AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0735780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735780 MtrunA17_Chr5g0433181 95.166 662 16 7 1 657 1 651 0.0 1248
Msa0735780 MtrunA17_Chr3g0109071 41.107 759 246 26 1 653 1 664 9.86e-107 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735780 AT5G37010.1 36.579 719 278 31 1 651 1 609 2.73e-71 243
Msa0735780 AT1G65710.1 37.456 566 185 23 66 603 31 455 7.61e-58 202

Find 140 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGTGAAATGGGGTTTA+AGG 0.156691 5_1:-51459409 None:intergenic
CAATGGAACATTTGTTCTTC+TGG 0.205146 5_1:+51461851 Msa0735780:CDS
ATAGTTGTGATGAAGATATT+TGG 0.223331 5_1:+51461994 Msa0735780:exon
CTAAGAGGGTTTCTTCTATA+AGG 0.245007 5_1:-51460582 None:intergenic
AACAGTAATGGTTCTGGTTC+AGG 0.276473 5_1:+51460273 Msa0735780:CDS
AGATTAAGCAGAAGCTCTTC+TGG 0.279054 5_1:+51459922 Msa0735780:CDS
ACATTCCCATTTCCTCTTGC+AGG 0.287911 5_1:-51460489 None:intergenic
CGTTGATCTCTTTCTCTACT+TGG 0.292517 5_1:-51460174 None:intergenic
TGTGGATAAGCAAGTGAATT+AGG 0.300136 5_1:-51460615 None:intergenic
GAAGAAGAAGAAGCTTTCTT+TGG 0.300588 5_1:-51460132 None:intergenic
GGTGGATTGGTTAGAGGTTC+GGG 0.304904 5_1:-51461485 None:intergenic
TTGTACTAGGCCAGGGAAAA+TGG 0.305744 5_1:+51460296 Msa0735780:CDS
AAAGCTTCTTCTTCTTCTAA+TGG 0.317765 5_1:+51460138 Msa0735780:CDS
TTGTCCCTCATTTCAACATT+TGG 0.318273 5_1:-51461278 None:intergenic
AACAATTGAAATGGTGAAAT+GGG 0.323280 5_1:-51459417 None:intergenic
TGGTGGATTGGTTAGAGGTT+CGG 0.323939 5_1:-51461486 None:intergenic
ATTTCACCATTTCAATTGTT+AGG 0.327114 5_1:+51459420 Msa0735780:five_prime_UTR
ATGTCACCTGCTAGAGGAAA+TGG 0.327932 5_1:+51460429 Msa0735780:CDS
ATGTCACCTGCAAGAGGAAA+TGG 0.328874 5_1:+51460483 Msa0735780:CDS
GGAAGAAGATCATCTGAAAA+TGG 0.337292 5_1:+51460234 Msa0735780:CDS
TCTTCAGCTAGGAAATATTC+TGG 0.337380 5_1:+51459961 Msa0735780:CDS
AAGCTTTCTTTGGTGAATTC+CGG 0.339092 5_1:-51460122 None:intergenic
ATCATTGAACAGCAACAATA+AGG 0.348913 5_1:+51459825 Msa0735780:CDS
AATTGAAGTTGAGACTATTC+AGG 0.351582 5_1:+51460689 Msa0735780:CDS
TGTGAGGATCAAGAGTCTTC+AGG 0.358544 5_1:+51461794 Msa0735780:CDS
CCACAATCAAATGCTAATAA+TGG 0.358815 5_1:+51460633 Msa0735780:CDS
TACTGTTACATCATTGGTTA+TGG 0.360201 5_1:+51460332 Msa0735780:CDS
GATTCTACAAATGATGATTC+AGG 0.361087 5_1:-51461695 None:intergenic
TAACAATTGAAATGGTGAAA+TGG 0.361127 5_1:-51459418 None:intergenic
AGTTCAGAACAAAGGCAAAA+AGG 0.367310 5_1:+51460665 Msa0735780:CDS
GATGAACAAAAGAGAGTTCA+TGG 0.370002 5_1:+51460042 Msa0735780:CDS
TATGAGGAGGTAGTGGGAAC+TGG 0.374450 5_1:-51459372 None:intergenic
TCCTGCTACTGTTACATCAT+TGG 0.374850 5_1:+51460326 Msa0735780:CDS
GTTTGTGGTGGATTGGTTAG+AGG 0.379183 5_1:-51461491 None:intergenic
CTGGTGATTCATCGGATTGT+TGG 0.383426 5_1:+51461870 Msa0735780:CDS
AGTTTGATATTTCTTCTGTT+TGG 0.384721 5_1:+51462059 Msa0735780:three_prime_UTR
TGCTTAAACATGCACCCATT+TGG 0.391903 5_1:-51459456 None:intergenic
GTGGAGGAGAAGGTGTTAAG+AGG 0.397596 5_1:+51460370 Msa0735780:CDS
AAGAATGTGGTGATGCCATC+TGG 0.402994 5_1:+51461410 Msa0735780:CDS
TTGATATTTCTTCTGTTTGG+TGG 0.414171 5_1:+51462062 Msa0735780:three_prime_UTR
GTTCTGGTTCAGGTTGTACT+AGG 0.417475 5_1:+51460283 Msa0735780:CDS
CAGCAGAGTTGCTATGGAAA+AGG 0.418147 5_1:+51461319 Msa0735780:CDS
TAAGATCAGCAACAGCTTCA+AGG 0.424166 5_1:-51461619 None:intergenic
GGAAATTTGAATTTCATATG+AGG 0.424348 5_1:-51459388 None:intergenic
