AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0048510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048510 MtrunA17_Chr5g0405401 91.753 291 22 2 1 291 1 289 9.66e-179 494
Msa0048510 MtrunA17_Chr8g0371981 50.571 350 98 14 1 286 1 339 1.40e-72 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048510 AT5G66230.1 39.481 347 129 14 1 284 1 329 2.37e-45 156
Msa0048510 AT5G66230.2 39.130 345 129 14 3 284 219 545 5.36e-42 152
Msa0048510 AT3G51230.1 44.954 109 39 3 1 91 1 106 5.42e-18 80.5

Find 67 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTTAAAACTTTAAT+TGG 0.102517 1_2:-838398 None:intergenic
CCTCAAATTCAGAGTCTTTC+TGG 0.117151 1_2:+837143 Msa0048510:CDS
AAACGAAGATGTTTCCCTTT+TGG 0.292026 1_2:-838179 None:intergenic
CAATCTTCAATCACTTTCAA+TGG 0.312934 1_2:+836683 Msa0048510:exon
TCACCAATTGTGGGTCTTGC+TGG 0.314090 1_2:+836993 Msa0048510:CDS
GTGAGAGTTGTTGTGGATGA+TGG 0.320301 1_2:-836711 None:intergenic
ATGATGGCAGGTGGTGAAAA+TGG 0.338531 1_2:+837707 Msa0048510:intron
TCAAGATCGATGTGCATTGA+TGG 0.354068 1_2:+836956 Msa0048510:CDS
CTCTGAGAAGTCAAGGGACT+TGG 0.360313 1_2:-837766 None:intergenic
CCAGAAAGACTCTGAATTTG+AGG 0.370802 1_2:-837143 None:intergenic
TAGATGAAGATGCTTCTATC+TGG 0.397277 1_2:+837856 Msa0048510:CDS
CTTCTTCAACCATCTGCATA+AGG 0.410420 1_2:-837112 None:intergenic
ACCTAATGTGTTGCATTTGA+AGG 0.412380 1_2:+838145 Msa0048510:CDS
AAGTTCTGCTAAGTGATTCA+TGG 0.413899 1_2:+838252 Msa0048510:three_prime_UTR
AAGGTGGTTCCAAAATTTGC+TGG 0.416494 1_2:+838044 Msa0048510:CDS
TCAACAACAATCAATTTCTC+AGG 0.428450 1_2:+837193 Msa0048510:CDS
TGAGAGTTGTTGTGGATGAT+GGG 0.430806 1_2:-836710 None:intergenic
AAGGGATTACCAACACCAAA+AGG 0.433129 1_2:+838164 Msa0048510:CDS
CCCTTCAAATGCAACACATT+AGG 0.434003 1_2:-838146 None:intergenic
GACAAATGATTCACCAATTG+TGG 0.435186 1_2:+836983 Msa0048510:CDS
TTCTTCAACCATCTGCATAA+GGG 0.467939 1_2:-837111 None:intergenic
AGCAAAGCTTCACCAGATCC+TGG 0.479015 1_2:-837071 None:intergenic
ATAATGAAAAGAAGTGAAGA+AGG 0.485936 1_2:-836596 None:intergenic
CCACCAGCAAGACCCACAAT+TGG 0.497063 1_2:-836996 None:intergenic
GTGAAGAACACACCAGGATC+TGG 0.501240 1_2:+837059 Msa0048510:CDS
CCTAATGTGTTGCATTTGAA+GGG 0.505604 1_2:+838146 Msa0048510:CDS
GAGATTTCTCTGAGAAGTCA+AGG 0.515939 1_2:-837773 None:intergenic
TATGCAGATGGTTGAAGAAG+AGG 0.527703 1_2:+837115 Msa0048510:CDS
TTGGAATATTTGAAGACCAC+AGG 0.529441 1_2:-838352 None:intergenic
AGATTCTGTGTCAAAATCAA+AGG 0.534978 1_2:+836923 Msa0048510:CDS
TTTGAAGACCACAGGAATTG+TGG 0.545785 1_2:-838344 None:intergenic
GATTCTGTGTCAAAATCAAA+GGG 0.549781 1_2:+836924 Msa0048510:CDS
CTACCTCTTTGTTTCGCAGA+CGG 0.551296 1_2:-837032 None:intergenic
GTGACAGAAGGAAGTGTGGT+TGG 0.552956 1_2:+837822 Msa0048510:CDS
