Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034810 | XP_003625175.1 | 93.651 | 252 | 14 | 2 | 1 | 251 | 1 | 251 | 1.29e-159 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034810 | G7KTL5 | 93.651 | 252 | 14 | 2 | 1 | 251 | 1 | 251 | 6.14e-160 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048510 | Msa1034810 | 0.802774 | 4.783098e-49 | -8.615850e-47 |
| Msa0735780 | Msa1034810 | 0.810516 | 1.108784e-50 | -8.615850e-47 |
| Msa0740710 | Msa1034810 | 0.800012 | 1.759392e-48 | -8.615850e-47 |
| Msa0758650 | Msa1034810 | 0.803122 | 4.053301e-49 | -8.615850e-47 |
| Msa0213030 | Msa1034810 | 0.806133 | 9.538165e-50 | -8.615850e-47 |
| Msa1034810 | Msa1115710 | 0.890275 | 1.141714e-73 | -8.615850e-47 |
| Msa1034810 | Msa1162180 | 0.859028 | 5.491219e-63 | -8.615850e-47 |
| Msa1034810 | Msa1214350 | 0.806090 | 9.740544e-50 | -8.615850e-47 |
| Msa1034810 | Msa1343170 | 0.803316 | 3.694875e-49 | -8.615850e-47 |
| Msa0298470 | Msa1034810 | 0.811102 | 8.278755e-51 | -8.615850e-47 |
| Msa0337480 | Msa1034810 | 0.839505 | 1.522004e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034810 | MtrunA17_Chr7g0257991 | 93.651 | 252 | 14 | 2 | 1 | 251 | 1 | 251 | 1.18e-163 | 452 |
| Msa1034810 | MtrunA17_Chr3g0088311 | 36.321 | 212 | 109 | 6 | 1 | 208 | 1 | 190 | 1.85e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1034810 | AT3G52110.4 | 35.294 | 255 | 116 | 12 | 1 | 247 | 1 | 214 | 2.42e-29 | 111 |
| Msa1034810 | AT3G52110.3 | 35.294 | 255 | 116 | 12 | 1 | 247 | 1 | 214 | 1.02e-28 | 111 |
| Msa1034810 | AT3G52110.2 | 35.294 | 255 | 116 | 12 | 1 | 247 | 1 | 214 | 1.13e-28 | 111 |
| Msa1034810 | AT3G52110.1 | 35.294 | 255 | 116 | 12 | 1 | 247 | 1 | 214 | 1.91e-28 | 111 |
Find 74 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAATTCTTCCATTTA+AGG | 0.041761 | 7_1:-70463744 | Msa1034810:CDS |
| GATCTTCTATTACTTCTTTC+AGG | 0.129146 | 7_1:+70463176 | None:intergenic |
| AAACTTTACTGTAACAAATT+TGG | 0.131238 | 7_1:-70463297 | Msa1034810:CDS |
| AAGTGAGAGAAGGTGTTAAA+TGG | 0.204073 | 7_1:-70462697 | Msa1034810:three_prime_UTR |
| CTTGAACAATTGGGTCTTCT+AGG | 0.208167 | 7_1:+70463353 | None:intergenic |
| CTTCGATTTCTATCCTTAAA+TGG | 0.242020 | 7_1:+70463731 | None:intergenic |
| TGATTCCGTTAAAGTGAATT+TGG | 0.250039 | 7_1:-70462818 | Msa1034810:three_prime_UTR |
| AAATGAGCATTGTCGAAGTT+TGG | 0.260206 | 7_1:-70462642 | None:intergenic |
| ATCCATGTTTCTTGAACAAT+TGG | 0.261018 | 7_1:+70463343 | None:intergenic |
| TTAAAGTGAATTTGGTTAAC+AGG | 0.271543 | 7_1:-70462810 | Msa1034810:three_prime_UTR |
| GTTAACCAAATTCACTTTAA+CGG | 0.305486 | 7_1:+70462813 | None:intergenic |
| GGAAAATCCTTCAGCTGTTA+AGG | 0.334128 | 7_1:-70463387 | Msa1034810:CDS |
| AAATTTGTTACAGTAAAGTT+TGG | 0.339133 | 7_1:+70463299 | None:intergenic |
| GCAGGCAAAGTTATTAAGAT+TGG | 0.355508 | 7_1:-70463774 | Msa1034810:intron |
| AGAATTGAAGGAAAAGAGTA+AGG | 0.363655 | 7_1:-70462988 | Msa1034810:CDS |
| AATGAGCATTGTCGAAGTTT+GGG | 0.382777 | 7_1:-70462641 | None:intergenic |
| CAACGGCTTCTTTAGGTTGT+TGG | 0.382877 | 7_1:+70463265 | None:intergenic |
| ACCTCAACAACGGCTTCTTT+AGG | 0.384314 | 7_1:+70463258 | None:intergenic |
| CTCAAAATTTATTGGGTGGC+AGG | 0.386361 | 7_1:-70463130 | Msa1034810:CDS |
| TGAGGTAGTAACCTTGGAAT+TGG | 0.388500 | 7_1:+70463901 | None:intergenic |
| AGCAGAGAGATCAACCCATT+TGG | 0.390275 | 7_1:+70464114 | None:intergenic |
| TGGAACCAGAAAACATTGAT+TGG | 0.393800 | 7_1:-70464192 | Msa1034810:CDS |
| TTGGTCGTGGTTGTAGTTGT+GGG | 0.420054 | 7_1:+70463920 | None:intergenic |
| ATCATCAACAAGAGGCTCAT+TGG | 0.420743 | 7_1:+70464087 | None:intergenic |
