Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337480 | XP_013465138.3 | 94.697 | 396 | 19 | 1 | 1 | 396 | 1 | 394 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337480 | sp|Q6DR04|RTNLQ_ARATH | 49.180 | 366 | 166 | 7 | 1 | 351 | 18 | 378 | 6.08e-102 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0337480 | 0.820242 | 7.606883e-53 | -8.615850e-47 |
| Msa0016040 | Msa0337480 | 0.837566 | 4.819204e-57 | -8.615850e-47 |
| Msa0025580 | Msa0337480 | 0.809648 | 1.705804e-50 | -8.615850e-47 |
| Msa0027280 | Msa0337480 | 0.802968 | 4.360619e-49 | -8.615850e-47 |
| Msa0035140 | Msa0337480 | 0.824994 | 5.969943e-54 | -8.615850e-47 |
| Msa0048510 | Msa0337480 | 0.841815 | 3.779573e-58 | -8.615850e-47 |
| Msa0052260 | Msa0337480 | 0.809378 | 1.949286e-50 | -8.615850e-47 |
| Msa0053070 | Msa0337480 | 0.821453 | 4.006118e-53 | -8.615850e-47 |
| Msa0056180 | Msa0337480 | 0.801300 | 9.609857e-49 | -8.615850e-47 |
| Msa0065020 | Msa0337480 | 0.804142 | 2.489197e-49 | -8.615850e-47 |
| Msa0067060 | Msa0337480 | 0.811434 | 7.014111e-51 | -8.615850e-47 |
| Msa0068150 | Msa0337480 | 0.800195 | 1.615053e-48 | -8.615850e-47 |
| Msa0077560 | Msa0337480 | 0.809088 | 2.248703e-50 | -8.615850e-47 |
| Msa0081980 | Msa0337480 | 0.804801 | 1.814438e-49 | -8.615850e-47 |
| Msa0090400 | Msa0337480 | 0.804033 | 2.622589e-49 | -8.615850e-47 |
| Msa0091360 | Msa0337480 | 0.807722 | 4.399304e-50 | -8.615850e-47 |
| Msa0094780 | Msa0337480 | 0.812712 | 3.692481e-51 | -8.615850e-47 |
| Msa0115550 | Msa0337480 | 0.823457 | 1.370666e-53 | -8.615850e-47 |
| Msa0121330 | Msa0337480 | 0.800918 | 1.150411e-48 | -8.615850e-47 |
| Msa0140280 | Msa0337480 | 0.802676 | 5.011216e-49 | -8.615850e-47 |
| Msa0140380 | Msa0337480 | 0.833992 | 3.876577e-56 | -8.615850e-47 |
| Msa0159590 | Msa0337480 | 0.818765 | 1.652344e-52 | -8.615850e-47 |
| Msa0174290 | Msa0337480 | 0.813549 | 2.419880e-51 | -8.615850e-47 |
| Msa0190570 | Msa0337480 | 0.826222 | 3.053274e-54 | -8.615850e-47 |
| Msa0200050 | Msa0337480 | 0.835545 | 1.577107e-56 | -8.615850e-47 |
| Msa0209980 | Msa0337480 | 0.824119 | 9.592812e-54 | -8.615850e-47 |
| Msa0213030 | Msa0337480 | 0.843241 | 1.581033e-58 | -8.615850e-47 |
| Msa0225860 | Msa0337480 | 0.813818 | 2.111759e-51 | -8.615850e-47 |
| Msa0232760 | Msa0337480 | 0.850224 | 1.949948e-60 | -8.615850e-47 |
| Msa0233070 | Msa0337480 | 0.802974 | 4.348520e-49 | -8.615850e-47 |
| Msa0242590 | Msa0337480 | 0.836673 | 8.152296e-57 | -8.615850e-47 |
| Msa0260510 | Msa0337480 | 0.820268 | 7.503032e-53 | -8.615850e-47 |
| Msa0280790 | Msa0337480 | 0.829713 | 4.413964e-55 | -8.615850e-47 |
| Msa0298470 | Msa0337480 | 0.843685 | 1.203289e-58 | -8.615850e-47 |
| Msa0337480 | Msa0343010 | 0.810458 | 1.140967e-50 | -8.615850e-47 |
| Msa0337480 | Msa0353950 | 0.848568 | 5.640867e-60 | -8.615850e-47 |
| Msa0337480 | Msa0367150 | 0.811312 | 7.455644e-51 | -8.615850e-47 |
| Msa0337480 | Msa0367520 | 0.817547 | 3.116921e-52 | -8.615850e-47 |
| Msa0337480 | Msa0368860 | 0.814304 | 1.649617e-51 | -8.615850e-47 |
| Msa0337480 | Msa0373500 | 0.815437 | 9.247716e-52 | -8.615850e-47 |
| Msa0337480 | Msa0380670 | 0.806527 | 7.875929e-50 | -8.615850e-47 |
| Msa0337480 | Msa0383000 | 0.845239 | 4.598257e-59 | -8.615850e-47 |
| Msa0337480 | Msa0400950 | 0.819915 | 9.036795e-53 | -8.615850e-47 |
| Msa0337480 | Msa0416160 | 0.814644 | 1.387445e-51 | -8.615850e-47 |
| Msa0337480 | Msa0421150 | 0.803273 | 3.771807e-49 | -8.615850e-47 |
| Msa0337480 | Msa0430300 | 0.801967 | 7.013902e-49 | -8.615850e-47 |
| Msa0337480 | Msa0433150 | 0.842872 | 1.982722e-58 | -8.615850e-47 |
| Msa0337480 | Msa0443410 | 0.805480 | 1.308286e-49 | -8.615850e-47 |
| Msa0337480 | Msa0447750 | 0.834563 | 2.787689e-56 | -8.615850e-47 |
| Msa0337480 | Msa0462780 | 0.818769 | 1.648801e-52 | -8.615850e-47 |
| Msa0337480 | Msa0481890 | 0.825433 | 4.701414e-54 | -8.615850e-47 |
| Msa0337480 | Msa0495550 | 0.826708 | 2.339258e-54 | -8.615850e-47 |
| Msa0337480 | Msa0524520 | 0.826068 | 3.322937e-54 | -8.615850e-47 |
| Msa0337480 | Msa0531960 | 0.814955 | 1.183663e-51 | -8.615850e-47 |
| Msa0337480 | Msa0534100 | 0.803256 | 3.802436e-49 | -8.615850e-47 |
| Msa0337480 | Msa0563740 | 0.811156 | 8.059659e-51 | -8.615850e-47 |
| Msa0337480 | Msa0567170 | 0.818576 | 1.824140e-52 | -8.615850e-47 |
| Msa0337480 | Msa0571620 | 0.811916 | 5.510488e-51 | -8.615850e-47 |
| Msa0337480 | Msa0577280 | 0.802421 | 5.656085e-49 | -8.615850e-47 |
| Msa0337480 | Msa0577330 | 0.802305 | 5.976774e-49 | -8.615850e-47 |
| Msa0337480 | Msa0577450 | 0.828643 | 8.019962e-55 | -8.615850e-47 |
| Msa0337480 | Msa0577820 | 0.830288 | 3.196083e-55 | -8.615850e-47 |
| Msa0337480 | Msa0580200 | 0.820759 | 5.786906e-53 | -8.615850e-47 |
| Msa0337480 | Msa0580370 | 0.807609 | 4.648505e-50 | -8.615850e-47 |
| Msa0337480 | Msa0580810 | 0.804074 | 2.571915e-49 | -8.615850e-47 |
| Msa0337480 | Msa0590200 | 0.838934 | 2.141273e-57 | -8.615850e-47 |
| Msa0337480 | Msa0593400 | 0.824659 | 7.160914e-54 | -8.615850e-47 |
| Msa0337480 | Msa0606100 | 0.831061 | 2.065998e-55 | -8.615850e-47 |
| Msa0337480 | Msa0607800 | 0.817035 | 4.062409e-52 | -8.615850e-47 |
| Msa0337480 | Msa0621710 | 0.857506 | 1.558260e-62 | -8.615850e-47 |
| Msa0337480 | Msa0647050 | 0.807484 | 4.941608e-50 | -8.615850e-47 |
