600.4 | 38.672 | 256 | 126 | 5 | 48 | 303 | 3 | 227 | 2.58e-56 | 182 |
| Msa0195640 | AT4G25600.2 | 38.672 | 256 | 126 | 5 | 48 | 303 | 15 | 239 | 2.83e-56 | 182 |
| Msa0195640 | AT4G35820.1 | 46.465 | 198 | 72 | 3 | 43 | 232 | 91 | 262 | 7.74e-50 | 166 |
| Msa0195640 | AT5G66060.2 | 51.829 | 164 | 73 | 2 | 40 | 203 | 78 | 235 | 1.02e-49 | 165 |
| Msa0195640 | AT4G33910.1 | 41.706 | 211 | 110 | 6 | 43 | 249 | 81 | 282 | 3.02e-47 | 160 |
| Msa0195640 | AT1G20270.2 | 42.391 | 184 | 87 | 1 | 1 | 165 | 18 | 201 | 3.63e-45 | 152 |
| Msa0195640 | AT1G20270.3 | 42.391 | 184 | 87 | 1 | 1 | 165 | 18 | 201 | 3.63e-45 | 152 |
| Msa0195640 | AT2G23096.1 | 37.264 | 212 | 125 | 2 | 43 | 254 | 71 | 274 | 2.45e-43 | 150 |
| Msa0195640 | AT2G43080.2 | 42.857 | 98 | 54 | 1 | 35 | 130 | 72 | 169 | 3.39e-16 | 75.9 |
Find 96 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAGGATGCCATTGTTTC+TGG | 0.152632 | 2_1:-12504118 | Msa0195640:intron |
| CAGACTCCAAGTGATGATTT+TGG | 0.182040 | 2_1:-12501405 | Msa0195640:three_prime_UTR |
| TCATTGGTTACTATGTAAAA+TGG | 0.240634 | 2_1:-12501182 | Msa0195640:three_prime_UTR |
| AAACGAGGACCAACGGAAAA+TGG | 0.247660 | 2_1:+12501374 | None:intergenic |
| CATTTCTCTCCTTCGATAAC+AGG | 0.280827 | 2_1:+12501635 | None:intergenic |
| CACTAAGAATCCTGAATATA+TGG | 0.282225 | 2_1:-12501501 | Msa0195640:CDS |
| GAATATATGGTTGGAACTTC+AGG | 0.307119 | 2_1:-12501488 | Msa0195640:CDS |
| CTTAGACAAACCTCTGCATT+AGG | 0.325102 | 2_1:+12502493 | None:intergenic |
| TGCAAATTCCACTTCGCATT+AGG | 0.330323 | 2_1:-12505373 | Msa0195640:CDS |
| AAGAAATGAGTGTGATTTGT+AGG | 0.347408 | 2_1:-12505432 | Msa0195640:exon |
| AGTGAAGTTAGAACCAGTTC+TGG | 0.354554 | 2_1:-12505051 | Msa0195640:CDS |
| GAAACTTGTTTGACCTTAGT+AGG | 0.360238 | 2_1:+12505319 | None:intergenic |
| GAAGTTCCAACCATATATTC+AGG | 0.361576 | 2_1:+12501491 | None:intergenic |
| CAAAATCATCACTTGGAGTC+TGG | 0.363159 | 2_1:+12501406 | None:intergenic |
| GTTGGAACTTCAGGCCTTCC+CGG | 0.373927 | 2_1:-12501479 | Msa0195640:CDS |
| GAACACTGTTTCACCACCTT+TGG | 0.383993 | 2_1:+12502516 | None:intergenic |
| GCATGAAGACTGAGAGTGTC+TGG | 0.388702 | 2_1:+12501665 | None:intergenic |
| CTAAGGTCAAACAAGTTTCA+TGG | 0.401454 | 2_1:-12505315 | Msa0195640:CDS |
| TGAGTGTGATTTGTAGGGTT+TGG | 0.422719 | 2_1:-12505426 | Msa0195640:CDS |
| AGAGTGTCTGGGATAGCATT+TGG | 0.424892 | 2_1:+12501677 | None:intergenic |
| AGAAATGGTCAGCAACGAAA+TGG | 0.434699 | 2_1:-12501619 | Msa0195640:CDS |
| TGCCATTGTTTCTGGTATTG+AGG | 0.440359 | 2_1:-12504110 | Msa0195640:CDS |
| AGAGATGAACATTCCAGAAC+TGG | 0.440968 | 2_1:+12505038 | None:intergenic |
| GAGTGTCTGGGATAGCATTT+GGG | 0.440994 | 2_1:+12501678 | None:intergenic |
| TAAATTTATAAAACTCGAAT+CGG | 0.442324 | 2_1:+12501118 | None:intergenic |
| TCATGGACCTTTCTTCCAAA+AGG | 0.445573 | 2_1:-12504076 | Msa0195640:intron |
| AGCATGAAAGCTGTGAAAGA+TGG | 0.459553 | 2_1:-12501541 | Msa0195640:CDS |
| AGTTGGGAAGCTGTAATTGT+AGG | 0.459774 | 2_1:-12501229 | Msa0195640:three_prime_UTR |
| CTGATAAAGTTAATATAGCT+CGG | 0.467874 | 2_1:-12502585 | Msa0195640:CDS |
| TTCACTCAATTTACTCTCAC+CGG | 0.475756 | 2_1:+12505068 | None:intergenic |
| ATCTAGTTAGAAATTAAGAA+AGG | 0.477176 | 2_1:-12505458 | Msa0195640:five_prime_UTR |
| TTAGACAAACCTCTGCATTA+GGG | 0.480644 | 2_1:+12502494 | None:intergenic |
| TTCTAACTAGATTCAAACTT+CGG | 0.483038 | 2_1:+12505469 | None:intergenic |
| CTGATAGTGTTCTAGTCTCA+TGG | 0.484285 | 2_1:-12501277 | Msa0195640:three_prime_UTR |
| GCAGTCGGTTGTTGATTTCG+TGG | 0.489379 | 2_1:-12501090 | None:intergenic |
| TGATAAAGTTAATATAGCTC+GGG | 0.491118 | 2_1:-12502584 | Msa0195640:CDS |
| AGAAATGAGTGTGATTTGTA+GGG | 0.494069 | 2_1:-12505431 | Msa0195640:exon |
| TATAAATTTATTAAAGCAGT+CGG | 0.494080 | 2_1:-12501105 | Msa0195640:three_prime_UTR |
| ACATCATAAATTGTCTGAAA+CGG | 0.501156 | 2_1:-12501898 | Msa0195640:CDS |
| TTTGATAAGACAGTGGGAGC+TGG | 0.502422 | 2_1:-12501581 | Msa0195640:CDS |
| GAAATGGTCAGCAACGAAAT+GGG | 0.504240 | 2_1:-12501618 | Msa0195640:CDS |
| TTCACCACCTTTGGTCACAT+TGG | 0.505157 | 2_1:+12502525 | None:intergenic |
| AGAAGTGCATCTCCCCTTCG+AGG | 0.514605 | 2_1:+12501716 | None:intergenic |
| CTGTTATCGAAGGAGAGAAA+TGG | 0.515658 | 2_1:-12501634 | Msa0195640:CDS |
| TTGAGGACAAAATTTCATCA+TGG | 0.521859 | 2_1:-12504093 | Msa0195640:CDS |
| TGCGATCATCGATCCTACTA+AGG | 0.523081 | 2_1:-12505332 | Msa0195640:CDS |
| TGTGAAAGATGGGCTGCCCT+TGG | 0.532464 | 2_1:-12501530 | Msa0195640:CDS |
| ATATAGCTCGGGGTGGACAC+CGG | 0.534530 | 2_1:-12502573 | Msa0195640:CDS |
| TATAGCTCGGGGTGGACACC+GGG | 0.537697 | 2_1:-12502572 | Msa0195640:CDS |
| AAGAATCCTGAATATATGGT+TGG | 0.543672 | 2_1:-12501497 | Msa0195640:CDS |
| AAATACAAAACGAGGACCAA+CGG | 0.543863 | 2_1:+12501367 | None:intergenic |