AAATGATTTGGTGGAAGAAA+GGG 0.427395 5_1:-51459518 None:intergenic
TGATATTTCTTCTGTTTGGT+GGG 0.430604 5_1:+51462063 Msa0735780:three_prime_UTR
CATCAGCATAGTGGTGGTAT+TGG 0.433740 5_1:+51461944 Msa0735780:CDS
CGAAGAGTGAGTAGATCGCC+TGG 0.440711 5_1:+51460213 Msa0735780:CDS
AAAATGATTTGGTGGAAGAA+AGG 0.442559 5_1:-51459519 None:intergenic
GTTCCATCACAACAAAATGA+TGG 0.444007 5_1:+51459778 Msa0735780:CDS
GGTTCAGGTTGTACTAGGCC+AGG 0.450436 5_1:+51460288 Msa0735780:CDS
TGAGGGACAACACAAGAAAC+AGG 0.453620 5_1:+51461291 Msa0735780:CDS
GGTCACAAACACAAACCAAA+TGG 0.456343 5_1:+51459441 Msa0735780:exon
AACAATAACAGTAATGGTTC+TGG 0.460724 5_1:+51460267 Msa0735780:CDS
AAGGAGTAATGAAGTATATG+AGG 0.468120 5_1:-51461513 None:intergenic
TTGTTCTTCTGGTGATTCAT+CGG 0.470946 5_1:+51461862 Msa0735780:CDS
TTAGGATCAACTTCACTAAG+AGG 0.472460 5_1:-51460597 None:intergenic
CCACACGAAGGAACAACAAC+AGG 0.477360 5_1:+51461352 Msa0735780:CDS
CCATTCCCATTTCCTCTAGC+AGG 0.477412 5_1:-51460435 None:intergenic
CAACAAGTTCAACTTTCTCT+AGG 0.479383 5_1:+51461648 Msa0735780:CDS
AGTAACAATGGTGGAGGAGA+AGG 0.480978 5_1:+51460360 Msa0735780:CDS
ATCAGCAACCTTCTCTTAGC+AGG 0.482494 5_1:+51460529 Msa0735780:CDS
TTCGAGATTGAATTCAAAAG+AGG 0.485046 5_1:+51461895 Msa0735780:CDS
ATCACAACAAAATGATGGGT+TGG 0.488194 5_1:+51459783 Msa0735780:CDS
CTTCTTCTTCTTCTAATGGA+AGG 0.491446 5_1:+51460142 Msa0735780:CDS
AGCAGAGTTGCTATGGAAAA+GGG 0.493636 5_1:+51461320 Msa0735780:CDS
TTGTGACCTAACAATTGAAA+TGG 0.493715 5_1:-51459426 None:intergenic
GACAAACAGCAGAGTTGCTA+TGG 0.496318 5_1:+51461313 Msa0735780:CDS
ACCAATGATGTAACAGTAGC+AGG 0.497665 5_1:-51460327 None:intergenic
AATTTCATATGAGGAGGTAG+TGG 0.501260 5_1:-51459379 None:intergenic
GATATTTCTTCTGTTTGGTG+GGG 0.502767 5_1:+51462064 Msa0735780:three_prime_UTR
CCTGTTGTTGTTCCTTCGTG+TGG 0.502796 5_1:-51461352 None:intergenic
TGTCACCTGCTAGAGGAAAT+GGG 0.503749 5_1:+51460430 Msa0735780:CDS
GTCACATACTTATGTAAACT+TGG 0.509026 5_1:-51461749 None:intergenic
TGTCACCTGCAAGAGGAAAT+GGG 0.509249 5_1:+51460484 Msa0735780:CDS
AGAGAAAGTTGAACTTGTTG+TGG 0.509724 5_1:-51461645 None:intergenic
AATGAAGTATATGAGGTTTG+TGG 0.520058 5_1:-51461506 None:intergenic
ATATGAGGTTTGTGGTGGAT+TGG 0.520566 5_1:-51461498 None:intergenic
CTGCTACTTCTTCTTCAGCT+AGG 0.521567 5_1:+51459950 Msa0735780:CDS
CCATTATTAGCATTTGATTG+TGG 0.522575 5_1:-51460633 None:intergenic
TGGAGGAGAAGGTGTTAAGA+GGG 0.522678 5_1:+51460371 Msa0735780:CDS
CATAGTGGTGGTATTGGACG+TGG 0.522968 5_1:+51461950 Msa0735780:CDS
GTCACAAACACAAACCAAAT+GGG 0.526346 5_1:+51459442 Msa0735780:exon
GAGAGGTGGTTCACTTTGTG+AGG 0.532630 5_1:+51461778 Msa0735780:CDS
CAAGCTTTGTTGAGACAAGC+TGG 0.533501 5_1:-51461590 None:intergenic
ATAACCACCGTCCGCGTCAC+CGG 0.540741 5_1:+51460103 Msa0735780:CDS
ACAACAACAGGAAGAGATCA+AGG 0.544746 5_1:+51461364 Msa0735780:CDS
GATAAAAGTAACAATGGTGG+AGG 0.545003 5_1:+51460354 Msa0735780:CDS
TTCCATCACAACAAAATGAT+GGG 0.545629 5_1:+51459779 Msa0735780:CDS
AGAAACCAAATGTTGAAATG+AGG 0.549758 5_1:+51461273 Msa0735780:intron
ATGAGGAGGTAGTGGGAACT+GGG 0.550408 5_1:-51459371 None:intergenic
GAAACCAAATGTTGAAATGA+GGG 0.552067 5_1:+51461274 Msa0735780:intron
GGGTGTGGAAAATGATTTGG+TGG 0.556301 5_1:-51459527 None:intergenic
AATAAGGTTGGTGGCGCTGT+TGG 0.556637 5_1:+51459841 Msa0735780:CDS
ATTGGTTAGAGGTTCGGGAT+TGG 0.557115 5_1:-51461480 None:intergenic
GTGAATTCCGGTGACGCGGA+CGG 0.557292 5_1:-51460110 None:intergenic
