Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035120 | XP_024627116.1 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.27e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035120 | sp|O48528|OP163_ARATH | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.08e-70 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035120 | A2Q4T7 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 6.08e-108 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604960 | Msa1035120 | 0.811093 | 8.317592e-51 | -8.615850e-47 |
| Msa0659030 | Msa1035120 | 0.853920 | 1.736384e-61 | -8.615850e-47 |
| Msa0705000 | Msa1035120 | 0.851429 | 8.926697e-61 | -8.615850e-47 |
| Msa0705040 | Msa1035120 | 0.857688 | 1.376487e-62 | -8.615850e-47 |
| Msa0221030 | Msa1035120 | 0.801317 | 9.532038e-49 | -8.615850e-47 |
| Msa1035120 | Msa1036550 | 0.805601 | 1.233713e-49 | -8.615850e-47 |
| Msa1035120 | Msa1227690 | 0.803002 | 4.291780e-49 | -8.615850e-47 |
| Msa1035120 | Msa1316680 | 0.808273 | 3.359240e-50 | -8.615850e-47 |
| Msa1035120 | Msa1349570 | 0.810303 | 1.232791e-50 | -8.615850e-47 |
| Msa1035120 | Msa1369190 | 0.823183 | 1.588541e-53 | -8.615850e-47 |
| Msa1035120 | Msa1442850 | 0.802926 | 4.448393e-49 | -8.615850e-47 |
| Msa1035120 | Msa1462860 | 0.813642 | 2.308850e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035120 | MtrunA17_Chr7g0258441 | 98.113 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.17e-111 | 313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035120 | AT2G42210.2 | 67.532 | 154 | 50 | 0 | 1 | 154 | 15 | 168 | 7.85e-71 | 211 |
| Msa1035120 | AT2G42210.1 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
| Msa1035120 | AT2G42210.3 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
| Msa1035120 | AT2G42210.4 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
| Msa1035120 | AT2G42210.5 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 8.21e-71 | 211 |
Find 71 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATCATCGTACATTTAT+TGG | 0.126510 | 7_1:+70848054 | None:intergenic |
| GTTTAGTTGCTGGCACTATC+TGG | 0.151026 | 7_1:-70849697 | Msa1035120:CDS |
| TTCCCTTCATCATGTTTAAA+AGG | 0.206706 | 7_1:+70848274 | None:intergenic |
| TGTACGATGATGTGTTAATT+TGG | 0.268176 | 7_1:-70848046 | Msa1035120:three_prime_UTR |
| TGAGAGAAGTGTTGCTCTTC+CGG | 0.269686 | 7_1:-70849636 | Msa1035120:CDS |
| CAATCAACTTGAAATGTCTT+TGG | 0.277207 | 7_1:+70848178 | None:intergenic |
| CAAAGACATTTCAAGTTGAT+TGG | 0.283229 | 7_1:-70848177 | Msa1035120:three_prime_UTR |
| ACAACTTACAAAAGAAAATA+TGG | 0.308895 | 7_1:+70848095 | None:intergenic |
| GAGAGAAGTGTTGCTCTTCC+GGG | 0.309934 | 7_1:-70849635 | Msa1035120:CDS |
| TGAAATGTCTTTGGTCATAA+AGG | 0.311002 | 7_1:+70848187 | None:intergenic |
| GTTGCTGGTGCAACTATTCT+TGG | 0.345412 | 7_1:-70849473 | Msa1035120:CDS |
| GCTGTTGGTGGATTTGTTGC+TGG | 0.348409 | 7_1:-70849488 | Msa1035120:CDS |
| TGTGGAGGCCGCTCAGAGTT+TGG | 0.362168 | 7_1:-70850461 | Msa1035120:five_prime_UTR |
| GCAACAACTGGTTTAGTTGC+TGG | 0.371072 | 7_1:-70849707 | Msa1035120:CDS |
| TGGACTATTATGTAAGGTTA+TGG | 0.385105 | 7_1:+70848013 | None:intergenic |