| GTTTCAGACAATTTATGATG+TGG | 0.544754 | 2_1:+12501900 | None:intergenic |
| AAACTCGAATCGGAGAACTA+AGG | 0.546263 | 2_1:+12501128 | None:intergenic |
| GCTTAAGAGATCTGCGGTGG+CGG | 0.551432 | 2_1:-12505100 | Msa0195640:CDS |
| TAAGACAGTGGGAGCTGGAG+GGG | 0.554702 | 2_1:-12501576 | Msa0195640:CDS |
| GATTCTTAGTGCATTCTCCA+AGG | 0.556485 | 2_1:+12501513 | None:intergenic |
| AAGTCATGTTAGAAGTGTAA+TGG | 0.568423 | 2_1:-12501437 | Msa0195640:exon |
| CAGGCCTTCCCGGCTACTGT+AGG | 0.569192 | 2_1:-12501469 | Msa0195640:CDS |
| GACACTCTCAGTCTTCATGC+AGG | 0.570274 | 2_1:-12501662 | Msa0195640:CDS |
| GCGGTGGCGGATAATTTGTC+CGG | 0.571666 | 2_1:-12505087 | Msa0195640:CDS |
| GCATGAAAGCTGTGAAAGAT+GGG | 0.572614 | 2_1:-12501540 | Msa0195640:CDS |
| GATAAGACAGTGGGAGCTGG+AGG | 0.578221 | 2_1:-12501578 | Msa0195640:CDS |
| AGTCATCCAAAATCATCACT+TGG | 0.580213 | 2_1:+12501399 | None:intergenic |
| GACTCATTTGATAAGACAGT+GGG | 0.582863 | 2_1:-12501587 | Msa0195640:CDS |
| GATCGCACTGGTGCCTGCGT+AGG | 0.583047 | 2_1:+12505348 | None:intergenic |
| GTCCTCAATACCAGAAACAA+TGG | 0.584336 | 2_1:+12504108 | None:intergenic |
| ACATGAGAACAGTGGCGACC+CGG | 0.584634 | 2_1:+12502554 | None:intergenic |
| ATTTCTCTCCTTCGATAACA+GGG | 0.593078 | 2_1:+12501636 | None:intergenic |
| ATTCTTAGTGCATTCTCCAA+GGG | 0.593731 | 2_1:+12501514 | None:intergenic |
| CTCACCAATGTGACCAAAGG+TGG | 0.594456 | 2_1:-12502529 | Msa0195640:CDS |
| ATAAGACAGTGGGAGCTGGA+GGG | 0.609232 | 2_1:-12501577 | Msa0195640:CDS |
| AATTCGCAGTGAAACCTCGA+AGG | 0.610953 | 2_1:-12501730 | Msa0195640:intron |
| AACAAGTTTCATGGAAACCA+AGG | 0.611153 | 2_1:-12505306 | Msa0195640:intron |
| GATGAAGATCTCTCTGAGTG+TGG | 0.611563 | 2_1:-12501876 | Msa0195640:CDS |
| AGTAGGATCGATGATCGCAC+TGG | 0.616555 | 2_1:+12505336 | None:intergenic |
| AACAGTGTTCCCTAATGCAG+AGG | 0.619999 | 2_1:-12502503 | Msa0195640:intron |
| TCAGCAAAGTAATCATAATG+TGG | 0.621068 | 2_1:+12502604 | None:intergenic |
| GCAGGATGCCCTGTTATCGA+AGG | 0.625361 | 2_1:-12501644 | Msa0195640:CDS |
| CATGAAGACTGAGAGTGTCT+GGG | 0.629666 | 2_1:+12501666 | None:intergenic |
| CGTAGGAACCTAATGCGAAG+TGG | 0.633908 | 2_1:+12505365 | None:intergenic |
| ATTCGCAGTGAAACCTCGAA+GGG | 0.636214 | 2_1:-12501729 | Msa0195640:intron |
| TTCGCATTAGGTTCCTACGC+AGG | 0.649736 | 2_1:-12505361 | Msa0195640:CDS |
| GATAAAGTTAATATAGCTCG+GGG | 0.655465 | 2_1:-12502583 | Msa0195640:CDS |
| AGCAACGAAATGGGTTCACG+TGG | 0.656742 | 2_1:-12501609 | Msa0195640:CDS |
| TATCTCACCAATGTGACCAA+AGG | 0.657014 | 2_1:-12502532 | Msa0195640:CDS |
| TGTCTGGGATAGCATTTGGG+TGG | 0.659573 | 2_1:+12501681 | None:intergenic |
| AATGTTCATCTCTAAGAACA+AGG | 0.670043 | 2_1:-12505028 | Msa0195640:intron |
| AAAGTTAATATAGCTCGGGG+TGG | 0.676845 | 2_1:-12502580 | Msa0195640:CDS |
| AGAGCTTAAGAGATCTGCGG+TGG | 0.677552 | 2_1:-12505103 | Msa0195640:CDS |
| GGACTCATTTGATAAGACAG+TGG | 0.688517 | 2_1:-12501588 | Msa0195640:CDS |
| AAATACATTACAATCCACAA+CGG | 0.691499 | 2_1:+12501326 | None:intergenic |
| ATCAGAGCTTAAGAGATCTG+CGG | 0.704098 | 2_1:-12505106 | Msa0195640:CDS |
| AATTTGCAGATCAATAACAA+TGG | 0.708544 | 2_1:+12505388 | None:intergenic |
| CAAGTATTAAGATATGAGCA+CGG | 0.708863 | 2_1:-12502640 | Msa0195640:CDS |
| TTCGCAGTGAAACCTCGAAG+GGG | 0.712408 | 2_1:-12501728 | Msa0195640:intron |
| GGTGAGATACATGAGAACAG+TGG | 0.745524 | 2_1:+12502546 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTATTTTATTTTGA+AGG | - | chr2_1:12502238-12502257 | Msa0195640:intron | 10.0% |
| !! | AAATAAAATTAGTAATAACA+GGG | + | chr2_1:12502727-12502746 | None:intergenic | 10.0% |
| !! | AAAATAAAATTAGTAATAAC+AGG | + | chr2_1:12502728-12502747 | None:intergenic | 10.0% |
| !! | AAAAAAAATTGAAAAGTTTA+TGG | - | chr2_1:12504513-12504532 | Msa0195640:intron | 10.0% |
| !! | TTATGATATACGAAAATTAA+AGG | - | chr2_1:12503043-12503062 | Msa0195640:intron | 15.0% |
| !! | TATGATATACGAAAATTAAA+GGG | - | chr2_1:12503044-12503063 | Msa0195640:intron | 15.0% |
| !!! | TAAATTGTTATTTCAGTTTT+GGG | + | chr2_1:12503698-12503717 | None:intergenic | 15.0% |
| !!! | AATTTGTGAATATTTTGTTA+TGG | + | chr2_1:12503873-12503892 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGTTTTATGTATT+GGG | + | chr2_1:12503939-12503958 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTGTTTTATGTAT+TGG | + | chr2_1:12503940-12503959 | None:intergenic | 15.0% |
| !! | TAAATTTATAAAACTCGAAT+CGG | + | chr2_1:12505559-12505578 | None:intergenic | 15.0% |
| !! | TATAAATTTATTAAAGCAGT+CGG | - | chr2_1:12505569-12505588 | Msa0195640:five_prime_UTR | 15.0% |
| !! | ATCTAGTTAGAAATTAAGAA+AGG | - | chr2_1:12501216-12501235 | Msa0195640:three_prime_UTR | 20.0% |
| !! | TCTATAATTGCAAATTCTTT+AGG | - | chr2_1:12501703-12501722 | Msa0195640:CDS | 20.0% |
