Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162180 | XP_003625175.1 | 93.254 | 252 | 14 | 2 | 1 | 250 | 1 | 251 | 1.11e-158 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162180 | G7KTL5 | 93.254 | 252 | 14 | 2 | 1 | 250 | 1 | 251 | 5.28e-159 | 450 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa1162180 | 0.802168 | 6.377548e-49 | -8.615850e-47 |
| Msa0016040 | Msa1162180 | 0.814141 | 1.791783e-51 | -8.615850e-47 |
| Msa0029960 | Msa1162180 | 0.805935 | 1.049845e-49 | -8.615850e-47 |
| Msa0032970 | Msa1162180 | 0.803037 | 4.220158e-49 | -8.615850e-47 |
| Msa0032980 | Msa1162180 | 0.812596 | 3.915213e-51 | -8.615850e-47 |
| Msa0048510 | Msa1162180 | 0.820150 | 7.986688e-53 | -8.615850e-47 |
| Msa0050660 | Msa1162180 | 0.834334 | 3.182393e-56 | -8.615850e-47 |
| Msa0050700 | Msa1162180 | 0.833668 | 4.671375e-56 | -8.615850e-47 |
| Msa0050790 | Msa1162180 | 0.823178 | 1.593172e-53 | -8.615850e-47 |
| Msa0053070 | Msa1162180 | 0.818637 | 1.766261e-52 | -8.615850e-47 |
| Msa0056180 | Msa1162180 | 0.803283 | 3.754191e-49 | -8.615850e-47 |
| Msa0062340 | Msa1162180 | 0.816205 | 6.234039e-52 | -8.615850e-47 |
| Msa0067060 | Msa1162180 | 0.802803 | 4.717617e-49 | -8.615850e-47 |
| Msa0068150 | Msa1162180 | 0.812428 | 4.260430e-51 | -8.615850e-47 |
| Msa0077560 | Msa1162180 | 0.803698 | 3.078296e-49 | -8.615850e-47 |
| Msa0091350 | Msa1162180 | 0.808026 | 3.790806e-50 | -8.615850e-47 |
| Msa0093860 | Msa1162180 | 0.812127 | 4.957344e-51 | -8.615850e-47 |
| Msa0098410 | Msa1162180 | 0.808927 | 2.435302e-50 | -8.615850e-47 |
| Msa0115550 | Msa1162180 | 0.832612 | 8.559036e-56 | -8.615850e-47 |
| Msa0606100 | Msa1162180 | 0.814312 | 1.642834e-51 | -8.615850e-47 |
| Msa0607800 | Msa1162180 | 0.825038 | 5.826738e-54 | -8.615850e-47 |
| Msa0613630 | Msa1162180 | 0.818708 | 1.702766e-52 | -8.615850e-47 |
| Msa0621710 | Msa1162180 | 0.838006 | 3.716141e-57 | -8.615850e-47 |
| Msa0622920 | Msa1162180 | 0.801818 | 7.525239e-49 | -8.615850e-47 |
| Msa0647050 | Msa1162180 | 0.813790 | 2.141690e-51 | -8.615850e-47 |
| Msa0648040 | Msa1162180 | 0.816745 | 4.720033e-52 | -8.615850e-47 |
| Msa0657700 | Msa1162180 | 0.825891 | 3.660412e-54 | -8.615850e-47 |
| Msa0666700 | Msa1162180 | 0.824645 | 7.213902e-54 | -8.615850e-47 |
| Msa0668900 | Msa1162180 | 0.815774 | 7.782036e-52 | -8.615850e-47 |
| Msa0682770 | Msa1162180 | 0.804623 | 1.976096e-49 | -8.615850e-47 |
| Msa0687090 | Msa1162180 | 0.806752 | 7.061198e-50 | -8.615850e-47 |
| Msa0690740 | Msa1162180 | 0.819460 | 1.148118e-52 | -8.615850e-47 |
| Msa0702810 | Msa1162180 | 0.808664 | 2.771783e-50 | -8.615850e-47 |
| Msa0709440 | Msa1162180 | 0.833587 | 4.894184e-56 | -8.615850e-47 |
| Msa0713920 | Msa1162180 | 0.805359 | 1.386867e-49 | -8.615850e-47 |
| Msa0714520 | Msa1162180 | 0.854433 | 1.235066e-61 | -8.615850e-47 |
| Msa0716480 | Msa1162180 | 0.829850 | 4.085996e-55 | -8.615850e-47 |
| Msa0717900 | Msa1162180 | 0.807184 | 5.722000e-50 | -8.615850e-47 |
| Msa0722220 | Msa1162180 | 0.854840 | 9.411116e-62 | -8.615850e-47 |
| Msa0735780 | Msa1162180 | 0.827467 | 1.539426e-54 | -8.615850e-47 |
| Msa0737990 | Msa1162180 | 0.830839 | 2.343087e-55 | -8.615850e-47 |
| Msa0738700 | Msa1162180 | 0.803876 | 2.827994e-49 | -8.615850e-47 |
| Msa0743440 | Msa1162180 | 0.847380 | 1.199885e-59 | -8.615850e-47 |
| Msa0745720 | Msa1162180 | 0.803254 | 3.805705e-49 | -8.615850e-47 |
| Msa0747740 | Msa1162180 | 0.825301 | 5.050485e-54 | -8.615850e-47 |
| Msa0758650 | Msa1162180 | 0.830560 | 2.742414e-55 | -8.615850e-47 |
| Msa0761670 | Msa1162180 | 0.817719 | 2.850723e-52 | -8.615850e-47 |
| Msa0763550 | Msa1162180 | 0.841131 | 5.721389e-58 | -8.615850e-47 |
| Msa0773630 | Msa1162180 | 0.820902 | 5.366954e-53 | -8.615850e-47 |
| Msa0778550 | Msa1162180 | 0.823646 | 1.238519e-53 | -8.615850e-47 |
| Msa0780910 | Msa1162180 | 0.827655 | 1.387930e-54 | -8.615850e-47 |
| Msa0805680 | Msa1162180 | 0.851773 | 7.134561e-61 | -8.615850e-47 |
| Msa0811020 | Msa1162180 | 0.825676 | 4.116343e-54 | -8.615850e-47 |
| Msa0817360 | Msa1162180 | 0.805703 | 1.174573e-49 | -8.615850e-47 |
| Msa0821160 | Msa1162180 | 0.823495 | 1.342949e-53 | -8.615850e-47 |
| Msa0824450 | Msa1162180 | 0.807175 | 5.746474e-50 | -8.615850e-47 |
| Msa0828970 | Msa1162180 | 0.814831 | 1.261143e-51 | -8.615850e-47 |
| Msa0835350 | Msa1162180 | 0.803343 | 3.648207e-49 | -8.615850e-47 |
| Msa0837460 | Msa1162180 | 0.829313 | 5.519213e-55 | -8.615850e-47 |
| Msa0121330 | Msa1162180 | 0.813118 | 3.009012e-51 | -8.615850e-47 |
| Msa0127680 | Msa1162180 | 0.808380 | 3.187050e-50 | -8.615850e-47 |
| Msa0128310 | Msa1162180 | 0.800596 | 1.338260e-48 | -8.615850e-47 |
| Msa0140380 | Msa1162180 | 0.843622 | 1.251072e-58 | -8.615850e-47 |
| Msa0159590 | Msa1162180 | 0.820435 | 6.869422e-53 | -8.615850e-47 |
| Msa0160160 | Msa1162180 | 0.808024 | 3.793838e-50 | -8.615850e-47 |
| Msa0160170 | Msa1162180 | 0.808573 | 2.898943e-50 | -8.615850e-47 |
| Msa0165830 | Msa1162180 | 0.818858 | 1.573906e-52 | -8.615850e-47 |
| Msa0190570 | Msa1162180 | 0.819314 | 1.239776e-52 | -8.615850e-47 |
