AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1115710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115710 MtrunA17_Chr7g0257991 92.857 252 15 2 1 250 1 251 2.79e-163 452
Msa1115710 MtrunA17_Chr3g0088311 36.493 211 109 5 1 207 1 190 8.58e-29 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115710 AT3G52110.4 35.827 254 115 12 1 246 1 214 9.62e-30 112
Msa1115710 AT3G52110.2 35.827 254 115 12 1 246 1 214 3.02e-29 112
Msa1115710 AT3G52110.3 35.827 254 115 12 1 246 1 214 3.09e-29 112
Msa1115710 AT3G52110.1 35.827 254 115 12 1 246 1 214 7.16e-29 112

Find 78 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAAATTCTTCCATTTA+AGG 0.041761 7_3:-63191772 Msa1115710:CDS
GATCTTCTATTACTTCTTTC+AGG 0.129146 7_3:+63191194 None:intergenic
AAACTTTACTGTAACAAATT+TGG 0.131238 7_3:-63191315 Msa1115710:CDS
CTTGAACAATTGGGTCTTCT+AGG 0.208167 7_3:+63191371 None:intergenic
AAGTGAGAGAAGGTGTTAAA+TGG 0.210894 7_3:-63190715 Msa1115710:three_prime_UTR
CTTCGATTTCTATCCTTAAA+TGG 0.242020 7_3:+63191759 None:intergenic
TGATTCCGTTAAAGTGAATT+TGG 0.250039 7_3:-63190836 Msa1115710:three_prime_UTR
ATCCATGTTTCTTGAACAAT+TGG 0.261018 7_3:+63191361 None:intergenic
TTAAAGTGAATTTGGTTAAC+AGG 0.271543 7_3:-63190828 Msa1115710:three_prime_UTR
AAATGAGCATTGTCGAAGTT+TGG 0.296048 7_3:-63190660 None:intergenic
GTTAACCAAATTCACTTTAA+CGG 0.305486 7_3:+63190831 None:intergenic
AAGAAGATCTTGAGAAATCT+TGG 0.309017 7_3:+63191974 None:intergenic
GGAAAATCCTTCAGCTGTTA+AGG 0.334128 7_3:-63191405 Msa1115710:CDS
AAATTTGTTACAGTAAAGTT+TGG 0.339133 7_3:+63191317 None:intergenic
TTGTTGATGATGATGAAATC+TGG 0.344812 7_3:-63192100 Msa1115710:CDS
GCAGGCAAAGTTATTAAGAT+TGG 0.355508 7_3:-63191802 Msa1115710:intron
AGAATTGAAGGAAAAGAGTA+AGG 0.363655 7_3:-63191006 Msa1115710:CDS
CAACGGCTTCTTTAGGTTGT+TGG 0.382877 7_3:+63191283 None:intergenic
ACCTCAACAACGGCTTCTTT+AGG 0.384314 7_3:+63191276 None:intergenic
CTCAAAATTTATTGGGTGGC+AGG 0.386361 7_3:-63191148 Msa1115710:CDS
TGAGGTAGTAACCTTGGAAT+TGG 0.388500 7_3:+63191929 None:intergenic
AGCAGAGAGATCAACCCATT+TGG 0.390275 7_3:+63192139 None:intergenic
TGGAACCAGAAAACATTGAT+TGG 0.393800 7_3:-63192217 Msa1115710:CDS
ATCATCAACAAGAGGCTCAT+TGG 0.420743 7_3:+63192112 None:intergenic
GCAGAGAGATCAACCCATTT+GGG 0.436277 7_3:+63192140 None:intergenic
AGAACTTCGACGCGCCCAAA+TGG 0.439641 7_3:-63192154 Msa1115710:CDS
AGTGAGAGAAGGTGTTAAAT+GGG 0.440501 7_3:-63190714 Msa1115710:three_prime_UTR
AGAAGATCTTGAGAAATCTT+GGG 0.443856 7_3:+63191975 None:intergenic
TTGGTCGTGGTTATAGTTGC+GGG 0.449628 7_3:+63191948 None:intergenic
AGTTGCATATAAGAGAGTTC+TGG 0.450555 7_3:-63190769 Msa1115710:three_prime_UTR
GAGAAGGGCTCAAATTCAAA+TGG 0.468513 7_3:-63191038 Msa1115710:CDS
CTGTAACAAATTTGGATGGT+GGG 0.481657 7_3:-63191307 Msa1115710:CDS
TGGAAGAATTTCAGAAAAGC+TGG 0.482092 7_3:+63191779 None:intergenic
TGGAGTGTTAGAAGAATTGA+AGG 0.486427 7_3:-63191018 Msa1115710:CDS
CCCTTGCTTGTTGTCAAGGA+AGG 0.489257 7_3:-63190966 Msa1115710:CDS
TCCATGTTTCTTGAACAATT+GGG 0.492758 7_3:+63191362 None:intergenic
ATTGGTCGTGGTTATAGTTG+CGG 0.494946 7_3:+63191947 None:intergenic
GGTACCCTTGCTTGTTGTCA+AGG 0.495287 7_3:-63190970 Msa1115710:CDS