TTGAACAGCAACAATAAGGT+TGG 0.559602 5_1:+51459829 Msa0735780:CDS
CAATCAAATGCTAATAATGG+TGG 0.560234 5_1:+51460636 Msa0735780:CDS
TAGGATCAACTTCACTAAGA+GGG 0.561077 5_1:-51460596 None:intergenic
AACAACAACAATAACAGTAA+TGG 0.562799 5_1:+51460261 Msa0735780:CDS
AACAGCAACAATAAGGTTGG+TGG 0.565205 5_1:+51459832 Msa0735780:CDS
CTGCTTCTTGTAATCCCAGA+TGG 0.566170 5_1:-51461425 None:intergenic
AATGATTTGGTGGAAGAAAG+GGG 0.570280 5_1:-51459517 None:intergenic
GTTATGGATAAAAGTAACAA+TGG 0.571865 5_1:+51460348 Msa0735780:CDS
ATCAGCAACAGCTTCAAGGA+TGG 0.572404 5_1:-51461615 None:intergenic
GAGTTATTCCTGCTAAGAGA+AGG 0.573600 5_1:-51460537 None:intergenic
ATTTCATATGAGGAGGTAGT+GGG 0.585667 5_1:-51459378 None:intergenic
CCTGCTAGAGGAAATGGGAA+TGG 0.587852 5_1:+51460435 Msa0735780:CDS
CGTTCAATGTCACCTGCAAG+AGG 0.592581 5_1:+51460477 Msa0735780:CDS
TTAGCAGGAATAACTCTGCA+AGG 0.592969 5_1:+51460544 Msa0735780:CDS
AATTCCGGTGACGCGGACGG+TGG 0.596005 5_1:-51460107 None:intergenic
CGTTCTATGTCACCTGCTAG+AGG 0.596416 5_1:+51460423 Msa0735780:CDS
ATGAACAAAAGAGAGTTCAT+GGG 0.597175 5_1:+51460043 Msa0735780:CDS
AGGAATATGATGGTGTTGCT+CGG 0.600454 5_1:+51460079 Msa0735780:CDS
TATGTGACTGTTAAGAGAGG+TGG 0.603741 5_1:+51461764 Msa0735780:CDS
AGAATGTGGTGATGCCATCT+GGG 0.603911 5_1:+51461411 Msa0735780:CDS
GAGTGTGATCATCAGCATAG+TGG 0.606136 5_1:+51461935 Msa0735780:CDS
CAATGATGCAATTTCAGCTG+AGG 0.608354 5_1:+51460020 Msa0735780:CDS
TTTGGTGAATTCCGGTGACG+CGG 0.608706 5_1:-51460114 None:intergenic
GTTCAGGTTGTACTAGGCCA+GGG 0.608850 5_1:+51460289 Msa0735780:CDS
TGAGTAGTGGTCAACAACAA+TGG 0.614677 5_1:+51461834 Msa0735780:CDS
AATTTGAATTTCATATGAGG+AGG 0.615779 5_1:-51459385 None:intergenic
AATAGTTTCACTGTGAGTAG+TGG 0.617083 5_1:+51461821 Msa0735780:CDS
ATGGATAAAAGTAACAATGG+TGG 0.618521 5_1:+51460351 Msa0735780:CDS
GAAGTATATGAGGTTTGTGG+TGG 0.620927 5_1:-51461503 None:intergenic
TTGAGTTTGAGATCCGTTGG+AGG 0.621094 5_1:-51459248 None:intergenic
GATAACAGTGAGGAATATGA+TGG 0.621876 5_1:+51460069 Msa0735780:CDS
TGTTGTGAGTGATGATGTGA+TGG 0.622257 5_1:+51461724 Msa0735780:CDS
ACAATTGAAATGGTGAAATG+GGG 0.623246 5_1:-51459416 None:intergenic
GGAAACAAAGTTCAGAACAA+AGG 0.631074 5_1:+51460657 Msa0735780:CDS
ATGATTTGGTGGAAGAAAGG+GGG 0.632458 5_1:-51459516 None:intergenic
CAAGCTGGAAGAGAAACAGA+AGG 0.639034 5_1:-51461575 None:intergenic
AACTTTCAGATATATTAATG+TGG 0.640475 5_1:-51459329 None:intergenic
ACATTGTGTTGAACAGTGAA+AGG 0.652397 5_1:-51459757 None:intergenic
TGTGATCATCAGCATAGTGG+TGG 0.669655 5_1:+51461938 Msa0735780:CDS
GGGTGTGAATTGCCACACGA+AGG 0.680878 5_1:+51461340 Msa0735780:CDS
AAGTATGTGACTGTTAAGAG+AGG 0.686254 5_1:+51461761 Msa0735780:CDS
TAATGCTATTGTGAAGAATG+TGG 0.688273 5_1:+51461397 Msa0735780:CDS
CTAGCAGGTGACATAGAACG+TGG 0.698561 5_1:-51460420 None:intergenic
TCATGGGAGTGATAACAGTG+AGG 0.744139 5_1:+51460059 Msa0735780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAATAAAAATTTACT+TGG - chr5_1:51460797-51460816 None:intergenic 10.0%
!!! TTTTTATAATTTCATAGAAA+TGG + chr5_1:51460862-51460881 Msa0735780:intron 10.0%
!!! ATGATAAAAATCTCTTTTTT+TGG - chr5_1:51459682-51459701 None:intergenic 15.0%
!! GAAATTATAAAAACAATCAT+TGG - chr5_1:51460855-51460874 None:intergenic 15.0%
!! AACTTTCAGATATATTAATG+TGG - chr5_1:51459332-51459351 None:intergenic 20.0%
!! AGTATATATAGATAATGATG+TGG + chr5_1:51460770-51460789 Msa0735780:intron 20.0%
!!! CATATTTTTTCTTAATCATC+CGG - chr5_1:51461095-51461114 None:intergenic 20.0%