ATCTGGTGAAGCTTTGCTGA+GGG 0.555103 1_2:+837076 Msa0048510:CDS
GAGAGTTGTTGTGGATGATG+GGG 0.555778 1_2:-836709 None:intergenic
CAACATTAGAGTGAATGAAA+AGG 0.556085 1_2:+838025 Msa0048510:CDS
CTTGTGAATGAAGTGGAGGA+TGG 0.558010 1_2:+838104 Msa0048510:CDS
AGATTTCTCTGAGAAGTCAA+GGG 0.560895 1_2:-837772 None:intergenic
GGTGTTGGTGAGAGTTGTTG+TGG 0.563322 1_2:-836718 None:intergenic
CCAATTGTGGGTCTTGCTGG+TGG 0.574159 1_2:+836996 Msa0048510:CDS
TTTCATATTCACAGCTACCT+TGG 0.574412 1_2:-837731 None:intergenic
AGGGATTACCAACACCAAAA+GGG 0.583936 1_2:+838165 Msa0048510:CDS
TGATGAACTTGTGAATGAAG+TGG 0.585794 1_2:+838097 Msa0048510:CDS
ACACCGTCTGCGAAACAAAG+AGG 0.595726 1_2:+837029 Msa0048510:CDS
ACAAATGATTCACCAATTGT+GGG 0.597784 1_2:+836984 Msa0048510:CDS
CAACAATGATGAAGATGATG+TGG 0.602585 1_2:+837899 Msa0048510:CDS
GGCTTGATGAACTGTGTGAA+GGG 0.604878 1_2:+837997 Msa0048510:CDS
AGTGAAGACCCTTATGCAGA+TGG 0.608040 1_2:+837103 Msa0048510:CDS
TGTGGAGGAAGAAATAGCTG+AGG 0.610254 1_2:+837917 Msa0048510:CDS
CATTAGAGTGAATGAAAAGG+TGG 0.614379 1_2:+838028 Msa0048510:CDS
TGCACCTCTGAGGTGACAGA+AGG 0.618247 1_2:+837810 Msa0048510:CDS
TTACTGACTTGAAAGTGGAA+TGG 0.620132 1_2:-836739 None:intergenic
ATCCTGGTGTGTTCTTCACA+CGG 0.624024 1_2:-837055 None:intergenic
CAATGATGAAGATGATGTGG+AGG 0.630227 1_2:+837902 Msa0048510:CDS
ACTTCCTTCTGTCACCTCAG+AGG 0.635704 1_2:-837814 None:intergenic
ACTTGAAAGTGGAATGGTGT+TGG 0.644715 1_2:-836733 None:intergenic
GATCTGGTGAAGCTTTGCTG+AGG 0.645257 1_2:+837075 Msa0048510:CDS
GGGCTTGATGAACTGTGTGA+AGG 0.655575 1_2:+837996 Msa0048510:CDS
AGCCGTGTGAAGAACACACC+AGG 0.662563 1_2:+837053 Msa0048510:CDS
ATCAGAAGAATGCACCTCTG+AGG 0.671388 1_2:+837800 Msa0048510:CDS
TCTGGTGAAGCTTTGCTGAG+GGG 0.673835 1_2:+837077 Msa0048510:CDS
AATTTGCTGGAAAACACACA+AGG 0.675885 1_2:+838057 Msa0048510:CDS
TGAACTTGTGAATGAAGTGG+AGG 0.693057 1_2:+838100 Msa0048510:CDS
ATGAGAGACCACAATTCCTG+TGG 0.704182 1_2:+838336 Msa0048510:three_prime_UTR
TGAGGTGACAGAAGGAAGTG+TGG 0.713802 1_2:+837818 Msa0048510:CDS
CAGGTGGTGAAAATGGACCA+AGG 0.731969 1_2:+837714 Msa0048510:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGTAAATTTATATTTTTA+TGG + chr1_2:836781-836800 Msa0048510:intron 10.0%
!!! TTATATTTTTCTGAAATTTT+AGG + chr1_2:837387-837406 Msa0048510:intron 10.0%
!! AAAAAGAAAAAAATTATGAA+GGG + chr1_2:837976-837995 Msa0048510:CDS 10.0%
!!! CATGTAAATTTATATTTTTA+TGG + chr1_2:836781-836800 Msa0048510:intron 10.0%
!!! TTATATTTTTCTGAAATTTT+AGG + chr1_2:837387-837406 Msa0048510:intron 10.0%
!! AAAAAGAAAAAAATTATGAA+GGG + chr1_2:837976-837995 Msa0048510:CDS 10.0%
!!! ATTTTTTTCAAGATGTTTAT+TGG - chr1_2:836825-836844 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTTTGC+AGG + chr1_2:836891-836910 Msa0048510:intron 15.0%
