Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1115710 | XP_003625175.1 | 92.857 | 252 | 15 | 2 | 1 | 250 | 1 | 251 | 3.03e-159 | 452 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1115710 | G7KTL5 | 92.857 | 252 | 15 | 2 | 1 | 250 | 1 | 251 | 1.45e-159 | 452 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0048510 | Msa1115710 | 0.805504 | 1.292997e-49 | -8.615850e-47 |
Msa0666700 | Msa1115710 | 0.813344 | 2.684296e-51 | -8.615850e-47 |
Msa0735780 | Msa1115710 | 0.809690 | 1.670854e-50 | -8.615850e-47 |
Msa0761670 | Msa1115710 | 0.801461 | 8.905671e-49 | -8.615850e-47 |
Msa0828970 | Msa1115710 | 0.800766 | 1.235624e-48 | -8.615850e-47 |
Msa0190570 | Msa1115710 | 0.819044 | 1.427600e-52 | -8.615850e-47 |
Msa0213030 | Msa1115710 | 0.808926 | 2.436060e-50 | -8.615850e-47 |
Msa0225860 | Msa1115710 | 0.805591 | 1.239868e-49 | -8.615850e-47 |
Msa1034810 | Msa1115710 | 0.890275 | 1.141714e-73 | -8.615850e-47 |
Msa1042160 | Msa1115710 | 0.807378 | 5.205742e-50 | -8.615850e-47 |
Msa1042190 | Msa1115710 | 0.809283 | 2.043020e-50 | -8.615850e-47 |
Msa1074860 | Msa1115710 | 0.802098 | 6.590055e-49 | -8.615850e-47 |
Msa1078970 | Msa1115710 | 0.801434 | 9.020382e-49 | -8.615850e-47 |
Msa1081390 | Msa1115710 | 0.816216 | 6.199160e-52 | -8.615850e-47 |
Msa1084530 | Msa1115710 | 0.800065 | 1.716428e-48 | -8.615850e-47 |
Msa0242590 | Msa1115710 | 0.800808 | 1.211635e-48 | -8.615850e-47 |
Msa0260510 | Msa1115710 | 0.808515 | 2.982412e-50 | -8.615850e-47 |
Msa0298470 | Msa1115710 | 0.815947 | 7.118946e-52 | -8.615850e-47 |
Msa0337480 | Msa1115710 | 0.806928 | 6.481505e-50 | -8.615850e-47 |
Msa1115710 | Msa1116220 | 0.816540 | 5.247076e-52 | -8.615850e-47 |
Msa1115710 | Msa1125820 | 0.800299 | 1.538408e-48 | -8.615850e-47 |
Msa1115710 | Msa1162180 | 0.876318 | 1.535680e-68 | -8.615850e-47 |
Msa1115710 | Msa1167470 | 0.800452 | 1.431816e-48 | -8.615850e-47 |
Msa1115710 | Msa1343170 | 0.827293 | 1.694391e-54 | -8.615850e-47 |
Msa1115710 | Msa1343180 | 0.834909 | 2.282291e-56 | -8.615850e-47 |
Msa1115710 | Msa1397400 | 0.818630 | 1.773071e-52 | -8.615850e-47 |
Msa1115710 | Msa1420950 | 0.810802 | 9.616072e-51 | -8.615850e-47 |
Msa0580370 | Msa1115710 | 0.801585 | 8.399866e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1115710 | MtrunA17_Chr7g0257991 | 92.857 | 252 | 15 | 2 | 1 | 250 | 1 | 251 | 2.79e-163 | 452 |
Msa1115710 | MtrunA17_Chr3g0088311 | 36.493 | 211 | 109 | 5 | 1 | 207 | 1 | 190 | 8.58e-29 | 112 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1115710 | AT3G52110.4 | 35.827 | 254 | 115 | 12 | 1 | 246 | 1 | 214 | 9.62e-30 | 112 |
Msa1115710 | AT3G52110.2 | 35.827 | 254 | 115 | 12 | 1 | 246 | 1 | 214 | 3.02e-29 | 112 |
Msa1115710 | AT3G52110.3 | 35.827 | 254 | 115 | 12 | 1 | 246 | 1 | 214 | 3.09e-29 | 112 |
Msa1115710 | AT3G52110.1 | 35.827 | 254 | 115 | 12 | 1 | 246 | 1 | 214 | 7.16e-29 | 112 |
Find 78 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGAAATTCTTCCATTTA+AGG | 0.041761 | 7_3:-63191772 | Msa1115710:CDS |
GATCTTCTATTACTTCTTTC+AGG | 0.129146 | 7_3:+63191194 | None:intergenic |
AAACTTTACTGTAACAAATT+TGG | 0.131238 | 7_3:-63191315 | Msa1115710:CDS |
CTTGAACAATTGGGTCTTCT+AGG | 0.208167 | 7_3:+63191371 | None:intergenic |
AAGTGAGAGAAGGTGTTAAA+TGG | 0.210894 | 7_3:-63190715 | Msa1115710:three_prime_UTR |
CTTCGATTTCTATCCTTAAA+TGG | 0.242020 | 7_3:+63191759 | None:intergenic |
TGATTCCGTTAAAGTGAATT+TGG | 0.250039 | 7_3:-63190836 | Msa1115710:three_prime_UTR |
ATCCATGTTTCTTGAACAAT+TGG | 0.261018 | 7_3:+63191361 | None:intergenic |
TTAAAGTGAATTTGGTTAAC+AGG | 0.271543 | 7_3:-63190828 | Msa1115710:three_prime_UTR |
AAATGAGCATTGTCGAAGTT+TGG | 0.296048 | 7_3:-63190660 | None:intergenic |
GTTAACCAAATTCACTTTAA+CGG | 0.305486 | 7_3:+63190831 | None:intergenic |
