AlfalfaGEDB | Msa1036550

M. sativa cultivar zhongmu-4 / Msa1036550

KEGG: K03105
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904
PFAM: PF01922.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036550	XP_013449864.1	98.551	138	2	0	14	151	1	138	3.71e-96	283

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036550	sp\|P49964\|SRP19_ORYSJ	72.414	116	32	0	20	135	9	124	3.22e-61	187

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036550	A0A072U2F6	98.551	138	2	0	14	151	1	138	1.77e-96	283

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006880	Msa1036550	0.840598	7.897417e-58	-8.615850e-47
Msa0055150	Msa1036550	0.819496	1.126623e-52	-8.615850e-47
Msa0061970	Msa1036550	0.803983	2.686388e-49	-8.615850e-47
Msa0097580	Msa1036550	0.813199	2.889018e-51	-8.615850e-47
Msa0618310	Msa1036550	0.804880	1.746715e-49	-8.615850e-47
Msa0618930	Msa1036550	0.801697	7.968162e-49	-8.615850e-47
Msa0633570	Msa1036550	0.828481	8.778430e-55	-8.615850e-47
Msa0659030	Msa1036550	0.808610	2.845431e-50	-8.615850e-47
Msa0666230	Msa1036550	0.805049	1.610555e-49	-8.615850e-47
Msa0705000	Msa1036550	0.830525	2.796357e-55	-8.615850e-47
Msa0705040	Msa1036550	0.827238	1.747224e-54	-8.615850e-47
Msa0706500	Msa1036550	0.808861	2.515237e-50	-8.615850e-47
Msa0785130	Msa1036550	0.805311	1.419503e-49	-8.615850e-47
Msa0806920	Msa1036550	0.809075	2.263360e-50	-8.615850e-47
Msa0131450	Msa1036550	0.819214	1.306385e-52	-8.615850e-47
Msa0165440	Msa1036550	0.806958	6.387909e-50	-8.615850e-47
Msa0165950	Msa1036550	0.836804	7.551107e-57	-8.615850e-47
Msa0166750	Msa1036550	0.844492	7.309829e-59	-8.615850e-47
Msa0174770	Msa1036550	0.808177	3.520171e-50	-8.615850e-47
Msa0181610	Msa1036550	0.801032	1.090226e-48	-8.615850e-47
Msa0185350	Msa1036550	0.800090	1.696336e-48	-8.615850e-47
Msa0224560	Msa1036550	0.811976	5.347993e-51	-8.615850e-47
Msa0376820	Msa1036550	0.811045	8.519707e-51	-8.615850e-47
Msa0384880	Msa1036550	0.817993	2.471195e-52	-8.615850e-47
Msa0394400	Msa1036550	0.807161	5.785312e-50	-8.615850e-47
Msa0423750	Msa1036550	0.808108	3.641813e-50	-8.615850e-47
Msa0472130	Msa1036550	0.813088	3.055406e-51	-8.615850e-47
Msa0994290	Msa1036550	0.811007	8.683440e-51	-8.615850e-47
Msa1001350	Msa1036550	0.802631	5.119857e-49	-8.615850e-47
Msa1019240	Msa1036550	0.805979	1.027445e-49	-8.615850e-47
Msa1025940	Msa1036550	0.825704	4.054827e-54	-8.615850e-47
Msa1035120	Msa1036550	0.805601	1.233713e-49	-8.615850e-47
Msa1036550	Msa1093330	0.800271	1.558945e-48	-8.615850e-47
Msa1036550	Msa1125500	0.811921	5.496300e-51	-8.615850e-47
Msa1036550	Msa1126770	0.800119	1.673782e-48	-8.615850e-47
Msa1036550	Msa1131170	0.818103	2.334193e-52	-8.615850e-47
Msa1036550	Msa1166870	0.823319	1.476392e-53	-8.615850e-47
Msa1036550	Msa1179980	0.810697	1.013324e-50	-8.615850e-47
Msa1036550	Msa1184370	0.819720	1.001267e-52	-8.615850e-47
Msa1036550	Msa1206090	0.807492	4.923001e-50	-8.615850e-47
Msa1036550	Msa1207730	0.810893	9.191265e-51	-8.615850e-47
Msa1036550	Msa1208020	0.800791	1.221258e-48	-8.615850e-47
Msa1036550	Msa1227690	0.825354	4.908082e-54	-8.615850e-47
Msa1036550	Msa1256770	0.812748	3.627415e-51	-8.615850e-47
Msa1036550	Msa1257510	0.802440	5.604570e-49	-8.615850e-47