| TTTAGTTGCTGGCACTATCT+GGG | 0.403267 | 7_1:-70849696 | Msa1035120:CDS |
| CATTAGAACTTTGAAGATGA+TGG | 0.404869 | 7_1:-70849609 | Msa1035120:CDS |
| ATGAAGAGGGATCTTGTAAA+TGG | 0.414469 | 7_1:-70849512 | Msa1035120:CDS |
| TTGGTTTGCAGAGATTATAA+TGG | 0.415470 | 7_1:-70849792 | Msa1035120:intron |
| AGTCTACATAGGGGTGGAAC+AGG | 0.418652 | 7_1:-70849552 | Msa1035120:CDS |
| TAATAGTCCACATTCTTCCT+TGG | 0.420968 | 7_1:-70848000 | Msa1035120:three_prime_UTR |
| ATTCCAACTCAACAAACAAC+TGG | 0.454172 | 7_1:+70848129 | None:intergenic |
| AATAGTCCACATTCTTCCTT+GGG | 0.456801 | 7_1:-70847999 | Msa1035120:three_prime_UTR |
| TGTGAAAGCCAATGCTGATC+CGG | 0.457987 | 7_1:+70848324 | None:intergenic |
| CTTGTAAATGGTGCTGTTGG+TGG | 0.465052 | 7_1:-70849500 | Msa1035120:CDS |
| GAGCCAGTTGTTTGTTGAGT+TGG | 0.465517 | 7_1:-70848132 | Msa1035120:three_prime_UTR |
| ATCTCAACTGCAATTTCTGC+CGG | 0.488258 | 7_1:-70848343 | Msa1035120:CDS |
| AATTTCTGCCGGATCAGCAT+TGG | 0.497080 | 7_1:-70848332 | Msa1035120:CDS |
| GACTCCTCCTATGGCGGCAA+AGG | 0.503480 | 7_1:+70849571 | None:intergenic |
| AACAGGTGGTGCAGAACTAC+AGG | 0.509492 | 7_1:-70849535 | Msa1035120:CDS |
| TTGAAGATGATGGGTGGCTA+TGG | 0.511278 | 7_1:-70849599 | Msa1035120:CDS |
| ATTAGAACTTTGAAGATGAT+GGG | 0.515393 | 7_1:-70849608 | Msa1035120:CDS |
| ATCTGAAGTCTTGATAAAGA+AGG | 0.521892 | 7_1:-70847878 | Msa1035120:three_prime_UTR |
| TTCATCATGTTTAAAAGGCG+TGG | 0.528434 | 7_1:+70848279 | None:intergenic |
| AGAATGTGGACTATTATGTA+AGG | 0.529502 | 7_1:+70848007 | None:intergenic |
| GGAGCGACCTTTGCCGCCAT+AGG | 0.530743 | 7_1:-70849578 | Msa1035120:CDS |
| TTTGCAAGCAAGAGTAGTAT+CGG | 0.538226 | 7_1:-70850507 | Msa1035120:five_prime_UTR |
| ATGAATACTATACATGAAGC+TGG | 0.538905 | 7_1:-70847968 | Msa1035120:three_prime_UTR |
| ACGTAGGTACTTCGAGGATG+AGG | 0.541797 | 7_1:-70849759 | Msa1035120:CDS |
| GCGACCTTTGCCGCCATAGG+AGG | 0.543885 | 7_1:-70849575 | Msa1035120:CDS |
| TTAGTTGCTGGCACTATCTG+GGG | 0.550686 | 7_1:-70849695 | Msa1035120:CDS |
| CCATAGGAGGAGTCTACATA+GGG | 0.550718 | 7_1:-70849562 | Msa1035120:CDS |
| AGCTGGCGTAGTAGAGAACT+AGG | 0.553964 | 7_1:-70847951 | Msa1035120:three_prime_UTR |
| CCCTATGTAGACTCCTCCTA+TGG | 0.554940 | 7_1:+70849562 | None:intergenic |
| GGGGTACTGTAGTTGCCACC+TGG | 0.555518 | 7_1:-70849676 | Msa1035120:CDS |
| TTTGTTGAGTTGGAATTACA+TGG | 0.555647 | 7_1:-70848122 | Msa1035120:three_prime_UTR |
| GATCTTGTAAATGGTGCTGT+TGG | 0.564385 | 7_1:-70849503 | Msa1035120:CDS |
| AGAGAAGTGTTGCTCTTCCG+GGG | 0.565741 | 7_1:-70849634 | Msa1035120:CDS |
| TTCAAAGTTCTAATGAGCCC+CGG | 0.577416 | 7_1:+70849617 | None:intergenic |
| TCTGAAGTCTTGATAAAGAA+GGG | 0.580048 | 7_1:-70847877 | Msa1035120:three_prime_UTR |
| AGCAGAACGTAGGTACTTCG+AGG | 0.590571 | 7_1:-70849765 | Msa1035120:CDS |
| AACAACTGGCTCAACAAAGA+GGG | 0.596831 | 7_1:+70848143 | None:intergenic |
| AAACAACTGGCTCAACAAAG+AGG | 0.605443 | 7_1:+70848142 | None:intergenic |
| CAGAAGAATTCTGCGAAGTG+TGG | 0.606590 | 7_1:-70850479 | Msa1035120:five_prime_UTR |
| ATTCATCCCAAGGAAGAATG+TGG | 0.607637 | 7_1:+70847993 | None:intergenic |
