AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038190 MtrunA17_Chr7g0274341 96.930 228 6 1 1 228 1 227 3.17e-156 432
Msa1038190 MtrunA17_Chr1g0190481 65.368 231 57 9 1 228 1 211 3.21e-68 208
Msa1038190 MtrunA17_Chr8g0346111 62.500 80 27 2 7 84 6 84 5.86e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038190 AT5G28640.1 57.265 234 70 5 1 228 1 210 1.53e-57 181
Msa1038190 AT4G00850.1 65.753 73 23 1 7 77 6 78 3.84e-26 101
Msa1038190 AT4G00850.2 66.667 72 22 1 7 76 6 77 4.00e-26 101
Msa1038190 AT1G01160.1 63.889 72 25 1 2 72 3 74 8.50e-23 92.0
Msa1038190 AT1G01160.2 43.396 106 25 2 2 72 3 108 6.07e-16 74.3
Msa1038190 AT5G28640.2 44.186 172 66 5 63 228 1 148 1.89e-11 60.5
Msa1038190 AT5G28640.3 44.186 172 66 5 63 228 1 148 1.89e-11 60.5

Find 95 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATTAAGGTAAACTATT+TGG 0.143303 7_1:-74987832 Msa1038190:three_prime_UTR
GTTTATCTTGTGCTTAATTA+AGG 0.191732 7_1:-74987844 Msa1038190:three_prime_UTR
TTAGCTGTTCAGATCGAATT+TGG 0.252519 7_1:-74988012 Msa1038190:three_prime_UTR
GGGTTTGCACAGAAGTCTTA+TGG 0.269289 7_1:-74988158 Msa1038190:CDS
CTTGGAGGCGGTGGAACTTC+AGG 0.325122 7_1:-74988292 Msa1038190:CDS
AAGCTAAAATGCATCTGAAT+TGG 0.337794 7_1:+74987970 None:intergenic
AGAGAGAGAGCATTGGGGTT+GGG 0.342124 7_1:+74991442 None:intergenic
ACCTGCACCTGTGTTTCCTT+TGG 0.359038 7_1:-74991275 Msa1038190:five_prime_UTR
TCAACATTGGGTTCTGGTGG+TGG 0.361229 7_1:-74988211 Msa1038190:CDS
TGATCAGTGGTGACGTTGTT+TGG 0.375156 7_1:+74991068 None:intergenic
GATTGTAGAGAGTCAGAATT+CGG 0.378404 7_1:-74989137 Msa1038190:CDS
TTCTGGTGGTGGAGTGATGC+AGG 0.385903 7_1:-74988455 Msa1038190:CDS
TCATGGGCTGCATCTGCATC+AGG 0.386454 7_1:+74991105 None:intergenic
GAGAGAGAGCATTGGGGTTG+GGG 0.390988 7_1:+74991443 None:intergenic
GCTGTTGCTGCGCGAATAGA+AGG 0.398335 7_1:+74988350 None:intergenic
ATGGTGTAGCAGTACCCTTC+TGG 0.398459 7_1:-74988472 Msa1038190:intron
CCGGGCATGGTTGGTGGTTG+AGG 0.401796 7_1:+74988593 None:intergenic
TACCTCAAATCTTCTGATGA+TGG 0.413883 7_1:-74988049 Msa1038190:CDS
GGTCGAGGCGGCGGTGGTGA+AGG 0.415202 7_1:-74988085 Msa1038190:CDS
TGGATAGTAGGCTGCCATCA+TGG 0.422967 7_1:+74991088 None:intergenic
CAACATTGGGTTCTGGTGGT+GGG 0.423263 7_1:-74988210 Msa1038190:CDS
GATGCAGGGTCAGCAGCAGC+AGG 0.427997 7_1:-74988440 Msa1038190:CDS
GGTGACGTTGTTTGGATAGT+AGG 0.433249 7_1:+74991076 None:intergenic
AGTGGCAAGCAACAAGAGAT+TGG 0.434502 7_1:-74988130 Msa1038190:CDS
GGTTTGCACAGAAGTCTTAT+GGG 0.434506 7_1:-74988157 Msa1038190:CDS
CACCACTGATCACATTCAAC+AGG 0.436615 7_1:-74991057 Msa1038190:intron
TTGCAAGAAGAGAACTCAAA+AGG 0.437518 7_1:-74991341 Msa1038190:five_prime_UTR
CATCAGAAGATTTGAGGTAA+AGG 0.438000 7_1:+74988053 None:intergenic
TCCCATCATCAGAAGATTTG+AGG 0.441249 7_1:+74988047 None:intergenic
TAGCAGTACCCTTCTGGTGG+TGG 0.451363 7_1:-74988466 Msa1038190:CDS
GGATAGTAGGCTGCCATCAT+GGG 0.463215 7_1:+74991089 None:intergenic
AGTAGCTCAACATTGGGTTC+TGG 0.464044 7_1:-74988217 Msa1038190:CDS
TCCCACGTTCATATTGCTAC+AGG 0.468413 7_1:+74988246 None:intergenic
AATTAGTTATTTAGTTAGCT+AGG 0.469547 7_1:-74987939 Msa1038190:three_prime_UTR