Msa1036550	Msa1270620	0.818172	2.251484e-52	-8.615850e-47
Msa1036550	Msa1270690	0.809487	1.846903e-50	-8.615850e-47
Msa1036550	Msa1306990	0.805351	1.392169e-49	-8.615850e-47
Msa1036550	Msa1329540	0.810782	9.714402e-51	-8.615850e-47
Msa1036550	Msa1331250	0.802532	5.364197e-49	-8.615850e-47
Msa1036550	Msa1331710	0.813121	3.005268e-51	-8.615850e-47
Msa1036550	Msa1345450	0.813227	2.848363e-51	-8.615850e-47
Msa1036550	Msa1349570	0.819671	1.027606e-52	-8.615850e-47
Msa1036550	Msa1365860	0.823788	1.146932e-53	-8.615850e-47
Msa1036550	Msa1369190	0.835327	1.789665e-56	-8.615850e-47
Msa1036550	Msa1442850	0.835525	1.595462e-56	-8.615850e-47
Msa1036550	Msa1450280	0.801496	8.761983e-49	-8.615850e-47
Msa1036550	Msa1462860	0.830560	2.741341e-55	-8.615850e-47
Msa1036550	Msa1465080	0.813138	2.978633e-51	-8.615850e-47
Msa0245060	Msa1036550	0.810410	1.169022e-50	-8.615850e-47
Msa0280430	Msa1036550	0.822260	2.604746e-53	-8.615850e-47
Msa0291520	Msa1036550	0.840055	1.094564e-57	-8.615850e-47
Msa0304590	Msa1036550	0.810560	1.084775e-50	-8.615850e-47
Msa0304660	Msa1036550	0.817058	4.015806e-52	-8.615850e-47
Msa0331700	Msa1036550	0.817296	3.550166e-52	-8.615850e-47
Msa0550570	Msa1036550	0.804073	2.572707e-49	-8.615850e-47
Msa0581070	Msa1036550	0.813645	2.304433e-51	-8.615850e-47
Msa0593700	Msa1036550	0.816483	5.402437e-52	-8.615850e-47
Msa0855010	Msa1036550	0.812678	3.757068e-51	-8.615850e-47
Msa0901450	Msa1036550	0.820986	5.132061e-53	-8.615850e-47
Msa0960830	Msa1036550	0.827970	1.165929e-54	-8.615850e-47
Msa0963020	Msa1036550	0.833748	4.463609e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036550	MtrunA17_Chr7g0260991	98.551	138	2	0	14	151	1	138	3.41e-100	283

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036550	AT1G48160.1	70.270	111	33	0	14	124	1	111	5.22e-57	175
Msa1036550	AT1G48160.2	70.270	111	33	0	14	124	1	111	5.22e-57	175

Find 64 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATATTATATCAACTCGATTT+TGG	0.174175	7_1:-72993217	None:intergenic
TGGTCCTTCCATGGTGTTTA+GGG	0.204157	7_1:-72992712	None:intergenic
TTGCCCAAGCCAAGCAATTT+AGG	0.210370	7_1:+72993138	Msa1036550:three_prime_UTR
AACCCTACTTGTGTCGAAAT+TGG	0.211223	7_1:+72990558	Msa1036550:CDS
TGATGCAGTCTCCTGCTTCT+TGG	0.227052	7_1:-72992732	None:intergenic
TTGGTCCTTCCATGGTGTTT+AGG	0.258012	7_1:-72992713	None:intergenic
AGATGATGATCGAAATTTAT+TGG	0.270807	7_1:-72990368	None:intergenic
TCGAAATTTATTGGGCCTAT+TGG	0.322431	7_1:-72990359	None:intergenic
TGGTTGAACCTAACTTATTC+CGG	0.330310	7_1:-72990339	None:intergenic
GGTACAACTTCAATTTAGTT+AGG	0.333994	7_1:-72992944	None:intergenic
TCATGCAAAGAGGACGAGTT+AGG	0.334941	7_1:+72990735	Msa1036550:CDS
GATGATGATCGAAATTTATT+GGG	0.338192	7_1:-72990367	None:intergenic
ACCCTACTTGTGTCGAAATT+GGG	0.338535	7_1:+72990559	Msa1036550:CDS
GCTGGACCTTCCAACAAATC+TGG	0.347799	7_1:+72992770	Msa1036550:CDS
GAAGTTGTACCACTCGGAAA+TGG	0.352593	7_1:+72992956	Msa1036550:three_prime_UTR
TCCACCTTTCCCAGATTTGT+TGG	0.371350	7_1:-72992780	None:intergenic
TGTGTTTCTTCTTGCAACTT+TGG	0.395224	7_1:-72993064	None:intergenic
GCAACCTAAATTGCTTGGCT+TGG	0.408185	7_1:-72993142	None:intergenic
GAATTGGGCCGGAATAAGTT+AGG	0.413010	7_1:+72990331	None:intergenic
CCTGCTTCTTGGTCCTTCCA+TGG	0.417818	7_1:-72992721	None:intergenic