| TGCAGAACTACAGGATGAAG+AGG | 0.608336 | 7_1:-70849526 | Msa1035120:CDS |
| AAGAATTCTGCGAAGTGTGG+AGG | 0.620146 | 7_1:-70850476 | Msa1035120:five_prime_UTR |
| CTACATAGGGGTGGAACAGG+TGG | 0.622608 | 7_1:-70849549 | Msa1035120:CDS |
| GTATTCATCAATTCATCCCA+AGG | 0.623479 | 7_1:+70847983 | None:intergenic |
| GCAACTATTCTTGGTTACAG+AGG | 0.629555 | 7_1:-70849464 | Msa1035120:intron |
| AGGAGGAGTCTACATAGGGG+TGG | 0.649086 | 7_1:-70849558 | Msa1035120:CDS |
| AACACGAGGAACATCATACC+AGG | 0.650917 | 7_1:+70849658 | None:intergenic |
| GCTGGCGTAGTAGAGAACTA+GGG | 0.661604 | 7_1:-70847950 | Msa1035120:three_prime_UTR |
| TATGTAGACTCCTCCTATGG+CGG | 0.661958 | 7_1:+70849565 | None:intergenic |
| GCAGAACTACAGGATGAAGA+GGG | 0.663987 | 7_1:-70849525 | Msa1035120:CDS |
| AGAACTTTGAAGATGATGGG+TGG | 0.665092 | 7_1:-70849605 | Msa1035120:CDS |
| CTACAACTCCAAACTCTGAG+CGG | 0.696181 | 7_1:+70850453 | None:intergenic |
| GCAACACTTCTCTCAACACG+AGG | 0.700649 | 7_1:+70849644 | None:intergenic |
| TAATGGACTCAGCAGAACGT+AGG | 0.713597 | 7_1:-70849775 | Msa1035120:CDS |
| ACGAGGAACATCATACCAGG+TGG | 0.746444 | 7_1:+70849661 | None:intergenic |
| CATAGGAGGAGTCTACATAG+GGG | 0.784446 | 7_1:-70849561 | Msa1035120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAAAATCTTCATATTT+GGG | - | chr7_1:70848244-70848263 | Msa1035120:CDS | 15.0% |
| !! | ATAAAATGAAAACCCTAAAA+AGG | + | chr7_1:70848022-70848041 | None:intergenic | 20.0% |
| !! | AAAATGTGGTATAGTTAAAA+GGG | + | chr7_1:70848048-70848067 | None:intergenic | 20.0% |
| !! | AAAAATGTGGTATAGTTAAA+AGG | + | chr7_1:70848049-70848068 | None:intergenic | 20.0% |
| !! | CAAAAATCCAAAAATCTTAA+AGG | + | chr7_1:70848202-70848221 | None:intergenic | 20.0% |
| !!! | CTTTAAGATTTTTGGATTTT+TGG | - | chr7_1:70848200-70848219 | Msa1035120:three_prime_UTR | 20.0% |
| !! | CATATCAAAATCTTCATATT+TGG | - | chr7_1:70848243-70848262 | Msa1035120:CDS | 20.0% |
| !! | AATTCTCTGATAATTATATG+AGG | + | chr7_1:70848945-70848964 | None:intergenic | 20.0% |
| !! | ATTGTCAAAATAAAAAAGTC+AGG | + | chr7_1:70849674-70849693 | None:intergenic | 20.0% |
| !! | TTTCTTCAGTTATTTGTTTA+AGG | - | chr7_1:70849917-70849936 | Msa1035120:intron | 20.0% |
| !! | AAAAATTATGCATTGTTACT+GGG | + | chr7_1:70850157-70850176 | None:intergenic | 20.0% |
| !! | TAAAAATTATGCATTGTTAC+TGG | + | chr7_1:70850158-70850177 | None:intergenic | 20.0% |
| !! | ACAACTTACAAAAGAAAATA+TGG | + | chr7_1:70850282-70850301 | None:intergenic | 20.0% |
| !! | TTTCTCTATTCACCTTTTTA+GGG | - | chr7_1:70848007-70848026 | Msa1035120:three_prime_UTR | 25.0% |
| ! | AAATGTGGTATAGTTAAAAG+GGG | + | chr7_1:70848047-70848066 | None:intergenic | 25.0% |
| ! | AAGAAGATTGTTGAAAAATG+TGG | + | chr7_1:70848062-70848081 | None:intergenic | 25.0% |
| ! | TTGAACAATGAAATTGATAG+TGG | + | chr7_1:70848153-70848172 | None:intergenic | 25.0% |
| !!! | TTTTCCACCTTTAAGATTTT+TGG | - | chr7_1:70848192-70848211 | Msa1035120:three_prime_UTR | 25.0% |
| ! | AAATCCAAAAATCTTAAAGG+TGG | + | chr7_1:70848199-70848218 | None:intergenic | 25.0% |
| ! | ACGATAATGTTACAAAACAA+TGG | + | chr7_1:70848484-70848503 | None:intergenic | 25.0% |