| !! | GGAATTATCTATTATCTATT+TGG | - | chr2_1:12501818-12501837 | Msa0195640:intron | 20.0% |
| !!! | ATTTTTTGTTCTATATTGTC+TGG | - | chr2_1:12502743-12502762 | Msa0195640:intron | 20.0% |
| !!! | TAAATACAAACCATTTGTTT+TGG | - | chr2_1:12502768-12502787 | Msa0195640:intron | 20.0% |
| !! | ACATAAACAATTAAAATGAG+TGG | - | chr2_1:12502797-12502816 | Msa0195640:intron | 20.0% |
| !! | GTCATGTGATTATTTAAATA+AGG | - | chr2_1:12503287-12503306 | Msa0195640:intron | 20.0% |
| !!! | TACTTAATATCAGTTTTTGA+AGG | - | chr2_1:12503360-12503379 | Msa0195640:intron | 20.0% |
| !!! | ATTGAATTTAGTTTTCAAAC+AGG | - | chr2_1:12503435-12503454 | Msa0195640:intron | 20.0% |
| !!! | CTAAATTGTTATTTCAGTTT+TGG | + | chr2_1:12503699-12503718 | None:intergenic | 20.0% |
| !! | AAATGCAATACTTCTTAATT+TGG | + | chr2_1:12503763-12503782 | None:intergenic | 20.0% |
| !! | CAGAAAAAAAAATATGAACT+TGG | - | chr2_1:12503950-12503969 | Msa0195640:intron | 20.0% |
| !! | AAAAAAAAATATGAACTTGG+AGG | - | chr2_1:12503953-12503972 | Msa0195640:intron | 20.0% |
| !!! | TTCTTCTGTATTATTTTGTA+AGG | - | chr2_1:12504872-12504891 | Msa0195640:intron | 20.0% |
| !! | AGAAAAAAAAATACAAAACG+AGG | + | chr2_1:12505318-12505337 | None:intergenic | 20.0% |
| !!! | GATTCGAATTTTTTTTTCAT+TGG | - | chr2_1:12505476-12505495 | Msa0195640:five_prime_UTR | 20.0% |
| ! | TTCTAACTAGATTCAAACTT+CGG | + | chr2_1:12501208-12501227 | None:intergenic | 25.0% |
| ! | AATTTGCAGATCAATAACAA+TGG | + | chr2_1:12501289-12501308 | None:intergenic | 25.0% |
| !! | CACATTTTCACAACAAAATT+TGG | + | chr2_1:12501432-12501451 | None:intergenic | 25.0% |
| !!! | ATAGTTATTGCCTTTTGATT+TGG | - | chr2_1:12501477-12501496 | Msa0195640:CDS | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr2_1:12501926-12501945 | None:intergenic | 25.0% |
| ! | ACAACAACAAAGCATATAAA+AGG | + | chr2_1:12502190-12502209 | None:intergenic | 25.0% |
| ! | GATTCTATACATGAATAACA+TGG | - | chr2_1:12502352-12502371 | Msa0195640:intron | 25.0% |
| ! | ATGAATAACATGGAATGTTT+GGG | - | chr2_1:12502362-12502381 | Msa0195640:intron | 25.0% |
| ! | TTCATAGAATTCAGAAAGTA+TGG | + | chr2_1:12502510-12502529 | None:intergenic | 25.0% |
| !!! | ACTCTGTGTTGTTATTTTAT+AGG | - | chr2_1:12502540-12502559 | Msa0195640:CDS | 25.0% |
| ! | AAAGTCATGAATAAAATCAG+TGG | - | chr2_1:12502633-12502652 | Msa0195640:CDS | 25.0% |
| ! | AAAATAATGTCTTCTAGCAA+AGG | - | chr2_1:12502891-12502910 | Msa0195640:intron | 25.0% |
| ! | AAATAATGTCTTCTAGCAAA+GGG | - | chr2_1:12502892-12502911 | Msa0195640:intron | 25.0% |
| ! | CAAACCTAAAATTAGAATCA+CGG | + | chr2_1:12503018-12503037 | None:intergenic | 25.0% |
| ! | TAAGAAACTTTAAATGGCTA+CGG | + | chr2_1:12503101-12503120 | None:intergenic | 25.0% |
| ! | CAGACTTAAGAAACTTTAAA+TGG | + | chr2_1:12503107-12503126 | None:intergenic | 25.0% |
| ! | TCAAACTCAAAATAGGTAAT+AGG | + | chr2_1:12503149-12503168 | None:intergenic | 25.0% |
| ! | TTCATAGTCAAACTCAAAAT+AGG | + | chr2_1:12503156-12503175 | None:intergenic | 25.0% |
| ! | AGAACATAATTTAATGGAGT+TGG | + | chr2_1:12503393-12503412 | None:intergenic | 25.0% |
| ! | ACTAAATTCAATGCTAAAAG+TGG | + | chr2_1:12503427-12503446 | None:intergenic | 25.0% |
| ! | CTGATAAAGTTAATATAGCT+CGG | - | chr2_1:12504089-12504108 | Msa0195640:CDS | 25.0% |
| ! | TGATAAAGTTAATATAGCTC+GGG | - | chr2_1:12504090-12504109 | Msa0195640:CDS | 25.0% |
| ! | ATTGAAAAGTTTATGGTTGA+TGG | - | chr2_1:12504520-12504539 | Msa0195640:intron | 25.0% |
| ! | TTGAAAAGTTTATGGTTGAT+GGG | - | chr2_1:12504521-12504540 | Msa0195640:intron | 25.0% |
| ! | ATAGTCAAAATATTTGAGCA+CGG | + | chr2_1:12504560-12504579 | None:intergenic | 25.0% |
| ! | TTGACTATACTTATGAACAA+TGG | - | chr2_1:12504572-12504591 | Msa0195640:intron | 25.0% |
| ! | TGAATTCTATACCAAATAGT+TGG | - | chr2_1:12504660-12504679 | Msa0195640:intron | 25.0% |
| ! | GAATTCTATACCAAATAGTT+GGG | - | chr2_1:12504661-12504680 | Msa0195640:intron | 25.0% |
| ! | ACATCATAAATTGTCTGAAA+CGG | - | chr2_1:12504776-12504795 | Msa0195640:intron | 25.0% |
| ! | AAATACATTACAATCCACAA+CGG | + | chr2_1:12505351-12505370 | None:intergenic | 25.0% |
| !! | TCATTGGTTACTATGTAAAA+TGG | - | chr2_1:12505492-12505511 | Msa0195640:five_prime_UTR | 25.0% |
| ! | AAGAAATGAGTGTGATTTGT+AGG | - | chr2_1:12501242-12501261 | Msa0195640:three_prime_UTR | 30.0% |
| ! | AGAAATGAGTGTGATTTGTA+GGG | - | chr2_1:12501243-12501262 | Msa0195640:three_prime_UTR | 30.0% |
| ! | TGTTTACAAAGGTTTTCTGA+CGG | - | chr2_1:12501511-12501530 | Msa0195640:CDS | 30.0% |
| ! | AATGTTCATCTCTAAGAACA+AGG | - | chr2_1:12501646-12501665 | Msa0195640:CDS | 30.0% |
| TTTGGCATAAGATTGATGTT+GGG | + | chr2_1:12501758-12501777 | None:intergenic | 30.0% | |
| ATTTGGCATAAGATTGATGT+TGG | + | chr2_1:12501759-12501778 | None:intergenic | 30.0% | |