ATAAGTTAGGTTCAACCAAT+AGG	0.422897	7_1:+72990344	Msa1036550:five_prime_UTR
CAACCTAAATTGCTTGGCTT+GGG	0.423585	7_1:-72993141	None:intergenic
GTTGCTGAAGGAAGACGAAT+TGG	0.430316	7_1:+72990516	Msa1036550:CDS
TGTTTATTACAGTTTCATAC+TGG	0.431944	7_1:+72992888	Msa1036550:three_prime_UTR
ACGATCCACTTCTTTATGCT+TGG	0.443869	7_1:-72990459	None:intergenic
CCTTTCCCAGATTTGTTGGA+AGG	0.448852	7_1:-72992776	None:intergenic
TCAACAACAACTGCAACTGC+TGG	0.454659	7_1:+72992752	Msa1036550:CDS
AAGAAGAAACACATCACGTT+TGG	0.470199	7_1:+72993074	Msa1036550:three_prime_UTR
AAGTTGTACCACTCGGAAAT+GGG	0.471619	7_1:+72992957	Msa1036550:three_prime_UTR
CATGCAAAGAGGACGAGTTA+GGG	0.478286	7_1:+72990736	Msa1036550:CDS
TTCACAAAGTGTAAGTAAGA+TGG	0.485859	7_1:+72990425	Msa1036550:CDS
AACCTCACCTCGATTGCAAA+AGG	0.496412	7_1:-72990606	None:intergenic
CTGGACCTTCCAACAAATCT+GGG	0.500340	7_1:+72992771	Msa1036550:CDS
TAAGGGCAACCTAAATTGCT+TGG	0.512435	7_1:-72993147	None:intergenic
CTTGGTCGTCCCTACTGCTA+AGG	0.514672	7_1:-72993165	None:intergenic
CCCCAATTTCGACACAAGTA+GGG	0.516511	7_1:-72990560	None:intergenic
CCATGGAAGGACCAAGAAGC+AGG	0.522661	7_1:+72992721	Msa1036550:CDS
CCCTACTTGTGTCGAAATTG+GGG	0.523869	7_1:+72990560	Msa1036550:CDS
AATGTTACGCGTTGCAGAGA+TGG	0.526719	7_1:+72992688	Msa1036550:CDS
TTTAGGTTGCCCTTAGCAGT+AGG	0.533507	7_1:+72993155	Msa1036550:three_prime_UTR
TCCCCAATTTCGACACAAGT+AGG	0.535068	7_1:-72990561	None:intergenic
CTCTTAGCAAAACTCATACT+CGG	0.542496	7_1:-72992863	None:intergenic
TTGGTCGTCCCTACTGCTAA+GGG	0.563436	7_1:-72993164	None:intergenic
CCTCGTGATTTCATGCAAAG+AGG	0.566493	7_1:+72990725	Msa1036550:CDS
AACTTACTGGAAGCTATGGA+TGG	0.567619	7_1:-72990794	None:intergenic
TTAGGTTGCCCTTAGCAGTA+GGG	0.569031	7_1:+72993156	Msa1036550:three_prime_UTR
TCCAACAAATCTGGGAAAGG+TGG	0.573312	7_1:+72992779	Msa1036550:CDS
CTTAAGATCTCTAGTCGTGG+TGG	0.584358	7_1:-72993241	None:intergenic
AGAAACACATCACGTTTGGA+AGG	0.593562	7_1:+72993078	Msa1036550:three_prime_UTR
GTCTTGTAGTAGCAAAACCT+TGG	0.597031	7_1:-72993183	None:intergenic
TTAAGATCTCTAGTCGTGGT+GGG	0.602084	7_1:-72993240	None:intergenic
CCTTCCAACAAATCTGGGAA+AGG	0.605602	7_1:+72992776	Msa1036550:CDS
AATTACCAAGCATAAAGAAG+TGG	0.608084	7_1:+72990454	Msa1036550:CDS
TTGTTGATCACAGCTTGACA+AGG	0.619387	7_1:+72990697	Msa1036550:intron
TGGTCCCTAAACACCATGGA+AGG	0.619588	7_1:+72992708	Msa1036550:CDS
CCTCTTTGCATGAAATCACG+AGG	0.620436	7_1:-72990725	None:intergenic
CAAAGTGTAAGTAAGATGGA+AGG	0.620681	7_1:+72990429	Msa1036550:CDS
TAAATTGAAGTTGTACCACT+CGG	0.647405	7_1:+72992950	Msa1036550:three_prime_UTR
AGCAAAACTCATACTCGGAG+AGG	0.666325	7_1:-72992858	None:intergenic
GATCTTAAGATCTCTAGTCG+TGG	0.675107	7_1:-72993244	None:intergenic
CTTAGCAGTAGGGACGACCA+AGG	0.689734	7_1:+72993166	Msa1036550:three_prime_UTR
GAGATGGTCCCTAAACACCA+TGG	0.690946	7_1:+72992704	Msa1036550:CDS
CTCTTTGCATGAAATCACGA+GGG	0.694337	7_1:-72990724	None:intergenic
GCGCAAAACCCATTTCCGAG+TGG	0.747399	7_1:-72992965	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TACTTTTATGTTAAATAAAA+TGG	-	chr7_1:72991338-72991357	None:intergenic	10.0%
!!	AATTAATTATTAGAGAAAAA+GGG	-	chr7_1:72992050-72992069	None:intergenic	10.0%
!!	TTCGAATATAGATTTAAAAA+GGG	-	chr7_1:72991589-72991608	None:intergenic	15.0%