| Msa0337480 | Msa0648040 | 0.801390 | 9.210328e-49 | -8.615850e-47 |
| Msa0337480 | Msa0657700 | 0.833135 | 6.344642e-56 | -8.615850e-47 |
| Msa0337480 | Msa0666700 | 0.838425 | 2.898347e-57 | -8.615850e-47 |
| Msa0337480 | Msa0668900 | 0.839577 | 1.458140e-57 | -8.615850e-47 |
| Msa0337480 | Msa0683320 | 0.814756 | 1.310045e-51 | -8.615850e-47 |
| Msa0337480 | Msa0688910 | 0.812228 | 4.710656e-51 | -8.615850e-47 |
| Msa0337480 | Msa0690740 | 0.801031 | 1.090930e-48 | -8.615850e-47 |
| Msa0337480 | Msa0698730 | 0.810908 | 9.123398e-51 | -8.615850e-47 |
| Msa0337480 | Msa0702810 | 0.831172 | 1.940306e-55 | -8.615850e-47 |
| Msa0337480 | Msa0703600 | 0.808841 | 2.539972e-50 | -8.615850e-47 |
| Msa0337480 | Msa0709200 | 0.810179 | 1.311112e-50 | -8.615850e-47 |
| Msa0337480 | Msa0709440 | 0.827071 | 1.914967e-54 | -8.615850e-47 |
| Msa0337480 | Msa0714520 | 0.802066 | 6.691111e-49 | -8.615850e-47 |
| Msa0337480 | Msa0714790 | 0.820466 | 6.759404e-53 | -8.615850e-47 |
| Msa0337480 | Msa0722220 | 0.804320 | 2.285893e-49 | -8.615850e-47 |
| Msa0337480 | Msa0735780 | 0.855690 | 5.327826e-62 | -8.615850e-47 |
| Msa0337480 | Msa0740710 | 0.810539 | 1.096396e-50 | -8.615850e-47 |
| Msa0337480 | Msa0743440 | 0.847766 | 9.393614e-60 | -8.615850e-47 |
| Msa0337480 | Msa0745720 | 0.809008 | 2.339541e-50 | -8.615850e-47 |
| Msa0337480 | Msa0747740 | 0.821874 | 3.201580e-53 | -8.615850e-47 |
| Msa0337480 | Msa0755760 | 0.843860 | 1.080792e-58 | -8.615850e-47 |
| Msa0337480 | Msa0756590 | 0.815284 | 1.000512e-51 | -8.615850e-47 |
| Msa0337480 | Msa0756820 | 0.809502 | 1.833185e-50 | -8.615850e-47 |
| Msa0337480 | Msa0758650 | 0.847309 | 1.254540e-59 | -8.615850e-47 |
| Msa0337480 | Msa0761670 | 0.837446 | 5.172429e-57 | -8.615850e-47 |
| Msa0337480 | Msa0763550 | 0.808032 | 3.779862e-50 | -8.615850e-47 |
| Msa0337480 | Msa0773630 | 0.811154 | 8.070011e-51 | -8.615850e-47 |
| Msa0337480 | Msa0777750 | 0.823851 | 1.108866e-53 | -8.615850e-47 |
| Msa0337480 | Msa0778550 | 0.800599 | 1.336517e-48 | -8.615850e-47 |
| Msa0337480 | Msa0795870 | 0.810287 | 1.242547e-50 | -8.615850e-47 |
| Msa0337480 | Msa0800660 | 0.817473 | 3.239071e-52 | -8.615850e-47 |
| Msa0337480 | Msa0818880 | 0.818362 | 2.039371e-52 | -8.615850e-47 |
| Msa0337480 | Msa0824450 | 0.805365 | 1.382558e-49 | -8.615850e-47 |
| Msa0337480 | Msa0828970 | 0.833574 | 4.932225e-56 | -8.615850e-47 |
| Msa0337480 | Msa0833650 | 0.808989 | 2.361432e-50 | -8.615850e-47 |
| Msa0337480 | Msa0835900 | 0.808599 | 2.861068e-50 | -8.615850e-47 |
| Msa0337480 | Msa0836150 | 0.802443 | 5.597705e-49 | -8.615850e-47 |
| Msa0337480 | Msa0843050 | 0.809200 | 2.128496e-50 | -8.615850e-47 |
| Msa0337480 | Msa0863620 | 0.859336 | 4.438124e-63 | -8.615850e-47 |
| Msa0337480 | Msa0867110 | 0.809216 | 2.111444e-50 | -8.615850e-47 |
| Msa0337480 | Msa0888790 | 0.830576 | 2.717555e-55 | -8.615850e-47 |
| Msa0337480 | Msa0915520 | 0.832840 | 7.515186e-56 | -8.615850e-47 |
| Msa0337480 | Msa0931590 | 0.862826 | 3.848969e-64 | -8.615850e-47 |
| Msa0337480 | Msa0966320 | 0.810553 | 1.088650e-50 | -8.615850e-47 |
| Msa0337480 | Msa0980990 | 0.800308 | 1.531985e-48 | -8.615850e-47 |
| Msa0337480 | Msa0997920 | 0.808784 | 2.612907e-50 | -8.615850e-47 |
| Msa0337480 | Msa1034810 | 0.839505 | 1.522004e-57 | -8.615850e-47 |
| Msa0337480 | Msa1035570 | 0.826218 | 3.060714e-54 | -8.615850e-47 |
| Msa0337480 | Msa1035610 | 0.818311 | 2.094310e-52 | -8.615850e-47 |
| Msa0337480 | Msa1035650 | 0.809036 | 2.307376e-50 | -8.615850e-47 |
| Msa0337480 | Msa1037540 | 0.824584 | 7.458687e-54 | -8.615850e-47 |
| Msa0337480 | Msa1042880 | 0.825549 | 4.412430e-54 | -8.615850e-47 |
| Msa0337480 | Msa1059020 | 0.827360 | 1.633506e-54 | -8.615850e-47 |
| Msa0337480 | Msa1078880 | 0.801290 | 9.654804e-49 | -8.615850e-47 |
| Msa0337480 | Msa1078970 | 0.811553 | 6.608987e-51 | -8.615850e-47 |
| Msa0337480 | Msa1081390 | 0.827383 | 1.612802e-54 | -8.615850e-47 |
| Msa0337480 | Msa1082200 | 0.855345 | 6.715949e-62 | -8.615850e-47 |
| Msa0337480 | Msa1084530 | 0.834841 | 2.373135e-56 | -8.615850e-47 |
| Msa0337480 | Msa1090140 | 0.802443 | 5.595599e-49 | -8.615850e-47 |
| Msa0337480 | Msa1115710 | 0.806928 | 6.481505e-50 | -8.615850e-47 |
| Msa0337480 | Msa1116190 | 0.821052 | 4.956799e-53 | -8.615850e-47 |
| Msa0337480 | Msa1116220 | 0.832018 | 1.201076e-55 | -8.615850e-47 |
| Msa0337480 | Msa1116660 | 0.824701 | 7.000306e-54 | -8.615850e-47 |
| Msa0337480 | Msa1125820 | 0.832739 | 7.960223e-56 | -8.615850e-47 |
| Msa0337480 | Msa1125990 | 0.830962 | 2.184953e-55 | -8.615850e-47 |
| Msa0337480 | Msa1127470 | 0.806503 | 7.968947e-50 | -8.615850e-47 |
| Msa0337480 | Msa1130420 | 0.801166 | 1.023771e-48 | -8.615850e-47 |
| Msa0337480 | Msa1132530 | 0.800318 | 1.524373e-48 | -8.615850e-47 |
| Msa0337480 | Msa1132840 | 0.804630 | 1.970232e-49 | -8.615850e-47 |
| Msa0337480 | Msa1162590 | 0.818459 | 1.938880e-52 | -8.615850e-47 |
| Msa0337480 | Msa1171290 | 0.820194 | 7.799992e-53 | -8.615850e-47 |
| Msa0337480 | Msa1192570 | 0.817171 | 3.785996e-52 | -8.615850e-47 |
| Msa0337480 | Msa1208950 | 0.839899 | 1.202537e-57 | -8.615850e-47 |
| Msa0337480 | Msa1213830 | 0.812079 | 5.077109e-51 | -8.615850e-47 |
| Msa0337480 | Msa1214350 | 0.860713 | 1.704786e-63 | -8.615850e-47 |