| AGTGAGAGAAGGTGTTAAAT+GGG | 0.431743 | 7_1:-70462696 | Msa1034810:three_prime_UTR |
| GCAGAGAGATCAACCCATTT+GGG | 0.436277 | 7_1:+70464115 | None:intergenic |
| AGAACTTCGACGCGCCCAAA+TGG | 0.439641 | 7_1:-70464129 | Msa1034810:CDS |
| AGTTGCATATAAGAGAGTTC+TGG | 0.450555 | 7_1:-70462751 | Msa1034810:three_prime_UTR |
| GAGAAGGGCTCAAATTCAAA+TGG | 0.468513 | 7_1:-70463020 | Msa1034810:CDS |
| ATTGGTCGTGGTTGTAGTTG+TGG | 0.472270 | 7_1:+70463919 | None:intergenic |
| CTGTAACAAATTTGGATGGT+GGG | 0.481657 | 7_1:-70463289 | Msa1034810:CDS |
| TGGAAGAATTTCAGAAAAGC+TGG | 0.482092 | 7_1:+70463751 | None:intergenic |
| TGGAGTGTTAGAAGAATTGA+AGG | 0.486427 | 7_1:-70463000 | Msa1034810:CDS |
| CCCTTGCTTGTTGTCAAGGA+AGG | 0.489257 | 7_1:-70462948 | Msa1034810:CDS |
| TCCATGTTTCTTGAACAATT+GGG | 0.492758 | 7_1:+70463344 | None:intergenic |
| GGTACCCTTGCTTGTTGTCA+AGG | 0.495287 | 7_1:-70462952 | Msa1034810:CDS |
| CAACAACAAATTCGACCGTT+GGG | 0.501318 | 7_1:+70464448 | None:intergenic |
| AGGAAGGGTTCTACTAAGAA+AGG | 0.503091 | 7_1:-70463053 | Msa1034810:CDS |
| GAACTTCGACGCGCCCAAAT+GGG | 0.504380 | 7_1:-70464128 | Msa1034810:CDS |
| ACAACAACAAATTCGACCGT+TGG | 0.505583 | 7_1:+70464447 | None:intergenic |
| TCACAATCCTTAACAGCTGA+AGG | 0.510472 | 7_1:+70463380 | None:intergenic |
| AGAGTAAGGGACGCAAAGAA+AGG | 0.522658 | 7_1:-70462974 | Msa1034810:CDS |
| GAAATTCTGAGTCAAATCAC+AGG | 0.527180 | 7_1:-70463107 | Msa1034810:CDS |
| GGAACCAGAAAACATTGATT+GGG | 0.532486 | 7_1:-70464191 | Msa1034810:CDS |
| TCAAAATTTATTGGGTGGCA+GGG | 0.533924 | 7_1:-70463129 | Msa1034810:CDS |
| TTTACTGTAACAAATTTGGA+TGG | 0.540080 | 7_1:-70463293 | Msa1034810:CDS |
| ACTGTAACAAATTTGGATGG+TGG | 0.552283 | 7_1:-70463290 | Msa1034810:CDS |
| AAATAATGTCTCATTACTCA+AGG | 0.553989 | 7_1:+70462921 | None:intergenic |
| GAGTAAGGGACGCAAAGAAA+GGG | 0.559077 | 7_1:-70462973 | Msa1034810:CDS |
| AGTAACCTTGGAATTGGTCG+TGG | 0.559793 | 7_1:+70463907 | None:intergenic |
| GAATTGAAGGAAAAGAGTAA+GGG | 0.560426 | 7_1:-70462987 | Msa1034810:CDS |
| CCCTTCCTTGACAACAAGCA+AGG | 0.563680 | 7_1:+70462947 | None:intergenic |
| GTAAGTATCATCATGAATGA+AGG | 0.565055 | 7_1:+70464153 | None:intergenic |
| ACCCAATTGTTCAAGAAACA+TGG | 0.569834 | 7_1:-70463345 | Msa1034810:CDS |
| ATCAACAAGAGGCTCATTGG+AGG | 0.575042 | 7_1:+70464090 | None:intergenic |
| GGTCTAGAACAATTTAGACT+AGG | 0.580913 | 7_1:-70462730 | Msa1034810:three_prime_UTR |
| CCTTGCTTGTTGTCAAGGAA+GGG | 0.590167 | 7_1:-70462947 | Msa1034810:CDS |
| GAAGAGGCTAGCAACAAGGA+AGG | 0.590240 | 7_1:-70463069 | Msa1034810:CDS |
| TACAACCACGACCAATTCCA+AGG | 0.592894 | 7_1:-70463912 | Msa1034810:intron |
| AGGGTTCTACTAAGAAAGGA+GGG | 0.601335 | 7_1:-70463049 | Msa1034810:CDS |
| GGGTTCTACTAAGAAAGGAG+GGG | 0.602916 | 7_1:-70463048 | Msa1034810:CDS |
| AGTATCATCATGAATGAAGG+TGG | 0.603485 | 7_1:+70464156 | None:intergenic |
| TCAGCTCAAAATTTATTGGG+TGG | 0.604858 | 7_1:-70463134 | Msa1034810:CDS |
| GGTTCTACTAAGAAAGGAGG+GGG | 0.607034 | 7_1:-70463047 | Msa1034810:CDS |
| CTTCTATTACTTCTTTCAGG+AGG | 0.613198 | 7_1:+70463179 | None:intergenic |
| AAGAGGCTAGCAACAAGGAA+GGG | 0.620914 | 7_1:-70463068 | Msa1034810:CDS |
| AATTGAAGAGGCTAGCAACA+AGG | 0.623685 | 7_1:-70463073 | Msa1034810:CDS |
| ACCTAAAGAAGCCGTTGTTG+AGG | 0.627199 | 7_1:-70463259 | Msa1034810:CDS |
| TTTGACTTTGACCTCAACAA+CGG | 0.631431 | 7_1:+70463248 | None:intergenic |
| CCTTCCTTGACAACAAGCAA+GGG | 0.639988 | 7_1:+70462948 | None:intergenic |
| AAGGGTTCTACTAAGAAAGG+AGG | 0.646202 | 7_1:-70463050 | Msa1034810:CDS |
| CATTTAAGGATAGAAATCGA+AGG | 0.656115 | 7_1:-70463730 | Msa1034810:intron |