TTACAACAAATTCGACCGTT+GGG 0.495332 7_3:+63192455 None:intergenic
AGTTCTGGTCTAGAACAATC+TGG 0.499041 7_3:-63190754 Msa1115710:three_prime_UTR
AGGAAGGGTTCTACTAAGAA+AGG 0.503091 7_3:-63191071 Msa1115710:CDS
GAACTTCGACGCGCCCAAAT+GGG 0.504380 7_3:-63192153 Msa1115710:CDS
TCACAATCCTTAACAGCTGA+AGG 0.510472 7_3:+63191398 None:intergenic
AGAGTAAGGGACGCAAAGAA+AGG 0.522658 7_3:-63190992 Msa1115710:CDS
GAAATTCTGAGTCAAATCAC+AGG 0.527180 7_3:-63191125 Msa1115710:CDS
GGTCTAGAACAATCTGGACT+AGG 0.527862 7_3:-63190748 Msa1115710:three_prime_UTR
TTTACAACAAATTCGACCGT+TGG 0.530067 7_3:+63192454 None:intergenic
GGAACCAGAAAACATTGATT+GGG 0.532486 7_3:-63192216 Msa1115710:CDS
TCAAAATTTATTGGGTGGCA+GGG 0.533924 7_3:-63191147 Msa1115710:CDS
TTTACTGTAACAAATTTGGA+TGG 0.540080 7_3:-63191311 Msa1115710:CDS
ACTGTAACAAATTTGGATGG+TGG 0.552283 7_3:-63191308 Msa1115710:CDS
AAATAATGTCTCATTACTCA+AGG 0.553989 7_3:+63190939 None:intergenic
AGTAACCTTGGAATTGGTCG+TGG 0.558071 7_3:+63191935 None:intergenic
GAGTAAGGGACGCAAAGAAA+GGG 0.559077 7_3:-63190991 Msa1115710:CDS
GAATTGAAGGAAAAGAGTAA+GGG 0.560426 7_3:-63191005 Msa1115710:CDS
CCCTTCCTTGACAACAAGCA+AGG 0.563680 7_3:+63190965 None:intergenic
GTAAGTATCATCATGAATGA+AGG 0.565055 7_3:+63192178 None:intergenic
ACCCAATTGTTCAAGAAACA+TGG 0.569834 7_3:-63191363 Msa1115710:CDS
TATAACCACGACCAATTCCA+AGG 0.571969 7_3:-63191940 Msa1115710:intron
ATCAACAAGAGGCTCATTGG+AGG 0.575042 7_3:+63192115 None:intergenic
CCTTGCTTGTTGTCAAGGAA+GGG 0.590167 7_3:-63190965 Msa1115710:CDS
GAAGAGGCTAGCAACAAGGA+AGG 0.590240 7_3:-63191087 Msa1115710:CDS
AGGGTTCTACTAAGAAAGGA+GGG 0.601335 7_3:-63191067 Msa1115710:CDS
GGGTTCTACTAAGAAAGGAG+GGG 0.602916 7_3:-63191066 Msa1115710:CDS
AGTATCATCATGAATGAAGG+TGG 0.603485 7_3:+63192181 None:intergenic
TCAGCTCAAAATTTATTGGG+TGG 0.604858 7_3:-63191152 Msa1115710:CDS
GGTTCTACTAAGAAAGGAGG+GGG 0.607034 7_3:-63191065 Msa1115710:CDS
CTTCTATTACTTCTTTCAGG+AGG 0.613198 7_3:+63191197 None:intergenic
AAGAGGCTAGCAACAAGGAA+GGG 0.620914 7_3:-63191086 Msa1115710:CDS
ATTTCATCATCATCAACAAG+AGG 0.621768 7_3:+63192104 None:intergenic
AATTGAAGAGGCTAGCAACA+AGG 0.623685 7_3:-63191091 Msa1115710:CDS
ACCTAAAGAAGCCGTTGTTG+AGG 0.627199 7_3:-63191277 Msa1115710:CDS
TTTGACTTTGACCTCAACAA+CGG 0.631431 7_3:+63191266 None:intergenic
CCTTCCTTGACAACAAGCAA+GGG 0.639988 7_3:+63190966 None:intergenic
AAGGGTTCTACTAAGAAAGG+AGG 0.646202 7_3:-63191068 Msa1115710:CDS
CATTTAAGGATAGAAATCGA+AGG 0.656115 7_3:-63191758 Msa1115710:intron
AAATTCTGAGTCAAATCACA+GGG 0.661167 7_3:-63191124 Msa1115710:CDS
GTTCTACTAAGAAAGGAGGG+GGG 0.794134 7_3:-63191064 Msa1115710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGCATAATTTTTAGTTTT+TGG + chr7_3:63191259-63191278 None:intergenic 15.0%
!!! TCTTTTTAATAGATTTGATT+TGG + chr7_3:63191384-63191403 None:intergenic 15.0%
!!! GTATCATATTAGTAATTTTA+TGG + chr7_3:63191535-63191554 None:intergenic 15.0%
!! TATTATGTTGTATATGTATT+AGG - chr7_3:63191687-63191706 Msa1115710:intron 15.0%
!! ATTATGTTGTATATGTATTA+GGG - chr7_3:63191688-63191707 Msa1115710:intron 15.0%
!!! TTTATTTTTTTGACAAGAAA+CGG - chr7_3:63192229-63192248 Msa1115710:intron 15.0%
!!! ATTGCATAATTTTTAGTTTT+TGG + chr7_3:63191259-63191278 None:intergenic 15.0%