| Msa0337480 | Msa1215870 | 0.805978 | 1.028040e-49 | -8.615850e-47 |
| Msa0337480 | Msa1244240 | 0.854334 | 1.319347e-61 | -8.615850e-47 |
| Msa0337480 | Msa1254540 | 0.830602 | 2.676959e-55 | -8.615850e-47 |
| Msa0337480 | Msa1260710 | 0.804980 | 1.664530e-49 | -8.615850e-47 |
| Msa0337480 | Msa1263740 | 0.820245 | 7.596318e-53 | -8.615850e-47 |
| Msa0337480 | Msa1263780 | 0.851659 | 7.684909e-61 | -8.615850e-47 |
| Msa0337480 | Msa1300460 | 0.813225 | 2.851317e-51 | -8.615850e-47 |
| Msa0337480 | Msa1301700 | 0.800616 | 1.325694e-48 | -8.615850e-47 |
| Msa0337480 | Msa1306790 | 0.832984 | 6.919631e-56 | -8.615850e-47 |
| Msa0337480 | Msa1332950 | 0.800929 | 1.144630e-48 | -8.615850e-47 |
| Msa0337480 | Msa1338210 | 0.837129 | 6.235161e-57 | -8.615850e-47 |
| Msa0337480 | Msa1339170 | 0.804546 | 2.050700e-49 | -8.615850e-47 |
| Msa0337480 | Msa1343170 | 0.826493 | 2.632260e-54 | -8.615850e-47 |
| Msa0337480 | Msa1343180 | 0.816564 | 5.181961e-52 | -8.615850e-47 |
| Msa0337480 | Msa1359980 | 0.805076 | 1.589814e-49 | -8.615850e-47 |
| Msa0337480 | Msa1362130 | 0.808153 | 3.562149e-50 | -8.615850e-47 |
| Msa0337480 | Msa1364410 | 0.803871 | 2.835045e-49 | -8.615850e-47 |
| Msa0337480 | Msa1384150 | 0.815510 | 8.908118e-52 | -8.615850e-47 |
| Msa0337480 | Msa1397400 | 0.802322 | 5.927867e-49 | -8.615850e-47 |
| Msa0337480 | Msa1417060 | 0.819989 | 8.692903e-53 | -8.615850e-47 |
| Msa0337480 | Msa1420950 | 0.805390 | 1.366035e-49 | -8.615850e-47 |
| Msa0337480 | Msa1437930 | 0.811814 | 5.799885e-51 | -8.615850e-47 |
| Msa0337480 | Msa1445120 | 0.801259 | 9.795899e-49 | -8.615850e-47 |
| Msa0337480 | Msa1446100 | 0.826093 | 3.277839e-54 | -8.615850e-47 |
| Msa0337480 | Msa1447170 | 0.838351 | 3.027448e-57 | -8.615850e-47 |
| Msa0337480 | Msa1450190 | 0.850785 | 1.356018e-60 | -8.615850e-47 |
| Msa0337480 | Msa1465360 | 0.809083 | 2.254516e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337480 | MtrunA17_Chr2g0324811 | 94.697 | 396 | 19 | 1 | 1 | 396 | 1 | 394 | 0.0 | 732 |
| Msa0337480 | MtrunA17_Chr4g0040431 | 52.289 | 415 | 154 | 11 | 1 | 386 | 1 | 400 | 2.18e-127 | 373 |
| Msa0337480 | MtrunA17_Chr2g0305891 | 35.043 | 234 | 151 | 1 | 139 | 371 | 326 | 559 | 1.24e-46 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337480 | AT2G20590.3 | 49.724 | 362 | 157 | 7 | 1 | 351 | 18 | 365 | 1.21e-103 | 313 |
| Msa0337480 | AT2G20590.1 | 49.180 | 366 | 166 | 7 | 1 | 351 | 18 | 378 | 6.18e-103 | 311 |
| Msa0337480 | AT4G28430.1 | 42.520 | 381 | 188 | 8 | 33 | 386 | 72 | 448 | 5.44e-93 | 287 |
| Msa0337480 | AT2G20590.2 | 49.677 | 310 | 136 | 7 | 1 | 295 | 18 | 322 | 8.07e-82 | 254 |
| Msa0337480 | AT5G58000.1 | 36.283 | 226 | 142 | 1 | 127 | 350 | 216 | 441 | 1.23e-46 | 166 |
| Msa0337480 | AT5G58000.2 | 37.383 | 214 | 132 | 1 | 139 | 350 | 334 | 547 | 3.53e-46 | 167 |
Find 92 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAGGTTTCAGTTTC+AGG | 0.086023 | 2_4:+57533325 | Msa0337480:CDS |
| ACAATTGGCGATTCTCATTT+TGG | 0.143148 | 2_4:+57533959 | Msa0337480:CDS |
| CTTCTACTAGGAGCTGAATT+TGG | 0.262185 | 2_4:+57534350 | Msa0337480:CDS |
| ATCAAAACTCGAATCTTTAC+AGG | 0.267508 | 2_4:+57534802 | Msa0337480:CDS |
| GTTGGGTTGGTTGAAGAAAT+TGG | 0.280135 | 2_4:+57533002 | Msa0337480:CDS |
| AACATTGTGGATTACTTTAA+GGG | 0.298725 | 2_4:-57534239 | None:intergenic |
| GTGTAGCAAGAATAAAGTTT+TGG | 0.298854 | 2_4:-57534550 | None:intergenic |
| CTTGAAGGTTGAGGAAAGTT+AGG | 0.307696 | 2_4:-57533071 | None:intergenic |
| TAGAATTTGAAGAAGAAAAT+GGG | 0.333581 | 2_4:+57533190 | Msa0337480:intron |
| ACAAAATCAACCCTTTGGTT+TGG | 0.349573 | 2_4:+57533270 | Msa0337480:CDS |
| GTAGAATTTGAAGAAGAAAA+TGG | 0.354309 | 2_4:+57533189 | Msa0337480:intron |
| GGGGTTGATTTAGATCATAT+TGG | 0.354774 | 2_4:+57533210 | Msa0337480:CDS |
| GAATTTGATGGGAATATAAA+AGG | 0.363370 | 2_4:-57535518 | None:intergenic |
| ACGATCGATGAGACGGGTCT+TGG | 0.364366 | 2_4:-57532838 | None:intergenic |
| ACTTCGTATCGCGGTTTCCT+TGG | 0.378063 | 2_4:-57532948 | None:intergenic |
| GAAAACAAAGATGGTGTTGT+TGG | 0.391114 | 2_4:+57532984 | Msa0337480:CDS |
| GGGTTGATTTAGATCATATT+GGG | 0.393926 | 2_4:+57533211 | Msa0337480:CDS |
| TCAACCCTTTGGTTTGGACT+TGG | 0.396972 | 2_4:+57533276 | Msa0337480:CDS |
| TGTCTCGGCCTTGTCACAAT+TGG | 0.407918 | 2_4:+57533944 | Msa0337480:CDS |
| TGGGCAGCTAGTGAGTGATT+TGG | 0.414286 | 2_4:+57533230 | Msa0337480:CDS |
| ATATAAAAGGCGGGTTCTCT+TGG | 0.429788 | 2_4:-57535505 | None:intergenic |
| GAGAATTAAAATGGTGCATC+GGG | 0.433683 | 2_4:+57536146 | Msa0337480:three_prime_UTR |
| ATTACTTTAAGGGTCATTGA+TGG | 0.440294 | 2_4:-57534229 | None:intergenic |
| TTGGCCACTTAATTACAATC+AGG | 0.443528 | 2_4:+57534369 | Msa0337480:CDS |
| AGATTGTTGGATTGATTTAA+CGG | 0.445938 | 2_4:-57532766 | None:intergenic |
| CACTCACAAGAAGAAATTAA+CGG | 0.445955 | 2_4:+57534744 | Msa0337480:CDS |
| ATGTAACAAAATCAACCCTT+TGG | 0.446627 | 2_4:+57533265 | Msa0337480:CDS |
| AGAGGGGAAGGGGAAGGTGA+AGG | 0.450275 | 2_4:-57532807 | None:intergenic |
| GGAAACTCAACTGGCATTAG+TGG | 0.450988 | 2_4:+57535415 | Msa0337480:CDS |
| GATTGATTTAACGGTGATGA+TGG | 0.455126 | 2_4:-57532757 | None:intergenic |
| GAAATGAATGAATGGTTTAG+AGG | 0.460465 | 2_4:-57532664 | None:intergenic |
| GGGTTTGAAACTATTGTTGT+TGG | 0.463082 | 2_4:+57534705 | Msa0337480:CDS |