| AAATTCTGAGTCAAATCACA+GGG | 0.661167 | 7_1:-70463106 | Msa1034810:CDS |
| GTTCTACTAAGAAAGGAGGG+GGG | 0.794134 | 7_1:-70463046 | Msa1034810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGCATAATTTTTAGTTTT+TGG | + | chr7_1:70463262-70463281 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATAGATTTGATT+TGG | + | chr7_1:70463387-70463406 | None:intergenic | 15.0% |
| !!! | GTATCATATTAGTAATTTTA+TGG | + | chr7_1:70463538-70463557 | None:intergenic | 15.0% |
| !! | TATTATGTTGTATATGTATT+AGG | - | chr7_1:70463680-70463699 | Msa1034810:intron | 15.0% |
| !! | ATTATGTTGTATATGTATTA+GGG | - | chr7_1:70463681-70463700 | Msa1034810:intron | 15.0% |
| !!! | TTTATTTTTTTGACAAGAAA+CGG | - | chr7_1:70464222-70464241 | Msa1034810:intron | 15.0% |
| !!! | ATTGCATAATTTTTAGTTTT+TGG | + | chr7_1:70463262-70463281 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATAGATTTGATT+TGG | + | chr7_1:70463387-70463406 | None:intergenic | 15.0% |
| !!! | GTATCATATTAGTAATTTTA+TGG | + | chr7_1:70463538-70463557 | None:intergenic | 15.0% |
| !! | TATTATGTTGTATATGTATT+AGG | - | chr7_1:70463680-70463699 | Msa1034810:intron | 15.0% |
| !! | ATTATGTTGTATATGTATTA+GGG | - | chr7_1:70463681-70463700 | Msa1034810:intron | 15.0% |
| !!! | TTTATTTTTTTGACAAGAAA+CGG | - | chr7_1:70464222-70464241 | Msa1034810:intron | 15.0% |
| !! | TTCTGTTAATGTAATGATAA+TGG | + | chr7_1:70462812-70462831 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTAACTTTTCAGA+TGG | - | chr7_1:70462877-70462896 | Msa1034810:three_prime_UTR | 20.0% |
| !! | TGAGAAAAAAACAAAAATTG+AGG | + | chr7_1:70463209-70463228 | None:intergenic | 20.0% |
| !!! | TAAAAAGAGTAAAGCTATTT+TGG | - | chr7_1:70463399-70463418 | Msa1034810:intron | 20.0% |
| !!! | TATCTTTGAATGTGTTATTA+TGG | - | chr7_1:70463479-70463498 | Msa1034810:intron | 20.0% |
| !! | TACTAATATGATACATTCAA+AGG | - | chr7_1:70463544-70463563 | Msa1034810:intron | 20.0% |
| !!! | TCTTAGCTTTAGTTTTTTAA+GGG | + | chr7_1:70463635-70463654 | None:intergenic | 20.0% |
| !!! | TTCTTAGCTTTAGTTTTTTA+AGG | + | chr7_1:70463636-70463655 | None:intergenic | 20.0% |
| !!! | AAATTTGTTACAGTAAAGTT+TGG | + | chr7_1:70463793-70463812 | None:intergenic | 20.0% |
| !! | AAACTTTACTGTAACAAATT+TGG | - | chr7_1:70463792-70463811 | Msa1034810:intron | 20.0% |
| !!! | ATTTTCAGCTCAAAATTTAT+TGG | - | chr7_1:70463951-70463970 | Msa1034810:CDS | 20.0% |
| !!! | TTTTCAGCTCAAAATTTATT+GGG | - | chr7_1:70463952-70463971 | Msa1034810:CDS | 20.0% |
| !! | TTCTGTTAATGTAATGATAA+TGG | + | chr7_1:70462812-70462831 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTAACTTTTCAGA+TGG | - | chr7_1:70462877-70462896 | Msa1034810:three_prime_UTR | 20.0% |
| !! | TGAGAAAAAAACAAAAATTG+AGG | + | chr7_1:70463209-70463228 | None:intergenic | 20.0% |
| !!! | TAAAAAGAGTAAAGCTATTT+TGG | - | chr7_1:70463399-70463418 | Msa1034810:intron | 20.0% |
| !!! | TATCTTTGAATGTGTTATTA+TGG | - | chr7_1:70463479-70463498 | Msa1034810:intron | 20.0% |
| !! | TACTAATATGATACATTCAA+AGG | - | chr7_1:70463544-70463563 | Msa1034810:intron | 20.0% |
| !!! | TCTTAGCTTTAGTTTTTTAA+GGG | + | chr7_1:70463635-70463654 | None:intergenic | 20.0% |
| !!! | TTCTTAGCTTTAGTTTTTTA+AGG | + | chr7_1:70463636-70463655 | None:intergenic | 20.0% |
| !!! | AAATTTGTTACAGTAAAGTT+TGG | + | chr7_1:70463793-70463812 | None:intergenic | 20.0% |
| !! | AAACTTTACTGTAACAAATT+TGG | - | chr7_1:70463792-70463811 | Msa1034810:intron | 20.0% |
| !!! | ATTTTCAGCTCAAAATTTAT+TGG | - | chr7_1:70463951-70463970 | Msa1034810:CDS | 20.0% |
| !!! | TTTTCAGCTCAAAATTTATT+GGG | - | chr7_1:70463952-70463971 | Msa1034810:CDS | 20.0% |