AAGAAGATCTTGAGAAATCT+TGG | 0.309017 | 7_3:+63191974 | None:intergenic |
GGAAAATCCTTCAGCTGTTA+AGG | 0.334128 | 7_3:-63191405 | Msa1115710:CDS |
AAATTTGTTACAGTAAAGTT+TGG | 0.339133 | 7_3:+63191317 | None:intergenic |
TTGTTGATGATGATGAAATC+TGG | 0.344812 | 7_3:-63192100 | Msa1115710:CDS |
GCAGGCAAAGTTATTAAGAT+TGG | 0.355508 | 7_3:-63191802 | Msa1115710:intron |
AGAATTGAAGGAAAAGAGTA+AGG | 0.363655 | 7_3:-63191006 | Msa1115710:CDS |
CAACGGCTTCTTTAGGTTGT+TGG | 0.382877 | 7_3:+63191283 | None:intergenic |
ACCTCAACAACGGCTTCTTT+AGG | 0.384314 | 7_3:+63191276 | None:intergenic |
CTCAAAATTTATTGGGTGGC+AGG | 0.386361 | 7_3:-63191148 | Msa1115710:CDS |
TGAGGTAGTAACCTTGGAAT+TGG | 0.388500 | 7_3:+63191929 | None:intergenic |
AGCAGAGAGATCAACCCATT+TGG | 0.390275 | 7_3:+63192139 | None:intergenic |
TGGAACCAGAAAACATTGAT+TGG | 0.393800 | 7_3:-63192217 | Msa1115710:CDS |
ATCATCAACAAGAGGCTCAT+TGG | 0.420743 | 7_3:+63192112 | None:intergenic |
GCAGAGAGATCAACCCATTT+GGG | 0.436277 | 7_3:+63192140 | None:intergenic |
AGAACTTCGACGCGCCCAAA+TGG | 0.439641 | 7_3:-63192154 | Msa1115710:CDS |
AGTGAGAGAAGGTGTTAAAT+GGG | 0.440501 | 7_3:-63190714 | Msa1115710:three_prime_UTR |
AGAAGATCTTGAGAAATCTT+GGG | 0.443856 | 7_3:+63191975 | None:intergenic |
TTGGTCGTGGTTATAGTTGC+GGG | 0.449628 | 7_3:+63191948 | None:intergenic |
AGTTGCATATAAGAGAGTTC+TGG | 0.450555 | 7_3:-63190769 | Msa1115710:three_prime_UTR |
GAGAAGGGCTCAAATTCAAA+TGG | 0.468513 | 7_3:-63191038 | Msa1115710:CDS |
CTGTAACAAATTTGGATGGT+GGG | 0.481657 | 7_3:-63191307 | Msa1115710:CDS |
TGGAAGAATTTCAGAAAAGC+TGG | 0.482092 | 7_3:+63191779 | None:intergenic |
TGGAGTGTTAGAAGAATTGA+AGG | 0.486427 | 7_3:-63191018 | Msa1115710:CDS |
CCCTTGCTTGTTGTCAAGGA+AGG | 0.489257 | 7_3:-63190966 | Msa1115710:CDS |
TCCATGTTTCTTGAACAATT+GGG | 0.492758 | 7_3:+63191362 | None:intergenic |
ATTGGTCGTGGTTATAGTTG+CGG | 0.494946 | 7_3:+63191947 | None:intergenic |
GGTACCCTTGCTTGTTGTCA+AGG | 0.495287 | 7_3:-63190970 | Msa1115710:CDS |
TTACAACAAATTCGACCGTT+GGG | 0.495332 | 7_3:+63192455 | None:intergenic |
AGTTCTGGTCTAGAACAATC+TGG | 0.499041 | 7_3:-63190754 | Msa1115710:three_prime_UTR |
AGGAAGGGTTCTACTAAGAA+AGG | 0.503091 | 7_3:-63191071 | Msa1115710:CDS |
GAACTTCGACGCGCCCAAAT+GGG | 0.504380 | 7_3:-63192153 | Msa1115710:CDS |
TCACAATCCTTAACAGCTGA+AGG | 0.510472 | 7_3:+63191398 | None:intergenic |
AGAGTAAGGGACGCAAAGAA+AGG | 0.522658 | 7_3:-63190992 | Msa1115710:CDS |
GAAATTCTGAGTCAAATCAC+AGG | 0.527180 | 7_3:-63191125 | Msa1115710:CDS |
GGTCTAGAACAATCTGGACT+AGG | 0.527862 | 7_3:-63190748 | Msa1115710:three_prime_UTR |
TTTACAACAAATTCGACCGT+TGG | 0.530067 | 7_3:+63192454 | None:intergenic |
GGAACCAGAAAACATTGATT+GGG | 0.532486 | 7_3:-63192216 | Msa1115710:CDS |
TCAAAATTTATTGGGTGGCA+GGG | 0.533924 | 7_3:-63191147 | Msa1115710:CDS |
TTTACTGTAACAAATTTGGA+TGG | 0.540080 | 7_3:-63191311 | Msa1115710:CDS |
ACTGTAACAAATTTGGATGG+TGG | 0.552283 | 7_3:-63191308 | Msa1115710:CDS |
AAATAATGTCTCATTACTCA+AGG | 0.553989 | 7_3:+63190939 | None:intergenic |
AGTAACCTTGGAATTGGTCG+TGG | 0.558071 | 7_3:+63191935 | None:intergenic |
GAGTAAGGGACGCAAAGAAA+GGG | 0.559077 | 7_3:-63190991 | Msa1115710:CDS |
GAATTGAAGGAAAAGAGTAA+GGG | 0.560426 | 7_3:-63191005 | Msa1115710:CDS |
CCCTTCCTTGACAACAAGCA+AGG | 0.563680 | 7_3:+63190965 | None:intergenic |
GTAAGTATCATCATGAATGA+AGG | 0.565055 | 7_3:+63192178 | None:intergenic |
ACCCAATTGTTCAAGAAACA+TGG | 0.569834 | 7_3:-63191363 | Msa1115710:CDS |
TATAACCACGACCAATTCCA+AGG | 0.571969 | 7_3:-63191940 | Msa1115710:intron |
ATCAACAAGAGGCTCATTGG+AGG | 0.575042 | 7_3:+63192115 | None:intergenic |
CCTTGCTTGTTGTCAAGGAA+GGG | 0.590167 | 7_3:-63190965 | Msa1115710:CDS |
GAAGAGGCTAGCAACAAGGA+AGG | 0.590240 | 7_3:-63191087 | Msa1115710:CDS |