!! ACTTTATAGATTATATATCT+AGG - chr1_2:837539-837558 None:intergenic 15.0%
!! GAAAAAGAAAAAAATTATGA+AGG + chr1_2:837975-837994 Msa0048510:CDS 15.0%
!!! TTTTATTAAGTATTTGGAAT+TGG - chr1_2:838374-838393 None:intergenic 15.0%
!!! ATTTTTTTCAAGATGTTTAT+TGG - chr1_2:836825-836844 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTTTGC+AGG + chr1_2:836891-836910 Msa0048510:intron 15.0%
!! ACTTTATAGATTATATATCT+AGG - chr1_2:837539-837558 None:intergenic 15.0%
!! GAAAAAGAAAAAAATTATGA+AGG + chr1_2:837975-837994 Msa0048510:CDS 15.0%
!!! TTTTATTAAGTATTTGGAAT+TGG - chr1_2:838374-838393 None:intergenic 15.0%
!! AAACATCTTGAAAAAAATTC+TGG + chr1_2:836827-836846 Msa0048510:intron 20.0%
!! AACATCTTGAAAAAAATTCT+GGG + chr1_2:836828-836847 Msa0048510:intron 20.0%
!! AACATAAAGATTTCAATTAC+TGG - chr1_2:837365-837384 None:intergenic 20.0%
!!! TCAATTGCTTTTGAAAAAAA+TGG + chr1_2:837505-837524 Msa0048510:intron 20.0%
!!! TTTTGAAAAAAATGGAGATT+TGG + chr1_2:837513-837532 Msa0048510:intron 20.0%
!! ATAAGATCTCAATTTAATGA+TGG + chr1_2:837691-837710 Msa0048510:intron 20.0%
!!! GGAACATTTTATTAAGTATT+TGG - chr1_2:838380-838399 None:intergenic 20.0%
!! AAACATCTTGAAAAAAATTC+TGG + chr1_2:836827-836846 Msa0048510:intron 20.0%
!! AACATCTTGAAAAAAATTCT+GGG + chr1_2:836828-836847 Msa0048510:intron 20.0%
!! AACATAAAGATTTCAATTAC+TGG - chr1_2:837365-837384 None:intergenic 20.0%
!!! TCAATTGCTTTTGAAAAAAA+TGG + chr1_2:837505-837524 Msa0048510:intron 20.0%
!!! TTTTGAAAAAAATGGAGATT+TGG + chr1_2:837513-837532 Msa0048510:intron 20.0%
!! ATAAGATCTCAATTTAATGA+TGG + chr1_2:837691-837710 Msa0048510:intron 20.0%
!!! GGAACATTTTATTAAGTATT+TGG - chr1_2:838380-838399 None:intergenic 20.0%
! ATAATGAAAAGAAGTGAAGA+AGG - chr1_2:836599-836618 None:intergenic 25.0%
!!! TTTTTTTACTGACTTGAAAG+TGG - chr1_2:836747-836766 None:intergenic 25.0%
!! GTATTTCATGCATTTTTCTT+TGG - chr1_2:837237-837256 None:intergenic 25.0%
!!! GCAAGTCTTTTTAATTAGTT+TGG + chr1_2:837305-837324 Msa0048510:intron 25.0%
! CATGTGAGTTTCAATAAAAT+GGG - chr1_2:837332-837351 None:intergenic 25.0%
! ACATGTGAGTTTCAATAAAA+TGG - chr1_2:837333-837352 None:intergenic 25.0%
! CATAAATAGTTCATTAAGTG+AGG - chr1_2:837571-837590 None:intergenic 25.0%
! CACTTAATGAACTATTTATG+TGG + chr1_2:837571-837590 Msa0048510:intron 25.0%
! ATAATGAAAAGAAGTGAAGA+AGG - chr1_2:836599-836618 None:intergenic 25.0%
!!! TTTTTTTACTGACTTGAAAG+TGG - chr1_2:836747-836766 None:intergenic 25.0%
!! GTATTTCATGCATTTTTCTT+TGG - chr1_2:837237-837256 None:intergenic 25.0%
!!! GCAAGTCTTTTTAATTAGTT+TGG + chr1_2:837305-837324 Msa0048510:intron 25.0%
! CATGTGAGTTTCAATAAAAT+GGG - chr1_2:837332-837351 None:intergenic 25.0%