| TCTTATGCCAAATTAGTGTT+TGG | - | chr2_1:12501766-12501785 | Msa0195640:intron | 30.0% | |
| !!! | AAAGAGCACTGTTTTAAACA+AGG | - | chr2_1:12502330-12502349 | Msa0195640:intron | 30.0% |
| CATGAATAACATGGAATGTT+TGG | - | chr2_1:12502361-12502380 | Msa0195640:intron | 30.0% | |
| ! | TTTGTGAGTTGTCTGAATTT+TGG | - | chr2_1:12502403-12502422 | Msa0195640:intron | 30.0% |
| !! | TCAGAAAGTATGGTTGTTTT+GGG | + | chr2_1:12502500-12502519 | None:intergenic | 30.0% |
| !! | TTCAGAAAGTATGGTTGTTT+TGG | + | chr2_1:12502501-12502520 | None:intergenic | 30.0% |
| TTGAGGACAAAATTTCATCA+TGG | - | chr2_1:12502581-12502600 | Msa0195640:CDS | 30.0% | |
| ! | TTTGTATATGCCATACCTTT+TGG | + | chr2_1:12502616-12502635 | None:intergenic | 30.0% |
| TAGGACAAAGATATAAGTTC+AGG | + | chr2_1:12502675-12502694 | None:intergenic | 30.0% | |
| ATCACTGTATCTATTTCACT+AGG | + | chr2_1:12502694-12502713 | None:intergenic | 30.0% | |
| ATGTATCAAGCCAAAACAAA+TGG | + | chr2_1:12502781-12502800 | None:intergenic | 30.0% | |
| AATGCAGAGAATAATAAGCT+CGG | + | chr2_1:12502826-12502845 | None:intergenic | 30.0% | |
| ! | GAATCCGTGATTCTAATTTT+AGG | - | chr2_1:12503011-12503030 | Msa0195640:intron | 30.0% |
| ACAGATGGAATAGATAGATT+GGG | + | chr2_1:12503071-12503090 | None:intergenic | 30.0% | |
| TACAGATGGAATAGATAGAT+TGG | + | chr2_1:12503072-12503091 | None:intergenic | 30.0% | |
| TTGAGTTTGACTATGAAGTT+TGG | - | chr2_1:12503159-12503178 | Msa0195640:intron | 30.0% | |
| TACAAGTTCAAAGTTCATAG+GGG | + | chr2_1:12503230-12503249 | None:intergenic | 30.0% | |
| GTACAAGTTCAAAGTTCATA+GGG | + | chr2_1:12503231-12503250 | None:intergenic | 30.0% | |
| AGTACAAGTTCAAAGTTCAT+AGG | + | chr2_1:12503232-12503251 | None:intergenic | 30.0% | |
| GAGCACAGAACATAATTTAA+TGG | + | chr2_1:12503399-12503418 | None:intergenic | 30.0% | |
| CAGATTGGACAAGTAATATA+GGG | + | chr2_1:12503461-12503480 | None:intergenic | 30.0% | |
| ACAGATTGGACAAGTAATAT+AGG | + | chr2_1:12503462-12503481 | None:intergenic | 30.0% | |
| CAATCTGTATATCTCAATGT+CGG | - | chr2_1:12503474-12503493 | Msa0195640:intron | 30.0% | |
| TCGGAAGAACTTAGTTTATA+TGG | - | chr2_1:12503493-12503512 | Msa0195640:intron | 30.0% | |
| !! | TAGAAGCATTCAAAGTTTAC+TGG | - | chr2_1:12503716-12503735 | Msa0195640:intron | 30.0% |
| CAAAGTTTACTGGAGAAAAT+CGG | - | chr2_1:12503726-12503745 | Msa0195640:intron | 30.0% | |
| GACTACTGAATTTCAGAAAA+TGG | - | chr2_1:12504001-12504020 | Msa0195640:intron | 30.0% | |
| CAAGTATTAAGATATGAGCA+CGG | - | chr2_1:12504034-12504053 | Msa0195640:intron | 30.0% | |
| TCAGCAAAGTAATCATAATG+TGG | + | chr2_1:12504073-12504092 | None:intergenic | 30.0% | |
| GATAAAGTTAATATAGCTCG+GGG | - | chr2_1:12504091-12504110 | Msa0195640:CDS | 30.0% | |
| ACAGAAAATTGCAGTGAATA+AGG | + | chr2_1:12504335-12504354 | None:intergenic | 30.0% | |
| TAGTCAAAATATTTGAGCAC+GGG | + | chr2_1:12504559-12504578 | None:intergenic | 30.0% | |
| !!! | AACACTACTCATCTTTTTTG+AGG | - | chr2_1:12504603-12504622 | Msa0195640:intron | 30.0% |
| !!! | ACACTACTCATCTTTTTTGA+GGG | - | chr2_1:12504604-12504623 | Msa0195640:intron | 30.0% |
| ATCAAAGTTAGCTACAAGAA+GGG | + | chr2_1:12504726-12504745 | None:intergenic | 30.0% | |
| TATCAAAGTTAGCTACAAGA+AGG | + | chr2_1:12504727-12504746 | None:intergenic | 30.0% | |
| ! | ATCTTTTTAACGCTAGTTAC+AGG | - | chr2_1:12504746-12504765 | Msa0195640:intron | 30.0% |
| GTTTCAGACAATTTATGATG+TGG | + | chr2_1:12504777-12504796 | None:intergenic | 30.0% | |
| CACTAAGAATCCTGAATATA+TGG | - | chr2_1:12505173-12505192 | Msa0195640:intron | 30.0% | |
| AAGAATCCTGAATATATGGT+TGG | - | chr2_1:12505177-12505196 | Msa0195640:intron | 30.0% | |
| ! | AAGTCATGTTAGAAGTGTAA+TGG | - | chr2_1:12505237-12505256 | Msa0195640:intron | 30.0% |
| !!! | TAAGAGGTACATTTTTGAGT+TGG | - | chr2_1:12505428-12505447 | Msa0195640:CDS | 30.0% |
| !!! | AAGAGGTACATTTTTGAGTT+GGG | - | chr2_1:12505429-12505448 | Msa0195640:CDS | 30.0% |
| ! | GAAACTTGTTTGACCTTAGT+AGG | + | chr2_1:12501358-12501377 | None:intergenic | 35.0% |
| CTAAGGTCAAACAAGTTTCA+TGG | - | chr2_1:12501359-12501378 | Msa0195640:three_prime_UTR | 35.0% | |
| AACAAGTTTCATGGAAACCA+AGG | - | chr2_1:12501368-12501387 | Msa0195640:three_prime_UTR | 35.0% | |
| AAATAGAGAGAAAGAGACCT+TGG | + | chr2_1:12501388-12501407 | None:intergenic | 35.0% | |
| TTCACTCAATTTACTCTCAC+CGG | + | chr2_1:12501609-12501628 | None:intergenic | 35.0% | |
| ! | TTCATCTCTAAGAACAAGGT+TGG | - | chr2_1:12501650-12501669 | Msa0195640:CDS | 35.0% |
| GTACACACCAAACACTAATT+TGG | + | chr2_1:12501776-12501795 | None:intergenic | 35.0% | |
| TTCAGTGTAATTACACGTGT+CGG | - | chr2_1:12501957-12501976 | Msa0195640:intron | 35.0% | |
| TCTCGTAAGTACAACTTAGA+TGG | - | chr2_1:12502050-12502069 | Msa0195640:intron | 35.0% | |