AGGGTTCTACTAAGAAAGGA+GGG | 0.601335 | 7_3:-63191067 | Msa1115710:CDS |
GGGTTCTACTAAGAAAGGAG+GGG | 0.602916 | 7_3:-63191066 | Msa1115710:CDS |
AGTATCATCATGAATGAAGG+TGG | 0.603485 | 7_3:+63192181 | None:intergenic |
TCAGCTCAAAATTTATTGGG+TGG | 0.604858 | 7_3:-63191152 | Msa1115710:CDS |
GGTTCTACTAAGAAAGGAGG+GGG | 0.607034 | 7_3:-63191065 | Msa1115710:CDS |
CTTCTATTACTTCTTTCAGG+AGG | 0.613198 | 7_3:+63191197 | None:intergenic |
AAGAGGCTAGCAACAAGGAA+GGG | 0.620914 | 7_3:-63191086 | Msa1115710:CDS |
ATTTCATCATCATCAACAAG+AGG | 0.621768 | 7_3:+63192104 | None:intergenic |
AATTGAAGAGGCTAGCAACA+AGG | 0.623685 | 7_3:-63191091 | Msa1115710:CDS |
ACCTAAAGAAGCCGTTGTTG+AGG | 0.627199 | 7_3:-63191277 | Msa1115710:CDS |
TTTGACTTTGACCTCAACAA+CGG | 0.631431 | 7_3:+63191266 | None:intergenic |
CCTTCCTTGACAACAAGCAA+GGG | 0.639988 | 7_3:+63190966 | None:intergenic |
AAGGGTTCTACTAAGAAAGG+AGG | 0.646202 | 7_3:-63191068 | Msa1115710:CDS |
CATTTAAGGATAGAAATCGA+AGG | 0.656115 | 7_3:-63191758 | Msa1115710:intron |
AAATTCTGAGTCAAATCACA+GGG | 0.661167 | 7_3:-63191124 | Msa1115710:CDS |
GTTCTACTAAGAAAGGAGGG+GGG | 0.794134 | 7_3:-63191064 | Msa1115710:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTGCATAATTTTTAGTTTT+TGG | + | chr7_3:63191259-63191278 | None:intergenic | 15.0% |
!!! | TCTTTTTAATAGATTTGATT+TGG | + | chr7_3:63191384-63191403 | None:intergenic | 15.0% |
!!! | GTATCATATTAGTAATTTTA+TGG | + | chr7_3:63191535-63191554 | None:intergenic | 15.0% |
!! | TATTATGTTGTATATGTATT+AGG | - | chr7_3:63191687-63191706 | Msa1115710:intron | 15.0% |
!! | ATTATGTTGTATATGTATTA+GGG | - | chr7_3:63191688-63191707 | Msa1115710:intron | 15.0% |
!!! | TTTATTTTTTTGACAAGAAA+CGG | - | chr7_3:63192229-63192248 | Msa1115710:intron | 15.0% |
!!! | ATTGCATAATTTTTAGTTTT+TGG | + | chr7_3:63191259-63191278 | None:intergenic | 15.0% |
!!! | TCTTTTTAATAGATTTGATT+TGG | + | chr7_3:63191384-63191403 | None:intergenic | 15.0% |
!!! | GTATCATATTAGTAATTTTA+TGG | + | chr7_3:63191535-63191554 | None:intergenic | 15.0% |
!! | TATTATGTTGTATATGTATT+AGG | - | chr7_3:63191687-63191706 | Msa1115710:intron | 15.0% |
!! | ATTATGTTGTATATGTATTA+GGG | - | chr7_3:63191688-63191707 | Msa1115710:intron | 15.0% |
!!! | TTTATTTTTTTGACAAGAAA+CGG | - | chr7_3:63192229-63192248 | Msa1115710:intron | 15.0% |
!! | TTCTGTTAATGTAATGATAA+TGG | + | chr7_3:63190812-63190831 | None:intergenic | 20.0% |
!!! | TCTTTTTTTAACTTTTCAGA+TGG | - | chr7_3:63190877-63190896 | Msa1115710:three_prime_UTR | 20.0% |
!! | TGAGAAAAAAACAAAAATTG+AGG | + | chr7_3:63191206-63191225 | None:intergenic | 20.0% |
!!! | TAAAAAGAGTAAAGCTATTT+TGG | - | chr7_3:63191396-63191415 | Msa1115710:CDS | 20.0% |
!!! | TATCTTTGAATGTGTTATTA+TGG | - | chr7_3:63191476-63191495 | Msa1115710:intron | 20.0% |
!! | TACTAATATGATACATTCAA+AGG | - | chr7_3:63191541-63191560 | Msa1115710:intron | 20.0% |
!!! | TCTTAGCTTTAGTTTTTTAA+GGG | + | chr7_3:63191642-63191661 | None:intergenic | 20.0% |
!!! | TTCTTAGCTTTAGTTTTTTA+AGG | + | chr7_3:63191643-63191662 | None:intergenic | 20.0% |
!!! | AAATTTGTTACAGTAAAGTT+TGG | + | chr7_3:63191800-63191819 | None:intergenic | 20.0% |
!! | AAACTTTACTGTAACAAATT+TGG | - | chr7_3:63191799-63191818 | Msa1115710:CDS | 20.0% |
!!! | ATTTTCAGCTCAAAATTTAT+TGG | - | chr7_3:63191958-63191977 | Msa1115710:CDS | 20.0% |
!!! | TTTTCAGCTCAAAATTTATT+GGG | - | chr7_3:63191959-63191978 | Msa1115710:CDS | 20.0% |
!! | TTCTGTTAATGTAATGATAA+TGG | + | chr7_3:63190812-63190831 | None:intergenic | 20.0% |
!!! | TCTTTTTTTAACTTTTCAGA+TGG | - | chr7_3:63190877-63190896 | Msa1115710:three_prime_UTR | 20.0% |
!! | TGAGAAAAAAACAAAAATTG+AGG | + | chr7_3:63191206-63191225 | None:intergenic | 20.0% |
!!! | TAAAAAGAGTAAAGCTATTT+TGG | - | chr7_3:63191396-63191415 | Msa1115710:CDS | 20.0% |