| ! | ACATGAGTAATTAGTAAAAG+TGG | - | chr7_1:70848507-70848526 | Msa1035120:intron | 25.0% |
| !! | ATCACTCACAAAAACTTTTA+AGG | - | chr7_1:70848642-70848661 | Msa1035120:intron | 25.0% |
| !! | TCACTCACAAAAACTTTTAA+GGG | - | chr7_1:70848643-70848662 | Msa1035120:intron | 25.0% |
| !! | ATTAGAACTTTGAAGATGAT+GGG | - | chr7_1:70848766-70848785 | Msa1035120:intron | 25.0% |
| ! | CTGATAATTATATGAGGAAA+GGG | + | chr7_1:70848939-70848958 | None:intergenic | 25.0% |
| ! | TCTGATAATTATATGAGGAA+AGG | + | chr7_1:70848940-70848959 | None:intergenic | 25.0% |
| ! | TCCATAATATAATTCAGAAG+TGG | - | chr7_1:70849072-70849091 | Msa1035120:intron | 25.0% |
| ! | ACCACTTCTGAATTATATTA+TGG | + | chr7_1:70849076-70849095 | None:intergenic | 25.0% |
| ! | CAATAAAGAGAAAGAAATGA+AGG | + | chr7_1:70849427-70849446 | None:intergenic | 25.0% |
| !! | TAGTTCTATTGATATATTCC+CGG | - | chr7_1:70849456-70849475 | Msa1035120:intron | 25.0% |
| ! | CTACTAAGGTAATTATAGAA+TGG | + | chr7_1:70849486-70849505 | None:intergenic | 25.0% |
| ! | AAGACTTCACAAAATGAATA+CGG | + | chr7_1:70849593-70849612 | None:intergenic | 25.0% |
| !! | TGCTCTTTTATTATCAGTTA+AGG | - | chr7_1:70849697-70849716 | Msa1035120:CDS | 25.0% |
| ! | TAACACACAAGAAACATTTA+GGG | + | chr7_1:70849859-70849878 | None:intergenic | 25.0% |
| ! | TTAACACACAAGAAACATTT+AGG | + | chr7_1:70849860-70849879 | None:intergenic | 25.0% |
| ! | GTTTCTCTATTCACCTTTTT+AGG | - | chr7_1:70848006-70848025 | Msa1035120:three_prime_UTR | 30.0% |
| AATGTGGTATAGTTAAAAGG+GGG | + | chr7_1:70848046-70848065 | None:intergenic | 30.0% | |
| ACATAAGCCGAATTGTAAAA+CGG | + | chr7_1:70848118-70848137 | None:intergenic | 30.0% | |
| !!! | ATTCGGCTTATGTTATTTTC+TGG | - | chr7_1:70848125-70848144 | Msa1035120:three_prime_UTR | 30.0% |
| CAATAAGGTGCAACAAATTA+AGG | + | chr7_1:70848277-70848296 | None:intergenic | 30.0% | |
| ACATAAGTGCTTATGCAATA+AGG | + | chr7_1:70848292-70848311 | None:intergenic | 30.0% | |
| TACAAAACAATGGACATGTT+TGG | + | chr7_1:70848474-70848493 | None:intergenic | 30.0% | |
| ! | TTTAAGCCTTCTATTCCTTT+TGG | - | chr7_1:70848549-70848568 | Msa1035120:intron | 30.0% |
| ! | TTAAGCCTTCTATTCCTTTT+GGG | - | chr7_1:70848550-70848569 | Msa1035120:intron | 30.0% |
| AAATTCCCAAAAGGAATAGA+AGG | + | chr7_1:70848558-70848577 | None:intergenic | 30.0% | |
| !! | TCCTTTTGGGAATTTTTTGT+TGG | - | chr7_1:70848563-70848582 | Msa1035120:intron | 30.0% |
| ACCAACAAAAAATTCCCAAA+AGG | + | chr7_1:70848567-70848586 | None:intergenic | 30.0% | |
| !! | TTGGTTTGCAGAGATTATAA+TGG | - | chr7_1:70848582-70848601 | Msa1035120:intron | 30.0% |
| ! | CATTAGAACTTTGAAGATGA+TGG | - | chr7_1:70848765-70848784 | Msa1035120:intron | 30.0% |
| TAGTAGATAAGCATCATATG+AGG | - | chr7_1:70849095-70849114 | Msa1035120:intron | 30.0% | |
| TCGAAAGGAAGAAAAAACAA+TGG | + | chr7_1:70849132-70849151 | None:intergenic | 30.0% | |
| AATGAGTTAATCATGTCGAA+AGG | + | chr7_1:70849147-70849166 | None:intergenic | 30.0% | |
| TCATTGTGCTAAATTGTTAC+TGG | - | chr7_1:70849162-70849181 | Msa1035120:intron | 30.0% | |
| AGCATTATGGAAATAACTCT+GGG | + | chr7_1:70849319-70849338 | None:intergenic | 30.0% | |
| AAGCATTATGGAAATAACTC+TGG | + | chr7_1:70849320-70849339 | None:intergenic | 30.0% | |