!!	TTTCGAATATAGATTTAAAA+AGG	-	chr7_1:72991590-72991609	None:intergenic	15.0%
!!!	TTACAAATTCAAGTTTATTA+AGG	+	chr7_1:72991650-72991669	Msa1036550:intron	15.0%
!!	CAATTAATTATTAGAGAAAA+AGG	-	chr7_1:72992051-72992070	None:intergenic	15.0%
!!!	TCTCTTATTATTTTTTTTGA+GGG	+	chr7_1:72993267-72993286	Msa1036550:three_prime_UTR	15.0%
!!	ATATTGAAGAAAAAACTTAC+TGG	-	chr7_1:72990810-72990829	None:intergenic	20.0%
!!!	AACACATATTTTATGGAAAT+GGG	-	chr7_1:72991000-72991019	None:intergenic	20.0%
!!!	CTTATAATATTCCACTTTTA+TGG	+	chr7_1:72991207-72991226	Msa1036550:intron	20.0%
!!	TTCTTTCTTAGAAATGAAAT+TGG	+	chr7_1:72991448-72991467	Msa1036550:intron	20.0%
!!	AATGGTAAAGGTTAAAAAAT+GGG	+	chr7_1:72991896-72991915	Msa1036550:intron	20.0%
!!	ATTAATTGTAAGATCTGAAA+TGG	+	chr7_1:72992063-72992082	Msa1036550:intron	20.0%
!!!	TTATGATAGCTTATTTCTTA+TGG	+	chr7_1:72992490-72992509	Msa1036550:intron	20.0%
!!!	ATATTATATCAACTCGATTT+TGG	-	chr7_1:72993220-72993239	None:intergenic	20.0%
!!!	CTCTCTTATTATTTTTTTTG+AGG	+	chr7_1:72993266-72993285	Msa1036550:three_prime_UTR	20.0%
!!!	CTCTTATTATTTTTTTTGAG+GGG	+	chr7_1:72993268-72993287	Msa1036550:three_prime_UTR	20.0%
!	GATGATGATCGAAATTTATT+GGG	-	chr7_1:72990370-72990389	None:intergenic	25.0%
!	AGATGATGATCGAAATTTAT+TGG	-	chr7_1:72990371-72990390	None:intergenic	25.0%
!!!	TTTTGGAATTGATGTAAACA+GGG	-	chr7_1:72990491-72990510	None:intergenic	25.0%
!!!	TTTTTGGAATTGATGTAAAC+AGG	-	chr7_1:72990492-72990511	None:intergenic	25.0%
!	TATTCATATGTTTAGCTATC+TGG	+	chr7_1:72990848-72990867	Msa1036550:intron	25.0%
!	ATTCATATGTTTAGCTATCT+GGG	+	chr7_1:72990849-72990868	Msa1036550:intron	25.0%
!!	ACACATATTTTATGGAAATG+GGG	-	chr7_1:72990999-72991018	None:intergenic	25.0%
!!	GAACACATATTTTATGGAAA+TGG	-	chr7_1:72991001-72991020	None:intergenic	25.0%
!!	TGGTTAGAACACATATTTTA+TGG	-	chr7_1:72991007-72991026	None:intergenic	25.0%
!	AAGATATCAAAGTAATGTTC+TGG	-	chr7_1:72991027-72991046	None:intergenic	25.0%
!!	ACATTGATTATACTTTCTAC+CGG	+	chr7_1:72991179-72991198	Msa1036550:intron	25.0%
!!!	ATGCTACTTTAGTTAAAACA+AGG	-	chr7_1:72991684-72991703	None:intergenic	25.0%
!	GAATGGTAAAGGTTAAAAAA+TGG	+	chr7_1:72991895-72991914	Msa1036550:intron	25.0%
!!!	AACTACTTTAGAGTTTGATA+AGG	-	chr7_1:72992089-72992108	None:intergenic	25.0%
!	AGACCATGATAATATAACAT+TGG	+	chr7_1:72992125-72992144	Msa1036550:intron	25.0%
!	AAAAGAATAGCATAATCTTG+TGG	-	chr7_1:72992151-72992170	None:intergenic	25.0%
!	AGACCATGATAATATAACAT+TGG	+	chr7_1:72992125-72992144	Msa1036550:intron	25.0%
!	AAAAGAATAGCATAATCTTG+TGG	-	chr7_1:72992151-72992170	None:intergenic	25.0%
!	TATATTGTTATGATTTCCAG+CGG	-	chr7_1:72992429-72992448	None:intergenic	25.0%
!!!	TTTTGTTTTTATGTCTTTGC+AGG	+	chr7_1:72992656-72992675	Msa1036550:intron	25.0%
!	TGTTTATTACAGTTTCATAC+TGG	+	chr7_1:72992888-72992907	Msa1036550:three_prime_UTR	25.0%
	ATAAGTTAGGTTCAACCAAT+AGG	+	chr7_1:72990344-72990363	Msa1036550:five_prime_UTR	30.0%
	TTCACAAAGTGTAAGTAAGA+TGG	+	chr7_1:72990425-72990444	Msa1036550:CDS	30.0%
	AATTACCAAGCATAAAGAAG+TGG	+	chr7_1:72990454-72990473	Msa1036550:CDS	30.0%
	AAAAAACTTACTGGAAGCTA+TGG	-	chr7_1:72990801-72990820	None:intergenic	30.0%
	TTGTATCATCTGATTAGTAC+TGG	+	chr7_1:72990876-72990895	Msa1036550:intron	30.0%