!!! GACATGAAATTTGAAATTAT+TGG - chr5_1:51461154-51461173 None:intergenic 20.0%
!! TCATGTCATAACAAAATTAA+TGG + chr5_1:51461167-51461186 Msa0735780:intron 20.0%
!! AAGAATGTACATAAAAATGA+TGG - chr5_1:51461227-51461246 None:intergenic 20.0%
!! TAATGAAAAACACATAAAAG+AGG - chr5_1:51462109-51462128 None:intergenic 20.0%
! AATTTGAATTTCATATGAGG+AGG - chr5_1:51459388-51459407 None:intergenic 25.0%
! GGAAATTTGAATTTCATATG+AGG - chr5_1:51459391-51459410 None:intergenic 25.0%
! AACAATTGAAATGGTGAAAT+GGG - chr5_1:51459420-51459439 None:intergenic 25.0%
! TAACAATTGAAATGGTGAAA+TGG - chr5_1:51459421-51459440 None:intergenic 25.0%
! ATTTCACCATTTCAATTGTT+AGG + chr5_1:51459420-51459439 Msa0735780:five_prime_UTR 25.0%
!!! AGAATGTTTTTGTTGAATTG+GGG - chr5_1:51459551-51459570 None:intergenic 25.0%
!!! CAGAATGTTTTTGTTGAATT+GGG - chr5_1:51459552-51459571 None:intergenic 25.0%
!!! TCAGAATGTTTTTGTTGAAT+TGG - chr5_1:51459553-51459572 None:intergenic 25.0%
!!! TTTTCTCTCTTTTTTCATCA+TGG - chr5_1:51459720-51459739 None:intergenic 25.0%
!!! GATGCAATTTTAATTCAATG+TGG + chr5_1:51459898-51459917 Msa0735780:CDS 25.0%
! AACAACAACAATAACAGTAA+TGG + chr5_1:51460261-51460280 Msa0735780:CDS 25.0%
! GTTATGGATAAAAGTAACAA+TGG + chr5_1:51460348-51460367 Msa0735780:CDS 25.0%
! TGATTAAGGTTGAATAGTTT+CGG + chr5_1:51460970-51460989 Msa0735780:intron 25.0%
! ATAGTTGTGATGAAGATATT+TGG + chr5_1:51461994-51462013 Msa0735780:exon 25.0%
! AGTTTGATATTTCTTCTGTT+TGG + chr5_1:51462059-51462078 Msa0735780:three_prime_UTR 25.0%
ACAATTGAAATGGTGAAATG+GGG - chr5_1:51459419-51459438 None:intergenic 30.0%
TTGTGACCTAACAATTGAAA+TGG - chr5_1:51459429-51459448 None:intergenic 30.0%
!! AAATGATTTGGTGGAAGAAA+GGG - chr5_1:51459521-51459540 None:intergenic 30.0%
!! AAAATGATTTGGTGGAAGAA+AGG - chr5_1:51459522-51459541 None:intergenic 30.0%
!! GAATGTTTTTGTTGAATTGG+GGG - chr5_1:51459550-51459569 None:intergenic 30.0%
!!! GTTGTTTTTGTTGTTCTTGA+GGG - chr5_1:51459605-51459624 None:intergenic 30.0%
!!! TGTTGTTTTTGTTGTTCTTG+AGG - chr5_1:51459606-51459625 None:intergenic 30.0%
! CATGTTCTTTTACAACTTCT+GGG - chr5_1:51459654-51459673 None:intergenic 30.0%
! TCATGTTCTTTTACAACTTC+TGG - chr5_1:51459655-51459674 None:intergenic 30.0%
TTCCATCACAACAAAATGAT+GGG + chr5_1:51459779-51459798 Msa0735780:CDS 30.0%
ATCATTGAACAGCAACAATA+AGG + chr5_1:51459825-51459844 Msa0735780:CDS 30.0%
ATGAACAAAAGAGAGTTCAT+GGG + chr5_1:51460043-51460062 Msa0735780:CDS 30.0%
AAAGCTTCTTCTTCTTCTAA+TGG + chr5_1:51460138-51460157 Msa0735780:CDS 30.0%
AACAATAACAGTAATGGTTC+TGG + chr5_1:51460267-51460286 Msa0735780:CDS 30.0%
! TACTGTTACATCATTGGTTA+TGG + chr5_1:51460332-51460351 Msa0735780:CDS 30.0%
ATGGATAAAAGTAACAATGG+TGG + chr5_1:51460351-51460370 Msa0735780:CDS 30.0%
CCATTATTAGCATTTGATTG+TGG - chr5_1:51460636-51460655 None:intergenic 30.0%
CCACAATCAAATGCTAATAA+TGG + chr5_1:51460633-51460652 Msa0735780:CDS 30.0%
CAATCAAATGCTAATAATGG+TGG + chr5_1:51460636-51460655 Msa0735780:CDS 30.0%
AATTGAAGTTGAGACTATTC+AGG + chr5_1:51460689-51460708 Msa0735780:CDS 30.0%
TGGTTAATGTGCTTTGATTA+AGG + chr5_1:51460956-51460975 Msa0735780:intron 30.0%
AGCTAAAAATTGCTACACTA+AGG - chr5_1:51461013-51461032 None:intergenic 30.0%
! ATAAAAATGATGGTGCTCAT+AGG - chr5_1:51461217-51461236 None:intergenic 30.0%
AGAAACCAAATGTTGAAATG+AGG + chr5_1:51461273-51461292 Msa0735780:intron 30.0%
GAAACCAAATGTTGAAATGA+GGG + chr5_1:51461274-51461293 Msa0735780:intron 30.0%