| Msa0200050 | Msa1162180 | 0.835544 | 1.577211e-56 | -8.615850e-47 |
| Msa0213030 | Msa1162180 | 0.800328 | 1.517431e-48 | -8.615850e-47 |
| Msa0232760 | Msa1162180 | 0.841554 | 4.428040e-58 | -8.615850e-47 |
| Msa0233020 | Msa1162180 | 0.801208 | 1.003609e-48 | -8.615850e-47 |
| Msa0367520 | Msa1162180 | 0.841413 | 4.822982e-58 | -8.615850e-47 |
| Msa0368860 | Msa1162180 | 0.828814 | 7.292485e-55 | -8.615850e-47 |
| Msa0373500 | Msa1162180 | 0.809267 | 2.059100e-50 | -8.615850e-47 |
| Msa0373590 | Msa1162180 | 0.814234 | 1.708806e-51 | -8.615850e-47 |
| Msa0377710 | Msa1162180 | 0.813736 | 2.200389e-51 | -8.615850e-47 |
| Msa0383000 | Msa1162180 | 0.844882 | 5.740723e-59 | -8.615850e-47 |
| Msa0400000 | Msa1162180 | 0.809395 | 1.933171e-50 | -8.615850e-47 |
| Msa0416160 | Msa1162180 | 0.808793 | 2.601364e-50 | -8.615850e-47 |
| Msa0432010 | Msa1162180 | 0.830240 | 3.283171e-55 | -8.615850e-47 |
| Msa0433150 | Msa1162180 | 0.840891 | 6.614669e-58 | -8.615850e-47 |
| Msa0433760 | Msa1162180 | 0.805974 | 1.030267e-49 | -8.615850e-47 |
| Msa0436330 | Msa1162180 | 0.801117 | 1.047382e-48 | -8.615850e-47 |
| Msa0462780 | Msa1162180 | 0.830413 | 2.977697e-55 | -8.615850e-47 |
| Msa0477630 | Msa1162180 | 0.802314 | 5.949276e-49 | -8.615850e-47 |
| Msa0480730 | Msa1162180 | 0.817446 | 3.284394e-52 | -8.615850e-47 |
| Msa0481890 | Msa1162180 | 0.833276 | 5.851342e-56 | -8.615850e-47 |
| Msa0989370 | Msa1162180 | 0.816166 | 6.361782e-52 | -8.615850e-47 |
| Msa1002640 | Msa1162180 | 0.832399 | 9.663415e-56 | -8.615850e-47 |
| Msa1034810 | Msa1162180 | 0.859028 | 5.491219e-63 | -8.615850e-47 |
| Msa1035570 | Msa1162180 | 0.820593 | 6.318799e-53 | -8.615850e-47 |
| Msa1035610 | Msa1162180 | 0.818331 | 2.072266e-52 | -8.615850e-47 |
| Msa1035650 | Msa1162180 | 0.801429 | 9.043853e-49 | -8.615850e-47 |
| Msa1042190 | Msa1162180 | 0.803578 | 3.259978e-49 | -8.615850e-47 |
| Msa1059020 | Msa1162180 | 0.838871 | 2.222806e-57 | -8.615850e-47 |
| Msa1078880 | Msa1162180 | 0.832747 | 7.923429e-56 | -8.615850e-47 |
| Msa1078970 | Msa1162180 | 0.822484 | 2.311099e-53 | -8.615850e-47 |
| Msa1081390 | Msa1162180 | 0.841758 | 3.912199e-58 | -8.615850e-47 |
| Msa1084530 | Msa1162180 | 0.838047 | 3.625874e-57 | -8.615850e-47 |
| Msa1092420 | Msa1162180 | 0.832107 | 1.141809e-55 | -8.615850e-47 |
| Msa1104220 | Msa1162180 | 0.800736 | 1.253215e-48 | -8.615850e-47 |
| Msa0242590 | Msa1162180 | 0.806131 | 9.545015e-50 | -8.615850e-47 |
| Msa0269210 | Msa1162180 | 0.803612 | 3.208483e-49 | -8.615850e-47 |
| Msa0272260 | Msa1162180 | 0.821976 | 3.032453e-53 | -8.615850e-47 |
| Msa0280790 | Msa1162180 | 0.817049 | 4.032839e-52 | -8.615850e-47 |
| Msa1114630 | Msa1162180 | 0.803263 | 3.789191e-49 | -8.615850e-47 |
| Msa1115710 | Msa1162180 | 0.876318 | 1.535680e-68 | -8.615850e-47 |
| Msa1116190 | Msa1162180 | 0.818349 | 2.053509e-52 | -8.615850e-47 |
| Msa1116220 | Msa1162180 | 0.840965 | 6.328689e-58 | -8.615850e-47 |
| Msa1116660 | Msa1162180 | 0.816246 | 6.103395e-52 | -8.615850e-47 |
| Msa1125820 | Msa1162180 | 0.841434 | 4.762310e-58 | -8.615850e-47 |
| Msa1125990 | Msa1162180 | 0.837127 | 6.243685e-57 | -8.615850e-47 |
| Msa1132530 | Msa1162180 | 0.808387 | 3.175441e-50 | -8.615850e-47 |
| Msa1159590 | Msa1162180 | 0.809126 | 2.206875e-50 | -8.615850e-47 |
| Msa1162180 | Msa1162880 | 0.813593 | 2.365899e-51 | -8.615850e-47 |
| Msa1162180 | Msa1166440 | 0.825419 | 4.735466e-54 | -8.615850e-47 |
| Msa1162180 | Msa1167470 | 0.806375 | 8.479740e-50 | -8.615850e-47 |
| Msa1162180 | Msa1169190 | 0.830461 | 2.898142e-55 | -8.615850e-47 |
| Msa1162180 | Msa1171290 | 0.827372 | 1.622070e-54 | -8.615850e-47 |
| Msa1162180 | Msa1190390 | 0.805423 | 1.344610e-49 | -8.615850e-47 |
| Msa1162180 | Msa1213830 | 0.827657 | 1.385986e-54 | -8.615850e-47 |
| Msa1162180 | Msa1214350 | 0.848113 | 7.535409e-60 | -8.615850e-47 |
| Msa1162180 | Msa1215870 | 0.811408 | 7.108438e-51 | -8.615850e-47 |
| Msa1162180 | Msa1218820 | 0.809689 | 1.671600e-50 | -8.615850e-47 |
| Msa1162180 | Msa1223390 | 0.807069 | 6.050945e-50 | -8.615850e-47 |
| Msa1162180 | Msa1254540 | 0.844340 | 8.033610e-59 | -8.615850e-47 |
| Msa1162180 | Msa1260710 | 0.800071 | 1.711860e-48 | -8.615850e-47 |
| Msa1162180 | Msa1261050 | 0.826232 | 3.036630e-54 | -8.615850e-47 |
| Msa1162180 | Msa1263740 | 0.804712 | 1.893796e-49 | -8.615850e-47 |
| Msa1162180 | Msa1263780 | 0.834560 | 2.792433e-56 | -8.615850e-47 |
| Msa1162180 | Msa1294460 | 0.829212 | 5.840557e-55 | -8.615850e-47 |
| Msa1162180 | Msa1300460 | 0.843700 | 1.192833e-58 | -8.615850e-47 |
| Msa1162180 | Msa1305780 | 0.807952 | 3.930452e-50 | -8.615850e-47 |
| Msa1162180 | Msa1306790 | 0.811501 | 6.784914e-51 | -8.615850e-47 |
| Msa1162180 | Msa1332950 | 0.828982 | 6.639120e-55 | -8.615850e-47 |
| Msa1162180 | Msa1338210 | 0.812144 | 4.914746e-51 | -8.615850e-47 |
| Msa1162180 | Msa1339170 | 0.815109 | 1.093997e-51 | -8.615850e-47 |
| Msa1162180 | Msa1343170 | 0.836441 | 9.339692e-57 | -8.615850e-47 |
| Msa1162180 | Msa1343180 | 0.821913 | 3.135219e-53 | -8.615850e-47 |
| Msa1162180 | Msa1364410 | 0.819485 | 1.133117e-52 | -8.615850e-47 |