| CGGCTAAACAATGTTAGAAA+AGG | 0.471096 | 2_4:+57536057 | Msa0337480:three_prime_UTR |
| TCAGCTCCTAGTAGAAGAAA+AGG | 0.471363 | 2_4:-57534344 | None:intergenic |
| CAAAGATGGTGTTGTTGGGT+TGG | 0.477270 | 2_4:+57532989 | Msa0337480:CDS |
| AACTATTGTTGTTGGATACA+TGG | 0.478642 | 2_4:+57534713 | Msa0337480:CDS |
| AGGACCAGGGTGCTATTCTC+AGG | 0.481892 | 2_4:+57534202 | Msa0337480:CDS |
| CGTACACAAGAGGAATTTGA+TGG | 0.482311 | 2_4:-57535530 | None:intergenic |
| AGAAGAACAGGAAACTCAAC+TGG | 0.484855 | 2_4:+57535406 | Msa0337480:CDS |
| GCCTCCTGATTGTAATTAAG+TGG | 0.488567 | 2_4:-57534373 | None:intergenic |
| GAAGGGGAAGGTGAAGGAGA+TGG | 0.490751 | 2_4:-57532801 | None:intergenic |
| GTGTACGGAGAAAATATTGT+TGG | 0.491333 | 2_4:+57535546 | Msa0337480:three_prime_UTR |
| GAGTTTGTGAAATGAATGAA+TGG | 0.497503 | 2_4:-57532672 | None:intergenic |
| ATTAACATACTTGAAGGTTG+AGG | 0.503849 | 2_4:-57533080 | None:intergenic |
| TTGATATTTCAGCATTGTCT+CGG | 0.506205 | 2_4:+57533929 | Msa0337480:intron |
| GAAACTGCAAAATTTAAAGC+AGG | 0.510333 | 2_4:-57534178 | None:intergenic |
| AGCCGTAACTAAAAGACGTC+AGG | 0.511207 | 2_4:-57536039 | None:intergenic |
| ATGGGAAGTGATTGATTTGG+TGG | 0.511832 | 2_4:-57532738 | None:intergenic |
| ATGATGGGAAGTGATTGATT+TGG | 0.511915 | 2_4:-57532741 | None:intergenic |
| AAAACAAAGATGGTGTTGTT+GGG | 0.515013 | 2_4:+57532985 | Msa0337480:CDS |
| GTGATGGTGATGGAGATTGT+TGG | 0.526109 | 2_4:-57532779 | None:intergenic |
| GAAGGAGATGGTGATGGTGA+TGG | 0.527359 | 2_4:-57532789 | None:intergenic |
| CATCAAATTCCTCTTGTGTA+CGG | 0.530434 | 2_4:+57535531 | Msa0337480:three_prime_UTR |
| TTTCAAGACGATCGATGAGA+CGG | 0.534233 | 2_4:-57532845 | None:intergenic |
| GGAGAATTAAAATGGTGCAT+CGG | 0.536824 | 2_4:+57536145 | Msa0337480:three_prime_UTR |
| GGAAGTGATTGATTTGGTGG+TGG | 0.540264 | 2_4:-57532735 | None:intergenic |
| TCTCAAATTCAATTTCTCAA+AGG | 0.543153 | 2_4:+57533994 | Msa0337480:CDS |
| ATTCAACAAGAAAACAAAGA+TGG | 0.548877 | 2_4:+57532975 | Msa0337480:CDS |
| ATCAGGAGGCTATGTGTCGC+TGG | 0.549350 | 2_4:+57534386 | Msa0337480:CDS |
| ATGTGAGAATTCATCTCGCA+TGG | 0.551185 | 2_4:+57536005 | Msa0337480:intron |
| TTTCTGAGAGGGGAAGGGGA+AGG | 0.555742 | 2_4:-57532813 | None:intergenic |
| ACATCCAAGTCCAAACCAAA+GGG | 0.560703 | 2_4:-57533280 | None:intergenic |
| TTGATGGGAATATAAAAGGC+GGG | 0.565252 | 2_4:-57535514 | None:intergenic |
| TACATCCAAGTCCAAACCAA+AGG | 0.566308 | 2_4:-57533281 | None:intergenic |
| ATTCCAGAATGTCAAAAGTA+CGG | 0.567233 | 2_4:-57534770 | None:intergenic |
| GAAGGTGAAGGAGATGGTGA+TGG | 0.569026 | 2_4:-57532795 | None:intergenic |
| ATAAGGAGAATTGATGTGGT+TGG | 0.570150 | 2_4:+57535459 | Msa0337480:exon |
| GCCACTTAATTACAATCAGG+AGG | 0.572666 | 2_4:+57534372 | Msa0337480:CDS |
| TTCAAGACGATCGATGAGAC+GGG | 0.573383 | 2_4:-57532844 | None:intergenic |
| TGAGTTGTGAAAACAGTGAA+GGG | 0.577200 | 2_4:-57532698 | None:intergenic |
| ATATAACACTCGACCCAAGA+AGG | 0.581043 | 2_4:+57533043 | Msa0337480:CDS |
| TAGTGAGTGATTTGGTTATG+TGG | 0.584348 | 2_4:+57533238 | Msa0337480:CDS |
| GTGGTTGGTAGTTCGATCAT+AGG | 0.584557 | 2_4:+57535474 | Msa0337480:three_prime_UTR |
| ATGAGTTGTGAAAACAGTGA+AGG | 0.595401 | 2_4:-57532699 | None:intergenic |
| CAAGATGGAAAAGCACAAGT+AGG | 0.610927 | 2_4:+57535341 | Msa0337480:CDS |
| AAAAGCACAAGTAGGTGAGA+AGG | 0.616726 | 2_4:+57535349 | Msa0337480:CDS |
| GTTGGTAGTTCGATCATAGG+TGG | 0.616826 | 2_4:+57535477 | Msa0337480:three_prime_UTR |
| AGAATTTGAAGAAGAAAATG+GGG | 0.616889 | 2_4:+57533191 | Msa0337480:intron |
| TTTGATGGGAATATAAAAGG+CGG | 0.617758 | 2_4:-57535515 | None:intergenic |
| ATTGATTTAACGGTGATGAT+GGG | 0.630435 | 2_4:-57532756 | None:intergenic |
| GATGAATCTCCTGAACCCGC+CGG | 0.635645 | 2_4:+57532876 | Msa0337480:CDS |
| TGAATTTCAACTTCGTATCG+CGG | 0.636174 | 2_4:-57532957 | None:intergenic |
| CAGATACTTAAAGCAGCATG+TGG | 0.658923 | 2_4:+57535307 | Msa0337480:CDS |
| GTACACAAGAGGAATTTGAT+GGG | 0.662137 | 2_4:-57535529 | None:intergenic |
| TTCTCCTGAGAATAGCACCC+TGG | 0.662515 | 2_4:-57534206 | None:intergenic |
| GAGAATCGCCAATTGTGACA+AGG | 0.663769 | 2_4:-57533952 | None:intergenic |
| GTGGTGCTGCAATTACAAGA+TGG | 0.665984 | 2_4:+57535326 | Msa0337480:CDS |
| AAAACAACACTCGAAAACCA+AGG | 0.680630 | 2_4:+57532931 | Msa0337480:CDS |
| CTATTTGTATTTCAGCAAAG+GGG | 0.684853 | 2_4:+57534090 | Msa0337480:intron |
| CCCGCCGGTGTAAAACGTCG+TGG | 0.690369 | 2_4:+57532891 | Msa0337480:CDS |
| ACTAGTCAGATAGACAAGCG+AGG | 0.729323 | 2_4:+57534571 | Msa0337480:CDS |
| GGGTTCAGGAGATTCATCAG+CGG | 0.747685 | 2_4:-57532871 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAGTCTATATAAAAAAA+TGG | + | chr2_4:57535067-57535086 | Msa0337480:intron | 15.0% |
| !! | AGTAATTAATATGCTAAAAA+AGG | - | chr2_4:57536120-57536139 | None:intergenic | 15.0% |
| !!! | TAGCATATTAATTACTTTTA+AGG | + | chr2_4:57536124-57536143 | Msa0337480:intron | 15.0% |
| !! | TAGAATTTGAAGAAGAAAAT+GGG | + | chr2_4:57533190-57533209 | Msa0337480:intron | 20.0% |
| !! | GTTTACTAAGCAAAATTAAA+GGG | - | chr2_4:57533372-57533391 | None:intergenic | 20.0% |
| !!! | ATTAATAATTTTCTTGTTGC+AGG | + | chr2_4:57534316-57534335 | Msa0337480:intron | 20.0% |
| !! | ATACTATAAACATAACATAC+AGG | + | chr2_4:57534505-57534524 | Msa0337480:intron | 20.0% |
| !!! | CTTAGTAATTATTGATTAAG+TGG | + | chr2_4:57534902-57534921 | Msa0337480:intron | 20.0% |