! ACATGTGAGTTTCAATAAAA+TGG - chr1_2:837333-837352 None:intergenic 25.0%
! CATAAATAGTTCATTAAGTG+AGG - chr1_2:837571-837590 None:intergenic 25.0%
! CACTTAATGAACTATTTATG+TGG + chr1_2:837571-837590 Msa0048510:intron 25.0%
CAATCTTCAATCACTTTCAA+TGG + chr1_2:836683-836702 Msa0048510:exon 30.0%
AGATTCTGTGTCAAAATCAA+AGG + chr1_2:836923-836942 Msa0048510:CDS 30.0%
GATTCTGTGTCAAAATCAAA+GGG + chr1_2:836924-836943 Msa0048510:CDS 30.0%
ACAAATGATTCACCAATTGT+GGG + chr1_2:836984-837003 Msa0048510:CDS 30.0%
TCAACAACAATCAATTTCTC+AGG + chr1_2:837193-837212 Msa0048510:CDS 30.0%
! CATGCATTTTTCTTTGGTTA+GGG - chr1_2:837231-837250 None:intergenic 30.0%
! TCATGCATTTTTCTTTGGTT+AGG - chr1_2:837232-837251 None:intergenic 30.0%
! AGTGATTGTATAAAGTGTCT+TGG + chr1_2:837631-837650 Msa0048510:intron 30.0%
CAACATTAGAGTGAATGAAA+AGG + chr1_2:838025-838044 Msa0048510:CDS 30.0%
CAATCTTCAATCACTTTCAA+TGG + chr1_2:836683-836702 Msa0048510:exon 30.0%
AGATTCTGTGTCAAAATCAA+AGG + chr1_2:836923-836942 Msa0048510:CDS 30.0%
GATTCTGTGTCAAAATCAAA+GGG + chr1_2:836924-836943 Msa0048510:CDS 30.0%
ACAAATGATTCACCAATTGT+GGG + chr1_2:836984-837003 Msa0048510:CDS 30.0%
TCAACAACAATCAATTTCTC+AGG + chr1_2:837193-837212 Msa0048510:CDS 30.0%
! CATGCATTTTTCTTTGGTTA+GGG - chr1_2:837231-837250 None:intergenic 30.0%
! TCATGCATTTTTCTTTGGTT+AGG - chr1_2:837232-837251 None:intergenic 30.0%
! AGTGATTGTATAAAGTGTCT+TGG + chr1_2:837631-837650 Msa0048510:intron 30.0%
CAACATTAGAGTGAATGAAA+AGG + chr1_2:838025-838044 Msa0048510:CDS 30.0%
!! TTACTGACTTGAAAGTGGAA+TGG - chr1_2:836742-836761 None:intergenic 35.0%
GACAAATGATTCACCAATTG+TGG + chr1_2:836983-837002 Msa0048510:CDS 35.0%
TTCTTCAACCATCTGCATAA+GGG - chr1_2:837114-837133 None:intergenic 35.0%
! TGTCTTGGTAGCATAATTTG+TGG + chr1_2:837646-837665 Msa0048510:intron 35.0%
GATCTCAATTTAATGATGGC+AGG + chr1_2:837695-837714 Msa0048510:intron 35.0%
TTTCATATTCACAGCTACCT+TGG - chr1_2:837734-837753 None:intergenic 35.0%
! AGATTTCTCTGAGAAGTCAA+GGG - chr1_2:837775-837794 None:intergenic 35.0%
TAGATGAAGATGCTTCTATC+TGG + chr1_2:837856-837875 Msa0048510:CDS 35.0%
CAACAATGATGAAGATGATG+TGG + chr1_2:837899-837918 Msa0048510:CDS 35.0%
CATTAGAGTGAATGAAAAGG+TGG + chr1_2:838028-838047 Msa0048510:CDS 35.0%
! GTGTGTTTTCCAGCAAATTT+TGG - chr1_2:838056-838075 None:intergenic 35.0%
!! AATTTGCTGGAAAACACACA+AGG + chr1_2:838057-838076 Msa0048510:CDS 35.0%
TGATGAACTTGTGAATGAAG+TGG + chr1_2:838097-838116 Msa0048510:CDS 35.0%
ACCTAATGTGTTGCATTTGA+AGG + chr1_2:838145-838164 Msa0048510:CDS 35.0%
CCTAATGTGTTGCATTTGAA+GGG + chr1_2:838146-838165 Msa0048510:CDS 35.0%
! AAACGAAGATGTTTCCCTTT+TGG - chr1_2:838182-838201 None:intergenic 35.0%
!! GAAACATCTTCGTTTTTCTG+AGG + chr1_2:838187-838206 Msa0048510:CDS 35.0%