| Msa1162180 | Msa1368750 | 0.834728 | 2.533552e-56 | -8.615850e-47 |
| Msa1162180 | Msa1374790 | 0.836601 | 8.504939e-57 | -8.615850e-47 |
| Msa1162180 | Msa1380120 | 0.820790 | 5.694671e-53 | -8.615850e-47 |
| Msa1162180 | Msa1381470 | 0.810976 | 8.817832e-51 | -8.615850e-47 |
| Msa1162180 | Msa1384150 | 0.824335 | 8.536446e-54 | -8.615850e-47 |
| Msa1162180 | Msa1387440 | 0.819113 | 1.377291e-52 | -8.615850e-47 |
| Msa1162180 | Msa1409410 | 0.821066 | 4.919096e-53 | -8.615850e-47 |
| Msa1162180 | Msa1440630 | 0.822315 | 2.529314e-53 | -8.615850e-47 |
| Msa1162180 | Msa1442260 | 0.803202 | 3.901210e-49 | -8.615850e-47 |
| Msa1162180 | Msa1450190 | 0.842222 | 2.949921e-58 | -8.615850e-47 |
| Msa1162180 | Msa1451820 | 0.839484 | 1.541558e-57 | -8.615850e-47 |
| Msa0520870 | Msa1162180 | 0.840447 | 8.646848e-58 | -8.615850e-47 |
| Msa0521680 | Msa1162180 | 0.819066 | 1.411514e-52 | -8.615850e-47 |
| Msa0524520 | Msa1162180 | 0.823912 | 1.072711e-53 | -8.615850e-47 |
| Msa0531960 | Msa1162180 | 0.824562 | 7.546797e-54 | -8.615850e-47 |
| Msa0534100 | Msa1162180 | 0.811854 | 5.684602e-51 | -8.615850e-47 |
| Msa0559100 | Msa1162180 | 0.806196 | 9.250256e-50 | -8.615850e-47 |
| Msa0561560 | Msa1162180 | 0.800150 | 1.649682e-48 | -8.615850e-47 |
| Msa0563740 | Msa1162180 | 0.843671 | 1.213668e-58 | -8.615850e-47 |
| Msa0563980 | Msa1162180 | 0.812635 | 3.839692e-51 | -8.615850e-47 |
| Msa0577280 | Msa1162180 | 0.804227 | 2.390051e-49 | -8.615850e-47 |
| Msa0577330 | Msa1162180 | 0.806359 | 8.546560e-50 | -8.615850e-47 |
| Msa0577450 | Msa1162180 | 0.810649 | 1.037964e-50 | -8.615850e-47 |
| Msa0577820 | Msa1162180 | 0.800395 | 1.470409e-48 | -8.615850e-47 |
| Msa0580810 | Msa1162180 | 0.800231 | 1.587839e-48 | -8.615850e-47 |
| Msa0588920 | Msa1162180 | 0.822451 | 2.352505e-53 | -8.615850e-47 |
| Msa0590200 | Msa1162180 | 0.823170 | 1.600113e-53 | -8.615850e-47 |
| Msa0843050 | Msa1162180 | 0.824411 | 8.192608e-54 | -8.615850e-47 |
| Msa0855230 | Msa1162180 | 0.821377 | 4.171086e-53 | -8.615850e-47 |
| Msa0857800 | Msa1162180 | 0.812898 | 3.362027e-51 | -8.615850e-47 |
| Msa0857890 | Msa1162180 | 0.815954 | 7.093852e-52 | -8.615850e-47 |
| Msa0863620 | Msa1162180 | 0.818323 | 2.081580e-52 | -8.615850e-47 |
| Msa0867110 | Msa1162180 | 0.801513 | 8.691815e-49 | -8.615850e-47 |
| Msa0909760 | Msa1162180 | 0.820202 | 7.770426e-53 | -8.615850e-47 |
| Msa0924430 | Msa1162180 | 0.806135 | 9.528441e-50 | -8.615850e-47 |
| Msa0931590 | Msa1162180 | 0.845052 | 5.163514e-59 | -8.615850e-47 |
| Msa0966320 | Msa1162180 | 0.826350 | 2.847102e-54 | -8.615850e-47 |
| Msa0966480 | Msa1162180 | 0.822143 | 2.773420e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162180 | MtrunA17_Chr7g0257991 | 93.254 | 252 | 14 | 2 | 1 | 250 | 1 | 251 | 1.02e-162 | 450 |
| Msa1162180 | MtrunA17_Chr3g0088311 | 36.019 | 211 | 110 | 5 | 1 | 207 | 1 | 190 | 4.30e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162180 | AT3G52110.4 | 35.433 | 254 | 116 | 12 | 1 | 246 | 1 | 214 | 1.93e-29 | 112 |
| Msa1162180 | AT3G52110.3 | 35.433 | 254 | 116 | 12 | 1 | 246 | 1 | 214 | 5.75e-29 | 112 |
| Msa1162180 | AT3G52110.2 | 35.433 | 254 | 116 | 12 | 1 | 246 | 1 | 214 | 7.37e-29 | 112 |
| Msa1162180 | AT3G52110.1 | 35.433 | 254 | 116 | 12 | 1 | 246 | 1 | 214 | 1.37e-28 | 111 |
Find 77 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAATTCTTCCATTTA+AGG | 0.041761 | 7_4:-52688748 | Msa1162180:CDS |
| GATCTTCTATTACTTCTTTC+AGG | 0.129146 | 7_4:+52688170 | None:intergenic |
| AAACTTTACTGTAACAAATT+TGG | 0.131238 | 7_4:-52688291 | Msa1162180:CDS |
| CTTGAACAATTGGGTCTTCT+AGG | 0.208167 | 7_4:+52688347 | None:intergenic |
| AAGTGAGAGAAGGTGTTAAA+TGG | 0.210894 | 7_4:-52687691 | Msa1162180:three_prime_UTR |
| CTTCGATTTCTATCCTTAAA+TGG | 0.242020 | 7_4:+52688735 | None:intergenic |
| TGATTCCGTTAAAGTGAATT+TGG | 0.250039 | 7_4:-52687812 | Msa1162180:three_prime_UTR |
| AAATGAGCATTGTCGAAGTT+TGG | 0.260206 | 7_4:-52687636 | None:intergenic |
| ATCCATGTTTCTTGAACAAT+TGG | 0.261018 | 7_4:+52688337 | None:intergenic |
| TTAAAGTGAATTTGGTTAAC+AGG | 0.271543 | 7_4:-52687804 | Msa1162180:three_prime_UTR |
| GTTAACCAAATTCACTTTAA+CGG | 0.305486 | 7_4:+52687807 | None:intergenic |
| AGTTCTGGTCTAGAACAATT+TGG | 0.318801 | 7_4:-52687730 | Msa1162180:three_prime_UTR |
| GGAAAATCCTTCAGCTGTTA+AGG | 0.334128 | 7_4:-52688381 | Msa1162180:CDS |
| AAATTTGTTACAGTAAAGTT+TGG | 0.339133 | 7_4:+52688293 | None:intergenic |
| TTGTTGATGATGATGAAATC+TGG | 0.344812 | 7_4:-52689076 | Msa1162180:CDS |
| GCAGGCAAAGTTATTAAGAT+TGG | 0.355508 | 7_4:-52688778 | Msa1162180:intron |
| AGAATTGAAGGAAAAGAGTA+AGG | 0.363655 | 7_4:-52687982 | Msa1162180:CDS |
| AATGAGCATTGTCGAAGTTT+GGG | 0.382777 | 7_4:-52687635 | None:intergenic |
| CAACGGCTTCTTTAGGTTGT+TGG | 0.382877 | 7_4:+52688259 | None:intergenic |
| ACCTCAACAACGGCTTCTTT+AGG | 0.384314 | 7_4:+52688252 | None:intergenic |
| CTCAAAATTTATTGGGTGGC+AGG | 0.386361 | 7_4:-52688124 | Msa1162180:CDS |
| TGAGGTAGTAACCTTGGAAT+TGG | 0.388500 | 7_4:+52688905 | None:intergenic |
| AGCAGAGAGATCAACCCATT+TGG | 0.390275 | 7_4:+52689115 | None:intergenic |