!!! TCTTTTTAATAGATTTGATT+TGG + chr7_3:63191384-63191403 None:intergenic 15.0%
!!! GTATCATATTAGTAATTTTA+TGG + chr7_3:63191535-63191554 None:intergenic 15.0%
!! TATTATGTTGTATATGTATT+AGG - chr7_3:63191687-63191706 Msa1115710:intron 15.0%
!! ATTATGTTGTATATGTATTA+GGG - chr7_3:63191688-63191707 Msa1115710:intron 15.0%
!!! TTTATTTTTTTGACAAGAAA+CGG - chr7_3:63192229-63192248 Msa1115710:intron 15.0%
!! TTCTGTTAATGTAATGATAA+TGG + chr7_3:63190812-63190831 None:intergenic 20.0%
!!! TCTTTTTTTAACTTTTCAGA+TGG - chr7_3:63190877-63190896 Msa1115710:three_prime_UTR 20.0%
!! TGAGAAAAAAACAAAAATTG+AGG + chr7_3:63191206-63191225 None:intergenic 20.0%
!!! TAAAAAGAGTAAAGCTATTT+TGG - chr7_3:63191396-63191415 Msa1115710:CDS 20.0%
!!! TATCTTTGAATGTGTTATTA+TGG - chr7_3:63191476-63191495 Msa1115710:intron 20.0%
!! TACTAATATGATACATTCAA+AGG - chr7_3:63191541-63191560 Msa1115710:intron 20.0%
!!! TCTTAGCTTTAGTTTTTTAA+GGG + chr7_3:63191642-63191661 None:intergenic 20.0%
!!! TTCTTAGCTTTAGTTTTTTA+AGG + chr7_3:63191643-63191662 None:intergenic 20.0%
!!! AAATTTGTTACAGTAAAGTT+TGG + chr7_3:63191800-63191819 None:intergenic 20.0%
!! AAACTTTACTGTAACAAATT+TGG - chr7_3:63191799-63191818 Msa1115710:CDS 20.0%
!!! ATTTTCAGCTCAAAATTTAT+TGG - chr7_3:63191958-63191977 Msa1115710:CDS 20.0%
!!! TTTTCAGCTCAAAATTTATT+GGG - chr7_3:63191959-63191978 Msa1115710:CDS 20.0%
!! TTCTGTTAATGTAATGATAA+TGG + chr7_3:63190812-63190831 None:intergenic 20.0%
!!! TCTTTTTTTAACTTTTCAGA+TGG - chr7_3:63190877-63190896 Msa1115710:three_prime_UTR 20.0%
!! TGAGAAAAAAACAAAAATTG+AGG + chr7_3:63191206-63191225 None:intergenic 20.0%
!!! TAAAAAGAGTAAAGCTATTT+TGG - chr7_3:63191396-63191415 Msa1115710:CDS 20.0%
!!! TATCTTTGAATGTGTTATTA+TGG - chr7_3:63191476-63191495 Msa1115710:intron 20.0%
!! TACTAATATGATACATTCAA+AGG - chr7_3:63191541-63191560 Msa1115710:intron 20.0%
!!! TCTTAGCTTTAGTTTTTTAA+GGG + chr7_3:63191642-63191661 None:intergenic 20.0%
!!! TTCTTAGCTTTAGTTTTTTA+AGG + chr7_3:63191643-63191662 None:intergenic 20.0%
!!! AAATTTGTTACAGTAAAGTT+TGG + chr7_3:63191800-63191819 None:intergenic 20.0%
!! AAACTTTACTGTAACAAATT+TGG - chr7_3:63191799-63191818 Msa1115710:CDS 20.0%
!!! ATTTTCAGCTCAAAATTTAT+TGG - chr7_3:63191958-63191977 Msa1115710:CDS 20.0%
!!! TTTTCAGCTCAAAATTTATT+GGG - chr7_3:63191959-63191978 Msa1115710:CDS 20.0%
! CTGAAAAGTTAAAAAAAGAG+AGG + chr7_3:63190876-63190895 None:intergenic 25.0%
!!! ATTATCTTCATTTTTCTTGC+AGG - chr7_3:63191294-63191313 Msa1115710:CDS 25.0%
!!! TTCTGAAATTCTTCCATTTA+AGG - chr7_3:63191342-63191361 Msa1115710:CDS 25.0%
! AAAAAGCGATAATACATTGA+AGG + chr7_3:63191423-63191442 None:intergenic 25.0%
! TTTACTGTAACAAATTTGGA+TGG - chr7_3:63191803-63191822 Msa1115710:intron 25.0%
! AAATAATGTCTCATTACTCA+AGG + chr7_3:63192178-63192197 None:intergenic 25.0%
! GTTAACCAAATTCACTTTAA+CGG + chr7_3:63192286-63192305 None:intergenic 25.0%
! TTAAAGTGAATTTGGTTAAC+AGG - chr7_3:63192286-63192305 Msa1115710:intron 25.0%
! CTGAAAAGTTAAAAAAAGAG+AGG + chr7_3:63190876-63190895 None:intergenic 25.0%
!!! ATTATCTTCATTTTTCTTGC+AGG - chr7_3:63191294-63191313 Msa1115710:CDS 25.0%
!!! TTCTGAAATTCTTCCATTTA+AGG - chr7_3:63191342-63191361 Msa1115710:CDS 25.0%