AAGTTCTGCTAAGTGATTCA+TGG + chr1_2:838252-838271 Msa0048510:three_prime_UTR 35.0%
TTGGAATATTTGAAGACCAC+AGG - chr1_2:838355-838374 None:intergenic 35.0%
!! TTACTGACTTGAAAGTGGAA+TGG - chr1_2:836742-836761 None:intergenic 35.0%
GACAAATGATTCACCAATTG+TGG + chr1_2:836983-837002 Msa0048510:CDS 35.0%
TTCTTCAACCATCTGCATAA+GGG - chr1_2:837114-837133 None:intergenic 35.0%
! TGTCTTGGTAGCATAATTTG+TGG + chr1_2:837646-837665 Msa0048510:intron 35.0%
GATCTCAATTTAATGATGGC+AGG + chr1_2:837695-837714 Msa0048510:intron 35.0%
TTTCATATTCACAGCTACCT+TGG - chr1_2:837734-837753 None:intergenic 35.0%
! AGATTTCTCTGAGAAGTCAA+GGG - chr1_2:837775-837794 None:intergenic 35.0%
TAGATGAAGATGCTTCTATC+TGG + chr1_2:837856-837875 Msa0048510:CDS 35.0%
CAACAATGATGAAGATGATG+TGG + chr1_2:837899-837918 Msa0048510:CDS 35.0%
CATTAGAGTGAATGAAAAGG+TGG + chr1_2:838028-838047 Msa0048510:CDS 35.0%
! GTGTGTTTTCCAGCAAATTT+TGG - chr1_2:838056-838075 None:intergenic 35.0%
!! AATTTGCTGGAAAACACACA+AGG + chr1_2:838057-838076 Msa0048510:CDS 35.0%
TGATGAACTTGTGAATGAAG+TGG + chr1_2:838097-838116 Msa0048510:CDS 35.0%
ACCTAATGTGTTGCATTTGA+AGG + chr1_2:838145-838164 Msa0048510:CDS 35.0%
CCTAATGTGTTGCATTTGAA+GGG + chr1_2:838146-838165 Msa0048510:CDS 35.0%
! AAACGAAGATGTTTCCCTTT+TGG - chr1_2:838182-838201 None:intergenic 35.0%
!! GAAACATCTTCGTTTTTCTG+AGG + chr1_2:838187-838206 Msa0048510:CDS 35.0%
AAGTTCTGCTAAGTGATTCA+TGG + chr1_2:838252-838271 Msa0048510:three_prime_UTR 35.0%
TTGGAATATTTGAAGACCAC+AGG - chr1_2:838355-838374 None:intergenic 35.0%
TGAGAGTTGTTGTGGATGAT+GGG - chr1_2:836713-836732 None:intergenic 40.0%
ACTTGAAAGTGGAATGGTGT+TGG - chr1_2:836736-836755 None:intergenic 40.0%
TCAAGATCGATGTGCATTGA+TGG + chr1_2:836956-836975 Msa0048510:CDS 40.0%
CTTCTTCAACCATCTGCATA+AGG - chr1_2:837115-837134 None:intergenic 40.0%
TATGCAGATGGTTGAAGAAG+AGG + chr1_2:837115-837134 Msa0048510:CDS 40.0%
CCAGAAAGACTCTGAATTTG+AGG - chr1_2:837146-837165 None:intergenic 40.0%
CCTCAAATTCAGAGTCTTTC+TGG + chr1_2:837143-837162 Msa0048510:CDS 40.0%
CTCAATTTAATGATGGCAGG+TGG + chr1_2:837698-837717 Msa0048510:intron 40.0%
! GAGATTTCTCTGAGAAGTCA+AGG - chr1_2:837776-837795 None:intergenic 40.0%
CAATGATGAAGATGATGTGG+AGG + chr1_2:837902-837921 Msa0048510:CDS 40.0%
AAGGTGGTTCCAAAATTTGC+TGG + chr1_2:838044-838063 Msa0048510:CDS 40.0%
TGAACTTGTGAATGAAGTGG+AGG + chr1_2:838100-838119 Msa0048510:CDS 40.0%
CCCTTCAAATGCAACACATT+AGG - chr1_2:838149-838168 None:intergenic 40.0%
AAGGGATTACCAACACCAAA+AGG + chr1_2:838164-838183 Msa0048510:CDS 40.0%
AGGGATTACCAACACCAAAA+GGG + chr1_2:838165-838184 Msa0048510:CDS 40.0%
!! AGATGTTTCCCTTTTGGTGT+TGG - chr1_2:838176-838195 None:intergenic 40.0%