| ! | ATAATGCTTTTGTGAAACAC+CGG | - | chr7_1:70849331-70849350 | Msa1035120:intron | 30.0% |
| AGAATCTGTTAGAAGTTCAT+TGG | + | chr7_1:70849393-70849412 | None:intergenic | 30.0% | |
| AGTTCTATTGATATATTCCC+GGG | - | chr7_1:70849457-70849476 | Msa1035120:intron | 30.0% | |
| TAATTATAGAATGGTTTCCC+GGG | + | chr7_1:70849477-70849496 | None:intergenic | 30.0% | |
| GTAATTATAGAATGGTTTCC+CGG | + | chr7_1:70849478-70849497 | None:intergenic | 30.0% | |
| ! | TGTCTGTGTTTCTATGTATT+GGG | - | chr7_1:70849545-70849564 | Msa1035120:CDS | 30.0% |
| ATAAAATCTACAAGCCTTCT+AGG | + | chr7_1:70849646-70849665 | None:intergenic | 30.0% | |
| ! | TAGAAGGCTTGTAGATTTTA+TGG | - | chr7_1:70849645-70849664 | Msa1035120:CDS | 30.0% |
| ACAAAATACCTCCAAATACA+AGG | + | chr7_1:70849725-70849744 | None:intergenic | 30.0% | |
| TATGAGTTATGTGATTTCAG+TGG | - | chr7_1:70849759-70849778 | Msa1035120:CDS | 30.0% | |
| !! | ATAGATGGACTAAAGTACAA+TGG | + | chr7_1:70849821-70849840 | None:intergenic | 30.0% |
| TACTTTAGTCCATCTATTCA+AGG | - | chr7_1:70849824-70849843 | Msa1035120:intron | 30.0% | |
| AACACACAAGAAACATTTAG+GGG | + | chr7_1:70849858-70849877 | None:intergenic | 30.0% | |
| TTTGTTTAAGGAGCTCTATA+TGG | - | chr7_1:70849929-70849948 | Msa1035120:intron | 30.0% | |
| TAACAAGCTTTGCATAATGT+CGG | - | chr7_1:70849989-70850008 | Msa1035120:intron | 30.0% | |
| TTCCCTTCATCATGTTTAAA+AGG | + | chr7_1:70850103-70850122 | None:intergenic | 30.0% | |
| ! | TTTTAAACATGATGAAGGGA+AGG | - | chr7_1:70850102-70850121 | Msa1035120:intron | 30.0% |
| TGAAATGTCTTTGGTCATAA+AGG | + | chr7_1:70850190-70850209 | None:intergenic | 30.0% | |
| CAATCAACTTGAAATGTCTT+TGG | + | chr7_1:70850199-70850218 | None:intergenic | 30.0% | |
| !! | CAAAGACATTTCAAGTTGAT+TGG | - | chr7_1:70850197-70850216 | Msa1035120:intron | 30.0% |
| !! | TTTGTTGAGTTGGAATTACA+TGG | - | chr7_1:70850252-70850271 | Msa1035120:intron | 30.0% |
| ACACATCATCGTACATTTAT+TGG | + | chr7_1:70850323-70850342 | None:intergenic | 30.0% | |
| TGTACGATGATGTGTTAATT+TGG | - | chr7_1:70850328-70850347 | Msa1035120:intron | 30.0% | |
| TGGACTATTATGTAAGGTTA+TGG | + | chr7_1:70850364-70850383 | None:intergenic | 30.0% | |
| ! | AGAATGTGGACTATTATGTA+AGG | + | chr7_1:70850370-70850389 | None:intergenic | 30.0% |
| ATGAATACTATACATGAAGC+TGG | - | chr7_1:70850406-70850425 | Msa1035120:intron | 30.0% | |
| ! | ATCTGAAGTCTTGATAAAGA+AGG | - | chr7_1:70850496-70850515 | Msa1035120:five_prime_UTR | 30.0% |
| ! | TCTGAAGTCTTGATAAAGAA+GGG | - | chr7_1:70850497-70850516 | Msa1035120:five_prime_UTR | 30.0% |
| TTTGCAAGCAAGAGTAGTAT+CGG | - | chr7_1:70847867-70847886 | Msa1035120:three_prime_UTR | 35.0% | |
| ! | CTTTTCGATTTCTCTCTTTC+AGG | - | chr7_1:70847944-70847963 | Msa1035120:three_prime_UTR | 35.0% |
| ! | CTATGCTCCGTTTTACAATT+CGG | - | chr7_1:70848108-70848127 | Msa1035120:three_prime_UTR | 35.0% |
| TCTTAAAGGTGGAAAAACTG+TGG | + | chr7_1:70848188-70848207 | None:intergenic | 35.0% | |
| AAGCACTATTGTGTCTGTTT+AGG | + | chr7_1:70848421-70848440 | None:intergenic | 35.0% | |
| GAATAGAAGGCTTAAACACT+CGG | + | chr7_1:70848545-70848564 | None:intergenic | 35.0% | |