| TGGAACCAGAAAACATTGAT+TGG | 0.393800 | 7_4:-52689193 | Msa1162180:CDS |
| AGTGAGAGAAGGTGTTAAAT+GGG | 0.404238 | 7_4:-52687690 | Msa1162180:three_prime_UTR |
| TTGGTCGTGGTTGTAGTTGT+GGG | 0.420054 | 7_4:+52688924 | None:intergenic |
| ATCATCAACAAGAGGCTCAT+TGG | 0.420743 | 7_4:+52689088 | None:intergenic |
| GCAGAGAGATCAACCCATTT+GGG | 0.436277 | 7_4:+52689116 | None:intergenic |
| AGAACTTCGACGCGCCCAAA+TGG | 0.439641 | 7_4:-52689130 | Msa1162180:CDS |
| AGTTGCATATAAGAGAGTTC+TGG | 0.450555 | 7_4:-52687745 | Msa1162180:three_prime_UTR |
| GAGAAGGGCTCAAATTCAAA+TGG | 0.468513 | 7_4:-52688014 | Msa1162180:CDS |
| ATTGGTCGTGGTTGTAGTTG+TGG | 0.472270 | 7_4:+52688923 | None:intergenic |
| CTGTAACAAATTTGGATGGT+GGG | 0.481657 | 7_4:-52688283 | Msa1162180:CDS |
| TGGAAGAATTTCAGAAAAGC+TGG | 0.482092 | 7_4:+52688755 | None:intergenic |
| TGGAGTGTTAGAAGAATTGA+AGG | 0.486427 | 7_4:-52687994 | Msa1162180:CDS |
| CCCTTGCTTGTTGTCAAGGA+AGG | 0.489257 | 7_4:-52687942 | Msa1162180:CDS |
| TCCATGTTTCTTGAACAATT+GGG | 0.492758 | 7_4:+52688338 | None:intergenic |
| GGTACCCTTGCTTGTTGTCA+AGG | 0.495287 | 7_4:-52687946 | Msa1162180:CDS |
| TTACAACAAATTCGACCGTT+GGG | 0.495332 | 7_4:+52689446 | None:intergenic |
| GGTCTAGAACAATTTGGACT+AGG | 0.498845 | 7_4:-52687724 | Msa1162180:three_prime_UTR |
| AGGAAGGGTTCTACTAAGAA+AGG | 0.503091 | 7_4:-52688047 | Msa1162180:CDS |
| GAACTTCGACGCGCCCAAAT+GGG | 0.504380 | 7_4:-52689129 | Msa1162180:CDS |
| TCACAATCCTTAACAGCTGA+AGG | 0.510472 | 7_4:+52688374 | None:intergenic |
| AGAGTAAGGGACGCAAAGAA+AGG | 0.522658 | 7_4:-52687968 | Msa1162180:CDS |
| GAAATTCTGAGTCAAATCAC+AGG | 0.527180 | 7_4:-52688101 | Msa1162180:CDS |
| TTTACAACAAATTCGACCGT+TGG | 0.530067 | 7_4:+52689445 | None:intergenic |
| GGAACCAGAAAACATTGATT+GGG | 0.532486 | 7_4:-52689192 | Msa1162180:CDS |
| TCAAAATTTATTGGGTGGCA+GGG | 0.533924 | 7_4:-52688123 | Msa1162180:CDS |
| TTTACTGTAACAAATTTGGA+TGG | 0.540080 | 7_4:-52688287 | Msa1162180:CDS |
| ACTGTAACAAATTTGGATGG+TGG | 0.552283 | 7_4:-52688284 | Msa1162180:CDS |
| AAATAATGTCTCATTACTCA+AGG | 0.553989 | 7_4:+52687915 | None:intergenic |
| GAGTAAGGGACGCAAAGAAA+GGG | 0.559077 | 7_4:-52687967 | Msa1162180:CDS |
| AGTAACCTTGGAATTGGTCG+TGG | 0.559793 | 7_4:+52688911 | None:intergenic |
| GAATTGAAGGAAAAGAGTAA+GGG | 0.560426 | 7_4:-52687981 | Msa1162180:CDS |
| CCCTTCCTTGACAACAAGCA+AGG | 0.563680 | 7_4:+52687941 | None:intergenic |
| GTAAGTATCATCATGAATGA+AGG | 0.565055 | 7_4:+52689154 | None:intergenic |
| ACCCAATTGTTCAAGAAACA+TGG | 0.569834 | 7_4:-52688339 | Msa1162180:CDS |
| ATCAACAAGAGGCTCATTGG+AGG | 0.575042 | 7_4:+52689091 | None:intergenic |
| CCTTGCTTGTTGTCAAGGAA+GGG | 0.590167 | 7_4:-52687941 | Msa1162180:CDS |
| GAAGAGGCTAGCAACAAGGA+AGG | 0.590240 | 7_4:-52688063 | Msa1162180:CDS |
| TACAACCACGACCAATTCCA+AGG | 0.592894 | 7_4:-52688916 | Msa1162180:intron |
| AGGGTTCTACTAAGAAAGGA+GGG | 0.601335 | 7_4:-52688043 | Msa1162180:CDS |
| GGGTTCTACTAAGAAAGGAG+GGG | 0.602916 | 7_4:-52688042 | Msa1162180:CDS |
| AGTATCATCATGAATGAAGG+TGG | 0.603485 | 7_4:+52689157 | None:intergenic |
| TCAGCTCAAAATTTATTGGG+TGG | 0.604858 | 7_4:-52688128 | Msa1162180:CDS |
| GGTTCTACTAAGAAAGGAGG+GGG | 0.607034 | 7_4:-52688041 | Msa1162180:CDS |
| CTTCTATTACTTCTTTCAGG+AGG | 0.613198 | 7_4:+52688173 | None:intergenic |
| AAGAGGCTAGCAACAAGGAA+GGG | 0.620914 | 7_4:-52688062 | Msa1162180:CDS |
| ATTTCATCATCATCAACAAG+AGG | 0.621768 | 7_4:+52689080 | None:intergenic |
| AATTGAAGAGGCTAGCAACA+AGG | 0.623685 | 7_4:-52688067 | Msa1162180:CDS |
| ACCTAAAGAAGCCGTTGTTG+AGG | 0.627199 | 7_4:-52688253 | Msa1162180:CDS |
| TTTGACTTTGACCTCAACAA+CGG | 0.631431 | 7_4:+52688242 | None:intergenic |
| CCTTCCTTGACAACAAGCAA+GGG | 0.639988 | 7_4:+52687942 | None:intergenic |
| AAGGGTTCTACTAAGAAAGG+AGG | 0.646202 | 7_4:-52688044 | Msa1162180:CDS |
| CATTTAAGGATAGAAATCGA+AGG | 0.656115 | 7_4:-52688734 | Msa1162180:intron |
| AAATTCTGAGTCAAATCACA+GGG | 0.661167 | 7_4:-52688100 | Msa1162180:CDS |
| GTTCTACTAAGAAAGGAGGG+GGG | 0.794134 | 7_4:-52688040 | Msa1162180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGCATAATTTTTAGTTTT+TGG | + | chr7_4:52688250-52688269 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATAGATTTGATT+TGG | + | chr7_4:52688375-52688394 | None:intergenic | 15.0% |
| !! | TATTATGTTGTATATGTATT+AGG | - | chr7_4:52688678-52688697 | Msa1162180:intron | 15.0% |
| !! | ATTATGTTGTATATGTATTA+GGG | - | chr7_4:52688679-52688698 | Msa1162180:intron | 15.0% |
| !!! | TTTATTTTTTTGACAAGAAA+CGG | - | chr7_4:52689220-52689239 | Msa1162180:intron | 15.0% |
| !!! | ATTGCATAATTTTTAGTTTT+TGG | + | chr7_4:52688250-52688269 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATAGATTTGATT+TGG | + | chr7_4:52688375-52688394 | None:intergenic | 15.0% |
| !! | TATTATGTTGTATATGTATT+AGG | - | chr7_4:52688678-52688697 | Msa1162180:intron | 15.0% |
| !! | ATTATGTTGTATATGTATTA+GGG | - | chr7_4:52688679-52688698 | Msa1162180:intron | 15.0% |
| !!! | TTTATTTTTTTGACAAGAAA+CGG | - | chr7_4:52689220-52689239 | Msa1162180:intron | 15.0% |
| !! | TTCTGTTAATGTAATGATAA+TGG | + | chr7_4:52687803-52687822 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTAACTTTTCAGA+TGG | - | chr7_4:52687868-52687887 | Msa1162180:three_prime_UTR | 20.0% |