| TGCATAACCGTATGATATGT+TGG | - | chr2_1:12502077-12502096 | Msa0195640:intron | 35.0% | |
| GCATAACCGTATGATATGTT+GGG | - | chr2_1:12502078-12502097 | Msa0195640:intron | 35.0% | |
| ! | AAAACTCAGTGTTGAGAACT+GGG | + | chr2_1:12502127-12502146 | None:intergenic | 35.0% |
| ATTACATATGCTTCGTGTTC+TGG | - | chr2_1:12502215-12502234 | Msa0195640:intron | 35.0% | |
| TTACATATGCTTCGTGTTCT+GGG | - | chr2_1:12502216-12502235 | Msa0195640:intron | 35.0% | |
| AAAGGAAAAGACAAGAGCTT+GGG | + | chr2_1:12502305-12502324 | None:intergenic | 35.0% | |
| AAAAGGAAAAGACAAGAGCT+TGG | + | chr2_1:12502306-12502325 | None:intergenic | 35.0% | |
| AACAGTGCTCTTTGACAAAA+AGG | + | chr2_1:12502323-12502342 | None:intergenic | 35.0% | |
| GGAATGTTTGGGAGAATATT+TGG | - | chr2_1:12502373-12502392 | Msa0195640:intron | 35.0% | |
| ! | TGAGTTGTCTGAATTTTGGA+CGG | - | chr2_1:12502407-12502426 | Msa0195640:intron | 35.0% |
| ! | AATCTCCCGCAGTTTTTATA+CGG | + | chr2_1:12502433-12502452 | None:intergenic | 35.0% |
| ! | AAAAACTGCGGGAGATTTTT+CGG | - | chr2_1:12502436-12502455 | Msa0195640:intron | 35.0% |
| TTATAGGATGCCATTGTTTC+TGG | - | chr2_1:12502556-12502575 | Msa0195640:CDS | 35.0% | |
| CGTACTTACCAAAATAGCAA+GGG | + | chr2_1:12502859-12502878 | None:intergenic | 35.0% | |
| !!! | CCTTGCTATTTTGGTAAGTA+CGG | - | chr2_1:12502857-12502876 | Msa0195640:intron | 35.0% |
| CAGATGGAATAGATAGATTG+GGG | + | chr2_1:12503070-12503089 | None:intergenic | 35.0% | |
| TAAGTCTGATTCTGCATATC+AGG | - | chr2_1:12503119-12503138 | Msa0195640:intron | 35.0% | |
| !!! | AGTTCATAGGGGCATTTTAT+TGG | + | chr2_1:12503219-12503238 | None:intergenic | 35.0% |
| CGACATTGAGATATACAGAT+TGG | + | chr2_1:12503476-12503495 | None:intergenic | 35.0% | |
| TAGCCAATCAAATGCTTGAT+GGG | + | chr2_1:12503569-12503588 | None:intergenic | 35.0% | |
| ! | CTATAATATCCTGGTGGATA+AGG | + | chr2_1:12503670-12503689 | None:intergenic | 35.0% |
| TGGAGAAAATCGGAAATAGA+GGG | - | chr2_1:12503736-12503755 | Msa0195640:intron | 35.0% | |
| ! | TGTTTTATGTATTGGGCAAG+GGG | + | chr2_1:12503932-12503951 | None:intergenic | 35.0% |
| ! | CTGTTTTATGTATTGGGCAA+GGG | + | chr2_1:12503933-12503952 | None:intergenic | 35.0% |
| ! | TCTGTTTTATGTATTGGGCA+AGG | + | chr2_1:12503934-12503953 | None:intergenic | 35.0% |
| TTAGACAAACCTCTGCATTA+GGG | + | chr2_1:12504183-12504202 | None:intergenic | 35.0% | |
| AATCCTCAGACGAGATAATT+TGG | + | chr2_1:12504402-12504421 | None:intergenic | 35.0% | |
| ATCTCTCGTCTTTCTTTAGT+TGG | - | chr2_1:12504445-12504464 | Msa0195640:intron | 35.0% | |
| AGTCAAAATATTTGAGCACG+GGG | + | chr2_1:12504558-12504577 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGAGGGAGATGTTT+AGG | - | chr2_1:12504615-12504634 | Msa0195640:intron | 35.0% |
| CTGAACATCAAGTCACTTAA+TGG | - | chr2_1:12504846-12504865 | Msa0195640:intron | 35.0% | |
| ATTTCTCTCCTTCGATAACA+GGG | + | chr2_1:12505041-12505060 | None:intergenic | 35.0% | |
| GACTCATTTGATAAGACAGT+GGG | - | chr2_1:12505087-12505106 | Msa0195640:CDS | 35.0% | |
| ATTCTTAGTGCATTCTCCAA+GGG | + | chr2_1:12505163-12505182 | None:intergenic | 35.0% | |
| GAAGTTCCAACCATATATTC+AGG | + | chr2_1:12505186-12505205 | None:intergenic | 35.0% | |
| GAATATATGGTTGGAACTTC+AGG | - | chr2_1:12505186-12505205 | Msa0195640:intron | 35.0% | |
| AGTCATCCAAAATCATCACT+TGG | + | chr2_1:12505278-12505297 | None:intergenic | 35.0% | |
| AAATACAAAACGAGGACCAA+CGG | + | chr2_1:12505310-12505329 | None:intergenic | 35.0% | |
| ! | TTCTTCTTCTTTTTCCGTTG+TGG | - | chr2_1:12505334-12505353 | Msa0195640:CDS | 35.0% |
| ! | TCTCATGGTCACATTTTAAG+AGG | - | chr2_1:12505412-12505431 | Msa0195640:CDS | 35.0% |
| ! | TGAGTGTGATTTGTAGGGTT+TGG | - | chr2_1:12501248-12501267 | Msa0195640:three_prime_UTR | 40.0% |
| TGCAAATTCCACTTCGCATT+AGG | - | chr2_1:12501301-12501320 | Msa0195640:three_prime_UTR | 40.0% | |
| !!! | ATTGCCTTTTGATTTGGTGC+AGG | - | chr2_1:12501483-12501502 | Msa0195640:CDS | 40.0% |
| !!! | TTGCCTTTTGATTTGGTGCA+GGG | - | chr2_1:12501484-12501503 | Msa0195640:CDS | 40.0% |
| !! | TGCAGGGCTTTTGTTTACAA+AGG | - | chr2_1:12501500-12501519 | Msa0195640:CDS | 40.0% |
| !!! | CAAAGGTTTTCTGACGGATT+TGG | - | chr2_1:12501517-12501536 | Msa0195640:CDS | 40.0% |
| ATCAGAGCTTAAGAGATCTG+CGG | - | chr2_1:12501568-12501587 | Msa0195640:CDS | 40.0% | |
| AGTGAAGTTAGAACCAGTTC+TGG | - | chr2_1:12501623-12501642 | Msa0195640:CDS | 40.0% | |
| AGAGATGAACATTCCAGAAC+TGG | + | chr2_1:12501639-12501658 | None:intergenic | 40.0% | |
| ! | TCTCTAAGAACAAGGTTGGT+TGG | - | chr2_1:12501654-12501673 | Msa0195640:CDS | 40.0% |
| ! | TAAGAACAAGGTTGGTTGGT+TGG | - | chr2_1:12501658-12501677 | Msa0195640:CDS | 40.0% |
| ! | AAACTCAGTGTTGAGAACTG+GGG | + | chr2_1:12502126-12502145 | None:intergenic | 40.0% |