| ATGAAGAGGGATCTTGTAAA+TGG | - | chr7_1:70848862-70848881 | Msa1035120:intron | 35.0% | |
| AGATAAGCATCATATGAGGA+AGG | - | chr7_1:70849099-70849118 | Msa1035120:intron | 35.0% | |
| ACACTGCAGCAATGAAATAT+AGG | + | chr7_1:70849276-70849295 | None:intergenic | 35.0% | |
| !! | GGTGTTTCACAAAAGCATTA+TGG | + | chr7_1:70849332-70849351 | None:intergenic | 35.0% |
| GCAGTGTATATGATAGAATC+CGG | + | chr7_1:70849353-70849372 | None:intergenic | 35.0% | |
| TTACCTTAGTAGTGCATCTT+TGG | - | chr7_1:70849494-70849513 | Msa1035120:CDS | 35.0% | |
| AGCAAGAAATTATCACCTTG+TGG | - | chr7_1:70849519-70849538 | Msa1035120:CDS | 35.0% | |
| ! | GTGTCTGTGTTTCTATGTAT+TGG | - | chr7_1:70849544-70849563 | Msa1035120:CDS | 35.0% |
| CTTCACAAAATGAATACGGA+TGG | + | chr7_1:70849589-70849608 | None:intergenic | 35.0% | |
| ! | GTGAAGTCTTATGTCGTTTA+AGG | - | chr7_1:70849603-70849622 | Msa1035120:CDS | 35.0% |
| CAGTTAAGGATCCTTGTATT+TGG | - | chr7_1:70849711-70849730 | Msa1035120:CDS | 35.0% | |
| TTAAGGATCCTTGTATTTGG+AGG | - | chr7_1:70849714-70849733 | Msa1035120:CDS | 35.0% | |
| TTTGTAGCAACTAGCAAGAA+AGG | + | chr7_1:70849792-70849811 | None:intergenic | 35.0% | |
| ACAAGAAACATTTAGGGGTT+AGG | + | chr7_1:70849853-70849872 | None:intergenic | 35.0% | |
| ! | CATAATGTCGGTTATACTGT+AGG | - | chr7_1:70850001-70850020 | Msa1035120:intron | 35.0% |
| !!! | ATCTGCAGTCATTGATTTTG+CGG | - | chr7_1:70850072-70850091 | Msa1035120:intron | 35.0% |
| TTCATCATGTTTAAAAGGCG+TGG | + | chr7_1:70850098-70850117 | None:intergenic | 35.0% | |
| ! | ACGCCTTTTAAACATGATGA+AGG | - | chr7_1:70850097-70850116 | Msa1035120:intron | 35.0% |
| ! | CGCCTTTTAAACATGATGAA+GGG | - | chr7_1:70850098-70850117 | Msa1035120:intron | 35.0% |
| ATTCCAACTCAACAAACAAC+TGG | + | chr7_1:70850248-70850267 | None:intergenic | 35.0% | |
| TAATAGTCCACATTCTTCCT+TGG | - | chr7_1:70850374-70850393 | Msa1035120:intron | 35.0% | |
| AATAGTCCACATTCTTCCTT+GGG | - | chr7_1:70850375-70850394 | Msa1035120:intron | 35.0% | |
| GTATTCATCAATTCATCCCA+AGG | + | chr7_1:70850394-70850413 | None:intergenic | 35.0% | |
| AGGTGGAAAAACTGTGGTAT+TGG | + | chr7_1:70848182-70848201 | None:intergenic | 40.0% | |
| !! | ACTTTTAAGGGTGCAACAAC+TGG | - | chr7_1:70848655-70848674 | Msa1035120:intron | 40.0% |
| TTTAGTTGCTGGCACTATCT+GGG | - | chr7_1:70848678-70848697 | Msa1035120:intron | 40.0% | |
| ! | TTCAAAGTTCTAATGAGCCC+CGG | + | chr7_1:70848760-70848779 | None:intergenic | 40.0% |
| !! | AGAACTTTGAAGATGATGGG+TGG | - | chr7_1:70848769-70848788 | Msa1035120:intron | 40.0% |
| !! | GATCTTGTAAATGGTGCTGT+TGG | - | chr7_1:70848871-70848890 | Msa1035120:intron | 40.0% |
| GCAACTATTCTTGGTTACAG+AGG | - | chr7_1:70848910-70848929 | Msa1035120:intron | 40.0% | |
| TTGCTGCAGTGTTCTGTAAT+TGG | - | chr7_1:70849284-70849303 | Msa1035120:intron | 40.0% | |
| TGCTGCAGTGTTCTGTAATT+GGG | - | chr7_1:70849285-70849304 | Msa1035120:intron | 40.0% | |
| TAGCCAAAGATGCACTACTA+AGG | + | chr7_1:70849500-70849519 | None:intergenic | 40.0% | |
| ! | CTGTGTTTCTATGTATTGGG+AGG | - | chr7_1:70849548-70849567 | Msa1035120:CDS | 40.0% |