! AAAAAGCGATAATACATTGA+AGG + chr7_3:63191423-63191442 None:intergenic 25.0%
! TTTACTGTAACAAATTTGGA+TGG - chr7_3:63191803-63191822 Msa1115710:intron 25.0%
! AAATAATGTCTCATTACTCA+AGG + chr7_3:63192178-63192197 None:intergenic 25.0%
! GTTAACCAAATTCACTTTAA+CGG + chr7_3:63192286-63192305 None:intergenic 25.0%
! TTAAAGTGAATTTGGTTAAC+AGG - chr7_3:63192286-63192305 Msa1115710:intron 25.0%
ACAAATGAAGTTGTATTGTG+TGG + chr7_3:63190739-63190758 None:intergenic 30.0%
GTAAGTATCATCATGAATGA+AGG + chr7_3:63190939-63190958 None:intergenic 30.0%
ATTTCATCATCATCAACAAG+AGG + chr7_3:63191013-63191032 None:intergenic 30.0%
!! TTGTTGATGATGATGAAATC+TGG - chr7_3:63191014-63191033 Msa1115710:CDS 30.0%
AGAAGATCTTGAGAAATCTT+GGG + chr7_3:63191142-63191161 None:intergenic 30.0%
AAGAAGATCTTGAGAAATCT+TGG + chr7_3:63191143-63191162 None:intergenic 30.0%
AAAAATTGAGGTAGTAACCT+TGG + chr7_3:63191194-63191213 None:intergenic 30.0%
CTTCGATTTCTATCCTTAAA+TGG + chr7_3:63191358-63191377 None:intergenic 30.0%
CATTTAAGGATAGAAATCGA+AGG - chr7_3:63191356-63191375 Msa1115710:CDS 30.0%
TCCATGTTTCTTGAACAATT+GGG + chr7_3:63191755-63191774 None:intergenic 30.0%
ATCCATGTTTCTTGAACAAT+TGG + chr7_3:63191756-63191775 None:intergenic 30.0%
GATCTTCTATTACTTCTTTC+AGG + chr7_3:63191923-63191942 None:intergenic 30.0%
AAATTCTGAGTCAAATCACA+GGG - chr7_3:63191990-63192009 Msa1115710:intron 30.0%
AGAATTGAAGGAAAAGAGTA+AGG - chr7_3:63192108-63192127 Msa1115710:CDS 30.0%
GAATTGAAGGAAAAGAGTAA+GGG - chr7_3:63192109-63192128 Msa1115710:CDS 30.0%
TGATTCCGTTAAAGTGAATT+TGG - chr7_3:63192278-63192297 Msa1115710:intron 30.0%
! TTTTTCTTCTAAGTGAGAGA+AGG - chr7_3:63192389-63192408 Msa1115710:intron 30.0%
ACAAATGAAGTTGTATTGTG+TGG + chr7_3:63190739-63190758 None:intergenic 30.0%
GTAAGTATCATCATGAATGA+AGG + chr7_3:63190939-63190958 None:intergenic 30.0%
ATTTCATCATCATCAACAAG+AGG + chr7_3:63191013-63191032 None:intergenic 30.0%
!! TTGTTGATGATGATGAAATC+TGG - chr7_3:63191014-63191033 Msa1115710:CDS 30.0%
AGAAGATCTTGAGAAATCTT+GGG + chr7_3:63191142-63191161 None:intergenic 30.0%
AAGAAGATCTTGAGAAATCT+TGG + chr7_3:63191143-63191162 None:intergenic 30.0%
AAAAATTGAGGTAGTAACCT+TGG + chr7_3:63191194-63191213 None:intergenic 30.0%
CTTCGATTTCTATCCTTAAA+TGG + chr7_3:63191358-63191377 None:intergenic 30.0%
CATTTAAGGATAGAAATCGA+AGG - chr7_3:63191356-63191375 Msa1115710:CDS 30.0%
TCCATGTTTCTTGAACAATT+GGG + chr7_3:63191755-63191774 None:intergenic 30.0%
ATCCATGTTTCTTGAACAAT+TGG + chr7_3:63191756-63191775 None:intergenic 30.0%
GATCTTCTATTACTTCTTTC+AGG + chr7_3:63191923-63191942 None:intergenic 30.0%
AAATTCTGAGTCAAATCACA+GGG - chr7_3:63191990-63192009 Msa1115710:intron 30.0%
AGAATTGAAGGAAAAGAGTA+AGG - chr7_3:63192108-63192127 Msa1115710:CDS 30.0%
GAATTGAAGGAAAAGAGTAA+GGG - chr7_3:63192109-63192128 Msa1115710:CDS 30.0%
TGATTCCGTTAAAGTGAATT+TGG - chr7_3:63192278-63192297 Msa1115710:intron 30.0%
! TTTTTCTTCTAAGTGAGAGA+AGG - chr7_3:63192389-63192408 Msa1115710:intron 30.0%
CTCAAAAAACAACACCTCTT+TGG - chr7_3:63190777-63190796 Msa1115710:three_prime_UTR 35.0%
TGGAACCAGAAAACATTGAT+TGG - chr7_3:63190897-63190916 Msa1115710:three_prime_UTR 35.0%