| !! | TGAGAAAAAAACAAAAATTG+AGG | + | chr7_4:52688197-52688216 | None:intergenic | 20.0% |
| !!! | TAAAAAGAGTAAAGCTATTT+TGG | - | chr7_4:52688387-52688406 | Msa1162180:intron | 20.0% |
| !!! | TATCTTTGAATGTGTTATTA+TGG | - | chr7_4:52688467-52688486 | Msa1162180:intron | 20.0% |
| !!! | GTATCATGTTAGTAATTTTA+TGG | + | chr7_4:52688526-52688545 | None:intergenic | 20.0% |
| !!! | TCTTAGCTTTAGTTTTTTAA+GGG | + | chr7_4:52688633-52688652 | None:intergenic | 20.0% |
| !!! | TTCTTAGCTTTAGTTTTTTA+AGG | + | chr7_4:52688634-52688653 | None:intergenic | 20.0% |
| !!! | AAATTTGTTACAGTAAAGTT+TGG | + | chr7_4:52688791-52688810 | None:intergenic | 20.0% |
| !! | AAACTTTACTGTAACAAATT+TGG | - | chr7_4:52688790-52688809 | Msa1162180:intron | 20.0% |
| !!! | ATTTTCAGCTCAAAATTTAT+TGG | - | chr7_4:52688949-52688968 | Msa1162180:CDS | 20.0% |
| !!! | TTTTCAGCTCAAAATTTATT+GGG | - | chr7_4:52688950-52688969 | Msa1162180:CDS | 20.0% |
| !! | TTCTGTTAATGTAATGATAA+TGG | + | chr7_4:52687803-52687822 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTAACTTTTCAGA+TGG | - | chr7_4:52687868-52687887 | Msa1162180:three_prime_UTR | 20.0% |
| !! | TGAGAAAAAAACAAAAATTG+AGG | + | chr7_4:52688197-52688216 | None:intergenic | 20.0% |
| !!! | TAAAAAGAGTAAAGCTATTT+TGG | - | chr7_4:52688387-52688406 | Msa1162180:intron | 20.0% |
| !!! | TATCTTTGAATGTGTTATTA+TGG | - | chr7_4:52688467-52688486 | Msa1162180:intron | 20.0% |
| !!! | GTATCATGTTAGTAATTTTA+TGG | + | chr7_4:52688526-52688545 | None:intergenic | 20.0% |
| !!! | TCTTAGCTTTAGTTTTTTAA+GGG | + | chr7_4:52688633-52688652 | None:intergenic | 20.0% |
| !!! | TTCTTAGCTTTAGTTTTTTA+AGG | + | chr7_4:52688634-52688653 | None:intergenic | 20.0% |
| !!! | AAATTTGTTACAGTAAAGTT+TGG | + | chr7_4:52688791-52688810 | None:intergenic | 20.0% |
| !! | AAACTTTACTGTAACAAATT+TGG | - | chr7_4:52688790-52688809 | Msa1162180:intron | 20.0% |
| !!! | ATTTTCAGCTCAAAATTTAT+TGG | - | chr7_4:52688949-52688968 | Msa1162180:CDS | 20.0% |
| !!! | TTTTCAGCTCAAAATTTATT+GGG | - | chr7_4:52688950-52688969 | Msa1162180:CDS | 20.0% |
| ! | CTGAAAAGTTAAAAAAAGAG+AGG | + | chr7_4:52687867-52687886 | None:intergenic | 25.0% |
| !!! | AGAAGATTTTGAGAAATCTT+GGG | + | chr7_4:52688133-52688152 | None:intergenic | 25.0% |
| !!! | AAGAAGATTTTGAGAAATCT+TGG | + | chr7_4:52688134-52688153 | None:intergenic | 25.0% |
| !!! | ATTATCTTCATTTTTCTTGC+AGG | - | chr7_4:52688285-52688304 | Msa1162180:CDS | 25.0% |
| !!! | TTCTGAAATTCTTCCATTTA+AGG | - | chr7_4:52688333-52688352 | Msa1162180:CDS | 25.0% |
| ! | AAAAAGCGATAATACATTGA+AGG | + | chr7_4:52688414-52688433 | None:intergenic | 25.0% |
| ! | TACTAACATGATACATTCAA+AGG | - | chr7_4:52688532-52688551 | Msa1162180:intron | 25.0% |
| ! | TTTACTGTAACAAATTTGGA+TGG | - | chr7_4:52688794-52688813 | Msa1162180:intron | 25.0% |
| ! | AAATAATGTCTCATTACTCA+AGG | + | chr7_4:52689169-52689188 | None:intergenic | 25.0% |
| ! | GTTAACCAAATTCACTTTAA+CGG | + | chr7_4:52689277-52689296 | None:intergenic | 25.0% |
| ! | TTAAAGTGAATTTGGTTAAC+AGG | - | chr7_4:52689277-52689296 | Msa1162180:intron | 25.0% |
| !!! | TTTTTCTTTTAAGTGAGAGA+AGG | - | chr7_4:52689380-52689399 | Msa1162180:intron | 25.0% |
| ! | CTGAAAAGTTAAAAAAAGAG+AGG | + | chr7_4:52687867-52687886 | None:intergenic | 25.0% |
| !!! | AGAAGATTTTGAGAAATCTT+GGG | + | chr7_4:52688133-52688152 | None:intergenic | 25.0% |
| !!! | AAGAAGATTTTGAGAAATCT+TGG | + | chr7_4:52688134-52688153 | None:intergenic | 25.0% |
| !!! | ATTATCTTCATTTTTCTTGC+AGG | - | chr7_4:52688285-52688304 | Msa1162180:CDS | 25.0% |
| !!! | TTCTGAAATTCTTCCATTTA+AGG | - | chr7_4:52688333-52688352 | Msa1162180:CDS | 25.0% |
| ! | AAAAAGCGATAATACATTGA+AGG | + | chr7_4:52688414-52688433 | None:intergenic | 25.0% |
| ! | TACTAACATGATACATTCAA+AGG | - | chr7_4:52688532-52688551 | Msa1162180:intron | 25.0% |
| ! | TTTACTGTAACAAATTTGGA+TGG | - | chr7_4:52688794-52688813 | Msa1162180:intron | 25.0% |
| ! | AAATAATGTCTCATTACTCA+AGG | + | chr7_4:52689169-52689188 | None:intergenic | 25.0% |
| ! | GTTAACCAAATTCACTTTAA+CGG | + | chr7_4:52689277-52689296 | None:intergenic | 25.0% |
| ! | TTAAAGTGAATTTGGTTAAC+AGG | - | chr7_4:52689277-52689296 | Msa1162180:intron | 25.0% |
| !!! | TTTTTCTTTTAAGTGAGAGA+AGG | - | chr7_4:52689380-52689399 | Msa1162180:intron | 25.0% |
| ACAAATGAAGTTGTATTGTG+TGG | + | chr7_4:52687730-52687749 | None:intergenic | 30.0% | |
| GTAAGTATCATCATGAATGA+AGG | + | chr7_4:52687930-52687949 | None:intergenic | 30.0% | |
| ATTTCATCATCATCAACAAG+AGG | + | chr7_4:52688004-52688023 | None:intergenic | 30.0% | |
| !! | TTGTTGATGATGATGAAATC+TGG | - | chr7_4:52688005-52688024 | Msa1162180:CDS | 30.0% |
| !! | TTCTAGCTCAATTTCTTTGA+TGG | - | chr7_4:52688061-52688080 | Msa1162180:CDS | 30.0% |
| AAAAATTGAGGTAGTAACCT+TGG | + | chr7_4:52688185-52688204 | None:intergenic | 30.0% | |
| CTTCGATTTCTATCCTTAAA+TGG | + | chr7_4:52688349-52688368 | None:intergenic | 30.0% | |
| CATTTAAGGATAGAAATCGA+AGG | - | chr7_4:52688347-52688366 | Msa1162180:CDS | 30.0% | |
| TCCATGTTTCTTGAACAATT+GGG | + | chr7_4:52688746-52688765 | None:intergenic | 30.0% | |