| !!! | TCTTATGATATCATTTTTGT+TGG | + | chr2_4:57535259-57535278 | Msa0337480:intron | 20.0% |
| !! | TAACTCAGATTCAAAAAATA+AGG | + | chr2_4:57535442-57535461 | Msa0337480:CDS | 20.0% |
| !!! | ACTTTTAAGGAGAATTAAAA+TGG | + | chr2_4:57536137-57536156 | Msa0337480:three_prime_UTR | 20.0% |
| !! | CCAATAAGTAACTAAAAAAA+GGG | - | chr2_4:57536175-57536194 | None:intergenic | 20.0% |
| !! | ACCAATAAGTAACTAAAAAA+AGG | - | chr2_4:57536176-57536195 | None:intergenic | 20.0% |
| !! | AGATTGTTGGATTGATTTAA+CGG | - | chr2_4:57532769-57532788 | None:intergenic | 25.0% |
| ! | ATTCAACAAGAAAACAAAGA+TGG | + | chr2_4:57532975-57532994 | Msa0337480:CDS | 25.0% |
| !! | GTGTTATATTTTCTCTTTCT+AGG | - | chr2_4:57533032-57533051 | None:intergenic | 25.0% |
| ! | GTAGAATTTGAAGAAGAAAA+TGG | + | chr2_4:57533189-57533208 | Msa0337480:intron | 25.0% |
| ! | AGAATTTGAAGAAGAAAATG+GGG | + | chr2_4:57533191-57533210 | Msa0337480:intron | 25.0% |
| ! | GGTTTACTAAGCAAAATTAA+AGG | - | chr2_4:57533373-57533392 | None:intergenic | 25.0% |
| ! | TTGCTTAGTAAACCTTTAAT+TGG | + | chr2_4:57533379-57533398 | Msa0337480:intron | 25.0% |
| ! | TAGTTAAGCAATCCAATTAA+AGG | - | chr2_4:57533394-57533413 | None:intergenic | 25.0% |
| ! | AATCTCAGAATGATAGTTTA+GGG | + | chr2_4:57533549-57533568 | Msa0337480:intron | 25.0% |
| !! | GGACAGTGTTATTATATATA+TGG | + | chr2_4:57533659-57533678 | Msa0337480:intron | 25.0% |
| ! | CTTGAATGAACTATTGTTTA+CGG | - | chr2_4:57533694-57533713 | None:intergenic | 25.0% |
| ! | ATTTGTGATCTTTATTCTCA+TGG | + | chr2_4:57533883-57533902 | Msa0337480:intron | 25.0% |
| ! | TCTCAAATTCAATTTCTCAA+AGG | + | chr2_4:57533994-57534013 | Msa0337480:CDS | 25.0% |
| ! | TTCTATTTGTATTTCAGCAA+AGG | + | chr2_4:57534088-57534107 | Msa0337480:intron | 25.0% |
| ! | TCTATTTGTATTTCAGCAAA+GGG | + | chr2_4:57534089-57534108 | Msa0337480:intron | 25.0% |
| !! | CTTTAAATTTTGCAGTTTCA+AGG | + | chr2_4:57534182-57534201 | Msa0337480:CDS | 25.0% |
| !! | AACATTGTGGATTACTTTAA+GGG | - | chr2_4:57534242-57534261 | None:intergenic | 25.0% |
| ! | AATTCAGAATAAGAACATTG+TGG | - | chr2_4:57534255-57534274 | None:intergenic | 25.0% |
| ! | TATATAGATGATAGAGTTCA+TGG | - | chr2_4:57534420-57534439 | None:intergenic | 25.0% |
| !! | AAATTGGGTTTTCAAAGAAA+AGG | - | chr2_4:57534444-57534463 | None:intergenic | 25.0% |
| ! | AGCGAACTATAATAGAAATT+GGG | - | chr2_4:57534459-57534478 | None:intergenic | 25.0% |
| ! | AAGCGAACTATAATAGAAAT+TGG | - | chr2_4:57534460-57534479 | None:intergenic | 25.0% |
| !! | TGTAGCAAGAATAAAGTTTT+GGG | - | chr2_4:57534552-57534571 | None:intergenic | 25.0% |
| ! | AATTGAACATAAATTTGTGC+AGG | - | chr2_4:57534969-57534988 | None:intergenic | 25.0% |
| !!! | TTGGATTTTAAGATTCATAG+TGG | - | chr2_4:57535173-57535192 | None:intergenic | 25.0% |
| ! | ACTATGAATCTTAAAATCCA+AGG | + | chr2_4:57535172-57535191 | Msa0337480:intron | 25.0% |
| ! | TCCAAGGAGTTATTTATTTA+TGG | + | chr2_4:57535188-57535207 | Msa0337480:intron | 25.0% |
| ! | TCCATAAATAAATAACTCCT+TGG | - | chr2_4:57535192-57535211 | None:intergenic | 25.0% |
| ! | ATAAGAATCAACTTTGACAA+AGG | - | chr2_4:57535245-57535264 | None:intergenic | 25.0% |
| ! | AAAAATAAGGAGAATTGATG+TGG | + | chr2_4:57535455-57535474 | Msa0337480:exon | 25.0% |
| ! | GAATTTGATGGGAATATAAA+AGG | - | chr2_4:57535521-57535540 | None:intergenic | 25.0% |
| !! | TACATGTACTATTTTATCGT+TGG | + | chr2_4:57535722-57535741 | Msa0337480:intron | 25.0% |
| !!! | AGTCATAGGAATAACTTTTT+TGG | - | chr2_4:57535968-57535987 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTTAGTTACTTAT+TGG | + | chr2_4:57536172-57536191 | Msa0337480:three_prime_UTR | 25.0% |
| GAGTTTGTGAAATGAATGAA+TGG | - | chr2_4:57532675-57532694 | None:intergenic | 30.0% | |
| ! | ATTGATTTAACGGTGATGAT+GGG | - | chr2_4:57532759-57532778 | None:intergenic | 30.0% |
| !! | AAAACAAAGATGGTGTTGTT+GGG | + | chr2_4:57532985-57533004 | Msa0337480:CDS | 30.0% |
| ! | AAGTTAGGTTTTTCCTTCTT+GGG | - | chr2_4:57533059-57533078 | None:intergenic | 30.0% |
| ! | AAAGTTAGGTTTTTCCTTCT+TGG | - | chr2_4:57533060-57533079 | None:intergenic | 30.0% |
| ATTAACATACTTGAAGGTTG+AGG | - | chr2_4:57533083-57533102 | None:intergenic | 30.0% | |
| CATTGCATTAACATACTTGA+AGG | - | chr2_4:57533089-57533108 | None:intergenic | 30.0% | |
| ! | GGGTTGATTTAGATCATATT+GGG | + | chr2_4:57533211-57533230 | Msa0337480:CDS | 30.0% |
| ATGTAACAAAATCAACCCTT+TGG | + | chr2_4:57533265-57533284 | Msa0337480:CDS | 30.0% | |
| ! | TTATCTTCATGCTTTTCTCA+AGG | + | chr2_4:57533312-57533331 | Msa0337480:CDS | 30.0% |
| ! | GCTATTAGTTTCAATTGTTC+AGG | + | chr2_4:57533512-57533531 | Msa0337480:intron | 30.0% |
| GAATCTCAGAATGATAGTTT+AGG | + | chr2_4:57533548-57533567 | Msa0337480:intron | 30.0% | |
| TCAGGGTTATCATTGTAATA+TGG | + | chr2_4:57533638-57533657 | Msa0337480:intron | 30.0% | |
| TTGATATTTCAGCATTGTCT+CGG | + | chr2_4:57533929-57533948 | Msa0337480:intron | 30.0% | |
| CTATTTGTATTTCAGCAAAG+GGG | + | chr2_4:57534090-57534109 | Msa0337480:intron | 30.0% | |
| ! | GAAACTGCAAAATTTAAAGC+AGG | - | chr2_4:57534181-57534200 | None:intergenic | 30.0% |
| ! | ATTACTTTAAGGGTCATTGA+TGG | - | chr2_4:57534232-57534251 | None:intergenic | 30.0% |
| ! | GAACATTGTGGATTACTTTA+AGG | - | chr2_4:57534243-57534262 | None:intergenic | 30.0% |
| ! | GTAATTCCTTTTCTTCTACT+AGG | + | chr2_4:57534338-57534357 | Msa0337480:CDS | 30.0% |