!! ACATCTTCGTTTTTCTGAGG+AGG + chr1_2:838190-838209 Msa0048510:CDS 40.0%
TTTGAAGACCACAGGAATTG+TGG - chr1_2:838347-838366 None:intergenic 40.0%
TGAGAGTTGTTGTGGATGAT+GGG - chr1_2:836713-836732 None:intergenic 40.0%
ACTTGAAAGTGGAATGGTGT+TGG - chr1_2:836736-836755 None:intergenic 40.0%
TCAAGATCGATGTGCATTGA+TGG + chr1_2:836956-836975 Msa0048510:CDS 40.0%
CTTCTTCAACCATCTGCATA+AGG - chr1_2:837115-837134 None:intergenic 40.0%
TATGCAGATGGTTGAAGAAG+AGG + chr1_2:837115-837134 Msa0048510:CDS 40.0%
CCAGAAAGACTCTGAATTTG+AGG - chr1_2:837146-837165 None:intergenic 40.0%
CCTCAAATTCAGAGTCTTTC+TGG + chr1_2:837143-837162 Msa0048510:CDS 40.0%
CTCAATTTAATGATGGCAGG+TGG + chr1_2:837698-837717 Msa0048510:intron 40.0%
! GAGATTTCTCTGAGAAGTCA+AGG - chr1_2:837776-837795 None:intergenic 40.0%
CAATGATGAAGATGATGTGG+AGG + chr1_2:837902-837921 Msa0048510:CDS 40.0%
AAGGTGGTTCCAAAATTTGC+TGG + chr1_2:838044-838063 Msa0048510:CDS 40.0%
TGAACTTGTGAATGAAGTGG+AGG + chr1_2:838100-838119 Msa0048510:CDS 40.0%
CCCTTCAAATGCAACACATT+AGG - chr1_2:838149-838168 None:intergenic 40.0%
AAGGGATTACCAACACCAAA+AGG + chr1_2:838164-838183 Msa0048510:CDS 40.0%
AGGGATTACCAACACCAAAA+GGG + chr1_2:838165-838184 Msa0048510:CDS 40.0%
!! AGATGTTTCCCTTTTGGTGT+TGG - chr1_2:838176-838195 None:intergenic 40.0%
!! ACATCTTCGTTTTTCTGAGG+AGG + chr1_2:838190-838209 Msa0048510:CDS 40.0%
TTTGAAGACCACAGGAATTG+TGG - chr1_2:838347-838366 None:intergenic 40.0%
GAGAGTTGTTGTGGATGATG+GGG - chr1_2:836712-836731 None:intergenic 45.0%
GTGAGAGTTGTTGTGGATGA+TGG - chr1_2:836714-836733 None:intergenic 45.0%
! CTACCTCTTTGTTTCGCAGA+CGG - chr1_2:837035-837054 None:intergenic 45.0%
ATCCTGGTGTGTTCTTCACA+CGG - chr1_2:837058-837077 None:intergenic 45.0%
ATCTGGTGAAGCTTTGCTGA+GGG + chr1_2:837076-837095 Msa0048510:CDS 45.0%
AGTGAAGACCCTTATGCAGA+TGG + chr1_2:837103-837122 Msa0048510:CDS 45.0%
ATGATGGCAGGTGGTGAAAA+TGG + chr1_2:837707-837726 Msa0048510:intron 45.0%
ATCAGAAGAATGCACCTCTG+AGG + chr1_2:837800-837819 Msa0048510:CDS 45.0%
TGTGGAGGAAGAAATAGCTG+AGG + chr1_2:837917-837936 Msa0048510:CDS 45.0%
GGCTTGATGAACTGTGTGAA+GGG + chr1_2:837997-838016 Msa0048510:CDS 45.0%
CTTGTGAATGAAGTGGAGGA+TGG + chr1_2:838104-838123 Msa0048510:CDS 45.0%
!! TCGTTTTTCTGAGGAGGAAG+AGG + chr1_2:838196-838215 Msa0048510:CDS 45.0%
!! TTTTCTGAGGAGGAAGAGGA+AGG + chr1_2:838200-838219 Msa0048510:CDS 45.0%
ATGAGAGACCACAATTCCTG+TGG + chr1_2:838336-838355 Msa0048510:three_prime_UTR 45.0%
GAGAGTTGTTGTGGATGATG+GGG - chr1_2:836712-836731 None:intergenic 45.0%
GTGAGAGTTGTTGTGGATGA+TGG - chr1_2:836714-836733 None:intergenic 45.0%
! CTACCTCTTTGTTTCGCAGA+CGG - chr1_2:837035-837054 None:intergenic 45.0%
ATCCTGGTGTGTTCTTCACA+CGG - chr1_2:837058-837077 None:intergenic 45.0%