| ! | CAAAACTCAGTGTTGAGAAC+TGG | + | chr2_1:12502128-12502147 | None:intergenic | 40.0% |
| TGTTGTTCAAAAGAGCCTAG+CGG | + | chr2_1:12502151-12502170 | None:intergenic | 40.0% | |
| !! | TGCCATTGTTTCTGGTATTG+AGG | - | chr2_1:12502564-12502583 | Msa0195640:CDS | 40.0% |
| GTCCTCAATACCAGAAACAA+TGG | + | chr2_1:12502569-12502588 | None:intergenic | 40.0% | |
| TCATGGACCTTTCTTCCAAA+AGG | - | chr2_1:12502598-12502617 | Msa0195640:CDS | 40.0% | |
| GACCTTTCTTCCAAAAGGTA+TGG | - | chr2_1:12502603-12502622 | Msa0195640:CDS | 40.0% | |
| !! | TGCCATACCTTTTGGAAGAA+AGG | + | chr2_1:12502608-12502627 | None:intergenic | 40.0% |
| CCGTACTTACCAAAATAGCA+AGG | + | chr2_1:12502860-12502879 | None:intergenic | 40.0% | |
| GTAGCCAATCAAATGCTTGA+TGG | + | chr2_1:12503570-12503589 | None:intergenic | 40.0% | |
| GAGTCACTATAATATCCTGG+TGG | + | chr2_1:12503676-12503695 | None:intergenic | 40.0% | |
| TGGGAGTCACTATAATATCC+TGG | + | chr2_1:12503679-12503698 | None:intergenic | 40.0% | |
| CTGGAGAAAATCGGAAATAG+AGG | - | chr2_1:12503735-12503754 | Msa0195640:intron | 40.0% | |
| AAAGTTAATATAGCTCGGGG+TGG | - | chr2_1:12504094-12504113 | Msa0195640:CDS | 40.0% | |
| TATCTCACCAATGTGACCAA+AGG | - | chr2_1:12504142-12504161 | Msa0195640:intron | 40.0% | |
| CTTAGACAAACCTCTGCATT+AGG | + | chr2_1:12504184-12504203 | None:intergenic | 40.0% | |
| TTGCAGTGAATAAGGATCCA+AGG | + | chr2_1:12504327-12504346 | None:intergenic | 40.0% | |
| CCAAGAAACTCCCAACTATT+TGG | + | chr2_1:12504674-12504693 | None:intergenic | 40.0% | |
| CCAAATAGTTGGGAGTTTCT+TGG | - | chr2_1:12504671-12504690 | Msa0195640:intron | 40.0% | |
| CTCTCTGAGTGTGGAAAAAA+AGG | - | chr2_1:12504807-12504826 | Msa0195640:intron | 40.0% | |
| TGTGGAAAAAAAGGAGTTGC+AGG | - | chr2_1:12504816-12504835 | Msa0195640:intron | 40.0% | |
| GAAAAAAAGGAGTTGCAGGT+GGG | - | chr2_1:12504820-12504839 | Msa0195640:intron | 40.0% | |
| CATTTCTCTCCTTCGATAAC+AGG | + | chr2_1:12505042-12505061 | None:intergenic | 40.0% | |
| CTGTTATCGAAGGAGAGAAA+TGG | - | chr2_1:12505040-12505059 | Msa0195640:CDS | 40.0% | |
| AGAAATGGTCAGCAACGAAA+TGG | - | chr2_1:12505055-12505074 | Msa0195640:CDS | 40.0% | |
| GAAATGGTCAGCAACGAAAT+GGG | - | chr2_1:12505056-12505075 | Msa0195640:CDS | 40.0% | |
| GGACTCATTTGATAAGACAG+TGG | - | chr2_1:12505086-12505105 | Msa0195640:CDS | 40.0% | |
| AGCATGAAAGCTGTGAAAGA+TGG | - | chr2_1:12505133-12505152 | Msa0195640:CDS | 40.0% | |
| GCATGAAAGCTGTGAAAGAT+GGG | - | chr2_1:12505134-12505153 | Msa0195640:CDS | 40.0% | |
| GATTCTTAGTGCATTCTCCA+AGG | + | chr2_1:12505164-12505183 | None:intergenic | 40.0% | |
| CAAAATCATCACTTGGAGTC+TGG | + | chr2_1:12505271-12505290 | None:intergenic | 40.0% | |
| ! | CAGACTCCAAGTGATGATTT+TGG | - | chr2_1:12505269-12505288 | Msa0195640:intron | 40.0% |
| ! | GATGACTTTCCATTTTCCGT+TGG | - | chr2_1:12505291-12505310 | Msa0195640:intron | 40.0% |
| ! | CTGATAGTGTTCTAGTCTCA+TGG | - | chr2_1:12505397-12505416 | Msa0195640:CDS | 40.0% |
| AGTTGGGAAGCTGTAATTGT+AGG | - | chr2_1:12505445-12505464 | Msa0195640:exon | 40.0% | |
| AAACTCGAATCGGAGAACTA+AGG | + | chr2_1:12505549-12505568 | None:intergenic | 40.0% | |
| TGCGATCATCGATCCTACTA+AGG | - | chr2_1:12501342-12501361 | Msa0195640:three_prime_UTR | 45.0% | |
| AAGCCCTGCACCAAATCAAA+AGG | + | chr2_1:12501490-12501509 | None:intergenic | 45.0% | |
| !! | AGTGTTTGGTGTGTACTGTG+TGG | - | chr2_1:12501780-12501799 | Msa0195640:intron | 45.0% |
| !! | GTGTTTGGTGTGTACTGTGT+GGG | - | chr2_1:12501781-12501800 | Msa0195640:intron | 45.0% |
| !! | TGTTTGGTGTGTACTGTGTG+GGG | - | chr2_1:12501782-12501801 | Msa0195640:intron | 45.0% |
| GATCAGCACACTATGAAGCA+CGG | - | chr2_1:12501865-12501884 | Msa0195640:CDS | 45.0% | |
| CACACTATGAAGCACGGATA+CGG | - | chr2_1:12501871-12501890 | Msa0195640:CDS | 45.0% | |
| ACACAACATGTGTCCAACAC+CGG | - | chr2_1:12501980-12501999 | Msa0195640:intron | 45.0% | |
| CTGCGTCCCAACATATCATA+CGG | + | chr2_1:12502087-12502106 | None:intergenic | 45.0% | |
| GTTGAGAACTGGGGAATTAC+TGG | + | chr2_1:12502117-12502136 | None:intergenic | 45.0% | |
| ! | TTCTAGCAAAGGGCACAAAC+AGG | - | chr2_1:12502902-12502921 | Msa0195640:intron | 45.0% |
| GGTCCCATCAAGCATTTGAT+TGG | - | chr2_1:12503563-12503582 | Msa0195640:intron | 45.0% | |
| TTATGTATTGGGCAAGGGGA+GGG | + | chr2_1:12503928-12503947 | None:intergenic | 45.0% | |
| TTTATGTATTGGGCAAGGGG+AGG | + | chr2_1:12503929-12503948 | None:intergenic | 45.0% | |
| GGTGAGATACATGAGAACAG+TGG | + | chr2_1:12504131-12504150 | None:intergenic | 45.0% | |
| TTCACCACCTTTGGTCACAT+TGG | + | chr2_1:12504152-12504171 | None:intergenic | 45.0% | |
| GAACACTGTTTCACCACCTT+TGG | + | chr2_1:12504161-12504180 | None:intergenic | 45.0% | |