TAATGCTATTGTGAAGAATG+TGG + chr5_1:51461397-51461416 Msa0735780:CDS 30.0%
AATGAAGTATATGAGGTTTG+TGG - chr5_1:51461509-51461528 None:intergenic 30.0%
AAGGAGTAATGAAGTATATG+AGG - chr5_1:51461516-51461535 None:intergenic 30.0%
GATTCTACAAATGATGATTC+AGG - chr5_1:51461698-51461717 None:intergenic 30.0%
GTCACATACTTATGTAAACT+TGG - chr5_1:51461752-51461771 None:intergenic 30.0%
TTCGAGATTGAATTCAAAAG+AGG + chr5_1:51461895-51461914 Msa0735780:CDS 30.0%
TTGATATTTCTTCTGTTTGG+TGG + chr5_1:51462062-51462081 Msa0735780:three_prime_UTR 30.0%
TGATATTTCTTCTGTTTGGT+GGG + chr5_1:51462063-51462082 Msa0735780:three_prime_UTR 30.0%
!!! TTTTTGAGTTTGAGATCCGT+TGG - chr5_1:51459254-51459273 None:intergenic 35.0%
ATTTCATATGAGGAGGTAGT+GGG - chr5_1:51459381-51459400 None:intergenic 35.0%
AATTTCATATGAGGAGGTAG+TGG - chr5_1:51459382-51459401 None:intergenic 35.0%
AAATGGTGAAATGGGGTTTA+AGG - chr5_1:51459412-51459431 None:intergenic 35.0%
GTCACAAACACAAACCAAAT+GGG + chr5_1:51459442-51459461 Msa0735780:exon 35.0%
!! AATGATTTGGTGGAAGAAAG+GGG - chr5_1:51459520-51459539 None:intergenic 35.0%
!! AGTGAAAGGTGTGATTTTGA+TGG - chr5_1:51459746-51459765 None:intergenic 35.0%
ACATTGTGTTGAACAGTGAA+AGG - chr5_1:51459760-51459779 None:intergenic 35.0%
GTTCCATCACAACAAAATGA+TGG + chr5_1:51459778-51459797 Msa0735780:CDS 35.0%
!! AACCCATCATTTTGTTGTGA+TGG - chr5_1:51459784-51459803 None:intergenic 35.0%
!! ATCACAACAAAATGATGGGT+TGG + chr5_1:51459783-51459802 Msa0735780:CDS 35.0%
TTGAACAGCAACAATAAGGT+TGG + chr5_1:51459829-51459848 Msa0735780:CDS 35.0%
TCTTCAGCTAGGAAATATTC+TGG + chr5_1:51459961-51459980 Msa0735780:CDS 35.0%
GATGAACAAAAGAGAGTTCA+TGG + chr5_1:51460042-51460061 Msa0735780:CDS 35.0%
GATAACAGTGAGGAATATGA+TGG + chr5_1:51460069-51460088 Msa0735780:CDS 35.0%
AAGCTTTCTTTGGTGAATTC+CGG - chr5_1:51460125-51460144 None:intergenic 35.0%
GAAGAAGAAGAAGCTTTCTT+TGG - chr5_1:51460135-51460154 None:intergenic 35.0%
CTTCTTCTTCTTCTAATGGA+AGG + chr5_1:51460142-51460161 Msa0735780:CDS 35.0%
! TTTTCAGATGATCTTCTTCC+AGG - chr5_1:51460234-51460253 None:intergenic 35.0%
GGAAGAAGATCATCTGAAAA+TGG + chr5_1:51460234-51460253 Msa0735780:CDS 35.0%
GATAAAAGTAACAATGGTGG+AGG + chr5_1:51460354-51460373 Msa0735780:CDS 35.0%
CTAAGAGGGTTTCTTCTATA+AGG - chr5_1:51460585-51460604 None:intergenic 35.0%
TAGGATCAACTTCACTAAGA+GGG - chr5_1:51460599-51460618 None:intergenic 35.0%
TTAGGATCAACTTCACTAAG+AGG - chr5_1:51460600-51460619 None:intergenic 35.0%
TGTGGATAAGCAAGTGAATT+AGG - chr5_1:51460618-51460637 None:intergenic 35.0%
GGAAACAAAGTTCAGAACAA+AGG + chr5_1:51460657-51460676 Msa0735780:CDS 35.0%
AGTTCAGAACAAAGGCAAAA+AGG + chr5_1:51460665-51460684 Msa0735780:CDS 35.0%
ATCAAGTGTTTGAGCTTCAA+TGG + chr5_1:51460936-51460955 Msa0735780:intron 35.0%
TTGTCCCTCATTTCAACATT+TGG - chr5_1:51461281-51461300 None:intergenic 35.0%
!!! GGAAGTTTTGAATGTCTTCA+AGG - chr5_1:51461535-51461554 None:intergenic 35.0%
! GTTGTGTTGTGTTCTTTTGA+TGG - chr5_1:51461556-51461575 None:intergenic 35.0%
!! AGAGAAAGTTGAACTTGTTG+TGG - chr5_1:51461648-51461667 None:intergenic 35.0%
CAACAAGTTCAACTTTCTCT+AGG + chr5_1:51461648-51461667 Msa0735780:CDS 35.0%
AAGTATGTGACTGTTAAGAG+AGG + chr5_1:51461761-51461780 Msa0735780:CDS 35.0%
AATAGTTTCACTGTGAGTAG+TGG + chr5_1:51461821-51461840 Msa0735780:CDS 35.0%
CAATGGAACATTTGTTCTTC+TGG + chr5_1:51461851-51461870 Msa0735780:CDS 35.0%