| ! | GTGTAGCAAGAATAAAGTTT+TGG | - | chr2_4:57534553-57534572 | None:intergenic | 30.0% |
| !!! | TAACTTGTTGAAGCTTTTGT+AGG | + | chr2_4:57534617-57534636 | Msa0337480:intron | 30.0% |
| ! | AACTATTGTTGTTGGATACA+TGG | + | chr2_4:57534713-57534732 | Msa0337480:CDS | 30.0% |
| CACTCACAAGAAGAAATTAA+CGG | + | chr2_4:57534744-57534763 | Msa0337480:CDS | 30.0% | |
| ATTCCAGAATGTCAAAAGTA+CGG | - | chr2_4:57534773-57534792 | None:intergenic | 30.0% | |
| ATCAAAACTCGAATCTTTAC+AGG | + | chr2_4:57534802-57534821 | Msa0337480:CDS | 30.0% | |
| ! | TTACTAAGACATTTTGCAGA+AGG | - | chr2_4:57534890-57534909 | None:intergenic | 30.0% |
| ATTAAGTGGAAAGATAACTG+TGG | + | chr2_4:57534916-57534935 | Msa0337480:intron | 30.0% | |
| TTTGATGGGAATATAAAAGG+CGG | - | chr2_4:57535518-57535537 | None:intergenic | 30.0% | |
| AATATTGTTGGTATGTGAGA+AGG | + | chr2_4:57535558-57535577 | Msa0337480:intron | 30.0% | |
| ATATTGTTGGTATGTGAGAA+GGG | + | chr2_4:57535559-57535578 | Msa0337480:intron | 30.0% | |
| TAGTAATGTTTGCAACATCT+TGG | + | chr2_4:57535696-57535715 | Msa0337480:intron | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr2_4:57535787-57535806 | Msa0337480:intron | 30.0% | |
| TGTTATGCTTATAACAAGGT+AGG | + | chr2_4:57535811-57535830 | Msa0337480:intron | 30.0% | |
| TGATGTCATTGTACAAATAG+TGG | + | chr2_4:57535900-57535919 | Msa0337480:intron | 30.0% | |
| GATGTCATTGTACAAATAGT+GGG | + | chr2_4:57535901-57535920 | Msa0337480:intron | 30.0% | |
| ATGTCATTGTACAAATAGTG+GGG | + | chr2_4:57535902-57535921 | Msa0337480:intron | 30.0% | |
| AAATTCTATGGTGAAGTCAT+AGG | - | chr2_4:57535982-57536001 | None:intergenic | 30.0% | |
| TTCTCACATGGAAAATTCTA+TGG | - | chr2_4:57535994-57536013 | None:intergenic | 30.0% | |
| TGAGTTGTGAAAACAGTGAA+GGG | - | chr2_4:57532701-57532720 | None:intergenic | 35.0% | |
| ATGAGTTGTGAAAACAGTGA+AGG | - | chr2_4:57532702-57532721 | None:intergenic | 35.0% | |
| ! | TTCACTGTTTTCACAACTCA+TGG | + | chr2_4:57532701-57532720 | Msa0337480:exon | 35.0% |
| ! | ATGATGGGAAGTGATTGATT+TGG | - | chr2_4:57532744-57532763 | None:intergenic | 35.0% |
| ! | GATTGATTTAACGGTGATGA+TGG | - | chr2_4:57532760-57532779 | None:intergenic | 35.0% |
| AAAACAACACTCGAAAACCA+AGG | + | chr2_4:57532931-57532950 | Msa0337480:CDS | 35.0% | |
| TGAATTTCAACTTCGTATCG+CGG | - | chr2_4:57532960-57532979 | None:intergenic | 35.0% | |
| !! | GAAAACAAAGATGGTGTTGT+TGG | + | chr2_4:57532984-57533003 | Msa0337480:CDS | 35.0% |
| ! | GGGGTTGATTTAGATCATAT+TGG | + | chr2_4:57533210-57533229 | Msa0337480:CDS | 35.0% |
| !! | TAGTGAGTGATTTGGTTATG+TGG | + | chr2_4:57533238-57533257 | Msa0337480:CDS | 35.0% |
| ACAAAATCAACCCTTTGGTT+TGG | + | chr2_4:57533270-57533289 | Msa0337480:CDS | 35.0% | |
| TTTCTCAAGGTTTCAGTTTC+AGG | + | chr2_4:57533325-57533344 | Msa0337480:CDS | 35.0% | |
| TCTATTTAGCCCCTCAAAAT+CGG | + | chr2_4:57533425-57533444 | Msa0337480:intron | 35.0% | |
| ATCGGAGAGAGTGATAATTT+AGG | + | chr2_4:57533443-57533462 | Msa0337480:intron | 35.0% | |
| TCAATTGTTCAGGATCAGAT+TGG | + | chr2_4:57533522-57533541 | Msa0337480:intron | 35.0% | |
| GATTGTTTGTTTACGCAGTT+TGG | - | chr2_4:57533769-57533788 | None:intergenic | 35.0% | |
| ! | GTTGCTGTTCTAACAAAAGT+TGG | + | chr2_4:57533836-57533855 | Msa0337480:intron | 35.0% |
| TTCTCATGGAGAAAAAACTG+AGG | + | chr2_4:57533897-57533916 | Msa0337480:intron | 35.0% | |
| ! | ACAATTGGCGATTCTCATTT+TGG | + | chr2_4:57533959-57533978 | Msa0337480:CDS | 35.0% |
| ! | CAATTGGCGATTCTCATTTT+GGG | + | chr2_4:57533960-57533979 | Msa0337480:CDS | 35.0% |
| TTGGCCACTTAATTACAATC+AGG | + | chr2_4:57534369-57534388 | Msa0337480:CDS | 35.0% | |
| TTATATGCATATGCAGCTGA+GGG | + | chr2_4:57534685-57534704 | Msa0337480:intron | 35.0% | |
| ! | GGGTTTGAAACTATTGTTGT+TGG | + | chr2_4:57534705-57534724 | Msa0337480:CDS | 35.0% |
| TAAACTCCAATACATTGCAG+TGG | - | chr2_4:57535097-57535116 | None:intergenic | 35.0% | |
| ACAACAGAAAAAAGAACCAG+TGG | + | chr2_4:57535373-57535392 | Msa0337480:CDS | 35.0% | |
| ATAAGGAGAATTGATGTGGT+TGG | + | chr2_4:57535459-57535478 | Msa0337480:exon | 35.0% | |
| TTGATGGGAATATAAAAGGC+GGG | - | chr2_4:57535517-57535536 | None:intergenic | 35.0% | |
| GTACACAAGAGGAATTTGAT+GGG | - | chr2_4:57535532-57535551 | None:intergenic | 35.0% | |
| CATCAAATTCCTCTTGTGTA+CGG | + | chr2_4:57535531-57535550 | Msa0337480:three_prime_UTR | 35.0% | |
| ! | ATATTTTCTCCGTACACAAG+AGG | - | chr2_4:57535543-57535562 | None:intergenic | 35.0% |
| GTGTACGGAGAAAATATTGT+TGG | + | chr2_4:57535546-57535565 | Msa0337480:three_prime_UTR | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr2_4:57535786-57535805 | Msa0337480:intron | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr2_4:57535788-57535807 | Msa0337480:intron | 35.0% | |
| !! | TTCCTGACGTCTTTTAGTTA+CGG | + | chr2_4:57536037-57536056 | Msa0337480:three_prime_UTR | 35.0% |
| CGGCTAAACAATGTTAGAAA+AGG | + | chr2_4:57536057-57536076 | Msa0337480:three_prime_UTR | 35.0% | |
| GGAGAATTAAAATGGTGCAT+CGG | + | chr2_4:57536145-57536164 | Msa0337480:three_prime_UTR | 35.0% | |
| GAGAATTAAAATGGTGCATC+GGG | + | chr2_4:57536146-57536165 | Msa0337480:three_prime_UTR | 35.0% | |
| !! | ATGGGAAGTGATTGATTTGG+TGG | - | chr2_4:57532741-57532760 | None:intergenic | 40.0% |
| TTTCAAGACGATCGATGAGA+CGG | - | chr2_4:57532848-57532867 | None:intergenic | 40.0% | |