	CCAACTATCTAAATACCATA+AGG	-	chr7_1:72990903-72990922	None:intergenic	30.0%
	CCTTATGGTATTTAGATAGT+TGG	+	chr7_1:72990900-72990919	Msa1036550:intron	30.0%
	TTGATATGACAAAGTGATAC+TGG	+	chr7_1:72991107-72991126	Msa1036550:intron	30.0%
	TGGAATATTATAAGTAGTGC+CGG	-	chr7_1:72991201-72991220	None:intergenic	30.0%
	TCACTTATAAGTTCCAATTG+TGG	+	chr7_1:72991259-72991278	Msa1036550:intron	30.0%
	TTATAAGTTCCAATTGTGGA+TGG	+	chr7_1:72991263-72991282	Msa1036550:intron	30.0%
!!!	GTTAGACTTTTGTTTCTGTT+CGG	+	chr7_1:72991312-72991331	Msa1036550:intron	30.0%
!!	AGTTAATGATTTGCTCACAT+AGG	+	chr7_1:72991374-72991393	Msa1036550:intron	30.0%
	AATGTTACATGCATATGGTA+TGG	-	chr7_1:72991479-72991498	None:intergenic	30.0%
	TGCATAATGTTACATGCATA+TGG	-	chr7_1:72991484-72991503	None:intergenic	30.0%
!!!	CTCCAATATTTTGACTGTTT+AGG	+	chr7_1:72991615-72991634	Msa1036550:intron	30.0%
	AAAGCACAAATTGAAGAAGT+AGG	+	chr7_1:72991710-72991729	Msa1036550:intron	30.0%
	TGTTAATAACATCACAACAG+AGG	+	chr7_1:72991754-72991773	Msa1036550:intron	30.0%
	GTTAATAACATCACAACAGA+GGG	+	chr7_1:72991755-72991774	Msa1036550:intron	30.0%
!	GTGTTTTTCTTCTTAGAGAA+TGG	+	chr7_1:72991878-72991897	Msa1036550:intron	30.0%
	TTCTTCTTAGAGAATGGTAA+AGG	+	chr7_1:72991884-72991903	Msa1036550:intron	30.0%
	AGTTACAAAATTGACCTACA+TGG	-	chr7_1:72991949-72991968	None:intergenic	30.0%
	TGGCCAATGTTATATTATCA+TGG	-	chr7_1:72992131-72992150	None:intergenic	30.0%
	TGGCCAATGTTATATTATCA+TGG	-	chr7_1:72992131-72992150	None:intergenic	30.0%
	TTTAAGCCTGCAGAAATTAT+AGG	+	chr7_1:72992241-72992260	Msa1036550:intron	30.0%
	CTAAATCCTATAATTTCTGC+AGG	-	chr7_1:72992250-72992269	None:intergenic	30.0%
	CTGCAGAAATTATAGGATTT+AGG	+	chr7_1:72992248-72992267	Msa1036550:intron	30.0%
	CAATTCTTATGCTTTCATGA+GGG	-	chr7_1:72992362-72992381	None:intergenic	30.0%
!	CTCATGAAAGCATAAGAATT+GGG	+	chr7_1:72992361-72992380	Msa1036550:intron	30.0%
	ATATTGTTATGATTTCCAGC+GGG	-	chr7_1:72992428-72992447	None:intergenic	30.0%
	AATATCATAGATGATCTCTC+TGG	-	chr7_1:72992465-72992484	None:intergenic	30.0%
	TGCAAGCATCACATATTAAA+AGG	+	chr7_1:72992549-72992568	Msa1036550:intron	30.0%
!	CTTGTTGAACATTTTCATAC+TGG	+	chr7_1:72992833-72992852	Msa1036550:three_prime_UTR	30.0%
	GGTACAACTTCAATTTAGTT+AGG	-	chr7_1:72992947-72992966	None:intergenic	30.0%
	TAAATTGAAGTTGTACCACT+CGG	+	chr7_1:72992950-72992969	Msa1036550:three_prime_UTR	30.0%
	TCGAAATTTATTGGGCCTAT+TGG	-	chr7_1:72990362-72990381	None:intergenic	35.0%
	CAAAGTGTAAGTAAGATGGA+AGG	+	chr7_1:72990429-72990448	Msa1036550:CDS	35.0%
!	TAAACTTCCTTTTGCAATCG+AGG	+	chr7_1:72990599-72990618	Msa1036550:CDS	35.0%
!	AGTTAGGGTTTTGCTCAAAA+AGG	+	chr7_1:72990751-72990770	Msa1036550:CDS	35.0%
!	TTTTGCTCAAAAAGGAGGAT+GGG	+	chr7_1:72990759-72990778	Msa1036550:CDS	35.0%
!	CATATTTTATGGAAATGGGG+TGG	-	chr7_1:72990996-72991015	None:intergenic	35.0%
!!	AAGTGATACTGGCTTTAAGT+TGG	+	chr7_1:72991118-72991137	Msa1036550:intron	35.0%
!!	AGTGATACTGGCTTTAAGTT+GGG	+	chr7_1:72991119-72991138	Msa1036550:intron	35.0%
!!	ATATTCCACTTTTATGGCTC+TGG	+	chr7_1:72991213-72991232	Msa1036550:intron	35.0%
	TCACATAGGTGAAGCTTAAA+AGG	+	chr7_1:72991388-72991407	Msa1036550:intron	35.0%
	GATCAACATAGAAGATACGT+AGG	+	chr7_1:72991508-72991527	Msa1036550:intron	35.0%