| ATCCATGTTTCTTGAACAAT+TGG | + | chr7_4:52688747-52688766 | None:intergenic | 30.0% | |
| GATCTTCTATTACTTCTTTC+AGG | + | chr7_4:52688914-52688933 | None:intergenic | 30.0% | |
| AAATTCTGAGTCAAATCACA+GGG | - | chr7_4:52688981-52689000 | Msa1162180:intron | 30.0% | |
| AGAATTGAAGGAAAAGAGTA+AGG | - | chr7_4:52689099-52689118 | Msa1162180:CDS | 30.0% | |
| GAATTGAAGGAAAAGAGTAA+GGG | - | chr7_4:52689100-52689119 | Msa1162180:CDS | 30.0% | |
| TGATTCCGTTAAAGTGAATT+TGG | - | chr7_4:52689269-52689288 | Msa1162180:intron | 30.0% | |
| ACAAATGAAGTTGTATTGTG+TGG | + | chr7_4:52687730-52687749 | None:intergenic | 30.0% | |
| GTAAGTATCATCATGAATGA+AGG | + | chr7_4:52687930-52687949 | None:intergenic | 30.0% | |
| ATTTCATCATCATCAACAAG+AGG | + | chr7_4:52688004-52688023 | None:intergenic | 30.0% | |
| !! | TTGTTGATGATGATGAAATC+TGG | - | chr7_4:52688005-52688024 | Msa1162180:CDS | 30.0% |
| !! | TTCTAGCTCAATTTCTTTGA+TGG | - | chr7_4:52688061-52688080 | Msa1162180:CDS | 30.0% |
| AAAAATTGAGGTAGTAACCT+TGG | + | chr7_4:52688185-52688204 | None:intergenic | 30.0% | |
| CTTCGATTTCTATCCTTAAA+TGG | + | chr7_4:52688349-52688368 | None:intergenic | 30.0% | |
| CATTTAAGGATAGAAATCGA+AGG | - | chr7_4:52688347-52688366 | Msa1162180:CDS | 30.0% | |
| TCCATGTTTCTTGAACAATT+GGG | + | chr7_4:52688746-52688765 | None:intergenic | 30.0% | |
| ATCCATGTTTCTTGAACAAT+TGG | + | chr7_4:52688747-52688766 | None:intergenic | 30.0% | |
| GATCTTCTATTACTTCTTTC+AGG | + | chr7_4:52688914-52688933 | None:intergenic | 30.0% | |
| AAATTCTGAGTCAAATCACA+GGG | - | chr7_4:52688981-52689000 | Msa1162180:intron | 30.0% | |
| AGAATTGAAGGAAAAGAGTA+AGG | - | chr7_4:52689099-52689118 | Msa1162180:CDS | 30.0% | |
| GAATTGAAGGAAAAGAGTAA+GGG | - | chr7_4:52689100-52689119 | Msa1162180:CDS | 30.0% | |
| TGATTCCGTTAAAGTGAATT+TGG | - | chr7_4:52689269-52689288 | Msa1162180:intron | 30.0% | |
| CTCAAAAAACAACACCTCTT+TGG | - | chr7_4:52687768-52687787 | Msa1162180:three_prime_UTR | 35.0% | |
| TGGAACCAGAAAACATTGAT+TGG | - | chr7_4:52687888-52687907 | Msa1162180:three_prime_UTR | 35.0% | |
| ! | GGAACCAGAAAACATTGATT+GGG | - | chr7_4:52687889-52687908 | Msa1162180:three_prime_UTR | 35.0% |
| ! | TTGTCCCAATCAATGTTTTC+TGG | + | chr7_4:52687896-52687915 | None:intergenic | 35.0% |
| AGTATCATCATGAATGAAGG+TGG | + | chr7_4:52687927-52687946 | None:intergenic | 35.0% | |
| GCAGGCAAAGTTATTAAGAT+TGG | - | chr7_4:52688303-52688322 | Msa1162180:CDS | 35.0% | |
| TGGAAGAATTTCAGAAAAGC+TGG | + | chr7_4:52688329-52688348 | None:intergenic | 35.0% | |
| ACCCAATTGTTCAAGAAACA+TGG | - | chr7_4:52688742-52688761 | Msa1162180:CDS | 35.0% | |
| ACTGTAACAAATTTGGATGG+TGG | - | chr7_4:52688797-52688816 | Msa1162180:intron | 35.0% | |
| CTGTAACAAATTTGGATGGT+GGG | - | chr7_4:52688798-52688817 | Msa1162180:intron | 35.0% | |
| ! | TTTGACTTTGACCTCAACAA+CGG | + | chr7_4:52688842-52688861 | None:intergenic | 35.0% |
| CTTCTATTACTTCTTTCAGG+AGG | + | chr7_4:52688911-52688930 | None:intergenic | 35.0% | |
| TCAGCTCAAAATTTATTGGG+TGG | - | chr7_4:52688953-52688972 | Msa1162180:CDS | 35.0% | |
| TCAAAATTTATTGGGTGGCA+GGG | - | chr7_4:52688958-52688977 | Msa1162180:CDS | 35.0% | |
| GAAATTCTGAGTCAAATCAC+AGG | - | chr7_4:52688980-52688999 | Msa1162180:intron | 35.0% | |
| ! | TGGAGTGTTAGAAGAATTGA+AGG | - | chr7_4:52689087-52689106 | Msa1162180:CDS | 35.0% |
| AGTTGCATATAAGAGAGTTC+TGG | - | chr7_4:52689336-52689355 | Msa1162180:intron | 35.0% | |
| ! | AGTTCTGGTCTAGAACAATT+TGG | - | chr7_4:52689351-52689370 | Msa1162180:intron | 35.0% |
| !! | AAGTGAGAGAAGGTGTTAAA+TGG | - | chr7_4:52689390-52689409 | Msa1162180:intron | 35.0% |
| !! | AGTGAGAGAAGGTGTTAAAT+GGG | - | chr7_4:52689391-52689410 | Msa1162180:intron | 35.0% |
| CTCAAAAAACAACACCTCTT+TGG | - | chr7_4:52687768-52687787 | Msa1162180:three_prime_UTR | 35.0% | |
| TGGAACCAGAAAACATTGAT+TGG | - | chr7_4:52687888-52687907 | Msa1162180:three_prime_UTR | 35.0% | |
| ! | GGAACCAGAAAACATTGATT+GGG | - | chr7_4:52687889-52687908 | Msa1162180:three_prime_UTR | 35.0% |
| ! | TTGTCCCAATCAATGTTTTC+TGG | + | chr7_4:52687896-52687915 | None:intergenic | 35.0% |
| AGTATCATCATGAATGAAGG+TGG | + | chr7_4:52687927-52687946 | None:intergenic | 35.0% | |
| GCAGGCAAAGTTATTAAGAT+TGG | - | chr7_4:52688303-52688322 | Msa1162180:CDS | 35.0% | |
| TGGAAGAATTTCAGAAAAGC+TGG | + | chr7_4:52688329-52688348 | None:intergenic | 35.0% | |
| ACCCAATTGTTCAAGAAACA+TGG | - | chr7_4:52688742-52688761 | Msa1162180:CDS | 35.0% | |
| ACTGTAACAAATTTGGATGG+TGG | - | chr7_4:52688797-52688816 | Msa1162180:intron | 35.0% | |
| CTGTAACAAATTTGGATGGT+GGG | - | chr7_4:52688798-52688817 | Msa1162180:intron | 35.0% | |
| ! | TTTGACTTTGACCTCAACAA+CGG | + | chr7_4:52688842-52688861 | None:intergenic | 35.0% |
| CTTCTATTACTTCTTTCAGG+AGG | + | chr7_4:52688911-52688930 | None:intergenic | 35.0% | |
| TCAGCTCAAAATTTATTGGG+TGG | - | chr7_4:52688953-52688972 | Msa1162180:CDS | 35.0% | |
| TCAAAATTTATTGGGTGGCA+GGG | - | chr7_4:52688958-52688977 | Msa1162180:CDS | 35.0% | |
| GAAATTCTGAGTCAAATCAC+AGG | - | chr7_4:52688980-52688999 | Msa1162180:intron | 35.0% | |