TTGTTCTTCTGGTGATTCAT+CGG + chr5_1:51461862-51461881 Msa0735780:CDS 35.0%
! GATATTTCTTCTGTTTGGTG+GGG + chr5_1:51462064-51462083 Msa0735780:three_prime_UTR 35.0%
GGTCACAAACACAAACCAAA+TGG + chr5_1:51459441-51459460 Msa0735780:exon 40.0%
TGCTTAAACATGCACCCATT+TGG - chr5_1:51459459-51459478 None:intergenic 40.0%
!! ATGATTTGGTGGAAGAAAGG+GGG - chr5_1:51459519-51459538 None:intergenic 40.0%
! TTTTTGTTGAATTGGGGGTG+TGG - chr5_1:51459545-51459564 None:intergenic 40.0%
AACAGCAACAATAAGGTTGG+TGG + chr5_1:51459832-51459851 Msa0735780:CDS 40.0%
AGATTAAGCAGAAGCTCTTC+TGG + chr5_1:51459922-51459941 Msa0735780:CDS 40.0%
CAATGATGCAATTTCAGCTG+AGG + chr5_1:51460020-51460039 Msa0735780:CDS 40.0%
!! AGGAATATGATGGTGTTGCT+CGG + chr5_1:51460079-51460098 Msa0735780:CDS 40.0%
CGTTGATCTCTTTCTCTACT+TGG - chr5_1:51460177-51460196 None:intergenic 40.0%
!! AACAGTAATGGTTCTGGTTC+AGG + chr5_1:51460273-51460292 Msa0735780:CDS 40.0%
TCCTGCTACTGTTACATCAT+TGG + chr5_1:51460326-51460345 Msa0735780:CDS 40.0%
ACCAATGATGTAACAGTAGC+AGG - chr5_1:51460330-51460349 None:intergenic 40.0%
GAGTTATTCCTGCTAAGAGA+AGG - chr5_1:51460540-51460559 None:intergenic 40.0%
TTAGCAGGAATAACTCTGCA+AGG + chr5_1:51460544-51460563 Msa0735780:CDS 40.0%
! TCTTAATCATCCGGTTCTAG+CGG - chr5_1:51461086-51461105 None:intergenic 40.0%
! TTTGGTTTCTGCAGTGGATA+TGG - chr5_1:51461263-51461282 None:intergenic 40.0%
! TCAACATTTGGTTTCTGCAG+TGG - chr5_1:51461269-51461288 None:intergenic 40.0%
AGCAGAGTTGCTATGGAAAA+GGG + chr5_1:51461320-51461339 Msa0735780:CDS 40.0%
ACAACAACAGGAAGAGATCA+AGG + chr5_1:51461364-51461383 Msa0735780:CDS 40.0%
!! ATATGAGGTTTGTGGTGGAT+TGG - chr5_1:51461501-51461520 None:intergenic 40.0%
GAAGTATATGAGGTTTGTGG+TGG - chr5_1:51461506-51461525 None:intergenic 40.0%
TAAGATCAGCAACAGCTTCA+AGG - chr5_1:51461622-51461641 None:intergenic 40.0%
! TGTTGTGAGTGATGATGTGA+TGG + chr5_1:51461724-51461743 Msa0735780:CDS 40.0%
TATGTGACTGTTAAGAGAGG+TGG + chr5_1:51461764-51461783 Msa0735780:CDS 40.0%
TGAGTAGTGGTCAACAACAA+TGG + chr5_1:51461834-51461853 Msa0735780:CDS 40.0%
! GGGTGTGGAAAATGATTTGG+TGG - chr5_1:51459530-51459549 None:intergenic 45.0%
! TGGGGGTGTGGAAAATGATT+TGG - chr5_1:51459533-51459552 None:intergenic 45.0%
! CTGCTACTTCTTCTTCAGCT+AGG + chr5_1:51459950-51459969 Msa0735780:CDS 45.0%
TCATGGGAGTGATAACAGTG+AGG + chr5_1:51460059-51460078 Msa0735780:CDS 45.0%
!! GTTCTGGTTCAGGTTGTACT+AGG + chr5_1:51460283-51460302 Msa0735780:CDS 45.0%
TTGTACTAGGCCAGGGAAAA+TGG + chr5_1:51460296-51460315 Msa0735780:CDS 45.0%
! AGTAACAATGGTGGAGGAGA+AGG + chr5_1:51460360-51460379 Msa0735780:CDS 45.0%
!! TGGAGGAGAAGGTGTTAAGA+GGG + chr5_1:51460371-51460390 Msa0735780:CDS 45.0%
ATGTCACCTGCTAGAGGAAA+TGG + chr5_1:51460429-51460448 Msa0735780:CDS 45.0%
TGTCACCTGCTAGAGGAAAT+GGG + chr5_1:51460430-51460449 Msa0735780:CDS 45.0%
ATGTCACCTGCAAGAGGAAA+TGG + chr5_1:51460483-51460502 Msa0735780:CDS 45.0%
TGTCACCTGCAAGAGGAAAT+GGG + chr5_1:51460484-51460503 Msa0735780:CDS 45.0%
ACATTCCCATTTCCTCTTGC+AGG - chr5_1:51460492-51460511 None:intergenic 45.0%
ATCAGCAACCTTCTCTTAGC+AGG + chr5_1:51460529-51460548 Msa0735780:CDS 45.0%
TGAGGGACAACACAAGAAAC+AGG + chr5_1:51461291-51461310 Msa0735780:CDS 45.0%
GACAAACAGCAGAGTTGCTA+TGG + chr5_1:51461313-51461332 Msa0735780:CDS 45.0%
CAGCAGAGTTGCTATGGAAA+AGG + chr5_1:51461319-51461338 Msa0735780:CDS 45.0%
! AAGAATGTGGTGATGCCATC+TGG + chr5_1:51461410-51461429 Msa0735780:CDS 45.0%