!	ACGTAGGAACTACATGTTTT+TGG	+	chr7_1:72991524-72991543	Msa1036550:intron	35.0%
	GGCCTAAACAGTCAAAATAT+TGG	-	chr7_1:72991620-72991639	None:intergenic	35.0%
!!	TGAATTTGTAAAAGTGCCAC+TGG	-	chr7_1:72991641-72991660	None:intergenic	35.0%
!	GTAAAACTAGTTTGCACTGA+CGG	+	chr7_1:72992017-72992036	Msa1036550:intron	35.0%
	CCAATTCTTATGCTTTCATG+AGG	-	chr7_1:72992363-72992382	None:intergenic	35.0%
!	CCTCATGAAAGCATAAGAAT+TGG	+	chr7_1:72992360-72992379	Msa1036550:intron	35.0%
	CTCTTAGCAAAACTCATACT+CGG	-	chr7_1:72992866-72992885	None:intergenic	35.0%
!	GGATGTAACATTTTGCTAAG+AGG	+	chr7_1:72992991-72993010	Msa1036550:three_prime_UTR	35.0%
	TGTGTTTCTTCTTGCAACTT+TGG	-	chr7_1:72993067-72993086	None:intergenic	35.0%
	AAGAAGAAACACATCACGTT+TGG	+	chr7_1:72993074-72993093	Msa1036550:three_prime_UTR	35.0%
	ACGATCCACTTCTTTATGCT+TGG	-	chr7_1:72990462-72990481	None:intergenic	40.0%
	TCCAAAAAGACTGTTGCTGA+AGG	+	chr7_1:72990504-72990523	Msa1036550:CDS	40.0%
!	TCCTTCAGCAACAGTCTTTT+TGG	-	chr7_1:72990508-72990527	None:intergenic	40.0%
!	AGTAGGGTTTTCGCATGATT+TGG	-	chr7_1:72990547-72990566	None:intergenic	40.0%
	AACCCTACTTGTGTCGAAAT+TGG	+	chr7_1:72990558-72990577	Msa1036550:CDS	40.0%
	ACCCTACTTGTGTCGAAATT+GGG	+	chr7_1:72990559-72990578	Msa1036550:CDS	40.0%
	TTGTTGATCACAGCTTGACA+AGG	+	chr7_1:72990697-72990716	Msa1036550:intron	40.0%
	CTCTTTGCATGAAATCACGA+GGG	-	chr7_1:72990727-72990746	None:intergenic	40.0%
!	TAGGGTTTTGCTCAAAAAGG+AGG	+	chr7_1:72990754-72990773	Msa1036550:CDS	40.0%
!	GTTTTGCTCAAAAAGGAGGA+TGG	+	chr7_1:72990758-72990777	Msa1036550:CDS	40.0%
	AACTTACTGGAAGCTATGGA+TGG	-	chr7_1:72990797-72990816	None:intergenic	40.0%
!	CTGATTAGTACTGGACCTTA+TGG	+	chr7_1:72990885-72990904	Msa1036550:intron	40.0%
	CTATCATTCCTTGTCTAAGC+CGG	+	chr7_1:72990967-72990986	Msa1036550:intron	40.0%
	ACTCTAAGTCCATCCACAAT+TGG	-	chr7_1:72991275-72991294	None:intergenic	40.0%
!	GGATGGACTTAGAGTAGAAT+TGG	+	chr7_1:72991280-72991299	Msa1036550:intron	40.0%
!!!	ATTTTGACTGTTTAGGCCAG+TGG	+	chr7_1:72991622-72991641	Msa1036550:intron	40.0%
!!	TTTCATGAGGGCGTTTGAAT+TGG	-	chr7_1:72992350-72992369	None:intergenic	40.0%
	TAAGAATTGGGATGAACCTG+AGG	+	chr7_1:72992373-72992392	Msa1036550:intron	40.0%
	AAGAATTGGGATGAACCTGA+GGG	+	chr7_1:72992374-72992393	Msa1036550:intron	40.0%
	ATAGATGATCTCTCTGGTGT+GGG	-	chr7_1:72992459-72992478	None:intergenic	40.0%
!	CGAGTATGAGTTTTGCTAAG+AGG	+	chr7_1:72992864-72992883	Msa1036550:three_prime_UTR	40.0%
	AAGTTGTACCACTCGGAAAT+GGG	+	chr7_1:72992957-72992976	Msa1036550:three_prime_UTR	40.0%
	AGAAACACATCACGTTTGGA+AGG	+	chr7_1:72993078-72993097	Msa1036550:three_prime_UTR	40.0%
	CAACCTAAATTGCTTGGCTT+GGG	-	chr7_1:72993144-72993163	None:intergenic	40.0%
	TAAGGGCAACCTAAATTGCT+TGG	-	chr7_1:72993150-72993169	None:intergenic	40.0%
	GTCTTGTAGTAGCAAAACCT+TGG	-	chr7_1:72993186-72993205	None:intergenic	40.0%
	TTAAGATCTCTAGTCGTGGT+GGG	-	chr7_1:72993243-72993262	None:intergenic	40.0%
	GATCTTAAGATCTCTAGTCG+TGG	-	chr7_1:72993247-72993266	None:intergenic	40.0%
	GTTGCTGAAGGAAGACGAAT+TGG	+	chr7_1:72990516-72990535	Msa1036550:CDS	45.0%
	CCCCAATTTCGACACAAGTA+GGG	-	chr7_1:72990563-72990582	None:intergenic	45.0%
	CCCTACTTGTGTCGAAATTG+GGG	+	chr7_1:72990560-72990579	Msa1036550:CDS	45.0%