!!! | TATCTTTGAATGTGTTATTA+TGG | - | chr7_3:63191476-63191495 | Msa1115710:intron | 20.0% |
!! | TACTAATATGATACATTCAA+AGG | - | chr7_3:63191541-63191560 | Msa1115710:intron | 20.0% |
!!! | TCTTAGCTTTAGTTTTTTAA+GGG | + | chr7_3:63191642-63191661 | None:intergenic | 20.0% |
!!! | TTCTTAGCTTTAGTTTTTTA+AGG | + | chr7_3:63191643-63191662 | None:intergenic | 20.0% |
!!! | AAATTTGTTACAGTAAAGTT+TGG | + | chr7_3:63191800-63191819 | None:intergenic | 20.0% |
!! | AAACTTTACTGTAACAAATT+TGG | - | chr7_3:63191799-63191818 | Msa1115710:CDS | 20.0% |
!!! | ATTTTCAGCTCAAAATTTAT+TGG | - | chr7_3:63191958-63191977 | Msa1115710:CDS | 20.0% |
!!! | TTTTCAGCTCAAAATTTATT+GGG | - | chr7_3:63191959-63191978 | Msa1115710:CDS | 20.0% |
! | CTGAAAAGTTAAAAAAAGAG+AGG | + | chr7_3:63190876-63190895 | None:intergenic | 25.0% |
!!! | ATTATCTTCATTTTTCTTGC+AGG | - | chr7_3:63191294-63191313 | Msa1115710:CDS | 25.0% |
!!! | TTCTGAAATTCTTCCATTTA+AGG | - | chr7_3:63191342-63191361 | Msa1115710:CDS | 25.0% |
! | AAAAAGCGATAATACATTGA+AGG | + | chr7_3:63191423-63191442 | None:intergenic | 25.0% |
! | TTTACTGTAACAAATTTGGA+TGG | - | chr7_3:63191803-63191822 | Msa1115710:intron | 25.0% |
! | AAATAATGTCTCATTACTCA+AGG | + | chr7_3:63192178-63192197 | None:intergenic | 25.0% |
! | GTTAACCAAATTCACTTTAA+CGG | + | chr7_3:63192286-63192305 | None:intergenic | 25.0% |
! | TTAAAGTGAATTTGGTTAAC+AGG | - | chr7_3:63192286-63192305 | Msa1115710:intron | 25.0% |
! | CTGAAAAGTTAAAAAAAGAG+AGG | + | chr7_3:63190876-63190895 | None:intergenic | 25.0% |
!!! | ATTATCTTCATTTTTCTTGC+AGG | - | chr7_3:63191294-63191313 | Msa1115710:CDS | 25.0% |
!!! | TTCTGAAATTCTTCCATTTA+AGG | - | chr7_3:63191342-63191361 | Msa1115710:CDS | 25.0% |
! | AAAAAGCGATAATACATTGA+AGG | + | chr7_3:63191423-63191442 | None:intergenic | 25.0% |
! | TTTACTGTAACAAATTTGGA+TGG | - | chr7_3:63191803-63191822 | Msa1115710:intron | 25.0% |
! | AAATAATGTCTCATTACTCA+AGG | + | chr7_3:63192178-63192197 | None:intergenic | 25.0% |
! | GTTAACCAAATTCACTTTAA+CGG | + | chr7_3:63192286-63192305 | None:intergenic | 25.0% |
! | TTAAAGTGAATTTGGTTAAC+AGG | - | chr7_3:63192286-63192305 | Msa1115710:intron | 25.0% |
ACAAATGAAGTTGTATTGTG+TGG | + | chr7_3:63190739-63190758 | None:intergenic | 30.0% | |
GTAAGTATCATCATGAATGA+AGG | + | chr7_3:63190939-63190958 | None:intergenic | 30.0% | |
ATTTCATCATCATCAACAAG+AGG | + | chr7_3:63191013-63191032 | None:intergenic | 30.0% | |
!! | TTGTTGATGATGATGAAATC+TGG | - | chr7_3:63191014-63191033 | Msa1115710:CDS | 30.0% |
AGAAGATCTTGAGAAATCTT+GGG | + | chr7_3:63191142-63191161 | None:intergenic | 30.0% | |
AAGAAGATCTTGAGAAATCT+TGG | + | chr7_3:63191143-63191162 | None:intergenic | 30.0% | |
AAAAATTGAGGTAGTAACCT+TGG | + | chr7_3:63191194-63191213 | None:intergenic | 30.0% | |
CTTCGATTTCTATCCTTAAA+TGG | + | chr7_3:63191358-63191377 | None:intergenic | 30.0% | |
CATTTAAGGATAGAAATCGA+AGG | - | chr7_3:63191356-63191375 | Msa1115710:CDS | 30.0% | |
TCCATGTTTCTTGAACAATT+GGG | + | chr7_3:63191755-63191774 | None:intergenic | 30.0% | |
ATCCATGTTTCTTGAACAAT+TGG | + | chr7_3:63191756-63191775 | None:intergenic | 30.0% | |
GATCTTCTATTACTTCTTTC+AGG | + | chr7_3:63191923-63191942 | None:intergenic | 30.0% | |
AAATTCTGAGTCAAATCACA+GGG | - | chr7_3:63191990-63192009 | Msa1115710:intron | 30.0% | |
AGAATTGAAGGAAAAGAGTA+AGG | - | chr7_3:63192108-63192127 | Msa1115710:CDS | 30.0% | |
GAATTGAAGGAAAAGAGTAA+GGG | - | chr7_3:63192109-63192128 | Msa1115710:CDS | 30.0% | |
TGATTCCGTTAAAGTGAATT+TGG | - | chr7_3:63192278-63192297 | Msa1115710:intron | 30.0% | |
! | TTTTTCTTCTAAGTGAGAGA+AGG | - | chr7_3:63192389-63192408 | Msa1115710:intron | 30.0% |
ACAAATGAAGTTGTATTGTG+TGG | + | chr7_3:63190739-63190758 | None:intergenic | 30.0% | |