ATCTGGTGAAGCTTTGCTGA+GGG + chr1_2:837076-837095 Msa0048510:CDS 45.0%
AGTGAAGACCCTTATGCAGA+TGG + chr1_2:837103-837122 Msa0048510:CDS 45.0%
ATGATGGCAGGTGGTGAAAA+TGG + chr1_2:837707-837726 Msa0048510:intron 45.0%
ATCAGAAGAATGCACCTCTG+AGG + chr1_2:837800-837819 Msa0048510:CDS 45.0%
TGTGGAGGAAGAAATAGCTG+AGG + chr1_2:837917-837936 Msa0048510:CDS 45.0%
GGCTTGATGAACTGTGTGAA+GGG + chr1_2:837997-838016 Msa0048510:CDS 45.0%
CTTGTGAATGAAGTGGAGGA+TGG + chr1_2:838104-838123 Msa0048510:CDS 45.0%
!! TCGTTTTTCTGAGGAGGAAG+AGG + chr1_2:838196-838215 Msa0048510:CDS 45.0%
!! TTTTCTGAGGAGGAAGAGGA+AGG + chr1_2:838200-838219 Msa0048510:CDS 45.0%
ATGAGAGACCACAATTCCTG+TGG + chr1_2:838336-838355 Msa0048510:three_prime_UTR 45.0%
!! GGTGTTGGTGAGAGTTGTTG+TGG - chr1_2:836721-836740 None:intergenic 50.0%
TCACCAATTGTGGGTCTTGC+TGG + chr1_2:836993-837012 Msa0048510:CDS 50.0%
ACACCGTCTGCGAAACAAAG+AGG + chr1_2:837029-837048 Msa0048510:CDS 50.0%
GTGAAGAACACACCAGGATC+TGG + chr1_2:837059-837078 Msa0048510:CDS 50.0%
AGCAAAGCTTCACCAGATCC+TGG - chr1_2:837074-837093 None:intergenic 50.0%
GATCTGGTGAAGCTTTGCTG+AGG + chr1_2:837075-837094 Msa0048510:CDS 50.0%
TCTGGTGAAGCTTTGCTGAG+GGG + chr1_2:837077-837096 Msa0048510:CDS 50.0%
CAGGTGGTGAAAATGGACCA+AGG + chr1_2:837714-837733 Msa0048510:intron 50.0%
! CTCTGAGAAGTCAAGGGACT+TGG - chr1_2:837769-837788 None:intergenic 50.0%
ACTTCCTTCTGTCACCTCAG+AGG - chr1_2:837817-837836 None:intergenic 50.0%
TGAGGTGACAGAAGGAAGTG+TGG + chr1_2:837818-837837 Msa0048510:CDS 50.0%
! GTGACAGAAGGAAGTGTGGT+TGG + chr1_2:837822-837841 Msa0048510:CDS 50.0%
GGGCTTGATGAACTGTGTGA+AGG + chr1_2:837996-838015 Msa0048510:CDS 50.0%
!! GGTGTTGGTGAGAGTTGTTG+TGG - chr1_2:836721-836740 None:intergenic 50.0%
TCACCAATTGTGGGTCTTGC+TGG + chr1_2:836993-837012 Msa0048510:CDS 50.0%
ACACCGTCTGCGAAACAAAG+AGG + chr1_2:837029-837048 Msa0048510:CDS 50.0%
GTGAAGAACACACCAGGATC+TGG + chr1_2:837059-837078 Msa0048510:CDS 50.0%
AGCAAAGCTTCACCAGATCC+TGG - chr1_2:837074-837093 None:intergenic 50.0%
GATCTGGTGAAGCTTTGCTG+AGG + chr1_2:837075-837094 Msa0048510:CDS 50.0%
TCTGGTGAAGCTTTGCTGAG+GGG + chr1_2:837077-837096 Msa0048510:CDS 50.0%
CAGGTGGTGAAAATGGACCA+AGG + chr1_2:837714-837733 Msa0048510:intron 50.0%
! CTCTGAGAAGTCAAGGGACT+TGG - chr1_2:837769-837788 None:intergenic 50.0%
ACTTCCTTCTGTCACCTCAG+AGG - chr1_2:837817-837836 None:intergenic 50.0%
TGAGGTGACAGAAGGAAGTG+TGG + chr1_2:837818-837837 Msa0048510:CDS 50.0%
! GTGACAGAAGGAAGTGTGGT+TGG + chr1_2:837822-837841 Msa0048510:CDS 50.0%
GGGCTTGATGAACTGTGTGA+AGG + chr1_2:837996-838015 Msa0048510:CDS 50.0%
CCACCAGCAAGACCCACAAT+TGG - chr1_2:836999-837018 None:intergenic 55.0%
CCAATTGTGGGTCTTGCTGG+TGG + chr1_2:836996-837015 Msa0048510:CDS 55.0%