| ! | TGTTTCTATGTATTGGGAGG+AGG | - | chr7_1:70849551-70849570 | Msa1035120:CDS | 40.0% |
| TCATAGAACCTCAACCTAGA+AGG | - | chr7_1:70849629-70849648 | Msa1035120:CDS | 40.0% | |
| TAACTCATAGCTTCTCCACT+GGG | + | chr7_1:70849748-70849767 | None:intergenic | 40.0% | |
| ATAACTCATAGCTTCTCCAC+TGG | + | chr7_1:70849749-70849768 | None:intergenic | 40.0% | |
| GTTAGGCATCCTTGAATAGA+TGG | + | chr7_1:70849836-70849855 | None:intergenic | 40.0% | |
| ! | ATGTCGGTTATACTGTAGGA+AGG | - | chr7_1:70850005-70850024 | Msa1035120:intron | 40.0% |
| ATCTCAACTGCAATTTCTGC+CGG | - | chr7_1:70850031-70850050 | Msa1035120:intron | 40.0% | |
| ! | AACAACTGGCTCAACAAAGA+GGG | + | chr7_1:70850234-70850253 | None:intergenic | 40.0% |
| ! | AAACAACTGGCTCAACAAAG+AGG | + | chr7_1:70850235-70850254 | None:intergenic | 40.0% |
| ATTCATCCCAAGGAAGAATG+TGG | + | chr7_1:70850384-70850403 | None:intergenic | 40.0% | |
| CAGAAGAATTCTGCGAAGTG+TGG | - | chr7_1:70847895-70847914 | Msa1035120:three_prime_UTR | 45.0% | |
| AAGAATTCTGCGAAGTGTGG+AGG | - | chr7_1:70847898-70847917 | Msa1035120:three_prime_UTR | 45.0% | |
| CTACAACTCCAAACTCTGAG+CGG | + | chr7_1:70847924-70847943 | None:intergenic | 45.0% | |
| !! | TAATGGACTCAGCAGAACGT+AGG | - | chr7_1:70848599-70848618 | Msa1035120:intron | 45.0% |
| ! | GCAACAACTGGTTTAGTTGC+TGG | - | chr7_1:70848667-70848686 | Msa1035120:intron | 45.0% |
| GTTTAGTTGCTGGCACTATC+TGG | - | chr7_1:70848677-70848696 | Msa1035120:intron | 45.0% | |
| TTAGTTGCTGGCACTATCTG+GGG | - | chr7_1:70848679-70848698 | Msa1035120:intron | 45.0% | |
| AACACGAGGAACATCATACC+AGG | + | chr7_1:70848719-70848738 | None:intergenic | 45.0% | |
| !! | TGAGAGAAGTGTTGCTCTTC+CGG | - | chr7_1:70848738-70848757 | Msa1035120:intron | 45.0% |
| !! | TTGAAGATGATGGGTGGCTA+TGG | - | chr7_1:70848775-70848794 | Msa1035120:intron | 45.0% |
| TATGTAGACTCCTCCTATGG+CGG | + | chr7_1:70848812-70848831 | None:intergenic | 45.0% | |
| CCATAGGAGGAGTCTACATA+GGG | - | chr7_1:70848812-70848831 | Msa1035120:intron | 45.0% | |
| CATAGGAGGAGTCTACATAG+GGG | - | chr7_1:70848813-70848832 | Msa1035120:intron | 45.0% | |
| TGCAGAACTACAGGATGAAG+AGG | - | chr7_1:70848848-70848867 | Msa1035120:intron | 45.0% | |
| GCAGAACTACAGGATGAAGA+GGG | - | chr7_1:70848849-70848868 | Msa1035120:intron | 45.0% | |
| !! | CTTGTAAATGGTGCTGTTGG+TGG | - | chr7_1:70848874-70848893 | Msa1035120:intron | 45.0% |
| GTTGCTGGTGCAACTATTCT+TGG | - | chr7_1:70848901-70848920 | Msa1035120:intron | 45.0% | |
| GAAACACAGACACAACCACA+AGG | + | chr7_1:70849537-70849556 | None:intergenic | 45.0% | |
| TCTACAAGCCTTCTAGGTTG+AGG | + | chr7_1:70849640-70849659 | None:intergenic | 45.0% | |
| !!! | TTGGAGGTATTTTGTCCCAG+TGG | - | chr7_1:70849730-70849749 | Msa1035120:CDS | 45.0% |
| TGAAGAAACTCGCAGCATGA+GGG | + | chr7_1:70849905-70849924 | None:intergenic | 45.0% | |
| AATTTCTGCCGGATCAGCAT+TGG | - | chr7_1:70850042-70850061 | Msa1035120:intron | 45.0% | |
| TGTGAAAGCCAATGCTGATC+CGG | + | chr7_1:70850053-70850072 | None:intergenic | 45.0% | |
| ! | GAGCCAGTTGTTTGTTGAGT+TGG | - | chr7_1:70850242-70850261 | Msa1035120:intron | 45.0% |