| ! | CTGAAAAGTTAAAAAAAGAG+AGG | + | chr7_1:70462876-70462895 | None:intergenic | 25.0% |
| !!! | AGAAGATTTTGAGAAATCTT+GGG | + | chr7_1:70463145-70463164 | None:intergenic | 25.0% |
| !!! | AAGAAGATTTTGAGAAATCT+TGG | + | chr7_1:70463146-70463165 | None:intergenic | 25.0% |
| !!! | ATTATCTTCATTTTTCTTGC+AGG | - | chr7_1:70463297-70463316 | Msa1034810:CDS | 25.0% |
| !!! | TTCTGAAATTCTTCCATTTA+AGG | - | chr7_1:70463345-70463364 | Msa1034810:CDS | 25.0% |
| ! | AAAAAGCGATAATACATTGA+AGG | + | chr7_1:70463426-70463445 | None:intergenic | 25.0% |
| ! | TTTACTGTAACAAATTTGGA+TGG | - | chr7_1:70463796-70463815 | Msa1034810:intron | 25.0% |
| ! | AAATAATGTCTCATTACTCA+AGG | + | chr7_1:70464171-70464190 | None:intergenic | 25.0% |
| ! | GTTAACCAAATTCACTTTAA+CGG | + | chr7_1:70464279-70464298 | None:intergenic | 25.0% |
| ! | TTAAAGTGAATTTGGTTAAC+AGG | - | chr7_1:70464279-70464298 | Msa1034810:intron | 25.0% |
| ! | CTGAAAAGTTAAAAAAAGAG+AGG | + | chr7_1:70462876-70462895 | None:intergenic | 25.0% |
| !!! | AGAAGATTTTGAGAAATCTT+GGG | + | chr7_1:70463145-70463164 | None:intergenic | 25.0% |
| !!! | AAGAAGATTTTGAGAAATCT+TGG | + | chr7_1:70463146-70463165 | None:intergenic | 25.0% |
| !!! | ATTATCTTCATTTTTCTTGC+AGG | - | chr7_1:70463297-70463316 | Msa1034810:CDS | 25.0% |
| !!! | TTCTGAAATTCTTCCATTTA+AGG | - | chr7_1:70463345-70463364 | Msa1034810:CDS | 25.0% |
| ! | AAAAAGCGATAATACATTGA+AGG | + | chr7_1:70463426-70463445 | None:intergenic | 25.0% |
| ! | TTTACTGTAACAAATTTGGA+TGG | - | chr7_1:70463796-70463815 | Msa1034810:intron | 25.0% |
| ! | AAATAATGTCTCATTACTCA+AGG | + | chr7_1:70464171-70464190 | None:intergenic | 25.0% |
| ! | GTTAACCAAATTCACTTTAA+CGG | + | chr7_1:70464279-70464298 | None:intergenic | 25.0% |
| ! | TTAAAGTGAATTTGGTTAAC+AGG | - | chr7_1:70464279-70464298 | Msa1034810:intron | 25.0% |
| ACAAATGAAGTTGTATTGTG+TGG | + | chr7_1:70462739-70462758 | None:intergenic | 30.0% | |
| GTAAGTATCATCATGAATGA+AGG | + | chr7_1:70462939-70462958 | None:intergenic | 30.0% | |
| !! | TTGATGATGATGATGAAATC+TGG | - | chr7_1:70463017-70463036 | Msa1034810:CDS | 30.0% |
| !! | TTCTAGCTCAATTTCTTTGA+TGG | - | chr7_1:70463073-70463092 | Msa1034810:CDS | 30.0% |
| AAAAATTGAGGTAGTAACCT+TGG | + | chr7_1:70463197-70463216 | None:intergenic | 30.0% | |
| CTTCGATTTCTATCCTTAAA+TGG | + | chr7_1:70463361-70463380 | None:intergenic | 30.0% | |
| CATTTAAGGATAGAAATCGA+AGG | - | chr7_1:70463359-70463378 | Msa1034810:CDS | 30.0% | |
| TCCATGTTTCTTGAACAATT+GGG | + | chr7_1:70463748-70463767 | None:intergenic | 30.0% | |
| ATCCATGTTTCTTGAACAAT+TGG | + | chr7_1:70463749-70463768 | None:intergenic | 30.0% | |
| GATCTTCTATTACTTCTTTC+AGG | + | chr7_1:70463916-70463935 | None:intergenic | 30.0% | |
| AAATTCTGAGTCAAATCACA+GGG | - | chr7_1:70463983-70464002 | Msa1034810:intron | 30.0% | |
| AGAATTGAAGGAAAAGAGTA+AGG | - | chr7_1:70464101-70464120 | Msa1034810:CDS | 30.0% | |
| GAATTGAAGGAAAAGAGTAA+GGG | - | chr7_1:70464102-70464121 | Msa1034810:CDS | 30.0% | |
| TGATTCCGTTAAAGTGAATT+TGG | - | chr7_1:70464271-70464290 | Msa1034810:intron | 30.0% | |
| ! | TTTTTCTTCAAAGTGAGAGA+AGG | - | chr7_1:70464382-70464401 | Msa1034810:intron | 30.0% |
| ACAAATGAAGTTGTATTGTG+TGG | + | chr7_1:70462739-70462758 | None:intergenic | 30.0% | |
| GTAAGTATCATCATGAATGA+AGG | + | chr7_1:70462939-70462958 | None:intergenic | 30.0% | |
| !! | TTGATGATGATGATGAAATC+TGG | - | chr7_1:70463017-70463036 | Msa1034810:CDS | 30.0% |
| !! | TTCTAGCTCAATTTCTTTGA+TGG | - | chr7_1:70463073-70463092 | Msa1034810:CDS | 30.0% |
| AAAAATTGAGGTAGTAACCT+TGG | + | chr7_1:70463197-70463216 | None:intergenic | 30.0% | |