	TCCCCAATTTCGACACAAGT+AGG	-	chr7_1:72990564-72990583	None:intergenic	45.0%
!	TTCCTTTTGCAATCGAGGTG+AGG	+	chr7_1:72990604-72990623	Msa1036550:intron	45.0%
	AACCTCACCTCGATTGCAAA+AGG	-	chr7_1:72990609-72990628	None:intergenic	45.0%
	CCTCTTTGCATGAAATCACG+AGG	-	chr7_1:72990728-72990747	None:intergenic	45.0%
	CCTCGTGATTTCATGCAAAG+AGG	+	chr7_1:72990725-72990744	Msa1036550:CDS	45.0%
	TCATGCAAAGAGGACGAGTT+AGG	+	chr7_1:72990735-72990754	Msa1036550:CDS	45.0%
	CATGCAAAGAGGACGAGTTA+GGG	+	chr7_1:72990736-72990755	Msa1036550:CDS	45.0%
	TTAGTGACACGTCAGCATCA+GGG	-	chr7_1:72991057-72991076	None:intergenic	45.0%
	TGAGTCCAGAGCCATAAAAG+TGG	-	chr7_1:72991221-72991240	None:intergenic	45.0%
!	ACTCAACACTGGATTGGAAC+TGG	+	chr7_1:72991236-72991255	Msa1036550:intron	45.0%
	AACCTGTCATCTTGCCATGT+AGG	+	chr7_1:72991932-72991951	Msa1036550:intron	45.0%
	GATTTAGGCAGAGAGAGAGA+AGG	+	chr7_1:72992263-72992282	Msa1036550:intron	45.0%
	GGCGAAGAATACGTTCTTAG+AGG	+	chr7_1:72992314-72992333	Msa1036550:intron	45.0%
	AGAATTGGGATGAACCTGAG+GGG	+	chr7_1:72992375-72992394	Msa1036550:intron	45.0%
	CATAGATGATCTCTCTGGTG+TGG	-	chr7_1:72992460-72992479	None:intergenic	45.0%
	AATGTTACGCGTTGCAGAGA+TGG	+	chr7_1:72992688-72992707	Msa1036550:CDS	45.0%
	TGGTCCTTCCATGGTGTTTA+GGG	-	chr7_1:72992715-72992734	None:intergenic	45.0%
	TTGGTCCTTCCATGGTGTTT+AGG	-	chr7_1:72992716-72992735	None:intergenic	45.0%
	TCAACAACAACTGCAACTGC+TGG	+	chr7_1:72992752-72992771	Msa1036550:CDS	45.0%
	CTGGACCTTCCAACAAATCT+GGG	+	chr7_1:72992771-72992790	Msa1036550:CDS	45.0%
!!	CCTTTCCCAGATTTGTTGGA+AGG	-	chr7_1:72992779-72992798	None:intergenic	45.0%
	CCTTCCAACAAATCTGGGAA+AGG	+	chr7_1:72992776-72992795	Msa1036550:CDS	45.0%
	TCCAACAAATCTGGGAAAGG+TGG	+	chr7_1:72992779-72992798	Msa1036550:CDS	45.0%
	TCCACCTTTCCCAGATTTGT+TGG	-	chr7_1:72992783-72992802	None:intergenic	45.0%
	AGCAAAACTCATACTCGGAG+AGG	-	chr7_1:72992861-72992880	None:intergenic	45.0%
	GAAGTTGTACCACTCGGAAA+TGG	+	chr7_1:72992956-72992975	Msa1036550:three_prime_UTR	45.0%
	TTGCCCAAGCCAAGCAATTT+AGG	+	chr7_1:72993138-72993157	Msa1036550:three_prime_UTR	45.0%
	GCAACCTAAATTGCTTGGCT+TGG	-	chr7_1:72993145-72993164	None:intergenic	45.0%
!!	TTTAGGTTGCCCTTAGCAGT+AGG	+	chr7_1:72993155-72993174	Msa1036550:three_prime_UTR	45.0%
!	TTAGGTTGCCCTTAGCAGTA+GGG	+	chr7_1:72993156-72993175	Msa1036550:three_prime_UTR	45.0%
	CTTAAGATCTCTAGTCGTGG+TGG	-	chr7_1:72993244-72993263	None:intergenic	45.0%
	TCATTCCTTGTCTAAGCCGG+AGG	+	chr7_1:72990970-72990989	Msa1036550:intron	50.0%
	GTTAGTGACACGTCAGCATC+AGG	-	chr7_1:72991058-72991077	None:intergenic	50.0%
!!	TATGGCTCTGGACTCAACAC+TGG	+	chr7_1:72991225-72991244	Msa1036550:intron	50.0%
	CTCTGGACTCAACACTGGAT+TGG	+	chr7_1:72991230-72991249	Msa1036550:intron	50.0%
	GACCTACATGGCAAGATGAC+AGG	-	chr7_1:72991937-72991956	None:intergenic	50.0%
	GGAAACTGAAACCCGTTGCA+CGG	+	chr7_1:72992284-72992303	Msa1036550:intron	50.0%
	AAACCCGTTGCACGGTGAAA+AGG	+	chr7_1:72992292-72992311	Msa1036550:intron	50.0%
	AACCCGTTGCACGGTGAAAA+GGG	+	chr7_1:72992293-72992312	Msa1036550:intron	50.0%
	GAATTGGGATGAACCTGAGG+GGG	+	chr7_1:72992376-72992395	Msa1036550:intron	50.0%
	GAGATGGTCCCTAAACACCA+TGG	+	chr7_1:72992704-72992723	Msa1036550:CDS	50.0%
	TGGTCCCTAAACACCATGGA+AGG	+	chr7_1:72992708-72992727	Msa1036550:CDS	50.0%