! GGAACCAGAAAACATTGATT+GGG - chr7_3:63190898-63190917 Msa1115710:three_prime_UTR 35.0%
! TTGTCCCAATCAATGTTTTC+TGG + chr7_3:63190905-63190924 None:intergenic 35.0%
AGTATCATCATGAATGAAGG+TGG + chr7_3:63190936-63190955 None:intergenic 35.0%
! GTCTAGCTCAATTTCTTTGA+TGG - chr7_3:63191070-63191089 Msa1115710:CDS 35.0%
GCAGGCAAAGTTATTAAGAT+TGG - chr7_3:63191312-63191331 Msa1115710:CDS 35.0%
TGGAAGAATTTCAGAAAAGC+TGG + chr7_3:63191338-63191357 None:intergenic 35.0%
ACCCAATTGTTCAAGAAACA+TGG - chr7_3:63191751-63191770 Msa1115710:intron 35.0%
ACTGTAACAAATTTGGATGG+TGG - chr7_3:63191806-63191825 Msa1115710:intron 35.0%
CTGTAACAAATTTGGATGGT+GGG - chr7_3:63191807-63191826 Msa1115710:intron 35.0%
! TTTGACTTTGACCTCAACAA+CGG + chr7_3:63191851-63191870 None:intergenic 35.0%
CTTCTATTACTTCTTTCAGG+AGG + chr7_3:63191920-63191939 None:intergenic 35.0%
TCAGCTCAAAATTTATTGGG+TGG - chr7_3:63191962-63191981 Msa1115710:CDS 35.0%
TCAAAATTTATTGGGTGGCA+GGG - chr7_3:63191967-63191986 Msa1115710:CDS 35.0%
GAAATTCTGAGTCAAATCAC+AGG - chr7_3:63191989-63192008 Msa1115710:CDS 35.0%
! TGGAGTGTTAGAAGAATTGA+AGG - chr7_3:63192096-63192115 Msa1115710:CDS 35.0%
AGTTGCATATAAGAGAGTTC+TGG - chr7_3:63192345-63192364 Msa1115710:intron 35.0%
!! AAGTGAGAGAAGGTGTTAAA+TGG - chr7_3:63192399-63192418 Msa1115710:intron 35.0%
!! AGTGAGAGAAGGTGTTAAAT+GGG - chr7_3:63192400-63192419 Msa1115710:intron 35.0%
CTCAAAAAACAACACCTCTT+TGG - chr7_3:63190777-63190796 Msa1115710:three_prime_UTR 35.0%
TGGAACCAGAAAACATTGAT+TGG - chr7_3:63190897-63190916 Msa1115710:three_prime_UTR 35.0%
! GGAACCAGAAAACATTGATT+GGG - chr7_3:63190898-63190917 Msa1115710:three_prime_UTR 35.0%
! TTGTCCCAATCAATGTTTTC+TGG + chr7_3:63190905-63190924 None:intergenic 35.0%
AGTATCATCATGAATGAAGG+TGG + chr7_3:63190936-63190955 None:intergenic 35.0%
! GTCTAGCTCAATTTCTTTGA+TGG - chr7_3:63191070-63191089 Msa1115710:CDS 35.0%
GCAGGCAAAGTTATTAAGAT+TGG - chr7_3:63191312-63191331 Msa1115710:CDS 35.0%
TGGAAGAATTTCAGAAAAGC+TGG + chr7_3:63191338-63191357 None:intergenic 35.0%
ACCCAATTGTTCAAGAAACA+TGG - chr7_3:63191751-63191770 Msa1115710:intron 35.0%
ACTGTAACAAATTTGGATGG+TGG - chr7_3:63191806-63191825 Msa1115710:intron 35.0%
CTGTAACAAATTTGGATGGT+GGG - chr7_3:63191807-63191826 Msa1115710:intron 35.0%
! TTTGACTTTGACCTCAACAA+CGG + chr7_3:63191851-63191870 None:intergenic 35.0%
CTTCTATTACTTCTTTCAGG+AGG + chr7_3:63191920-63191939 None:intergenic 35.0%
TCAGCTCAAAATTTATTGGG+TGG - chr7_3:63191962-63191981 Msa1115710:CDS 35.0%
TCAAAATTTATTGGGTGGCA+GGG - chr7_3:63191967-63191986 Msa1115710:CDS 35.0%
GAAATTCTGAGTCAAATCAC+AGG - chr7_3:63191989-63192008 Msa1115710:CDS 35.0%
! TGGAGTGTTAGAAGAATTGA+AGG - chr7_3:63192096-63192115 Msa1115710:CDS 35.0%
AGTTGCATATAAGAGAGTTC+TGG - chr7_3:63192345-63192364 Msa1115710:intron 35.0%
!! AAGTGAGAGAAGGTGTTAAA+TGG - chr7_3:63192399-63192418 Msa1115710:intron 35.0%
!! AGTGAGAGAAGGTGTTAAAT+GGG - chr7_3:63192400-63192419 Msa1115710:intron 35.0%
AATGGTTGAAACAGCCAAAG+AGG + chr7_3:63190794-63190813 None:intergenic 40.0%
ATCATCAACAAGAGGCTCAT+TGG + chr7_3:63191005-63191024 None:intergenic 40.0%
!!! GAAATCTGGTTTTGCACTCA+AGG - chr7_3:63191028-63191047 Msa1115710:CDS 40.0%