| CTTCGATTTCTATCCTTAAA+TGG | + | chr7_1:70463361-70463380 | None:intergenic | 30.0% | |
| CATTTAAGGATAGAAATCGA+AGG | - | chr7_1:70463359-70463378 | Msa1034810:CDS | 30.0% | |
| TCCATGTTTCTTGAACAATT+GGG | + | chr7_1:70463748-70463767 | None:intergenic | 30.0% | |
| ATCCATGTTTCTTGAACAAT+TGG | + | chr7_1:70463749-70463768 | None:intergenic | 30.0% | |
| GATCTTCTATTACTTCTTTC+AGG | + | chr7_1:70463916-70463935 | None:intergenic | 30.0% | |
| AAATTCTGAGTCAAATCACA+GGG | - | chr7_1:70463983-70464002 | Msa1034810:intron | 30.0% | |
| AGAATTGAAGGAAAAGAGTA+AGG | - | chr7_1:70464101-70464120 | Msa1034810:CDS | 30.0% | |
| GAATTGAAGGAAAAGAGTAA+GGG | - | chr7_1:70464102-70464121 | Msa1034810:CDS | 30.0% | |
| TGATTCCGTTAAAGTGAATT+TGG | - | chr7_1:70464271-70464290 | Msa1034810:intron | 30.0% | |
| ! | TTTTTCTTCAAAGTGAGAGA+AGG | - | chr7_1:70464382-70464401 | Msa1034810:intron | 30.0% |
| CTCAAAAAACAACACCTCTT+TGG | - | chr7_1:70462777-70462796 | Msa1034810:three_prime_UTR | 35.0% | |
| TGGAACCAGAAAACATTGAT+TGG | - | chr7_1:70462897-70462916 | Msa1034810:three_prime_UTR | 35.0% | |
| ! | GGAACCAGAAAACATTGATT+GGG | - | chr7_1:70462898-70462917 | Msa1034810:three_prime_UTR | 35.0% |
| ! | TTGTCCCAATCAATGTTTTC+TGG | + | chr7_1:70462905-70462924 | None:intergenic | 35.0% |
| AGTATCATCATGAATGAAGG+TGG | + | chr7_1:70462936-70462955 | None:intergenic | 35.0% | |
| TCATCATCATCATCAACAAG+AGG | + | chr7_1:70463013-70463032 | None:intergenic | 35.0% | |
| GCAGGCAAAGTTATTAAGAT+TGG | - | chr7_1:70463315-70463334 | Msa1034810:CDS | 35.0% | |
| TGGAAGAATTTCAGAAAAGC+TGG | + | chr7_1:70463341-70463360 | None:intergenic | 35.0% | |
| ACCCAATTGTTCAAGAAACA+TGG | - | chr7_1:70463744-70463763 | Msa1034810:CDS | 35.0% | |
| ACTGTAACAAATTTGGATGG+TGG | - | chr7_1:70463799-70463818 | Msa1034810:intron | 35.0% | |
| CTGTAACAAATTTGGATGGT+GGG | - | chr7_1:70463800-70463819 | Msa1034810:intron | 35.0% | |
| ! | TTTGACTTTGACCTCAACAA+CGG | + | chr7_1:70463844-70463863 | None:intergenic | 35.0% |
| CTTCTATTACTTCTTTCAGG+AGG | + | chr7_1:70463913-70463932 | None:intergenic | 35.0% | |
| TCAGCTCAAAATTTATTGGG+TGG | - | chr7_1:70463955-70463974 | Msa1034810:CDS | 35.0% | |
| TCAAAATTTATTGGGTGGCA+GGG | - | chr7_1:70463960-70463979 | Msa1034810:CDS | 35.0% | |
| GAAATTCTGAGTCAAATCAC+AGG | - | chr7_1:70463982-70464001 | Msa1034810:intron | 35.0% | |
| ! | TGGAGTGTTAGAAGAATTGA+AGG | - | chr7_1:70464089-70464108 | Msa1034810:CDS | 35.0% |
| AGTTGCATATAAGAGAGTTC+TGG | - | chr7_1:70464338-70464357 | Msa1034810:intron | 35.0% | |
| ! | GGTCTAGAACAATTTAGACT+AGG | - | chr7_1:70464359-70464378 | Msa1034810:intron | 35.0% |
| !! | AAGTGAGAGAAGGTGTTAAA+TGG | - | chr7_1:70464392-70464411 | Msa1034810:intron | 35.0% |
| !! | AGTGAGAGAAGGTGTTAAAT+GGG | - | chr7_1:70464393-70464412 | Msa1034810:intron | 35.0% |
| CTCAAAAAACAACACCTCTT+TGG | - | chr7_1:70462777-70462796 | Msa1034810:three_prime_UTR | 35.0% | |
| TGGAACCAGAAAACATTGAT+TGG | - | chr7_1:70462897-70462916 | Msa1034810:three_prime_UTR | 35.0% | |
| ! | GGAACCAGAAAACATTGATT+GGG | - | chr7_1:70462898-70462917 | Msa1034810:three_prime_UTR | 35.0% |
| ! | TTGTCCCAATCAATGTTTTC+TGG | + | chr7_1:70462905-70462924 | None:intergenic | 35.0% |
| AGTATCATCATGAATGAAGG+TGG | + | chr7_1:70462936-70462955 | None:intergenic | 35.0% | |
| TCATCATCATCATCAACAAG+AGG | + | chr7_1:70463013-70463032 | None:intergenic | 35.0% | |
| GCAGGCAAAGTTATTAAGAT+TGG | - | chr7_1:70463315-70463334 | Msa1034810:CDS | 35.0% | |
| TGGAAGAATTTCAGAAAAGC+TGG | + | chr7_1:70463341-70463360 | None:intergenic | 35.0% | |