	TGATGCAGTCTCCTGCTTCT+TGG	-	chr7_1:72992735-72992754	None:intergenic	50.0%
	GCTGGACCTTCCAACAAATC+TGG	+	chr7_1:72992770-72992789	Msa1036550:CDS	50.0%
!!	CGGAAATGGGTTTTGCGCAT+AGG	+	chr7_1:72992970-72992989	Msa1036550:three_prime_UTR	50.0%
	TTGGTCGTCCCTACTGCTAA+GGG	-	chr7_1:72993167-72993186	None:intergenic	50.0%
	TATGGAAATGGGGTGGCCTC+CGG	-	chr7_1:72990989-72991008	None:intergenic	55.0%
	TGACACGTCAGCATCAGGGT+CGG	-	chr7_1:72991053-72991072	None:intergenic	55.0%
!	TCGCCCTTTTCACCGTGCAA+CGG	-	chr7_1:72992299-72992318	None:intergenic	55.0%
	ATTTCCAGCGGGACGTCTTC+CGG	-	chr7_1:72992417-72992436	None:intergenic	55.0%
	CCTGCTTCTTGGTCCTTCCA+TGG	-	chr7_1:72992724-72992743	None:intergenic	55.0%
	CCATGGAAGGACCAAGAAGC+AGG	+	chr7_1:72992721-72992740	Msa1036550:CDS	55.0%
	GCGCAAAACCCATTTCCGAG+TGG	-	chr7_1:72992968-72992987	None:intergenic	55.0%
	CTTGGTCGTCCCTACTGCTA+AGG	-	chr7_1:72993168-72993187	None:intergenic	55.0%
	CTTAGCAGTAGGGACGACCA+AGG	+	chr7_1:72993166-72993185	Msa1036550:three_prime_UTR	55.0%
!	CGCCCTTTTCACCGTGCAAC+GGG	-	chr7_1:72992298-72992317	None:intergenic	60.0%
	GACGAAGTTGTCTCCCCCTC+AGG	-	chr7_1:72992392-72992411	None:intergenic	60.0%
	GGGGAGACAACTTCGTCCAC+CGG	+	chr7_1:72992395-72992414	Msa1036550:intron	60.0%
	GGTGGCCTCCGGCTTAGACA+AGG	-	chr7_1:72990978-72990997	None:intergenic	65.0%
	TCCACCGGAAGACGTCCCGC+TGG	+	chr7_1:72992410-72992429	Msa1036550:intron	70.0%
	TCCAGCGGGACGTCTTCCGG+TGG	-	chr7_1:72992414-72992433	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	72990342	72993304	72990342	ID=Msa1036550;Name=Msa1036550
chr7_1	mRNA	72990342	72993304	72990342	ID=Msa1036550-mRNA-1;Parent=Msa1036550;Name=Msa1036550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63\|1\|1\|1\|1\|1\|3\|487\|151
chr7_1	exon	72990342	72990620	72990342	ID=Msa1036550-mRNA-1:exon:17865;Parent=Msa1036550-mRNA-1
chr7_1	exon	72990710	72990809	72990710	ID=Msa1036550-mRNA-1:exon:17866;Parent=Msa1036550-mRNA-1
chr7_1	exon	72992678	72993304	72992678	ID=Msa1036550-mRNA-1:exon:17867;Parent=Msa1036550-mRNA-1
chr7_1	five_prime_UTR	72990342	72990404	72990342	ID=Msa1036550-mRNA-1:five_prime_utr;Parent=Msa1036550-mRNA-1
chr7_1	CDS	72990405	72990620	72990405	ID=Msa1036550-mRNA-1:cds;Parent=Msa1036550-mRNA-1
chr7_1	CDS	72990710	72990809	72990710	ID=Msa1036550-mRNA-1:cds;Parent=Msa1036550-mRNA-1
chr7_1	CDS	72992678	72992817	72992678	ID=Msa1036550-mRNA-1:cds;Parent=Msa1036550-mRNA-1
chr7_1	three_prime_UTR	72992818	72993304	72992818	ID=Msa1036550-mRNA-1:three_prime_utr;Parent=Msa1036550-mRNA-1

Gene Sequence

>Msa1036550

ATGAGAGTAATAGATCTGATTTCACAAAGTGTAAGTAAGATGGAAGGTGAATTACCAAGCATAAAGAAGTGGATCGTGTTATACCCTGTTTACATCAATTCCAAAAAGACTGTTGCTGAAGGAAGACGAATTGGAATCTCCAAATCATGCGAAAACCCTACTTGTGTCGAAATTGGGGATTGTTGCAGTTTTCTTAAACTTCCTTTTGCAATCGAGCTTGACAAGGCTTACCCTCGTGATTTCATGCAAAGAGGACGAGTTAGGGTTTTGCTCAAAAAGGAGGATGGGACTCTCATTAATCCATCCATAGCTTCCAGAAAGCAACTAATGTTACGCGTTGCAGAGATGGTCCCTAAACACCATGGAAGGACCAAGAAGCAGGAGACTGCATCAACAACAACTGCAACTGCTGGACCTTCCAACAAATCTGGGAAAGGTGGAAAAAAGAGAAGATAA

Protein sequence

>Msa1036550

MRVIDLISQSVSKMEGELPSIKKWIVLYPVYINSKKTVAEGRRIGISKSCENPTCVEIGDCCSFLKLPFAIELDKAYPRDFMQRGRVRVLLKKEDGTLINPSIASRKQLMLRVAEMVPKHHGRTKKQETASTTTATAGPSNKSGKGGKKRR*