| AGCAGAACGTAGGTACTTCG+AGG | - | chr7_1:70848609-70848628 | Msa1035120:intron | 50.0% | |
| ACGTAGGTACTTCGAGGATG+AGG | - | chr7_1:70848615-70848634 | Msa1035120:intron | 50.0% | |
| ACGAGGAACATCATACCAGG+TGG | + | chr7_1:70848716-70848735 | None:intergenic | 50.0% | |
| GCAACACTTCTCTCAACACG+AGG | + | chr7_1:70848733-70848752 | None:intergenic | 50.0% | |
| !! | GAGAGAAGTGTTGCTCTTCC+GGG | - | chr7_1:70848739-70848758 | Msa1035120:intron | 50.0% |
| !! | AGAGAAGTGTTGCTCTTCCG+GGG | - | chr7_1:70848740-70848759 | Msa1035120:intron | 50.0% |
| GCCATAGGAGGAGTCTACAT+AGG | - | chr7_1:70848811-70848830 | Msa1035120:intron | 50.0% | |
| CCCTATGTAGACTCCTCCTA+TGG | + | chr7_1:70848815-70848834 | None:intergenic | 50.0% | |
| AGTCTACATAGGGGTGGAAC+AGG | - | chr7_1:70848822-70848841 | Msa1035120:intron | 50.0% | |
| AACAGGTGGTGCAGAACTAC+AGG | - | chr7_1:70848839-70848858 | Msa1035120:intron | 50.0% | |
| !! | GCTGTTGGTGGATTTGTTGC+TGG | - | chr7_1:70848886-70848905 | Msa1035120:intron | 50.0% |
| CTGAAGAAACTCGCAGCATG+AGG | + | chr7_1:70849906-70849925 | None:intergenic | 50.0% | |
| AGCTGGCGTAGTAGAGAACT+AGG | - | chr7_1:70850423-70850442 | Msa1035120:intron | 50.0% | |
| GCTGGCGTAGTAGAGAACTA+GGG | - | chr7_1:70850424-70850443 | Msa1035120:intron | 50.0% | |
| AGGAGGAGTCTACATAGGGG+TGG | - | chr7_1:70848816-70848835 | Msa1035120:intron | 55.0% | |
| CTACATAGGGGTGGAACAGG+TGG | - | chr7_1:70848825-70848844 | Msa1035120:intron | 55.0% | |
| TGTGGAGGCCGCTCAGAGTT+TGG | - | chr7_1:70847913-70847932 | Msa1035120:three_prime_UTR | 60.0% | |
| !! | GGGGTACTGTAGTTGCCACC+TGG | - | chr7_1:70848698-70848717 | Msa1035120:intron | 60.0% |
| GACTCCTCCTATGGCGGCAA+AGG | + | chr7_1:70848806-70848825 | None:intergenic | 60.0% | |
| GGAGCGACCTTTGCCGCCAT+AGG | - | chr7_1:70848796-70848815 | Msa1035120:intron | 65.0% | |
| GCGACCTTTGCCGCCATAGG+AGG | - | chr7_1:70848799-70848818 | Msa1035120:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 70847863 | 70850533 | 70847863 | ID=Msa1035120;Name=Msa1035120 |
| chr7_1 | mRNA | 70847863 | 70850533 | 70847863 | ID=Msa1035120-mRNA-1;Parent=Msa1035120;Name=Msa1035120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|0.5|0.33|3|362|159 |
| chr7_1 | exon | 70847863 | 70848373 | 70847863 | ID=Msa1035120-mRNA-1:exon:17024;Parent=Msa1035120-mRNA-1 |
| chr7_1 | exon | 70849465 | 70849803 | 70849465 | ID=Msa1035120-mRNA-1:exon:17023;Parent=Msa1035120-mRNA-1 |
| chr7_1 | exon | 70850431 | 70850533 | 70850431 | ID=Msa1035120-mRNA-1:exon:17022;Parent=Msa1035120-mRNA-1 |
| chr7_1 | five_prime_UTR | 70850431 | 70850533 | 70850431 | ID=Msa1035120-mRNA-1:five_prime_utr;Parent=Msa1035120-mRNA-1 |
| chr7_1 | five_prime_UTR | 70849796 | 70849803 | 70849796 | ID=Msa1035120-mRNA-1:five_prime_utr;Parent=Msa1035120-mRNA-1 |
| chr7_1 | CDS | 70849465 | 70849795 | 70849465 | ID=Msa1035120-mRNA-1:cds;Parent=Msa1035120-mRNA-1 |
| chr7_1 | CDS | 70848225 | 70848373 | 70848225 | ID=Msa1035120-mRNA-1:cds;Parent=Msa1035120-mRNA-1 |
| chr7_1 | three_prime_UTR | 70847863 | 70848224 | 70847863 | ID=Msa1035120-mRNA-1:three_prime_utr;Parent=Msa1035120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