GTAAGTATCATCATGAATGA+AGG | + | chr7_3:63190939-63190958 | None:intergenic | 30.0% | |
ATTTCATCATCATCAACAAG+AGG | + | chr7_3:63191013-63191032 | None:intergenic | 30.0% | |
!! | TTGTTGATGATGATGAAATC+TGG | - | chr7_3:63191014-63191033 | Msa1115710:CDS | 30.0% |
AGAAGATCTTGAGAAATCTT+GGG | + | chr7_3:63191142-63191161 | None:intergenic | 30.0% | |
AAGAAGATCTTGAGAAATCT+TGG | + | chr7_3:63191143-63191162 | None:intergenic | 30.0% | |
AAAAATTGAGGTAGTAACCT+TGG | + | chr7_3:63191194-63191213 | None:intergenic | 30.0% | |
CTTCGATTTCTATCCTTAAA+TGG | + | chr7_3:63191358-63191377 | None:intergenic | 30.0% | |
CATTTAAGGATAGAAATCGA+AGG | - | chr7_3:63191356-63191375 | Msa1115710:CDS | 30.0% | |
TCCATGTTTCTTGAACAATT+GGG | + | chr7_3:63191755-63191774 | None:intergenic | 30.0% | |
ATCCATGTTTCTTGAACAAT+TGG | + | chr7_3:63191756-63191775 | None:intergenic | 30.0% | |
GATCTTCTATTACTTCTTTC+AGG | + | chr7_3:63191923-63191942 | None:intergenic | 30.0% | |
AAATTCTGAGTCAAATCACA+GGG | - | chr7_3:63191990-63192009 | Msa1115710:intron | 30.0% | |
AGAATTGAAGGAAAAGAGTA+AGG | - | chr7_3:63192108-63192127 | Msa1115710:CDS | 30.0% | |
GAATTGAAGGAAAAGAGTAA+GGG | - | chr7_3:63192109-63192128 | Msa1115710:CDS | 30.0% | |
TGATTCCGTTAAAGTGAATT+TGG | - | chr7_3:63192278-63192297 | Msa1115710:intron | 30.0% | |
! | TTTTTCTTCTAAGTGAGAGA+AGG | - | chr7_3:63192389-63192408 | Msa1115710:intron | 30.0% |
CTCAAAAAACAACACCTCTT+TGG | - | chr7_3:63190777-63190796 | Msa1115710:three_prime_UTR | 35.0% | |
TGGAACCAGAAAACATTGAT+TGG | - | chr7_3:63190897-63190916 | Msa1115710:three_prime_UTR | 35.0% | |
! | GGAACCAGAAAACATTGATT+GGG | - | chr7_3:63190898-63190917 | Msa1115710:three_prime_UTR | 35.0% |
! | TTGTCCCAATCAATGTTTTC+TGG | + | chr7_3:63190905-63190924 | None:intergenic | 35.0% |
AGTATCATCATGAATGAAGG+TGG | + | chr7_3:63190936-63190955 | None:intergenic | 35.0% | |
! | GTCTAGCTCAATTTCTTTGA+TGG | - | chr7_3:63191070-63191089 | Msa1115710:CDS | 35.0% |
GCAGGCAAAGTTATTAAGAT+TGG | - | chr7_3:63191312-63191331 | Msa1115710:CDS | 35.0% | |
TGGAAGAATTTCAGAAAAGC+TGG | + | chr7_3:63191338-63191357 | None:intergenic | 35.0% | |
ACCCAATTGTTCAAGAAACA+TGG | - | chr7_3:63191751-63191770 | Msa1115710:intron | 35.0% | |
ACTGTAACAAATTTGGATGG+TGG | - | chr7_3:63191806-63191825 | Msa1115710:intron | 35.0% | |
CTGTAACAAATTTGGATGGT+GGG | - | chr7_3:63191807-63191826 | Msa1115710:intron | 35.0% | |
! | TTTGACTTTGACCTCAACAA+CGG | + | chr7_3:63191851-63191870 | None:intergenic | 35.0% |
CTTCTATTACTTCTTTCAGG+AGG | + | chr7_3:63191920-63191939 | None:intergenic | 35.0% | |
TCAGCTCAAAATTTATTGGG+TGG | - | chr7_3:63191962-63191981 | Msa1115710:CDS | 35.0% | |
TCAAAATTTATTGGGTGGCA+GGG | - | chr7_3:63191967-63191986 | Msa1115710:CDS | 35.0% | |
GAAATTCTGAGTCAAATCAC+AGG | - | chr7_3:63191989-63192008 | Msa1115710:CDS | 35.0% | |
! | TGGAGTGTTAGAAGAATTGA+AGG | - | chr7_3:63192096-63192115 | Msa1115710:CDS | 35.0% |
AGTTGCATATAAGAGAGTTC+TGG | - | chr7_3:63192345-63192364 | Msa1115710:intron | 35.0% | |
!! | AAGTGAGAGAAGGTGTTAAA+TGG | - | chr7_3:63192399-63192418 | Msa1115710:intron | 35.0% |
!! | AGTGAGAGAAGGTGTTAAAT+GGG | - | chr7_3:63192400-63192419 | Msa1115710:intron | 35.0% |
CTCAAAAAACAACACCTCTT+TGG | - | chr7_3:63190777-63190796 | Msa1115710:three_prime_UTR | 35.0% | |
TGGAACCAGAAAACATTGAT+TGG | - | chr7_3:63190897-63190916 | Msa1115710:three_prime_UTR | 35.0% | |
! | GGAACCAGAAAACATTGATT+GGG | - | chr7_3:63190898-63190917 | Msa1115710:three_prime_UTR | 35.0% |
! | TTGTCCCAATCAATGTTTTC+TGG | + | chr7_3:63190905-63190924 | None:intergenic | 35.0% |
AGTATCATCATGAATGAAGG+TGG | + | chr7_3:63190936-63190955 | None:intergenic | 35.0% | |
! | GTCTAGCTCAATTTCTTTGA+TGG | - | chr7_3:63191070-63191089 | Msa1115710:CDS | 35.0% |