| ACCCAATTGTTCAAGAAACA+TGG | - | chr7_1:70463744-70463763 | Msa1034810:CDS | 35.0% | |
| ACTGTAACAAATTTGGATGG+TGG | - | chr7_1:70463799-70463818 | Msa1034810:intron | 35.0% | |
| CTGTAACAAATTTGGATGGT+GGG | - | chr7_1:70463800-70463819 | Msa1034810:intron | 35.0% | |
| ! | TTTGACTTTGACCTCAACAA+CGG | + | chr7_1:70463844-70463863 | None:intergenic | 35.0% |
| CTTCTATTACTTCTTTCAGG+AGG | + | chr7_1:70463913-70463932 | None:intergenic | 35.0% | |
| TCAGCTCAAAATTTATTGGG+TGG | - | chr7_1:70463955-70463974 | Msa1034810:CDS | 35.0% | |
| TCAAAATTTATTGGGTGGCA+GGG | - | chr7_1:70463960-70463979 | Msa1034810:CDS | 35.0% | |
| GAAATTCTGAGTCAAATCAC+AGG | - | chr7_1:70463982-70464001 | Msa1034810:intron | 35.0% | |
| ! | TGGAGTGTTAGAAGAATTGA+AGG | - | chr7_1:70464089-70464108 | Msa1034810:CDS | 35.0% |
| AGTTGCATATAAGAGAGTTC+TGG | - | chr7_1:70464338-70464357 | Msa1034810:intron | 35.0% | |
| ! | GGTCTAGAACAATTTAGACT+AGG | - | chr7_1:70464359-70464378 | Msa1034810:intron | 35.0% |
| !! | AAGTGAGAGAAGGTGTTAAA+TGG | - | chr7_1:70464392-70464411 | Msa1034810:intron | 35.0% |
| !! | AGTGAGAGAAGGTGTTAAAT+GGG | - | chr7_1:70464393-70464412 | Msa1034810:intron | 35.0% |
| AATGGTTGAAACAGCCAAAG+AGG | + | chr7_1:70462794-70462813 | None:intergenic | 40.0% | |
| ATCATCAACAAGAGGCTCAT+TGG | + | chr7_1:70463005-70463024 | None:intergenic | 40.0% | |
| !!! | GAAATCTGGTTTTGCACTCA+AGG | - | chr7_1:70463031-70463050 | Msa1034810:CDS | 40.0% |
| TGAGGTAGTAACCTTGGAAT+TGG | + | chr7_1:70463191-70463210 | None:intergenic | 40.0% | |
| ! | GGATTAAACTGACTCACAGA+AGG | + | chr7_1:70463517-70463536 | None:intergenic | 40.0% |
| TCGTTCCTAAATGTGTGACA+CGG | + | chr7_1:70463597-70463616 | None:intergenic | 40.0% | |
| GGAAAATCCTTCAGCTGTTA+AGG | - | chr7_1:70463702-70463721 | Msa1034810:intron | 40.0% | |
| TCACAATCCTTAACAGCTGA+AGG | + | chr7_1:70463712-70463731 | None:intergenic | 40.0% | |
| CTTGAACAATTGGGTCTTCT+AGG | + | chr7_1:70463739-70463758 | None:intergenic | 40.0% | |
| CTCAAAATTTATTGGGTGGC+AGG | - | chr7_1:70463959-70463978 | Msa1034810:CDS | 40.0% | |
| !! | GGTTTTGCTCTGAATTGAAG+AGG | - | chr7_1:70464004-70464023 | Msa1034810:intron | 40.0% |
| AATTGAAGAGGCTAGCAACA+AGG | - | chr7_1:70464016-70464035 | Msa1034810:intron | 40.0% | |
| AGGAAGGGTTCTACTAAGAA+AGG | - | chr7_1:70464036-70464055 | Msa1034810:intron | 40.0% | |
| AAGGGTTCTACTAAGAAAGG+AGG | - | chr7_1:70464039-70464058 | Msa1034810:intron | 40.0% | |
| AGGGTTCTACTAAGAAAGGA+GGG | - | chr7_1:70464040-70464059 | Msa1034810:intron | 40.0% | |
| GAGAAGGGCTCAAATTCAAA+TGG | - | chr7_1:70464069-70464088 | Msa1034810:CDS | 40.0% | |
| AATGGTTGAAACAGCCAAAG+AGG | + | chr7_1:70462794-70462813 | None:intergenic | 40.0% | |
| ATCATCAACAAGAGGCTCAT+TGG | + | chr7_1:70463005-70463024 | None:intergenic | 40.0% | |
| !!! | GAAATCTGGTTTTGCACTCA+AGG | - | chr7_1:70463031-70463050 | Msa1034810:CDS | 40.0% |
| TGAGGTAGTAACCTTGGAAT+TGG | + | chr7_1:70463191-70463210 | None:intergenic | 40.0% | |
| ! | GGATTAAACTGACTCACAGA+AGG | + | chr7_1:70463517-70463536 | None:intergenic | 40.0% |
| TCGTTCCTAAATGTGTGACA+CGG | + | chr7_1:70463597-70463616 | None:intergenic | 40.0% | |
| GGAAAATCCTTCAGCTGTTA+AGG | - | chr7_1:70463702-70463721 | Msa1034810:intron | 40.0% | |
| TCACAATCCTTAACAGCTGA+AGG | + | chr7_1:70463712-70463731 | None:intergenic | 40.0% | |
| CTTGAACAATTGGGTCTTCT+AGG | + | chr7_1:70463739-70463758 | None:intergenic | 40.0% | |
| CTCAAAATTTATTGGGTGGC+AGG | - | chr7_1:70463959-70463978 | Msa1034810:CDS | 40.0% | |
| !! | GGTTTTGCTCTGAATTGAAG+AGG | - | chr7_1:70464004-70464023 | Msa1034810:intron | 40.0% |