! AGAATGTGGTGATGCCATCT+GGG + chr5_1:51461411-51461430 Msa0735780:CDS 45.0%
CTGCTTCTTGTAATCCCAGA+TGG - chr5_1:51461428-51461447 None:intergenic 45.0%
ATTGGTTAGAGGTTCGGGAT+TGG - chr5_1:51461483-51461502 None:intergenic 45.0%
!! TGGTGGATTGGTTAGAGGTT+CGG - chr5_1:51461489-51461508 None:intergenic 45.0%
!! GTTTGTGGTGGATTGGTTAG+AGG - chr5_1:51461494-51461513 None:intergenic 45.0%
CAAGCTGGAAGAGAAACAGA+AGG - chr5_1:51461578-51461597 None:intergenic 45.0%
!! CAAGCTTTGTTGAGACAAGC+TGG - chr5_1:51461593-51461612 None:intergenic 45.0%
ATCAGCAACAGCTTCAAGGA+TGG - chr5_1:51461618-51461637 None:intergenic 45.0%
TGTGAGGATCAAGAGTCTTC+AGG + chr5_1:51461794-51461813 Msa0735780:CDS 45.0%
CTGGTGATTCATCGGATTGT+TGG + chr5_1:51461870-51461889 Msa0735780:CDS 45.0%
GAGTGTGATCATCAGCATAG+TGG + chr5_1:51461935-51461954 Msa0735780:CDS 45.0%
TGTGATCATCAGCATAGTGG+TGG + chr5_1:51461938-51461957 Msa0735780:CDS 45.0%
CATCAGCATAGTGGTGGTAT+TGG + chr5_1:51461944-51461963 Msa0735780:CDS 45.0%
!! ATGAGGAGGTAGTGGGAACT+GGG - chr5_1:51459374-51459393 None:intergenic 50.0%
!! TATGAGGAGGTAGTGGGAAC+TGG - chr5_1:51459375-51459394 None:intergenic 50.0%
!! AATAAGGTTGGTGGCGCTGT+TGG + chr5_1:51459841-51459860 Msa0735780:CDS 50.0%
TTTGGTGAATTCCGGTGACG+CGG - chr5_1:51460117-51460136 None:intergenic 50.0%
!! GTTCAGGTTGTACTAGGCCA+GGG + chr5_1:51460289-51460308 Msa0735780:CDS 50.0%
! GGAACAGTCACCATTTTCCC+TGG - chr5_1:51460309-51460328 None:intergenic 50.0%
!! GTGGAGGAGAAGGTGTTAAG+AGG + chr5_1:51460370-51460389 Msa0735780:CDS 50.0%
CTAGCAGGTGACATAGAACG+TGG - chr5_1:51460423-51460442 None:intergenic 50.0%
CGTTCTATGTCACCTGCTAG+AGG + chr5_1:51460423-51460442 Msa0735780:CDS 50.0%
CCATTCCCATTTCCTCTAGC+AGG - chr5_1:51460438-51460457 None:intergenic 50.0%
CCTGCTAGAGGAAATGGGAA+TGG + chr5_1:51460435-51460454 Msa0735780:CDS 50.0%
CGTTCAATGTCACCTGCAAG+AGG + chr5_1:51460477-51460496 Msa0735780:CDS 50.0%
! AATCATCCGGTTCTAGCGGA+AGG - chr5_1:51461082-51461101 None:intergenic 50.0%
! CCTGTTGTTGTTCCTTCGTG+TGG - chr5_1:51461355-51461374 None:intergenic 50.0%
CCACACGAAGGAACAACAAC+AGG + chr5_1:51461352-51461371 Msa0735780:CDS 50.0%
!! GGTGGATTGGTTAGAGGTTC+GGG - chr5_1:51461488-51461507 None:intergenic 50.0%
GAGAGGTGGTTCACTTTGTG+AGG + chr5_1:51461778-51461797 Msa0735780:CDS 50.0%
! CATAGTGGTGGTATTGGACG+TGG + chr5_1:51461950-51461969 Msa0735780:CDS 50.0%
CGAAGAGTGAGTAGATCGCC+TGG + chr5_1:51460213-51460232 Msa0735780:CDS 55.0%
!! GGTTCAGGTTGTACTAGGCC+AGG + chr5_1:51460288-51460307 Msa0735780:CDS 55.0%
GCTCTCGAGATAGCTCGTCT+AGG - chr5_1:51461057-51461076 None:intergenic 55.0%
GGGTGTGAATTGCCACACGA+AGG + chr5_1:51461340-51461359 Msa0735780:CDS 55.0%
! GGAAGAAAGGGGGTGTGAGG+AGG - chr5_1:51459509-51459528 None:intergenic 60.0%
! GGTGGAAGAAAGGGGGTGTG+AGG - chr5_1:51459512-51459531 None:intergenic 60.0%
ATAACCACCGTCCGCGTCAC+CGG + chr5_1:51460103-51460122 Msa0735780:CDS 60.0%
GTGAATTCCGGTGACGCGGA+CGG - chr5_1:51460113-51460132 None:intergenic 60.0%
GAGCCTCCTTCCGCTAGAAC+CGG + chr5_1:51461073-51461092 Msa0735780:intron 60.0%
! CATCCGGTTCTAGCGGAAGG+AGG - chr5_1:51461079-51461098 None:intergenic 60.0%
AATTCCGGTGACGCGGACGG+TGG - chr5_1:51460110-51460129 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 51459251 51462239 51459251 ID=Msa0735780;Name=Msa0735780
chr5_1 mRNA 51459251 51462239 51459251 ID=Msa0735780-mRNA-1;Parent=Msa0735780;Name=Msa0735780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=209|1|1|1|1|1|2|242|657