| ! | TGGAGTGTTAGAAGAATTGA+AGG | - | chr7_4:52689087-52689106 | Msa1162180:CDS | 35.0% |
| AGTTGCATATAAGAGAGTTC+TGG | - | chr7_4:52689336-52689355 | Msa1162180:intron | 35.0% | |
| ! | AGTTCTGGTCTAGAACAATT+TGG | - | chr7_4:52689351-52689370 | Msa1162180:intron | 35.0% |
| !! | AAGTGAGAGAAGGTGTTAAA+TGG | - | chr7_4:52689390-52689409 | Msa1162180:intron | 35.0% |
| !! | AGTGAGAGAAGGTGTTAAAT+GGG | - | chr7_4:52689391-52689410 | Msa1162180:intron | 35.0% |
| AATGGTTGAAACAGCCAAAG+AGG | + | chr7_4:52687785-52687804 | None:intergenic | 40.0% | |
| ATCATCAACAAGAGGCTCAT+TGG | + | chr7_4:52687996-52688015 | None:intergenic | 40.0% | |
| !!! | GAAATCTGGTTTTGCACTCA+AGG | - | chr7_4:52688019-52688038 | Msa1162180:CDS | 40.0% |
| TGAGGTAGTAACCTTGGAAT+TGG | + | chr7_4:52688179-52688198 | None:intergenic | 40.0% | |
| ! | GGATTAAACTGACTCACAGA+AGG | + | chr7_4:52688505-52688524 | None:intergenic | 40.0% |
| TCGTTCCTAAATGTGTGACA+CGG | + | chr7_4:52688595-52688614 | None:intergenic | 40.0% | |
| GGAAAATCCTTCAGCTGTTA+AGG | - | chr7_4:52688700-52688719 | Msa1162180:intron | 40.0% | |
| TCACAATCCTTAACAGCTGA+AGG | + | chr7_4:52688710-52688729 | None:intergenic | 40.0% | |
| CTTGAACAATTGGGTCTTCT+AGG | + | chr7_4:52688737-52688756 | None:intergenic | 40.0% | |
| CTCAAAATTTATTGGGTGGC+AGG | - | chr7_4:52688957-52688976 | Msa1162180:CDS | 40.0% | |
| !! | GGTTTTGCTCTGAATTGAAG+AGG | - | chr7_4:52689002-52689021 | Msa1162180:intron | 40.0% |
| AATTGAAGAGGCTAGCAACA+AGG | - | chr7_4:52689014-52689033 | Msa1162180:intron | 40.0% | |
| AGGAAGGGTTCTACTAAGAA+AGG | - | chr7_4:52689034-52689053 | Msa1162180:intron | 40.0% | |
| AAGGGTTCTACTAAGAAAGG+AGG | - | chr7_4:52689037-52689056 | Msa1162180:intron | 40.0% | |
| AGGGTTCTACTAAGAAAGGA+GGG | - | chr7_4:52689038-52689057 | Msa1162180:intron | 40.0% | |
| GAGAAGGGCTCAAATTCAAA+TGG | - | chr7_4:52689067-52689086 | Msa1162180:CDS | 40.0% | |
| ! | GGTCTAGAACAATTTGGACT+AGG | - | chr7_4:52689357-52689376 | Msa1162180:intron | 40.0% |
| AATGGTTGAAACAGCCAAAG+AGG | + | chr7_4:52687785-52687804 | None:intergenic | 40.0% | |
| ATCATCAACAAGAGGCTCAT+TGG | + | chr7_4:52687996-52688015 | None:intergenic | 40.0% | |
| !!! | GAAATCTGGTTTTGCACTCA+AGG | - | chr7_4:52688019-52688038 | Msa1162180:CDS | 40.0% |
| TGAGGTAGTAACCTTGGAAT+TGG | + | chr7_4:52688179-52688198 | None:intergenic | 40.0% | |
| ! | GGATTAAACTGACTCACAGA+AGG | + | chr7_4:52688505-52688524 | None:intergenic | 40.0% |
| TCGTTCCTAAATGTGTGACA+CGG | + | chr7_4:52688595-52688614 | None:intergenic | 40.0% | |
| GGAAAATCCTTCAGCTGTTA+AGG | - | chr7_4:52688700-52688719 | Msa1162180:intron | 40.0% | |
| TCACAATCCTTAACAGCTGA+AGG | + | chr7_4:52688710-52688729 | None:intergenic | 40.0% | |
| CTTGAACAATTGGGTCTTCT+AGG | + | chr7_4:52688737-52688756 | None:intergenic | 40.0% | |
| CTCAAAATTTATTGGGTGGC+AGG | - | chr7_4:52688957-52688976 | Msa1162180:CDS | 40.0% | |
| !! | GGTTTTGCTCTGAATTGAAG+AGG | - | chr7_4:52689002-52689021 | Msa1162180:intron | 40.0% |
| AATTGAAGAGGCTAGCAACA+AGG | - | chr7_4:52689014-52689033 | Msa1162180:intron | 40.0% | |
| AGGAAGGGTTCTACTAAGAA+AGG | - | chr7_4:52689034-52689053 | Msa1162180:intron | 40.0% | |
| AAGGGTTCTACTAAGAAAGG+AGG | - | chr7_4:52689037-52689056 | Msa1162180:intron | 40.0% | |
| AGGGTTCTACTAAGAAAGGA+GGG | - | chr7_4:52689038-52689057 | Msa1162180:intron | 40.0% | |
| GAGAAGGGCTCAAATTCAAA+TGG | - | chr7_4:52689067-52689086 | Msa1162180:CDS | 40.0% | |
| ! | GGTCTAGAACAATTTGGACT+AGG | - | chr7_4:52689357-52689376 | Msa1162180:intron | 40.0% |
| GCAGAGAGATCAACCCATTT+GGG | + | chr7_4:52687968-52687987 | None:intergenic | 45.0% | |
| AGCAGAGAGATCAACCCATT+TGG | + | chr7_4:52687969-52687988 | None:intergenic | 45.0% | |
| ATCAACAAGAGGCTCATTGG+AGG | + | chr7_4:52687993-52688012 | None:intergenic | 45.0% | |
| AAGGTGAGGCTTTCTTCAAC+AGG | - | chr7_4:52688038-52688057 | Msa1162180:CDS | 45.0% | |
| TTGGTCGTGGTTGTAGTTGT+GGG | + | chr7_4:52688160-52688179 | None:intergenic | 45.0% | |
| ATTGGTCGTGGTTGTAGTTG+TGG | + | chr7_4:52688161-52688180 | None:intergenic | 45.0% | |
| TACAACCACGACCAATTCCA+AGG | - | chr7_4:52688165-52688184 | Msa1162180:CDS | 45.0% | |
| AGTAACCTTGGAATTGGTCG+TGG | + | chr7_4:52688173-52688192 | None:intergenic | 45.0% | |
| !! | CAACGGCTTCTTTAGGTTGT+TGG | + | chr7_4:52688825-52688844 | None:intergenic | 45.0% |
| ACCTAAAGAAGCCGTTGTTG+AGG | - | chr7_4:52688828-52688847 | Msa1162180:intron | 45.0% | |
| ACCTCAACAACGGCTTCTTT+AGG | + | chr7_4:52688832-52688851 | None:intergenic | 45.0% | |
| AAGAGGCTAGCAACAAGGAA+GGG | - | chr7_4:52689019-52689038 | Msa1162180:intron | 45.0% | |
| GGGTTCTACTAAGAAAGGAG+GGG | - | chr7_4:52689039-52689058 | Msa1162180:intron | 45.0% | |
| GGTTCTACTAAGAAAGGAGG+GGG | - | chr7_4:52689040-52689059 | Msa1162180:intron | 45.0% | |
| GTTCTACTAAGAAAGGAGGG+GGG | - | chr7_4:52689041-52689060 | Msa1162180:intron | 45.0% | |
| AGAGTAAGGGACGCAAAGAA+AGG | - | chr7_4:52689113-52689132 | Msa1162180:CDS | 45.0% | |
| GAGTAAGGGACGCAAAGAAA+GGG | - | chr7_4:52689114-52689133 | Msa1162180:CDS | 45.0% | |
| CCTTCCTTGACAACAAGCAA+GGG | + | chr7_4:52689142-52689161 | None:intergenic | 45.0% | |