| AATTGAAGAGGCTAGCAACA+AGG | - | chr7_1:70464016-70464035 | Msa1034810:intron | 40.0% | |
| AGGAAGGGTTCTACTAAGAA+AGG | - | chr7_1:70464036-70464055 | Msa1034810:intron | 40.0% | |
| AAGGGTTCTACTAAGAAAGG+AGG | - | chr7_1:70464039-70464058 | Msa1034810:intron | 40.0% | |
| AGGGTTCTACTAAGAAAGGA+GGG | - | chr7_1:70464040-70464059 | Msa1034810:intron | 40.0% | |
| GAGAAGGGCTCAAATTCAAA+TGG | - | chr7_1:70464069-70464088 | Msa1034810:CDS | 40.0% | |
| GCAGAGAGATCAACCCATTT+GGG | + | chr7_1:70462977-70462996 | None:intergenic | 45.0% | |
| AGCAGAGAGATCAACCCATT+TGG | + | chr7_1:70462978-70462997 | None:intergenic | 45.0% | |
| ATCAACAAGAGGCTCATTGG+AGG | + | chr7_1:70463002-70463021 | None:intergenic | 45.0% | |
| AAGGTGAGGCTTTCTTCAAC+AGG | - | chr7_1:70463050-70463069 | Msa1034810:CDS | 45.0% | |
| TTGGTCGTGGTTGTAGTTGT+GGG | + | chr7_1:70463172-70463191 | None:intergenic | 45.0% | |
| ATTGGTCGTGGTTGTAGTTG+TGG | + | chr7_1:70463173-70463192 | None:intergenic | 45.0% | |
| TACAACCACGACCAATTCCA+AGG | - | chr7_1:70463177-70463196 | Msa1034810:CDS | 45.0% | |
| AGTAACCTTGGAATTGGTCG+TGG | + | chr7_1:70463185-70463204 | None:intergenic | 45.0% | |
| !! | CAACGGCTTCTTTAGGTTGT+TGG | + | chr7_1:70463827-70463846 | None:intergenic | 45.0% |
| ACCTAAAGAAGCCGTTGTTG+AGG | - | chr7_1:70463830-70463849 | Msa1034810:intron | 45.0% | |
| ACCTCAACAACGGCTTCTTT+AGG | + | chr7_1:70463834-70463853 | None:intergenic | 45.0% | |
| AAGAGGCTAGCAACAAGGAA+GGG | - | chr7_1:70464021-70464040 | Msa1034810:intron | 45.0% | |
| GGGTTCTACTAAGAAAGGAG+GGG | - | chr7_1:70464041-70464060 | Msa1034810:intron | 45.0% | |
| GGTTCTACTAAGAAAGGAGG+GGG | - | chr7_1:70464042-70464061 | Msa1034810:intron | 45.0% | |
| GTTCTACTAAGAAAGGAGGG+GGG | - | chr7_1:70464043-70464062 | Msa1034810:intron | 45.0% | |
| AGAGTAAGGGACGCAAAGAA+AGG | - | chr7_1:70464115-70464134 | Msa1034810:CDS | 45.0% | |
| GAGTAAGGGACGCAAAGAAA+GGG | - | chr7_1:70464116-70464135 | Msa1034810:CDS | 45.0% | |
| CCTTCCTTGACAACAAGCAA+GGG | + | chr7_1:70464144-70464163 | None:intergenic | 45.0% | |
| !! | CCTTGCTTGTTGTCAAGGAA+GGG | - | chr7_1:70464142-70464161 | Msa1034810:CDS | 45.0% |
| GCAGAGAGATCAACCCATTT+GGG | + | chr7_1:70462977-70462996 | None:intergenic | 45.0% | |
| AGCAGAGAGATCAACCCATT+TGG | + | chr7_1:70462978-70462997 | None:intergenic | 45.0% | |
| ATCAACAAGAGGCTCATTGG+AGG | + | chr7_1:70463002-70463021 | None:intergenic | 45.0% | |
| AAGGTGAGGCTTTCTTCAAC+AGG | - | chr7_1:70463050-70463069 | Msa1034810:CDS | 45.0% | |
| TTGGTCGTGGTTGTAGTTGT+GGG | + | chr7_1:70463172-70463191 | None:intergenic | 45.0% | |
| ATTGGTCGTGGTTGTAGTTG+TGG | + | chr7_1:70463173-70463192 | None:intergenic | 45.0% | |
| TACAACCACGACCAATTCCA+AGG | - | chr7_1:70463177-70463196 | Msa1034810:CDS | 45.0% | |
| AGTAACCTTGGAATTGGTCG+TGG | + | chr7_1:70463185-70463204 | None:intergenic | 45.0% | |
| !! | CAACGGCTTCTTTAGGTTGT+TGG | + | chr7_1:70463827-70463846 | None:intergenic | 45.0% |
| ACCTAAAGAAGCCGTTGTTG+AGG | - | chr7_1:70463830-70463849 | Msa1034810:intron | 45.0% | |
| ACCTCAACAACGGCTTCTTT+AGG | + | chr7_1:70463834-70463853 | None:intergenic | 45.0% | |
| AAGAGGCTAGCAACAAGGAA+GGG | - | chr7_1:70464021-70464040 | Msa1034810:intron | 45.0% | |
| GGGTTCTACTAAGAAAGGAG+GGG | - | chr7_1:70464041-70464060 | Msa1034810:intron | 45.0% | |
| GGTTCTACTAAGAAAGGAGG+GGG | - | chr7_1:70464042-70464061 | Msa1034810:intron | 45.0% | |
| GTTCTACTAAGAAAGGAGGG+GGG | - | chr7_1:70464043-70464062 | Msa1034810:intron | 45.0% | |
| AGAGTAAGGGACGCAAAGAA+AGG | - | chr7_1:70464115-70464134 | Msa1034810:CDS | 45.0% | |