| AACAGTGTTCCCTAATGCAG+AGG | - | chr2_1:12504171-12504190 | Msa0195640:intron | 45.0% | |
| CATCTCCTTATACAGCCTTG+AGG | - | chr2_1:12504288-12504307 | Msa0195640:intron | 45.0% | |
| AGAGACCTCAAGGCTGTATA+AGG | + | chr2_1:12504296-12504315 | None:intergenic | 45.0% | |
| GAGCCAAATTATCTCGTCTG+AGG | - | chr2_1:12504396-12504415 | Msa0195640:intron | 45.0% | |
| TATTTGAGCACGGGGAAAAG+TGG | + | chr2_1:12504550-12504569 | None:intergenic | 45.0% | |
| TAGTTGGGAGTTTCTTGGCA+AGG | - | chr2_1:12504676-12504695 | Msa0195640:intron | 45.0% | |
| AGTTGGGAGTTTCTTGGCAA+GGG | - | chr2_1:12504677-12504696 | Msa0195640:intron | 45.0% | |
| GATGAAGATCTCTCTGAGTG+TGG | - | chr2_1:12504798-12504817 | Msa0195640:intron | 45.0% | |
| GGAAAAAAAGGAGTTGCAGG+TGG | - | chr2_1:12504819-12504838 | Msa0195640:intron | 45.0% | |
| ! | TTTTTCTTTCCTTCCTCCCC+CGG | - | chr2_1:12504919-12504938 | Msa0195640:intron | 45.0% |
| AGGTTTCACTGCGAATTGTC+CGG | + | chr2_1:12504941-12504960 | None:intergenic | 45.0% | |
| AATTCGCAGTGAAACCTCGA+AGG | - | chr2_1:12504944-12504963 | Msa0195640:intron | 45.0% | |
| ATTCGCAGTGAAACCTCGAA+GGG | - | chr2_1:12504945-12504964 | Msa0195640:intron | 45.0% | |
| ! | GAGTGTCTGGGATAGCATTT+GGG | + | chr2_1:12504999-12505018 | None:intergenic | 45.0% |
| ! | AGAGTGTCTGGGATAGCATT+TGG | + | chr2_1:12505000-12505019 | None:intergenic | 45.0% |
| !! | CATGAAGACTGAGAGTGTCT+GGG | + | chr2_1:12505011-12505030 | None:intergenic | 45.0% |
| TTTGATAAGACAGTGGGAGC+TGG | - | chr2_1:12505093-12505112 | Msa0195640:CDS | 45.0% | |
| ! | CAACTTTTCCTACAGTAGCC+GGG | + | chr2_1:12505216-12505235 | None:intergenic | 45.0% |
| ! | GCAACTTTTCCTACAGTAGC+CGG | + | chr2_1:12505217-12505236 | None:intergenic | 45.0% |
| AAACGAGGACCAACGGAAAA+TGG | + | chr2_1:12505303-12505322 | None:intergenic | 45.0% | |
| !!! | TAAAATTAAAAACATAATTT+TGG | - | chr2_1:12504225-12504244 | Msa0195640:intron | 5.0% |
| !! | AAAAAATTGAAAAATTATAA+AGG | + | chr2_1:12504261-12504280 | None:intergenic | 5.0% |
| !!! | AATTTTTCAATTTTTTTTTT+TGG | - | chr2_1:12504265-12504284 | Msa0195640:intron | 5.0% |
| CGTAGGAACCTAATGCGAAG+TGG | + | chr2_1:12501312-12501331 | None:intergenic | 50.0% | |
| TTCGCATTAGGTTCCTACGC+AGG | - | chr2_1:12501313-12501332 | Msa0195640:three_prime_UTR | 50.0% | |
| AGTAGGATCGATGATCGCAC+TGG | + | chr2_1:12501341-12501360 | None:intergenic | 50.0% | |
| AGAGCTTAAGAGATCTGCGG+TGG | - | chr2_1:12501571-12501590 | Msa0195640:CDS | 50.0% | |
| GTGTGGGGCTATGACTGTAT+AGG | - | chr2_1:12501797-12501816 | Msa0195640:intron | 50.0% | |
| CACAACATGTGTCCAACACC+GGG | - | chr2_1:12501981-12502000 | Msa0195640:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+TGG | + | chr2_1:12502018-12502037 | None:intergenic | 50.0% | |
| !! | GCTGTGCTGACTATGAAGCA+CGG | + | chr2_1:12502029-12502048 | None:intergenic | 50.0% |
| CGTATGATATGTTGGGACGC+AGG | - | chr2_1:12502085-12502104 | Msa0195640:intron | 50.0% | |
| ! | CAACACTGAGTTTTGCCGCT+AGG | - | chr2_1:12502133-12502152 | Msa0195640:intron | 50.0% |
| GGACGGCCGTATAAAAACTG+CGG | - | chr2_1:12502424-12502443 | Msa0195640:intron | 50.0% | |
| GACGGCCGTATAAAAACTGC+GGG | - | chr2_1:12502425-12502444 | Msa0195640:intron | 50.0% | |
| ! | CAAAGGGCACAAACAGGCAT+GGG | - | chr2_1:12502908-12502927 | Msa0195640:intron | 50.0% |
| GGCTACGGTACACATACAGA+TGG | + | chr2_1:12503086-12503105 | None:intergenic | 50.0% | |
| ! | TAGTACACCCTTTTCTCCCC+TGG | - | chr2_1:12503536-12503555 | Msa0195640:intron | 50.0% |
| ! | AGTACACCCTTTTCTCCCCT+GGG | - | chr2_1:12503537-12503556 | Msa0195640:intron | 50.0% |
| ACCATACCCAGGGGAGAAAA+GGG | + | chr2_1:12503546-12503565 | None:intergenic | 50.0% | |
| CTCACCAATGTGACCAAAGG+TGG | - | chr2_1:12504145-12504164 | Msa0195640:intron | 50.0% | |
| GGTAGAGACTAGAGACCTCA+AGG | + | chr2_1:12504306-12504325 | None:intergenic | 50.0% | |
| GAGGTCTCTAGTCTCTACCT+TGG | - | chr2_1:12504307-12504326 | Msa0195640:intron | 50.0% | |
| TTTCACTGCGAATTGTCCGG+GGG | + | chr2_1:12504938-12504957 | None:intergenic | 50.0% | |
| GTTTCACTGCGAATTGTCCG+GGG | + | chr2_1:12504939-12504958 | None:intergenic | 50.0% | |
| GGTTTCACTGCGAATTGTCC+GGG | + | chr2_1:12504940-12504959 | None:intergenic | 50.0% | |
| TTCGCAGTGAAACCTCGAAG+GGG | - | chr2_1:12504946-12504965 | Msa0195640:intron | 50.0% | |
| ! | TGTCTGGGATAGCATTTGGG+TGG | + | chr2_1:12504996-12505015 | None:intergenic | 50.0% |
| !! | GCATGAAGACTGAGAGTGTC+TGG | + | chr2_1:12505012-12505031 | None:intergenic | 50.0% |
| GACACTCTCAGTCTTCATGC+AGG | - | chr2_1:12505012-12505031 | Msa0195640:intron | 50.0% | |
| ! | AGCAACGAAATGGGTTCACG+TGG | - | chr2_1:12505065-12505084 | Msa0195640:CDS | 50.0% |
| ATAAGACAGTGGGAGCTGGA+GGG | - | chr2_1:12505097-12505116 | Msa0195640:CDS | 50.0% | |