| !! | CCTTGCTTGTTGTCAAGGAA+GGG | - | chr7_4:52689140-52689159 | Msa1162180:CDS | 45.0% |
| GCAGAGAGATCAACCCATTT+GGG | + | chr7_4:52687968-52687987 | None:intergenic | 45.0% | |
| AGCAGAGAGATCAACCCATT+TGG | + | chr7_4:52687969-52687988 | None:intergenic | 45.0% | |
| ATCAACAAGAGGCTCATTGG+AGG | + | chr7_4:52687993-52688012 | None:intergenic | 45.0% | |
| AAGGTGAGGCTTTCTTCAAC+AGG | - | chr7_4:52688038-52688057 | Msa1162180:CDS | 45.0% | |
| TTGGTCGTGGTTGTAGTTGT+GGG | + | chr7_4:52688160-52688179 | None:intergenic | 45.0% | |
| ATTGGTCGTGGTTGTAGTTG+TGG | + | chr7_4:52688161-52688180 | None:intergenic | 45.0% | |
| TACAACCACGACCAATTCCA+AGG | - | chr7_4:52688165-52688184 | Msa1162180:CDS | 45.0% | |
| AGTAACCTTGGAATTGGTCG+TGG | + | chr7_4:52688173-52688192 | None:intergenic | 45.0% | |
| !! | CAACGGCTTCTTTAGGTTGT+TGG | + | chr7_4:52688825-52688844 | None:intergenic | 45.0% |
| ACCTAAAGAAGCCGTTGTTG+AGG | - | chr7_4:52688828-52688847 | Msa1162180:intron | 45.0% | |
| ACCTCAACAACGGCTTCTTT+AGG | + | chr7_4:52688832-52688851 | None:intergenic | 45.0% | |
| AAGAGGCTAGCAACAAGGAA+GGG | - | chr7_4:52689019-52689038 | Msa1162180:intron | 45.0% | |
| GGGTTCTACTAAGAAAGGAG+GGG | - | chr7_4:52689039-52689058 | Msa1162180:intron | 45.0% | |
| GGTTCTACTAAGAAAGGAGG+GGG | - | chr7_4:52689040-52689059 | Msa1162180:intron | 45.0% | |
| GTTCTACTAAGAAAGGAGGG+GGG | - | chr7_4:52689041-52689060 | Msa1162180:intron | 45.0% | |
| AGAGTAAGGGACGCAAAGAA+AGG | - | chr7_4:52689113-52689132 | Msa1162180:CDS | 45.0% | |
| GAGTAAGGGACGCAAAGAAA+GGG | - | chr7_4:52689114-52689133 | Msa1162180:CDS | 45.0% | |
| CCTTCCTTGACAACAAGCAA+GGG | + | chr7_4:52689142-52689161 | None:intergenic | 45.0% | |
| !! | CCTTGCTTGTTGTCAAGGAA+GGG | - | chr7_4:52689140-52689159 | Msa1162180:CDS | 45.0% |
| !!! | CTGGTTTTGCACTCAAGGTG+AGG | - | chr7_4:52688024-52688043 | Msa1162180:CDS | 50.0% |
| CGAGACCGTGTCACACATTT+AGG | - | chr7_4:52688587-52688606 | Msa1162180:intron | 50.0% | |
| GAAGAGGCTAGCAACAAGGA+AGG | - | chr7_4:52689018-52689037 | Msa1162180:intron | 50.0% | |
| AAAGGAGGGGGGAATGAGAA+GGG | - | chr7_4:52689052-52689071 | Msa1162180:intron | 50.0% | |
| !! | GGTACCCTTGCTTGTTGTCA+AGG | - | chr7_4:52689135-52689154 | Msa1162180:CDS | 50.0% |
| !! | CCCTTGCTTGTTGTCAAGGA+AGG | - | chr7_4:52689139-52689158 | Msa1162180:CDS | 50.0% |
| CCCTTCCTTGACAACAAGCA+AGG | + | chr7_4:52689143-52689162 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTGCACTCAAGGTG+AGG | - | chr7_4:52688024-52688043 | Msa1162180:CDS | 50.0% |
| CGAGACCGTGTCACACATTT+AGG | - | chr7_4:52688587-52688606 | Msa1162180:intron | 50.0% | |
| GAAGAGGCTAGCAACAAGGA+AGG | - | chr7_4:52689018-52689037 | Msa1162180:intron | 50.0% | |
| AAAGGAGGGGGGAATGAGAA+GGG | - | chr7_4:52689052-52689071 | Msa1162180:intron | 50.0% | |
| !! | GGTACCCTTGCTTGTTGTCA+AGG | - | chr7_4:52689135-52689154 | Msa1162180:CDS | 50.0% |
| !! | CCCTTGCTTGTTGTCAAGGA+AGG | - | chr7_4:52689139-52689158 | Msa1162180:CDS | 50.0% |
| CCCTTCCTTGACAACAAGCA+AGG | + | chr7_4:52689143-52689162 | None:intergenic | 50.0% | |
| AGAACTTCGACGCGCCCAAA+TGG | - | chr7_4:52687951-52687970 | Msa1162180:CDS | 55.0% | |
| GAACTTCGACGCGCCCAAAT+GGG | - | chr7_4:52687952-52687971 | Msa1162180:CDS | 55.0% | |
| GAAAGGAGGGGGGAATGAGA+AGG | - | chr7_4:52689051-52689070 | Msa1162180:intron | 55.0% | |
| AGAACTTCGACGCGCCCAAA+TGG | - | chr7_4:52687951-52687970 | Msa1162180:CDS | 55.0% | |
| GAACTTCGACGCGCCCAAAT+GGG | - | chr7_4:52687952-52687971 | Msa1162180:CDS | 55.0% | |
| GAAAGGAGGGGGGAATGAGA+AGG | - | chr7_4:52689051-52689070 | Msa1162180:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 52687637 | 52689466 | 52687637 | ID=Msa1162180;Name=Msa1162180 |
| chr7_4 | mRNA | 52687637 | 52689466 | 52687637 | ID=Msa1162180-mRNA-1;Parent=Msa1162180;Name=Msa1162180-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|1|1|1|0.75|0.8|5|295|251 |
| chr7_4 | exon | 52687637 | 52688403 | 52687637 | ID=Msa1162180-mRNA-1:exon:15172;Parent=Msa1162180-mRNA-1 |
| chr7_4 | exon | 52688735 | 52688796 | 52688735 | ID=Msa1162180-mRNA-1:exon:15171;Parent=Msa1162180-mRNA-1 |
| chr7_4 | exon | 52688917 | 52688984 | 52688917 | ID=Msa1162180-mRNA-1:exon:15170;Parent=Msa1162180-mRNA-1 |
| chr7_4 | exon | 52689063 | 52689216 | 52689063 | ID=Msa1162180-mRNA-1:exon:15169;Parent=Msa1162180-mRNA-1 |
| chr7_4 | exon | 52689399 | 52689466 | 52689399 | ID=Msa1162180-mRNA-1:exon:15168;Parent=Msa1162180-mRNA-1 |
| chr7_4 | five_prime_UTR | 52689399 | 52689466 | 52689399 | ID=Msa1162180-mRNA-1:five_prime_utr;Parent=Msa1162180-mRNA-1 |
| chr7_4 | CDS | 52689063 | 52689216 | 52689063 | ID=Msa1162180-mRNA-1:cds;Parent=Msa1162180-mRNA-1 |
| chr7_4 | CDS | 52688917 | 52688984 | 52688917 | ID=Msa1162180-mRNA-1:cds;Parent=Msa1162180-mRNA-1 |
| chr7_4 | CDS | 52688735 | 52688796 | 52688735 | ID=Msa1162180-mRNA-1:cds;Parent=Msa1162180-mRNA-1 |
| chr7_4 | CDS | 52687932 | 52688403 | 52687932 | ID=Msa1162180-mRNA-1:cds;Parent=Msa1162180-mRNA-1 |
| chr7_4 | three_prime_UTR | 52687637 | 52687931 | 52687637 | ID=Msa1162180-mRNA-1:three_prime_utr;Parent=Msa1162180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