| GAGTAAGGGACGCAAAGAAA+GGG | - | chr7_1:70464116-70464135 | Msa1034810:CDS | 45.0% | |
| CCTTCCTTGACAACAAGCAA+GGG | + | chr7_1:70464144-70464163 | None:intergenic | 45.0% | |
| !! | CCTTGCTTGTTGTCAAGGAA+GGG | - | chr7_1:70464142-70464161 | Msa1034810:CDS | 45.0% |
| !!! | CTGGTTTTGCACTCAAGGTG+AGG | - | chr7_1:70463036-70463055 | Msa1034810:CDS | 50.0% |
| CGAGACCGTGTCACACATTT+AGG | - | chr7_1:70463589-70463608 | Msa1034810:intron | 50.0% | |
| GAAGAGGCTAGCAACAAGGA+AGG | - | chr7_1:70464020-70464039 | Msa1034810:intron | 50.0% | |
| AAAGGAGGGGGGAATGAGAA+GGG | - | chr7_1:70464054-70464073 | Msa1034810:intron | 50.0% | |
| !! | GGTACCCTTGCTTGTTGTCA+AGG | - | chr7_1:70464137-70464156 | Msa1034810:CDS | 50.0% |
| !! | CCCTTGCTTGTTGTCAAGGA+AGG | - | chr7_1:70464141-70464160 | Msa1034810:CDS | 50.0% |
| CCCTTCCTTGACAACAAGCA+AGG | + | chr7_1:70464145-70464164 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTGCACTCAAGGTG+AGG | - | chr7_1:70463036-70463055 | Msa1034810:CDS | 50.0% |
| CGAGACCGTGTCACACATTT+AGG | - | chr7_1:70463589-70463608 | Msa1034810:intron | 50.0% | |
| GAAGAGGCTAGCAACAAGGA+AGG | - | chr7_1:70464020-70464039 | Msa1034810:intron | 50.0% | |
| AAAGGAGGGGGGAATGAGAA+GGG | - | chr7_1:70464054-70464073 | Msa1034810:intron | 50.0% | |
| !! | GGTACCCTTGCTTGTTGTCA+AGG | - | chr7_1:70464137-70464156 | Msa1034810:CDS | 50.0% |
| !! | CCCTTGCTTGTTGTCAAGGA+AGG | - | chr7_1:70464141-70464160 | Msa1034810:CDS | 50.0% |
| CCCTTCCTTGACAACAAGCA+AGG | + | chr7_1:70464145-70464164 | None:intergenic | 50.0% | |
| AGAACTTCGACGCGCCCAAA+TGG | - | chr7_1:70462960-70462979 | Msa1034810:CDS | 55.0% | |
| GAACTTCGACGCGCCCAAAT+GGG | - | chr7_1:70462961-70462980 | Msa1034810:CDS | 55.0% | |
| GAAAGGAGGGGGGAATGAGA+AGG | - | chr7_1:70464053-70464072 | Msa1034810:intron | 55.0% | |
| AGAACTTCGACGCGCCCAAA+TGG | - | chr7_1:70462960-70462979 | Msa1034810:CDS | 55.0% | |
| GAACTTCGACGCGCCCAAAT+GGG | - | chr7_1:70462961-70462980 | Msa1034810:CDS | 55.0% | |
| GAAAGGAGGGGGGAATGAGA+AGG | - | chr7_1:70464053-70464072 | Msa1034810:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 70462643 | 70464468 | 70462643 | ID=Msa1034810;Name=Msa1034810 |
| chr7_1 | mRNA | 70462643 | 70464468 | 70462643 | ID=Msa1034810-mRNA-1;Parent=Msa1034810;Name=Msa1034810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=71|1|1|1|0.75|0.8|5|295|252 |
| chr7_1 | exon | 70462643 | 70463409 | 70462643 | ID=Msa1034810-mRNA-1:exon:16863;Parent=Msa1034810-mRNA-1 |
| chr7_1 | exon | 70463731 | 70463792 | 70463731 | ID=Msa1034810-mRNA-1:exon:16862;Parent=Msa1034810-mRNA-1 |
| chr7_1 | exon | 70463913 | 70463980 | 70463913 | ID=Msa1034810-mRNA-1:exon:16861;Parent=Msa1034810-mRNA-1 |
| chr7_1 | exon | 70464059 | 70464215 | 70464059 | ID=Msa1034810-mRNA-1:exon:16860;Parent=Msa1034810-mRNA-1 |
| chr7_1 | exon | 70464398 | 70464468 | 70464398 | ID=Msa1034810-mRNA-1:exon:16859;Parent=Msa1034810-mRNA-1 |
| chr7_1 | five_prime_UTR | 70464398 | 70464468 | 70464398 | ID=Msa1034810-mRNA-1:five_prime_utr;Parent=Msa1034810-mRNA-1 |
| chr7_1 | CDS | 70464059 | 70464215 | 70464059 | ID=Msa1034810-mRNA-1:cds;Parent=Msa1034810-mRNA-1 |
| chr7_1 | CDS | 70463913 | 70463980 | 70463913 | ID=Msa1034810-mRNA-1:cds;Parent=Msa1034810-mRNA-1 |
| chr7_1 | CDS | 70463731 | 70463792 | 70463731 | ID=Msa1034810-mRNA-1:cds;Parent=Msa1034810-mRNA-1 |
| chr7_1 | CDS | 70462938 | 70463409 | 70462938 | ID=Msa1034810-mRNA-1:cds;Parent=Msa1034810-mRNA-1 |
| chr7_1 | three_prime_UTR | 70462643 | 70462937 | 70462643 | ID=Msa1034810-mRNA-1:three_prime_utr;Parent=Msa1034810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