| ! | TTTTCCTACAGTAGCCGGGA+AGG | + | chr2_1:12505212-12505231 | None:intergenic | 50.0% |
| GCTTAAGAGATCTGCGGTGG+CGG | - | chr2_1:12501574-12501593 | Msa0195640:CDS | 55.0% | |
| !! | GCGGTGGCGGATAATTTGTC+CGG | - | chr2_1:12501587-12501606 | Msa0195640:CDS | 55.0% |
| GTCAGTGTCTGTGTCGTGTC+TGG | + | chr2_1:12501900-12501919 | None:intergenic | 55.0% | |
| ! | TCCTTGGATTAGGCCTGTCC+CGG | + | chr2_1:12502002-12502021 | None:intergenic | 55.0% |
| GCACGGACACTCCTTGGATT+AGG | + | chr2_1:12502012-12502031 | None:intergenic | 55.0% | |
| !!! | GCGCTCGACCCTTGCTATTT+TGG | - | chr2_1:12502848-12502867 | Msa0195640:intron | 55.0% |
| ! | GCAAAGGGCACAAACAGGCA+TGG | - | chr2_1:12502907-12502926 | Msa0195640:intron | 55.0% |
| ! | ACCCTTTTCTCCCCTGGGTA+TGG | - | chr2_1:12503542-12503561 | Msa0195640:intron | 55.0% |
| GACCATACCCAGGGGAGAAA+AGG | + | chr2_1:12503547-12503566 | None:intergenic | 55.0% | |
| CTTGATGGGACCATACCCAG+GGG | + | chr2_1:12503555-12503574 | None:intergenic | 55.0% | |
| GCTTGATGGGACCATACCCA+GGG | + | chr2_1:12503556-12503575 | None:intergenic | 55.0% | |
| TGCTTGATGGGACCATACCC+AGG | + | chr2_1:12503557-12503576 | None:intergenic | 55.0% | |
| ! | CCTGGTGGATAAGGTGCTTC+TGG | + | chr2_1:12503661-12503680 | None:intergenic | 55.0% |
| !! | CCAGAAGCACCTTATCCACC+AGG | - | chr2_1:12503658-12503677 | Msa0195640:intron | 55.0% |
| ATATAGCTCGGGGTGGACAC+CGG | - | chr2_1:12504101-12504120 | Msa0195640:CDS | 55.0% | |
| ACATGAGAACAGTGGCGACC+CGG | + | chr2_1:12504123-12504142 | None:intergenic | 55.0% | |
| ! | AGAAGTGCATCTCCCCTTCG+AGG | + | chr2_1:12504961-12504980 | None:intergenic | 55.0% |
| GCAGGATGCCCTGTTATCGA+AGG | - | chr2_1:12505030-12505049 | Msa0195640:CDS | 55.0% | |
| GATAAGACAGTGGGAGCTGG+AGG | - | chr2_1:12505096-12505115 | Msa0195640:CDS | 55.0% | |
| TAAGACAGTGGGAGCTGGAG+GGG | - | chr2_1:12505098-12505117 | Msa0195640:CDS | 55.0% | |
| !! | TGTGAAAGATGGGCTGCCCT+TGG | - | chr2_1:12505144-12505163 | Msa0195640:CDS | 55.0% |
| GTTGGAACTTCAGGCCTTCC+CGG | - | chr2_1:12505195-12505214 | Msa0195640:intron | 55.0% | |
| CATGTGTCCAACACCGGGAC+AGG | - | chr2_1:12501986-12502005 | Msa0195640:intron | 60.0% | |
| GATTAGGCCTGTCCCGGTGT+TGG | + | chr2_1:12501996-12502015 | None:intergenic | 60.0% | |
| ACCGGGACAGGCCTAATCCA+AGG | - | chr2_1:12501998-12502017 | Msa0195640:intron | 60.0% | |
| TGTATTGGGCAAGGGGAGGG+TGG | + | chr2_1:12503925-12503944 | None:intergenic | 60.0% | |
| TATAGCTCGGGGTGGACACC+GGG | - | chr2_1:12504102-12504121 | Msa0195640:CDS | 60.0% | |
| ! | GATCGCACTGGTGCCTGCGT+AGG | + | chr2_1:12501329-12501348 | None:intergenic | 65.0% |
| GCGAATTGTCCGGGGGAGGA+AGG | + | chr2_1:12504931-12504950 | None:intergenic | 65.0% | |
| CACTGCGAATTGTCCGGGGG+AGG | + | chr2_1:12504935-12504954 | None:intergenic | 65.0% | |
| CAGGCCTTCCCGGCTACTGT+AGG | - | chr2_1:12505205-12505224 | Msa0195640:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 12501092 | 12505604 | 12501092 | ID=Msa0195640;Name=Msa0195640 |
| chr2_1 | mRNA | 12501092 | 12505604 | 12501092 | ID=Msa0195640-mRNA-1;Parent=Msa0195640;Name=Msa0195640-mRNA-1;_AED=0.09;_eAED=0.09;_QI=155|1|1|1|1|1|6|356|303 |
| chr2_1 | exon | 12501092 | 12501743 | 12501092 | ID=Msa0195640-mRNA-1:exon:5488;Parent=Msa0195640-mRNA-1 |
| chr2_1 | exon | 12501859 | 12501934 | 12501859 | ID=Msa0195640-mRNA-1:exon:5487;Parent=Msa0195640-mRNA-1 |
| chr2_1 | exon | 12502504 | 12502679 | 12502504 | ID=Msa0195640-mRNA-1:exon:5486;Parent=Msa0195640-mRNA-1 |
| chr2_1 | exon | 12504077 | 12504134 | 12504077 | ID=Msa0195640-mRNA-1:exon:5485;Parent=Msa0195640-mRNA-1 |
| chr2_1 | exon | 12505029 | 12505191 | 12505029 | ID=Msa0195640-mRNA-1:exon:5484;Parent=Msa0195640-mRNA-1 |
| chr2_1 | exon | 12505307 | 12505604 | 12505307 | ID=Msa0195640-mRNA-1:exon:5483;Parent=Msa0195640-mRNA-1 |
| chr2_1 | five_prime_UTR | 12505450 | 12505604 | 12505450 | ID=Msa0195640-mRNA-1:five_prime_utr;Parent=Msa0195640-mRNA-1 |
| chr2_1 | CDS | 12505307 | 12505449 | 12505307 | ID=Msa0195640-mRNA-1:cds;Parent=Msa0195640-mRNA-1 |
| chr2_1 | CDS | 12505029 | 12505191 | 12505029 | ID=Msa0195640-mRNA-1:cds;Parent=Msa0195640-mRNA-1 |
| chr2_1 | CDS | 12504077 | 12504134 | 12504077 | ID=Msa0195640-mRNA-1:cds;Parent=Msa0195640-mRNA-1 |
| chr2_1 | CDS | 12502504 | 12502679 | 12502504 | ID=Msa0195640-mRNA-1:cds;Parent=Msa0195640-mRNA-1 |
| chr2_1 | CDS | 12501859 | 12501934 | 12501859 | ID=Msa0195640-mRNA-1:cds;Parent=Msa0195640-mRNA-1 |
| chr2_1 | CDS | 12501448 | 12501743 | 12501448 | ID=Msa0195640-mRNA-1:cds;Parent=Msa0195640-mRNA-1 |
| chr2_1 | three_prime_UTR | 12501092 | 12501447 | 12501092 | ID=Msa0195640-mRNA-1:three_prime_utr;Parent=Msa0195640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