| !!! | AGTGTTGTTTTGAGTGAGTC+TGG | - | chr2_4:57532922-57532941 | None:intergenic | 40.0% |
| !! | GTTGGGTTGGTTGAAGAAAT+TGG | + | chr2_4:57533002-57533021 | Msa0337480:CDS | 40.0% |
| ATATAACACTCGACCCAAGA+AGG | + | chr2_4:57533043-57533062 | Msa0337480:CDS | 40.0% | |
| CTTGAAGGTTGAGGAAAGTT+AGG | - | chr2_4:57533074-57533093 | None:intergenic | 40.0% | |
| ACATCCAAGTCCAAACCAAA+GGG | - | chr2_4:57533283-57533302 | None:intergenic | 40.0% | |
| TACATCCAAGTCCAAACCAA+AGG | - | chr2_4:57533284-57533303 | None:intergenic | 40.0% | |
| ! | ATCACTCTCTCCGATTTTGA+GGG | - | chr2_4:57533438-57533457 | None:intergenic | 40.0% |
| ! | TATCACTCTCTCCGATTTTG+AGG | - | chr2_4:57533439-57533458 | None:intergenic | 40.0% |
| TGACCCATAAGCACAAAAGA+TGG | + | chr2_4:57533595-57533614 | Msa0337480:intron | 40.0% | |
| GACCCATAAGCACAAAAGAT+GGG | + | chr2_4:57533596-57533615 | Msa0337480:intron | 40.0% | |
| ! | TGCCCATCTTTTGTGCTTAT+GGG | - | chr2_4:57533601-57533620 | None:intergenic | 40.0% |
| ! | TTGCCCATCTTTTGTGCTTA+TGG | - | chr2_4:57533602-57533621 | None:intergenic | 40.0% |
| TAAGCACAAAAGATGGGCAA+AGG | + | chr2_4:57533602-57533621 | Msa0337480:intron | 40.0% | |
| AAGCACAAAAGATGGGCAAA+GGG | + | chr2_4:57533603-57533622 | Msa0337480:intron | 40.0% | |
| ! | ATTTTGCAGTTTCAAGGACC+AGG | + | chr2_4:57534188-57534207 | Msa0337480:CDS | 40.0% |
| ! | TTTTGCAGTTTCAAGGACCA+GGG | + | chr2_4:57534189-57534208 | Msa0337480:CDS | 40.0% |
| TCAGCTCCTAGTAGAAGAAA+AGG | - | chr2_4:57534347-57534366 | None:intergenic | 40.0% | |
| CTTCTACTAGGAGCTGAATT+TGG | + | chr2_4:57534350-57534369 | Msa0337480:CDS | 40.0% | |
| GCCACTTAATTACAATCAGG+AGG | + | chr2_4:57534372-57534391 | Msa0337480:CDS | 40.0% | |
| GCCTCCTGATTGTAATTAAG+TGG | - | chr2_4:57534376-57534395 | None:intergenic | 40.0% | |
| GTTATATGCATATGCAGCTG+AGG | + | chr2_4:57534684-57534703 | Msa0337480:intron | 40.0% | |
| ! | TGTCCGTACTTTTGACATTC+TGG | + | chr2_4:57534767-57534786 | Msa0337480:CDS | 40.0% |
| !! | TGTGCAGGAGTGATTTGTTA+AGG | - | chr2_4:57534954-57534973 | None:intergenic | 40.0% |
| ! | TCAATTTTTCTGTGTGCGCT+AGG | + | chr2_4:57534983-57535002 | Msa0337480:intron | 40.0% |
| GAGTTTATTCAGCAATACGC+TGG | + | chr2_4:57535110-57535129 | Msa0337480:intron | 40.0% | |
| CAGATACTTAAAGCAGCATG+TGG | + | chr2_4:57535307-57535326 | Msa0337480:CDS | 40.0% | |
| ! | CAAGATGGAAAAGCACAAGT+AGG | + | chr2_4:57535341-57535360 | Msa0337480:CDS | 40.0% |
| ! | AAAAGCACAAGTAGGTGAGA+AGG | + | chr2_4:57535349-57535368 | Msa0337480:CDS | 40.0% |
| ACAGAAAAAAGAACCAGTGG+TGG | + | chr2_4:57535376-57535395 | Msa0337480:CDS | 40.0% | |
| !!! | TCTTCTGTTTTTACCACCAC+TGG | - | chr2_4:57535392-57535411 | None:intergenic | 40.0% |
| GGTGGTAAAAACAGAAGAAC+AGG | + | chr2_4:57535394-57535413 | Msa0337480:CDS | 40.0% | |
| AGAAGAACAGGAAACTCAAC+TGG | + | chr2_4:57535406-57535425 | Msa0337480:CDS | 40.0% | |
| ! | ATATAAAAGGCGGGTTCTCT+TGG | - | chr2_4:57535508-57535527 | None:intergenic | 40.0% |
| CGTACACAAGAGGAATTTGA+TGG | - | chr2_4:57535533-57535552 | None:intergenic | 40.0% | |
| ! | GGGGTGTTATGCTTATAACA+AGG | + | chr2_4:57535807-57535826 | Msa0337480:intron | 40.0% |
| ATGCGAGATGAATTCTCACA+TGG | - | chr2_4:57536006-57536025 | None:intergenic | 40.0% | |
| ATGTGAGAATTCATCTCGCA+TGG | + | chr2_4:57536005-57536024 | Msa0337480:intron | 40.0% | |
| !! | GGAAGTGATTGATTTGGTGG+TGG | - | chr2_4:57532738-57532757 | None:intergenic | 45.0% |
| !! | GTGATGGTGATGGAGATTGT+TGG | - | chr2_4:57532782-57532801 | None:intergenic | 45.0% |
| !! | TGGATTTTCTGAGAGGGGAA+GGG | - | chr2_4:57532821-57532840 | None:intergenic | 45.0% |
| !! | TTGGATTTTCTGAGAGGGGA+AGG | - | chr2_4:57532822-57532841 | None:intergenic | 45.0% |
| !! | GGTCTTGGATTTTCTGAGAG+GGG | - | chr2_4:57532826-57532845 | None:intergenic | 45.0% |
| !! | GGGTCTTGGATTTTCTGAGA+GGG | - | chr2_4:57532827-57532846 | None:intergenic | 45.0% |
| TTCAAGACGATCGATGAGAC+GGG | - | chr2_4:57532847-57532866 | None:intergenic | 45.0% | |
| ! | TTTGCCACGACGTTTTACAC+CGG | - | chr2_4:57532898-57532917 | None:intergenic | 45.0% |
| !! | CAAAGATGGTGTTGTTGGGT+TGG | + | chr2_4:57532989-57533008 | Msa0337480:CDS | 45.0% |
| !! | TCAACCCTTTGGTTTGGACT+TGG | + | chr2_4:57533276-57533295 | Msa0337480:CDS | 45.0% |
| ! | TCACTCTCTCCGATTTTGAG+GGG | - | chr2_4:57533437-57533456 | None:intergenic | 45.0% |
| AAAAGATGGGCAAAGGGCTT+TGG | + | chr2_4:57533609-57533628 | Msa0337480:intron | 45.0% | |
| ! | AAAGGGCTTTGGTACAGTTC+AGG | + | chr2_4:57533620-57533639 | Msa0337480:intron | 45.0% |
| ! | AAGGGCTTTGGTACAGTTCA+GGG | + | chr2_4:57533621-57533640 | Msa0337480:intron | 45.0% |
| GAGAATCGCCAATTGTGACA+AGG | - | chr2_4:57533955-57533974 | None:intergenic | 45.0% | |
| ACTAGTCAGATAGACAAGCG+AGG | + | chr2_4:57534571-57534590 | Msa0337480:CDS | 45.0% | |
| CTCCAATACATTGCAGTGGA+AGG | - | chr2_4:57535093-57535112 | None:intergenic | 45.0% | |
| ! | GTTGGCAGCTTTTATGTTGC+TGG | + | chr2_4:57535277-57535296 | Msa0337480:intron | 45.0% |
| !! | GTGGTGCTGCAATTACAAGA+TGG | + | chr2_4:57535326-57535345 | Msa0337480:CDS | 45.0% |
| GGAAACTCAACTGGCATTAG+TGG | + | chr2_4:57535415-57535434 | Msa0337480:CDS | 45.0% | |
| !! | GTGGTTGGTAGTTCGATCAT+AGG | + | chr2_4:57535474-57535493 | Msa0337480:three_prime_UTR | 45.0% |