GCAGGCAAAGTTATTAAGAT+TGG | - | chr7_3:63191312-63191331 | Msa1115710:CDS | 35.0% | |
TGGAAGAATTTCAGAAAAGC+TGG | + | chr7_3:63191338-63191357 | None:intergenic | 35.0% | |
ACCCAATTGTTCAAGAAACA+TGG | - | chr7_3:63191751-63191770 | Msa1115710:intron | 35.0% | |
ACTGTAACAAATTTGGATGG+TGG | - | chr7_3:63191806-63191825 | Msa1115710:intron | 35.0% | |
CTGTAACAAATTTGGATGGT+GGG | - | chr7_3:63191807-63191826 | Msa1115710:intron | 35.0% | |
! | TTTGACTTTGACCTCAACAA+CGG | + | chr7_3:63191851-63191870 | None:intergenic | 35.0% |
CTTCTATTACTTCTTTCAGG+AGG | + | chr7_3:63191920-63191939 | None:intergenic | 35.0% | |
TCAGCTCAAAATTTATTGGG+TGG | - | chr7_3:63191962-63191981 | Msa1115710:CDS | 35.0% | |
TCAAAATTTATTGGGTGGCA+GGG | - | chr7_3:63191967-63191986 | Msa1115710:CDS | 35.0% | |
GAAATTCTGAGTCAAATCAC+AGG | - | chr7_3:63191989-63192008 | Msa1115710:CDS | 35.0% | |
! | TGGAGTGTTAGAAGAATTGA+AGG | - | chr7_3:63192096-63192115 | Msa1115710:CDS | 35.0% |
AGTTGCATATAAGAGAGTTC+TGG | - | chr7_3:63192345-63192364 | Msa1115710:intron | 35.0% | |
!! | AAGTGAGAGAAGGTGTTAAA+TGG | - | chr7_3:63192399-63192418 | Msa1115710:intron | 35.0% |
!! | AGTGAGAGAAGGTGTTAAAT+GGG | - | chr7_3:63192400-63192419 | Msa1115710:intron | 35.0% |
AATGGTTGAAACAGCCAAAG+AGG | + | chr7_3:63190794-63190813 | None:intergenic | 40.0% | |
ATCATCAACAAGAGGCTCAT+TGG | + | chr7_3:63191005-63191024 | None:intergenic | 40.0% | |
!!! | GAAATCTGGTTTTGCACTCA+AGG | - | chr7_3:63191028-63191047 | Msa1115710:CDS | 40.0% |
ATTGGTCGTGGTTATAGTTG+CGG | + | chr7_3:63191170-63191189 | None:intergenic | 40.0% | |
TATAACCACGACCAATTCCA+AGG | - | chr7_3:63191174-63191193 | Msa1115710:CDS | 40.0% | |
TGAGGTAGTAACCTTGGAAT+TGG | + | chr7_3:63191188-63191207 | None:intergenic | 40.0% | |
! | GGATTAAACTGACTCACAGA+AGG | + | chr7_3:63191514-63191533 | None:intergenic | 40.0% |
TCGTTCCTAAATGTGTGACA+CGG | + | chr7_3:63191604-63191623 | None:intergenic | 40.0% | |
GGAAAATCCTTCAGCTGTTA+AGG | - | chr7_3:63191709-63191728 | Msa1115710:intron | 40.0% | |
TCACAATCCTTAACAGCTGA+AGG | + | chr7_3:63191719-63191738 | None:intergenic | 40.0% | |
CTTGAACAATTGGGTCTTCT+AGG | + | chr7_3:63191746-63191765 | None:intergenic | 40.0% | |
CTCAAAATTTATTGGGTGGC+AGG | - | chr7_3:63191966-63191985 | Msa1115710:CDS | 40.0% | |
!! | GGTTTTGCTCTGAATTGAAG+AGG | - | chr7_3:63192011-63192030 | Msa1115710:intron | 40.0% |
AATTGAAGAGGCTAGCAACA+AGG | - | chr7_3:63192023-63192042 | Msa1115710:intron | 40.0% | |
AGGAAGGGTTCTACTAAGAA+AGG | - | chr7_3:63192043-63192062 | Msa1115710:intron | 40.0% | |
AAGGGTTCTACTAAGAAAGG+AGG | - | chr7_3:63192046-63192065 | Msa1115710:intron | 40.0% | |
AGGGTTCTACTAAGAAAGGA+GGG | - | chr7_3:63192047-63192066 | Msa1115710:intron | 40.0% | |
GAGAAGGGCTCAAATTCAAA+TGG | - | chr7_3:63192076-63192095 | Msa1115710:intron | 40.0% | |
! | AGTTCTGGTCTAGAACAATC+TGG | - | chr7_3:63192360-63192379 | Msa1115710:intron | 40.0% |
AATGGTTGAAACAGCCAAAG+AGG | + | chr7_3:63190794-63190813 | None:intergenic | 40.0% | |
ATCATCAACAAGAGGCTCAT+TGG | + | chr7_3:63191005-63191024 | None:intergenic | 40.0% | |
!!! | GAAATCTGGTTTTGCACTCA+AGG | - | chr7_3:63191028-63191047 | Msa1115710:CDS | 40.0% |
ATTGGTCGTGGTTATAGTTG+CGG | + | chr7_3:63191170-63191189 | None:intergenic | 40.0% | |
TATAACCACGACCAATTCCA+AGG | - | chr7_3:63191174-63191193 | Msa1115710:CDS | 40.0% | |
TGAGGTAGTAACCTTGGAAT+TGG | + | chr7_3:63191188-63191207 | None:intergenic | 40.0% | |
! | GGATTAAACTGACTCACAGA+AGG | + | chr7_3:63191514-63191533 | None:intergenic | 40.0% |
TCGTTCCTAAATGTGTGACA+CGG | + | chr7_3:63191604-63191623 | None:intergenic | 40.0% | |
GGAAAATCCTTCAGCTGTTA+AGG | - | chr7_3:63191709-63191728 | Msa1115710:intron | 40.0% | |