ATTGGTCGTGGTTATAGTTG+CGG + chr7_3:63191170-63191189 None:intergenic 40.0%
TATAACCACGACCAATTCCA+AGG - chr7_3:63191174-63191193 Msa1115710:CDS 40.0%
TGAGGTAGTAACCTTGGAAT+TGG + chr7_3:63191188-63191207 None:intergenic 40.0%
! GGATTAAACTGACTCACAGA+AGG + chr7_3:63191514-63191533 None:intergenic 40.0%
TCGTTCCTAAATGTGTGACA+CGG + chr7_3:63191604-63191623 None:intergenic 40.0%
GGAAAATCCTTCAGCTGTTA+AGG - chr7_3:63191709-63191728 Msa1115710:intron 40.0%
TCACAATCCTTAACAGCTGA+AGG + chr7_3:63191719-63191738 None:intergenic 40.0%
CTTGAACAATTGGGTCTTCT+AGG + chr7_3:63191746-63191765 None:intergenic 40.0%
CTCAAAATTTATTGGGTGGC+AGG - chr7_3:63191966-63191985 Msa1115710:CDS 40.0%
!! GGTTTTGCTCTGAATTGAAG+AGG - chr7_3:63192011-63192030 Msa1115710:intron 40.0%
AATTGAAGAGGCTAGCAACA+AGG - chr7_3:63192023-63192042 Msa1115710:intron 40.0%
AGGAAGGGTTCTACTAAGAA+AGG - chr7_3:63192043-63192062 Msa1115710:intron 40.0%
AAGGGTTCTACTAAGAAAGG+AGG - chr7_3:63192046-63192065 Msa1115710:intron 40.0%
AGGGTTCTACTAAGAAAGGA+GGG - chr7_3:63192047-63192066 Msa1115710:intron 40.0%
GAGAAGGGCTCAAATTCAAA+TGG - chr7_3:63192076-63192095 Msa1115710:intron 40.0%
! AGTTCTGGTCTAGAACAATC+TGG - chr7_3:63192360-63192379 Msa1115710:intron 40.0%
AATGGTTGAAACAGCCAAAG+AGG + chr7_3:63190794-63190813 None:intergenic 40.0%
ATCATCAACAAGAGGCTCAT+TGG + chr7_3:63191005-63191024 None:intergenic 40.0%
!!! GAAATCTGGTTTTGCACTCA+AGG - chr7_3:63191028-63191047 Msa1115710:CDS 40.0%
ATTGGTCGTGGTTATAGTTG+CGG + chr7_3:63191170-63191189 None:intergenic 40.0%
TATAACCACGACCAATTCCA+AGG - chr7_3:63191174-63191193 Msa1115710:CDS 40.0%
TGAGGTAGTAACCTTGGAAT+TGG + chr7_3:63191188-63191207 None:intergenic 40.0%
! GGATTAAACTGACTCACAGA+AGG + chr7_3:63191514-63191533 None:intergenic 40.0%
TCGTTCCTAAATGTGTGACA+CGG + chr7_3:63191604-63191623 None:intergenic 40.0%
GGAAAATCCTTCAGCTGTTA+AGG - chr7_3:63191709-63191728 Msa1115710:intron 40.0%
TCACAATCCTTAACAGCTGA+AGG + chr7_3:63191719-63191738 None:intergenic 40.0%
CTTGAACAATTGGGTCTTCT+AGG + chr7_3:63191746-63191765 None:intergenic 40.0%
CTCAAAATTTATTGGGTGGC+AGG - chr7_3:63191966-63191985 Msa1115710:CDS 40.0%
!! GGTTTTGCTCTGAATTGAAG+AGG - chr7_3:63192011-63192030 Msa1115710:intron 40.0%
AATTGAAGAGGCTAGCAACA+AGG - chr7_3:63192023-63192042 Msa1115710:intron 40.0%
AGGAAGGGTTCTACTAAGAA+AGG - chr7_3:63192043-63192062 Msa1115710:intron 40.0%
AAGGGTTCTACTAAGAAAGG+AGG - chr7_3:63192046-63192065 Msa1115710:intron 40.0%
AGGGTTCTACTAAGAAAGGA+GGG - chr7_3:63192047-63192066 Msa1115710:intron 40.0%
GAGAAGGGCTCAAATTCAAA+TGG - chr7_3:63192076-63192095 Msa1115710:intron 40.0%
! AGTTCTGGTCTAGAACAATC+TGG - chr7_3:63192360-63192379 Msa1115710:intron 40.0%
GCAGAGAGATCAACCCATTT+GGG + chr7_3:63190977-63190996 None:intergenic 45.0%
AGCAGAGAGATCAACCCATT+TGG + chr7_3:63190978-63190997 None:intergenic 45.0%
ATCAACAAGAGGCTCATTGG+AGG + chr7_3:63191002-63191021 None:intergenic 45.0%
AAGGTGAGGCTTTCTTCAAC+AGG - chr7_3:63191047-63191066 Msa1115710:CDS 45.0%
AGGTGAGGCTTTCTTCAACA+GGG - chr7_3:63191048-63191067 Msa1115710:CDS 45.0%
TTGGTCGTGGTTATAGTTGC+GGG + chr7_3:63191169-63191188 None:intergenic 45.0%
AGTAACCTTGGAATTGGTCG+TGG + chr7_3:63191182-63191201 None:intergenic 45.0%