AGCCGTGTGAAGAACACACC+AGG + chr1_2:837053-837072 Msa0048510:CDS 55.0%
!! TGCACCTCTGAGGTGACAGA+AGG + chr1_2:837810-837829 Msa0048510:CDS 55.0%
CCACCAGCAAGACCCACAAT+TGG - chr1_2:836999-837018 None:intergenic 55.0%
CCAATTGTGGGTCTTGCTGG+TGG + chr1_2:836996-837015 Msa0048510:CDS 55.0%
AGCCGTGTGAAGAACACACC+AGG + chr1_2:837053-837072 Msa0048510:CDS 55.0%
!! TGCACCTCTGAGGTGACAGA+AGG + chr1_2:837810-837829 Msa0048510:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 836593 838414 836593 ID=Msa0048510;Name=Msa0048510
chr1_2 mRNA 836593 838414 836593 ID=Msa0048510-mRNA-1;Parent=Msa0048510;Name=Msa0048510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=109|1|1|1|1|1|3|176|291
chr1_2 exon 836593 836753 836593 ID=Msa0048510-mRNA-1:exon:171;Parent=Msa0048510-mRNA-1
chr1_2 exon 836913 837214 836913 ID=Msa0048510-mRNA-1:exon:172;Parent=Msa0048510-mRNA-1
chr1_2 exon 837717 838414 837717 ID=Msa0048510-mRNA-1:exon:173;Parent=Msa0048510-mRNA-1
chr1_2 five_prime_UTR 836593 836701 836593 ID=Msa0048510-mRNA-1:five_prime_utr;Parent=Msa0048510-mRNA-1
chr1_2 CDS 836702 836753 836702 ID=Msa0048510-mRNA-1:cds;Parent=Msa0048510-mRNA-1
chr1_2 CDS 836913 837214 836913 ID=Msa0048510-mRNA-1:cds;Parent=Msa0048510-mRNA-1
chr1_2 CDS 837717 838238 837717 ID=Msa0048510-mRNA-1:cds;Parent=Msa0048510-mRNA-1
chr1_2 three_prime_UTR 838239 838414 838239 ID=Msa0048510-mRNA-1:three_prime_utr;Parent=Msa0048510-mRNA-1
Gene Sequence

>Msa0048510

ATGGAAACCCCATCATCCACAACAACTCTCACCAACACCATTCCACTTTCAAGAAAATTTGAAGATTCTGTGTCAAAATCAAAGGGTCAACAAAATCAAGATCGATGTGCATTGATGGACATGACAAATGATTCACCAATTGTGGGTCTTGCTGGTGGAAATCTCGAGACACCGTCTGCGAAACAAAGAGGTAGCCGTGTGAAGAACACACCAGGATCTGGTGAAGCTTTGCTGAGGGGACAAGTGAAGACCCTTATGCAGATGGTTGAAGAAGAGGCTTCTCCTCAAATTCAGAGTCTTTCTGGTAGTGTCAATAACAATGCTTCTGTTGTTCAACAACAATCAATTTCTCAGGTGGTGAAAATGGACCAAGGTAGCTGTGAATATGAAAAGTGTGAGATAACCAAGTCCCTTGACTTCTCAGAGAAATCTCAAGTATCAGAAGAATGCACCTCTGAGGTGACAGAAGGAAGTGTGGTTGGTAGCTGCAGCATAGATGAAGATGCTTCTATCTGGTCAATGCAAGTCAACTCATGCAACAATGATGAAGATGATGTGGAGGAAGAAATAGCTGAGGAAGATGAAGAAGAAGAAGAAGACTACTATGATGTTGAAAAAGAAAAAAATTATGAAGGGCTTGATGAACTGTGTGAAGGGATAAACAACATTAGAGTGAATGAAAAGGTGGTTCCAAAATTTGCTGGAAAACACACAAGGTTTGTTTACAACAGTGATGATGAACTTGTGAATGAAGTGGAGGATGGAAGTGTGAATGCTGATTCACCTAATGTGTTGCATTTGAAGGGATTACCAACACCAAAAGGGAAACATCTTCGTTTTTCTGAGGAGGAAGAGGAAGGAAAATCTGCTAAGTGA

Protein sequence

>Msa0048510

METPSSTTTLTNTIPLSRKFEDSVSKSKGQQNQDRCALMDMTNDSPIVGLAGGNLETPSAKQRGSRVKNTPGSGEALLRGQVKTLMQMVEEEASPQIQSLSGSVNNNASVVQQQSISQVVKMDQGSCEYEKCEITKSLDFSEKSQVSEECTSEVTEGSVVGSCSIDEDASIWSMQVNSCNNDEDDVEEEIAEEDEEEEEDYYDVEKEKNYEGLDELCEGINNIRVNEKVVPKFAGKHTRFVYNSDDELVNEVEDGSVNADSPNVLHLKGLPTPKGKHLRFSEEEEEGKSAK*