TCACAATCCTTAACAGCTGA+AGG | + | chr7_3:63191719-63191738 | None:intergenic | 40.0% | |
CTTGAACAATTGGGTCTTCT+AGG | + | chr7_3:63191746-63191765 | None:intergenic | 40.0% | |
CTCAAAATTTATTGGGTGGC+AGG | - | chr7_3:63191966-63191985 | Msa1115710:CDS | 40.0% | |
!! | GGTTTTGCTCTGAATTGAAG+AGG | - | chr7_3:63192011-63192030 | Msa1115710:intron | 40.0% |
AATTGAAGAGGCTAGCAACA+AGG | - | chr7_3:63192023-63192042 | Msa1115710:intron | 40.0% | |
AGGAAGGGTTCTACTAAGAA+AGG | - | chr7_3:63192043-63192062 | Msa1115710:intron | 40.0% | |
AAGGGTTCTACTAAGAAAGG+AGG | - | chr7_3:63192046-63192065 | Msa1115710:intron | 40.0% | |
AGGGTTCTACTAAGAAAGGA+GGG | - | chr7_3:63192047-63192066 | Msa1115710:intron | 40.0% | |
GAGAAGGGCTCAAATTCAAA+TGG | - | chr7_3:63192076-63192095 | Msa1115710:intron | 40.0% | |
! | AGTTCTGGTCTAGAACAATC+TGG | - | chr7_3:63192360-63192379 | Msa1115710:intron | 40.0% |
GCAGAGAGATCAACCCATTT+GGG | + | chr7_3:63190977-63190996 | None:intergenic | 45.0% | |
AGCAGAGAGATCAACCCATT+TGG | + | chr7_3:63190978-63190997 | None:intergenic | 45.0% | |
ATCAACAAGAGGCTCATTGG+AGG | + | chr7_3:63191002-63191021 | None:intergenic | 45.0% | |
AAGGTGAGGCTTTCTTCAAC+AGG | - | chr7_3:63191047-63191066 | Msa1115710:CDS | 45.0% | |
AGGTGAGGCTTTCTTCAACA+GGG | - | chr7_3:63191048-63191067 | Msa1115710:CDS | 45.0% | |
TTGGTCGTGGTTATAGTTGC+GGG | + | chr7_3:63191169-63191188 | None:intergenic | 45.0% | |
AGTAACCTTGGAATTGGTCG+TGG | + | chr7_3:63191182-63191201 | None:intergenic | 45.0% | |
!! | CAACGGCTTCTTTAGGTTGT+TGG | + | chr7_3:63191834-63191853 | None:intergenic | 45.0% |
ACCTAAAGAAGCCGTTGTTG+AGG | - | chr7_3:63191837-63191856 | Msa1115710:intron | 45.0% | |
ACCTCAACAACGGCTTCTTT+AGG | + | chr7_3:63191841-63191860 | None:intergenic | 45.0% | |
AAGAGGCTAGCAACAAGGAA+GGG | - | chr7_3:63192028-63192047 | Msa1115710:intron | 45.0% | |
GGGTTCTACTAAGAAAGGAG+GGG | - | chr7_3:63192048-63192067 | Msa1115710:intron | 45.0% | |
GGTTCTACTAAGAAAGGAGG+GGG | - | chr7_3:63192049-63192068 | Msa1115710:intron | 45.0% | |
GTTCTACTAAGAAAGGAGGG+GGG | - | chr7_3:63192050-63192069 | Msa1115710:intron | 45.0% | |
AGAGTAAGGGACGCAAAGAA+AGG | - | chr7_3:63192122-63192141 | Msa1115710:CDS | 45.0% | |
GAGTAAGGGACGCAAAGAAA+GGG | - | chr7_3:63192123-63192142 | Msa1115710:CDS | 45.0% | |
CCTTCCTTGACAACAAGCAA+GGG | + | chr7_3:63192151-63192170 | None:intergenic | 45.0% | |
!! | CCTTGCTTGTTGTCAAGGAA+GGG | - | chr7_3:63192149-63192168 | Msa1115710:CDS | 45.0% |
! | GGTCTAGAACAATCTGGACT+AGG | - | chr7_3:63192366-63192385 | Msa1115710:intron | 45.0% |
GCAGAGAGATCAACCCATTT+GGG | + | chr7_3:63190977-63190996 | None:intergenic | 45.0% | |
AGCAGAGAGATCAACCCATT+TGG | + | chr7_3:63190978-63190997 | None:intergenic | 45.0% | |
ATCAACAAGAGGCTCATTGG+AGG | + | chr7_3:63191002-63191021 | None:intergenic | 45.0% | |
AAGGTGAGGCTTTCTTCAAC+AGG | - | chr7_3:63191047-63191066 | Msa1115710:CDS | 45.0% | |
AGGTGAGGCTTTCTTCAACA+GGG | - | chr7_3:63191048-63191067 | Msa1115710:CDS | 45.0% | |
TTGGTCGTGGTTATAGTTGC+GGG | + | chr7_3:63191169-63191188 | None:intergenic | 45.0% | |
AGTAACCTTGGAATTGGTCG+TGG | + | chr7_3:63191182-63191201 | None:intergenic | 45.0% | |
!! | CAACGGCTTCTTTAGGTTGT+TGG | + | chr7_3:63191834-63191853 | None:intergenic | 45.0% |
ACCTAAAGAAGCCGTTGTTG+AGG | - | chr7_3:63191837-63191856 | Msa1115710:intron | 45.0% | |
ACCTCAACAACGGCTTCTTT+AGG | + | chr7_3:63191841-63191860 | None:intergenic | 45.0% | |
AAGAGGCTAGCAACAAGGAA+GGG | - | chr7_3:63192028-63192047 | Msa1115710:intron | 45.0% | |
GGGTTCTACTAAGAAAGGAG+GGG | - | chr7_3:63192048-63192067 | Msa1115710:intron | 45.0% | |
GGTTCTACTAAGAAAGGAGG+GGG | - | chr7_3:63192049-63192068 | Msa1115710:intron | 45.0% | |
GTTCTACTAAGAAAGGAGGG+GGG | - | chr7_3:63192050-63192069 | Msa1115710:intron | 45.0% | |