chr5_1 exon 51459251 51460710 51459251 ID=Msa0735780-mRNA-1:exon:14497;Parent=Msa0735780-mRNA-1
chr5_1 exon 51461275 51462239 51461275 ID=Msa0735780-mRNA-1:exon:14498;Parent=Msa0735780-mRNA-1
chr5_1 five_prime_UTR 51459251 51459459 51459251 ID=Msa0735780-mRNA-1:five_prime_utr;Parent=Msa0735780-mRNA-1
chr5_1 CDS 51459460 51460710 51459460 ID=Msa0735780-mRNA-1:cds;Parent=Msa0735780-mRNA-1
chr5_1 CDS 51461275 51461997 51461275 ID=Msa0735780-mRNA-1:cds;Parent=Msa0735780-mRNA-1
chr5_1 three_prime_UTR 51461998 51462239 51461998 ID=Msa0735780-mRNA-1:three_prime_utr;Parent=Msa0735780-mRNA-1
Gene Sequence

>Msa0735780

ATGGGTGCATGTTTAAGCAAGAAGAAAGCATCATCATCTTCTACTTCCTCCTCACACCCCCTTTCTTCCACCAAATCATTTTCCACACCCCCAATTCAACAAAAACATTCTGATAACAACAATGTTACAGAAACAGAAACTACCCTCAAGAACAACAAAAACAACATCATTGTACAAGAGAAACAACAAGACCCAGAAGTTGTAAAAGAACATGAAGAACCAAAAAAAGAGATTTTTATCATCAAACATAGAAAAAGCCATGATGAAAAAAGAGAGAAAAACTCCATCAAAATCACACCTTTCACTGTTCAACACAATGTTCCATCACAACAAAATGATGGGTTGGTTTCATCTAGTGAAACAGAATCATTGAACAGCAACAATAAGGTTGGTGGCGCTGTTGGTGTGAGAACTTCAAGCTGTACTAAAGAAGAAGTTGATGCAATTTTAATTCAATGTGGAAGATTAAGCAGAAGCTCTTCTGGAAAAGCTGCTACTTCTTCTTCAGCTAGGAAATATTCTGGTTCAAAGAGAAGTTTTGATTTTGATCATTGTGATAACAATGATGCAATTTCAGCTGAGGATGAACAAAAGAGAGTTCATGGGAGTGATAACAGTGAGGAATATGATGGTGTTGCTCGGCATAACCACCGTCCGCGTCACCGGAATTCACCAAAGAAAGCTTCTTCTTCTTCTAATGGAAGGAGAAGAACACCAAGTAGAGAAAGAGATCAACGTTCGAGTAGTAGAGAGCGAAGAGTGAGTAGATCGCCTGGAAGAAGATCATCTGAAAATGGAAGCAACAACAACAATAACAGTAATGGTTCTGGTTCAGGTTGTACTAGGCCAGGGAAAATGGTGACTGTTCCTGCTACTGTTACATCATTGGTTATGGATAAAAGTAACAATGGTGGAGGAGAAGGTGTTAAGAGGGTTATTGTGAAGAGAAATGTTGCATCACCACGTTCTATGTCACCTGCTAGAGGAAATGGGAATGGTCTGAATCAACAACAGCAACGTTCAATGTCACCTGCAAGAGGAAATGGGAATGTAGTGAATCTGAATCAGAATCAGCAACCTTCTCTTAGCAGGAATAACTCTGCAAGGAAAACTGAAGTTTCACCTTATAGAAGAAACCCTCTTAGTGAAGTTGATCCTAATTCACTTGCTTATCCACAATCAAATGCTAATAATGGTGGAAACAAAGTTCAGAACAAAGGCAAAAAGGAAATTGAAGTTGAGACTATTCAGAAACCAAATGTTGAAATGAGGGACAACACAAGAAACAGGACAAACAGCAGAGTTGCTATGGAAAAGGGTGTGAATTGCCACACGAAGGAACAACAACAGGAAGAGATCAAGGTAATGTCTGATAATGCTATTGTGAAGAATGTGGTGATGCCATCTGGGATTACAAGAAGCAGATCATCTAGAAGATTGAGAGACTTCGACACTGCCAATCCCGAACCTCTAACCAATCCACCACAAACCTCATATACTTCATTACTCCTTGAAGACATTCAAAACTTCCATCAAAAGAACACAACACAACCTTCTGTTTCTCTTCCAGCTTGTCTCAACAAAGCTTGTTCCATCCTTGAAGCTGTTGCTGATCTTAATTCCACAACAAGTTCAACTTTCTCTAGGAATGAGTACAACAATGCTGCTGTTCCTGAATCATCATTTGTAGAATCTGAGCTTGTTGTGAGTGATGATGTGATGGAACCAAGTTTACATAAGTATGTGACTGTTAAGAGAGGTGGTTCACTTTGTGAGGATCAAGAGTCTTCAGGAAGTAATAGTTTCACTGTGAGTAGTGGTCAACAACAATGGAACATTTGTTCTTCTGGTGATTCATCGGATTGTTGGAGTTCGAGATTGAATTCAAAAGAGGAGAGTTTGAAAAGAAGAGAGTGTGATCATCAGCATAGTGGTGGTATTGGACGTGGAAGACTTGCTACTGCATCAACATAG

Protein sequence

>Msa0735780

MGACLSKKKASSSSTSSSHPLSSTKSFSTPPIQQKHSDNNNVTETETTLKNNKNNIIVQEKQQDPEVVKEHEEPKKEIFIIKHRKSHDEKREKNSIKITPFTVQHNVPSQQNDGLVSSSETESLNSNNKVGGAVGVRTSSCTKEEVDAILIQCGRLSRSSSGKAATSSSARKYSGSKRSFDFDHCDNNDAISAEDEQKRVHGSDNSEEYDGVARHNHRPRHRNSPKKASSSSNGRRRTPSRERDQRSSSRERRVSRSPGRRSSENGSNNNNNSNGSGSGCTRPGKMVTVPATVTSLVMDKSNNGGGEGVKRVIVKRNVASPRSMSPARGNGNGLNQQQQRSMSPARGNGNVVNLNQNQQPSLSRNNSARKTEVSPYRRNPLSEVDPNSLAYPQSNANNGGNKVQNKGKKEIEVETIQKPNVEMRDNTRNRTNSRVAMEKGVNCHTKEQQQEEIKVMSDNAIVKNVVMPSGITRSRSSRRLRDFDTANPEPLTNPPQTSYTSLLLEDIQNFHQKNTTQPSVSLPACLNKACSILEAVADLNSTTSSTFSRNEYNNAAVPESSFVESELVVSDDVMEPSLHKYVTVKRGGSLCEDQESSGSNSFTVSSGQQQWNICSSGDSSDCWSSRLNSKEESLKRRECDHQHSGGIGRGRLATAST*