!! CAACGGCTTCTTTAGGTTGT+TGG + chr7_3:63191834-63191853 None:intergenic 45.0%
ACCTAAAGAAGCCGTTGTTG+AGG - chr7_3:63191837-63191856 Msa1115710:intron 45.0%
ACCTCAACAACGGCTTCTTT+AGG + chr7_3:63191841-63191860 None:intergenic 45.0%
AAGAGGCTAGCAACAAGGAA+GGG - chr7_3:63192028-63192047 Msa1115710:intron 45.0%
GGGTTCTACTAAGAAAGGAG+GGG - chr7_3:63192048-63192067 Msa1115710:intron 45.0%
GGTTCTACTAAGAAAGGAGG+GGG - chr7_3:63192049-63192068 Msa1115710:intron 45.0%
GTTCTACTAAGAAAGGAGGG+GGG - chr7_3:63192050-63192069 Msa1115710:intron 45.0%
AGAGTAAGGGACGCAAAGAA+AGG - chr7_3:63192122-63192141 Msa1115710:CDS 45.0%
GAGTAAGGGACGCAAAGAAA+GGG - chr7_3:63192123-63192142 Msa1115710:CDS 45.0%
CCTTCCTTGACAACAAGCAA+GGG + chr7_3:63192151-63192170 None:intergenic 45.0%
!! CCTTGCTTGTTGTCAAGGAA+GGG - chr7_3:63192149-63192168 Msa1115710:CDS 45.0%
! GGTCTAGAACAATCTGGACT+AGG - chr7_3:63192366-63192385 Msa1115710:intron 45.0%
GCAGAGAGATCAACCCATTT+GGG + chr7_3:63190977-63190996 None:intergenic 45.0%
AGCAGAGAGATCAACCCATT+TGG + chr7_3:63190978-63190997 None:intergenic 45.0%
ATCAACAAGAGGCTCATTGG+AGG + chr7_3:63191002-63191021 None:intergenic 45.0%
AAGGTGAGGCTTTCTTCAAC+AGG - chr7_3:63191047-63191066 Msa1115710:CDS 45.0%
AGGTGAGGCTTTCTTCAACA+GGG - chr7_3:63191048-63191067 Msa1115710:CDS 45.0%
TTGGTCGTGGTTATAGTTGC+GGG + chr7_3:63191169-63191188 None:intergenic 45.0%
AGTAACCTTGGAATTGGTCG+TGG + chr7_3:63191182-63191201 None:intergenic 45.0%
!! CAACGGCTTCTTTAGGTTGT+TGG + chr7_3:63191834-63191853 None:intergenic 45.0%
ACCTAAAGAAGCCGTTGTTG+AGG - chr7_3:63191837-63191856 Msa1115710:intron 45.0%
ACCTCAACAACGGCTTCTTT+AGG + chr7_3:63191841-63191860 None:intergenic 45.0%
AAGAGGCTAGCAACAAGGAA+GGG - chr7_3:63192028-63192047 Msa1115710:intron 45.0%
GGGTTCTACTAAGAAAGGAG+GGG - chr7_3:63192048-63192067 Msa1115710:intron 45.0%
GGTTCTACTAAGAAAGGAGG+GGG - chr7_3:63192049-63192068 Msa1115710:intron 45.0%
GTTCTACTAAGAAAGGAGGG+GGG - chr7_3:63192050-63192069 Msa1115710:intron 45.0%
AGAGTAAGGGACGCAAAGAA+AGG - chr7_3:63192122-63192141 Msa1115710:CDS 45.0%
GAGTAAGGGACGCAAAGAAA+GGG - chr7_3:63192123-63192142 Msa1115710:CDS 45.0%
CCTTCCTTGACAACAAGCAA+GGG + chr7_3:63192151-63192170 None:intergenic 45.0%
!! CCTTGCTTGTTGTCAAGGAA+GGG - chr7_3:63192149-63192168 Msa1115710:CDS 45.0%
! GGTCTAGAACAATCTGGACT+AGG - chr7_3:63192366-63192385 Msa1115710:intron 45.0%
!!! CTGGTTTTGCACTCAAGGTG+AGG - chr7_3:63191033-63191052 Msa1115710:CDS 50.0%
CGAGACCGTGTCACACATTT+AGG - chr7_3:63191596-63191615 Msa1115710:intron 50.0%
GAAGAGGCTAGCAACAAGGA+AGG - chr7_3:63192027-63192046 Msa1115710:intron 50.0%
AAAGGAGGGGGGAATGAGAA+GGG - chr7_3:63192061-63192080 Msa1115710:intron 50.0%
!! GGTACCCTTGCTTGTTGTCA+AGG - chr7_3:63192144-63192163 Msa1115710:CDS 50.0%
!! CCCTTGCTTGTTGTCAAGGA+AGG - chr7_3:63192148-63192167 Msa1115710:CDS 50.0%
CCCTTCCTTGACAACAAGCA+AGG + chr7_3:63192152-63192171 None:intergenic 50.0%
!!! CTGGTTTTGCACTCAAGGTG+AGG - chr7_3:63191033-63191052 Msa1115710:CDS 50.0%
CGAGACCGTGTCACACATTT+AGG - chr7_3:63191596-63191615 Msa1115710:intron 50.0%
GAAGAGGCTAGCAACAAGGA+AGG - chr7_3:63192027-63192046 Msa1115710:intron 50.0%