| !! | GTTGGTAGTTCGATCATAGG+TGG | + | chr2_4:57535477-57535496 | Msa0337480:three_prime_UTR | 45.0% |
| ATGTGAGAAGGGAGCTTCTA+CGG | + | chr2_4:57535570-57535589 | Msa0337480:intron | 45.0% | |
| AGCCGTAACTAAAAGACGTC+AGG | - | chr2_4:57536042-57536061 | None:intergenic | 45.0% | |
| !! | CAAAAAAAAAAAAAAAATTA+GGG | - | chr2_4:57533158-57533177 | None:intergenic | 5.0% |
| !! | ACAAAAAAAAAAAAAAAATT+AGG | - | chr2_4:57533159-57533178 | None:intergenic | 5.0% |
| !! | GAAGGAGATGGTGATGGTGA+TGG | - | chr2_4:57532792-57532811 | None:intergenic | 50.0% |
| GAAGGTGAAGGAGATGGTGA+TGG | - | chr2_4:57532798-57532817 | None:intergenic | 50.0% | |
| !! | GGATTTTCTGAGAGGGGAAG+GGG | - | chr2_4:57532820-57532839 | None:intergenic | 50.0% |
| ! | CGGGTCTTGGATTTTCTGAG+AGG | - | chr2_4:57532828-57532847 | None:intergenic | 50.0% |
| GGGTTCAGGAGATTCATCAG+CGG | - | chr2_4:57532874-57532893 | None:intergenic | 50.0% | |
| ACTTCGTATCGCGGTTTCCT+TGG | - | chr2_4:57532951-57532970 | None:intergenic | 50.0% | |
| TGGGCAGCTAGTGAGTGATT+TGG | + | chr2_4:57533230-57533249 | Msa0337480:CDS | 50.0% | |
| TGCTCTGCAATCGTAGACGT+AGG | + | chr2_4:57533734-57533753 | Msa0337480:intron | 50.0% | |
| ATCGTAGACGTAGGCACACT+TGG | + | chr2_4:57533743-57533762 | Msa0337480:intron | 50.0% | |
| ! | TGTCTCGGCCTTGTCACAAT+TGG | + | chr2_4:57533944-57533963 | Msa0337480:CDS | 50.0% |
| TTCTCCTGAGAATAGCACCC+TGG | - | chr2_4:57534209-57534228 | None:intergenic | 50.0% | |
| GGCCTTCCACTGCAATGTAT+TGG | + | chr2_4:57535088-57535107 | Msa0337480:intron | 50.0% | |
| GAAGGGGAAGGTGAAGGAGA+TGG | - | chr2_4:57532804-57532823 | None:intergenic | 55.0% | |
| ! | TTTCTGAGAGGGGAAGGGGA+AGG | - | chr2_4:57532816-57532835 | None:intergenic | 55.0% |
| ACGATCGATGAGACGGGTCT+TGG | - | chr2_4:57532841-57532860 | None:intergenic | 55.0% | |
| GATGAATCTCCTGAACCCGC+CGG | + | chr2_4:57532876-57532895 | Msa0337480:CDS | 55.0% | |
| !! | AGGACCAGGGTGCTATTCTC+AGG | + | chr2_4:57534202-57534221 | Msa0337480:CDS | 55.0% |
| ATCAGGAGGCTATGTGTCGC+TGG | + | chr2_4:57534386-57534405 | Msa0337480:CDS | 55.0% | |
| ! | GAGGCTATGTGTCGCTGGTT+AGG | + | chr2_4:57534391-57534410 | Msa0337480:intron | 55.0% |
| AGAGGGGAAGGGGAAGGTGA+AGG | - | chr2_4:57532810-57532829 | None:intergenic | 60.0% | |
| !! | CGTTTTACACCGGCGGGTTC+AGG | - | chr2_4:57532888-57532907 | None:intergenic | 60.0% |
| ! | CCACGACGTTTTACACCGGC+GGG | - | chr2_4:57532894-57532913 | None:intergenic | 60.0% |
| ! | GCCACGACGTTTTACACCGG+CGG | - | chr2_4:57532895-57532914 | None:intergenic | 60.0% |
| CCCGCCGGTGTAAAACGTCG+TGG | + | chr2_4:57532891-57532910 | Msa0337480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 57532667 | 57536210 | 57532667 | ID=Msa0337480;Name=Msa0337480 |
| chr2_4 | mRNA | 57532667 | 57536210 | 57532667 | ID=Msa0337480-mRNA-1;Parent=Msa0337480;Name=Msa0337480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=53|1|1|1|0.77|0.7|10|267|396 |
| chr2_4 | exon | 57532667 | 57533092 | 57532667 | ID=Msa0337480-mRNA-1:exon:17517;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57533193 | 57533346 | 57533193 | ID=Msa0337480-mRNA-1:exon:17518;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57533941 | 57534015 | 57533941 | ID=Msa0337480-mRNA-1:exon:17519;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57534105 | 57534246 | 57534105 | ID=Msa0337480-mRNA-1:exon:17520;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57534338 | 57534407 | 57534338 | ID=Msa0337480-mRNA-1:exon:17521;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57534527 | 57534592 | 57534527 | ID=Msa0337480-mRNA-1:exon:17522;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57534701 | 57534823 | 57534701 | ID=Msa0337480-mRNA-1:exon:17523;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57535285 | 57535567 | 57535285 | ID=Msa0337480-mRNA-1:exon:17524;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57536011 | 57536096 | 57536011 | ID=Msa0337480-mRNA-1:exon:17525;Parent=Msa0337480-mRNA-1 |
| chr2_4 | exon | 57536125 | 57536210 | 57536125 | ID=Msa0337480-mRNA-1:exon:17526;Parent=Msa0337480-mRNA-1 |
| chr2_4 | five_prime_UTR | 57532667 | 57532719 | 57532667 | ID=Msa0337480-mRNA-1:five_prime_utr;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57532720 | 57533092 | 57532720 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57533193 | 57533346 | 57533193 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57533941 | 57534015 | 57533941 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57534105 | 57534246 | 57534105 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57534338 | 57534407 | 57534338 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57534527 | 57534592 | 57534527 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57534701 | 57534823 | 57534701 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | CDS | 57535285 | 57535472 | 57535285 | ID=Msa0337480-mRNA-1:cds;Parent=Msa0337480-mRNA-1 |
| chr2_4 | three_prime_UTR | 57535473 | 57535567 | 57535473 | ID=Msa0337480-mRNA-1:three_prime_utr;Parent=Msa0337480-mRNA-1 |
| chr2_4 | three_prime_UTR | 57536011 | 57536096 | 57536011 | ID=Msa0337480-mRNA-1:three_prime_utr;Parent=Msa0337480-mRNA-1 |
| chr2_4 | three_prime_UTR | 57536125 | 57536210 | 57536125 | ID=Msa0337480-mRNA-1:three_prime_utr;Parent=Msa0337480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