AGAGTAAGGGACGCAAAGAA+AGG | - | chr7_3:63192122-63192141 | Msa1115710:CDS | 45.0% | |
GAGTAAGGGACGCAAAGAAA+GGG | - | chr7_3:63192123-63192142 | Msa1115710:CDS | 45.0% | |
CCTTCCTTGACAACAAGCAA+GGG | + | chr7_3:63192151-63192170 | None:intergenic | 45.0% | |
!! | CCTTGCTTGTTGTCAAGGAA+GGG | - | chr7_3:63192149-63192168 | Msa1115710:CDS | 45.0% |
! | GGTCTAGAACAATCTGGACT+AGG | - | chr7_3:63192366-63192385 | Msa1115710:intron | 45.0% |
!!! | CTGGTTTTGCACTCAAGGTG+AGG | - | chr7_3:63191033-63191052 | Msa1115710:CDS | 50.0% |
CGAGACCGTGTCACACATTT+AGG | - | chr7_3:63191596-63191615 | Msa1115710:intron | 50.0% | |
GAAGAGGCTAGCAACAAGGA+AGG | - | chr7_3:63192027-63192046 | Msa1115710:intron | 50.0% | |
AAAGGAGGGGGGAATGAGAA+GGG | - | chr7_3:63192061-63192080 | Msa1115710:intron | 50.0% | |
!! | GGTACCCTTGCTTGTTGTCA+AGG | - | chr7_3:63192144-63192163 | Msa1115710:CDS | 50.0% |
!! | CCCTTGCTTGTTGTCAAGGA+AGG | - | chr7_3:63192148-63192167 | Msa1115710:CDS | 50.0% |
CCCTTCCTTGACAACAAGCA+AGG | + | chr7_3:63192152-63192171 | None:intergenic | 50.0% | |
!!! | CTGGTTTTGCACTCAAGGTG+AGG | - | chr7_3:63191033-63191052 | Msa1115710:CDS | 50.0% |
CGAGACCGTGTCACACATTT+AGG | - | chr7_3:63191596-63191615 | Msa1115710:intron | 50.0% | |
GAAGAGGCTAGCAACAAGGA+AGG | - | chr7_3:63192027-63192046 | Msa1115710:intron | 50.0% | |
AAAGGAGGGGGGAATGAGAA+GGG | - | chr7_3:63192061-63192080 | Msa1115710:intron | 50.0% | |
!! | GGTACCCTTGCTTGTTGTCA+AGG | - | chr7_3:63192144-63192163 | Msa1115710:CDS | 50.0% |
!! | CCCTTGCTTGTTGTCAAGGA+AGG | - | chr7_3:63192148-63192167 | Msa1115710:CDS | 50.0% |
CCCTTCCTTGACAACAAGCA+AGG | + | chr7_3:63192152-63192171 | None:intergenic | 50.0% | |
AGAACTTCGACGCGCCCAAA+TGG | - | chr7_3:63190960-63190979 | Msa1115710:CDS | 55.0% | |
GAACTTCGACGCGCCCAAAT+GGG | - | chr7_3:63190961-63190980 | Msa1115710:CDS | 55.0% | |
GAAAGGAGGGGGGAATGAGA+AGG | - | chr7_3:63192060-63192079 | Msa1115710:intron | 55.0% | |
AGAACTTCGACGCGCCCAAA+TGG | - | chr7_3:63190960-63190979 | Msa1115710:CDS | 55.0% | |
GAACTTCGACGCGCCCAAAT+GGG | - | chr7_3:63190961-63190980 | Msa1115710:CDS | 55.0% | |
GAAAGGAGGGGGGAATGAGA+AGG | - | chr7_3:63192060-63192079 | Msa1115710:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 63190661 | 63192475 | 63190661 | ID=Msa1115710;Name=Msa1115710 |
chr7_3 | mRNA | 63190661 | 63192475 | 63190661 | ID=Msa1115710-mRNA-1;Parent=Msa1115710;Name=Msa1115710-mRNA-1;_AED=0.13;_eAED=0.13;_QI=66|1|1|1|0.75|0.8|5|295|251 |
chr7_3 | exon | 63190661 | 63191427 | 63190661 | ID=Msa1115710-mRNA-1:exon:14824;Parent=Msa1115710-mRNA-1 |
chr7_3 | exon | 63191759 | 63191820 | 63191759 | ID=Msa1115710-mRNA-1:exon:14823;Parent=Msa1115710-mRNA-1 |
chr7_3 | exon | 63191941 | 63192008 | 63191941 | ID=Msa1115710-mRNA-1:exon:14822;Parent=Msa1115710-mRNA-1 |
chr7_3 | exon | 63192087 | 63192240 | 63192087 | ID=Msa1115710-mRNA-1:exon:14821;Parent=Msa1115710-mRNA-1 |
chr7_3 | exon | 63192410 | 63192475 | 63192410 | ID=Msa1115710-mRNA-1:exon:14820;Parent=Msa1115710-mRNA-1 |
chr7_3 | five_prime_UTR | 63192410 | 63192475 | 63192410 | ID=Msa1115710-mRNA-1:five_prime_utr;Parent=Msa1115710-mRNA-1 |
chr7_3 | CDS | 63192087 | 63192240 | 63192087 | ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1 |
chr7_3 | CDS | 63191941 | 63192008 | 63191941 | ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1 |
chr7_3 | CDS | 63191759 | 63191820 | 63191759 | ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1 |
chr7_3 | CDS | 63190956 | 63191427 | 63190956 | ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1 |
chr7_3 | three_prime_UTR | 63190661 | 63190955 | 63190661 | ID=Msa1115710-mRNA-1:three_prime_utr;Parent=Msa1115710-mRNA-1 |
Gene Sequence |
Protein sequence |