AAAGGAGGGGGGAATGAGAA+GGG - chr7_3:63192061-63192080 Msa1115710:intron 50.0%
!! GGTACCCTTGCTTGTTGTCA+AGG - chr7_3:63192144-63192163 Msa1115710:CDS 50.0%
!! CCCTTGCTTGTTGTCAAGGA+AGG - chr7_3:63192148-63192167 Msa1115710:CDS 50.0%
CCCTTCCTTGACAACAAGCA+AGG + chr7_3:63192152-63192171 None:intergenic 50.0%
AGAACTTCGACGCGCCCAAA+TGG - chr7_3:63190960-63190979 Msa1115710:CDS 55.0%
GAACTTCGACGCGCCCAAAT+GGG - chr7_3:63190961-63190980 Msa1115710:CDS 55.0%
GAAAGGAGGGGGGAATGAGA+AGG - chr7_3:63192060-63192079 Msa1115710:intron 55.0%
AGAACTTCGACGCGCCCAAA+TGG - chr7_3:63190960-63190979 Msa1115710:CDS 55.0%
GAACTTCGACGCGCCCAAAT+GGG - chr7_3:63190961-63190980 Msa1115710:CDS 55.0%
GAAAGGAGGGGGGAATGAGA+AGG - chr7_3:63192060-63192079 Msa1115710:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63190661 63192475 63190661 ID=Msa1115710;Name=Msa1115710
chr7_3 mRNA 63190661 63192475 63190661 ID=Msa1115710-mRNA-1;Parent=Msa1115710;Name=Msa1115710-mRNA-1;_AED=0.13;_eAED=0.13;_QI=66|1|1|1|0.75|0.8|5|295|251
chr7_3 exon 63190661 63191427 63190661 ID=Msa1115710-mRNA-1:exon:14824;Parent=Msa1115710-mRNA-1
chr7_3 exon 63191759 63191820 63191759 ID=Msa1115710-mRNA-1:exon:14823;Parent=Msa1115710-mRNA-1
chr7_3 exon 63191941 63192008 63191941 ID=Msa1115710-mRNA-1:exon:14822;Parent=Msa1115710-mRNA-1
chr7_3 exon 63192087 63192240 63192087 ID=Msa1115710-mRNA-1:exon:14821;Parent=Msa1115710-mRNA-1
chr7_3 exon 63192410 63192475 63192410 ID=Msa1115710-mRNA-1:exon:14820;Parent=Msa1115710-mRNA-1
chr7_3 five_prime_UTR 63192410 63192475 63192410 ID=Msa1115710-mRNA-1:five_prime_utr;Parent=Msa1115710-mRNA-1
chr7_3 CDS 63192087 63192240 63192087 ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1
chr7_3 CDS 63191941 63192008 63191941 ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1
chr7_3 CDS 63191759 63191820 63191759 ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1
chr7_3 CDS 63190956 63191427 63190956 ID=Msa1115710-mRNA-1:cds;Parent=Msa1115710-mRNA-1
chr7_3 three_prime_UTR 63190661 63190955 63190661 ID=Msa1115710-mRNA-1:three_prime_utr;Parent=Msa1115710-mRNA-1
Gene Sequence

>Msa1115710

ATGGAACCAGAAAACATTGATTGGGACAACATCGATTCCACCTTCATTCATGATGATACTTACGAGAACTTCGACGCGCCCAAATGGGTTGATCTCTCTGCTGCCTCCAATGAGCCTCTTGTTGATGATGATGAAATCTGGTTTTGCACTCAAGATTGCAAACATCCCAAGATTTCTCAAGATCTTCTTAAACCCGCAACTATAACCACGACCAATTCCAAGGCAAAGTTATTAAGATTGGCCAGCTTTTCTGAAATTCTTCCATTTAAGGATAGAAATCGAAGGGAAAATCCTTCAGCTGTTAAGGATTGTGACAAGCCTAGAAGACCCAATTGTTCAAGAAACATGGATGAAGACAATGAGAATAAAAATCCAAACTTTACTGTAACAAATTTGGATGGTGGGACCAACAACCTAAAGAAGCCGTTGTTGAGGTCAAAGTCAAACACTAAAAGAGACAATTTGAAAGAGTTGAATGATTCAAAAGAGTGTCCTCCTGAAAGAAGTAATAGAAGATCAAAACTGAAGAGTACATTTTCAGCTCAAAATTTATTGGGTGGCAGGGAAATTCTGAGTCAAATCACAGGGTTTTGCTCTGAATTGAAGAGGCTAGCAACAAGGAAGGGTTCTACTAAGAAAGGAGGGGGGAATGAGAAGGGCTCAAATTCAAATGGAGTGTTAGAAGAATTGAAGGAAAAGAGTAAGGGACGCAAAGAAAGGGTACCCTTGCTTGTTGTCAAGGAAGGGACACCTTGA

Protein sequence

>Msa1115710

MEPENIDWDNIDSTFIHDDTYENFDAPKWVDLSAASNEPLVDDDEIWFCTQDCKHPKISQDLLKPATITTTNSKAKLLRLASFSEILPFKDRNRRENPSAVKDCDKPRRPNCSRNMDEDNENKNPNFTVTNLDGGTNNLKKPLLRSKSNTKRDNLKELNDSKECPPERSNRRSKLKSTFSAQNLLGGREILSQITGFCSELKRLATRKGSTKKGGGNEKGSNSNGVLEELKEKSKGRKERVPLLVVKEGTP*