GAGAGAGAGAGCATTGGGGT+TGG 0.473989 7_1:+74991441 None:intergenic
GACACAACAACAACAGCTAA+TGG 0.478063 7_1:-74988386 Msa1038190:CDS
TCTAGATCAATTAGCTAGCT+AGG 0.481431 7_1:-74987905 Msa1038190:three_prime_UTR
GCACTTCAACAGCATCAACT+TGG 0.489725 7_1:-74988310 Msa1038190:CDS
TTCATCCGCGGTGGAGGAGA+GGG 0.494151 7_1:-74988178 Msa1038190:CDS
TGCTGTTGAAGTGCTGAGTA+AGG 0.496707 7_1:+74988319 None:intergenic
ACCACCAACCATGCCCGGTC+AGG 0.497687 7_1:-74988588 Msa1038190:intron
ACCTCAAATCTTCTGATGAT+GGG 0.498318 7_1:-74988048 Msa1038190:CDS
CCTGACTTCATCCGCGGTGG+AGG 0.498540 7_1:-74988184 Msa1038190:CDS
TCCAAAGGAAACACAGGTGC+AGG 0.499472 7_1:+74991274 None:intergenic
TGCGTGTGTTTCTACCTGAC+CGG 0.501251 7_1:+74988574 None:intergenic
ATTGTAGAGAGTCAGAATTC+GGG 0.501834 7_1:-74989136 Msa1038190:CDS
ACCTGACCGGGCATGGTTGG+TGG 0.503390 7_1:+74988587 None:intergenic
GTGGCAAGCAACAAGAGATT+GGG 0.506357 7_1:-74988129 Msa1038190:CDS
GAGTGAGAGACAAGAAAGAA+AGG 0.506535 7_1:-74991466 Msa1038190:five_prime_UTR
CAGCATCAACTTGGAGGCGG+TGG 0.509178 7_1:-74988301 Msa1038190:CDS
GATCAAGGTCGAGGCGGCGG+TGG 0.509972 7_1:-74988091 Msa1038190:CDS
TGTTTCTACCTGACCGGGCA+TGG 0.514492 7_1:+74988580 None:intergenic
AGAAGTCTTATGGGAGGTAG+TGG 0.518354 7_1:-74988148 Msa1038190:CDS
TCTGATCAAGGTCGAGGCGG+CGG 0.521218 7_1:-74988094 Msa1038190:CDS
TGCAAGAAGAGAACTCAAAA+GGG 0.527986 7_1:-74991340 Msa1038190:five_prime_UTR
CGAGGCGGCGGTGGTGAAGG+CGG 0.531777 7_1:-74988082 Msa1038190:CDS
AAGTGCAGAGGAAGATCCAA+AGG 0.532693 7_1:+74991259 None:intergenic
TCTACCTGACCGGGCATGGT+TGG 0.533855 7_1:+74988584 None:intergenic
AGCTCAACATTGGGTTCTGG+TGG 0.534520 7_1:-74988214 Msa1038190:CDS
CCTCAACCACCAACCATGCC+CGG 0.538594 7_1:-74988593 Msa1038190:CDS
CTTCATCCGCGGTGGAGGAG+AGG 0.548468 7_1:-74988179 Msa1038190:CDS
AGGAGGTAGTAGCTCAACAT+TGG 0.549524 7_1:-74988224 Msa1038190:CDS
GGAGGTAGTAGCTCAACATT+GGG 0.550428 7_1:-74988223 Msa1038190:CDS
AGCAATATGAACGTGGGAGG+AGG 0.551007 7_1:-74988241 Msa1038190:CDS
CTTCAACAGCATCAACTTGG+AGG 0.554957 7_1:-74988307 Msa1038190:CDS
ATGAGTTCTTCATCTGATCA+AGG 0.563016 7_1:-74988106 Msa1038190:CDS
TGCATCACTCCACCACCAGA+AGG 0.580900 7_1:+74988457 None:intergenic
TCTTCATCTGATCAAGGTCG+AGG 0.583737 7_1:-74988100 Msa1038190:CDS
TCTGGTGGTGGAGTGATGCA+GGG 0.593405 7_1:-74988454 Msa1038190:CDS
GAGAATCAGCTATTGCAGCT+AGG 0.595794 7_1:+74988618 None:intergenic
GGAAGATCCAAAGGAAACAC+AGG 0.600293 7_1:+74991268 None:intergenic
TTTCCTGACTTCATCCGCGG+TGG 0.603311 7_1:-74988187 Msa1038190:CDS
AACATATCAGGAATCAAGCA+AGG 0.610316 7_1:-74988661 Msa1038190:intron
ACAAAGTTGAAGAAGTGCAG+AGG 0.613672 7_1:+74991247 None:intergenic
GGGTTTCCTGACTTCATCCG+CGG 0.614235 7_1:-74988190 Msa1038190:CDS
GCCTGTAGCAATATGAACGT+GGG 0.617388 7_1:-74988247 Msa1038190:CDS
GGGAGGAGCACACTACATGC+AGG 0.618698 7_1:-74988419 Msa1038190:CDS
ATGCAGGGTCAGCAGCAGCA+GGG 0.624777 7_1:-74988439 Msa1038190:CDS
AGAGAGAGATATATAGCTAG+TGG 0.626882 7_1:-74991156 Msa1038190:five_prime_UTR
CTGTTGCTGCGCGAATAGAA+GGG 0.627676 7_1:+74988351 None:intergenic
TGCAACGTTACGCAACGCAA+CGG 0.635049 7_1:+74991489 None:intergenic
GCGTGTGTTTCTACCTGACC+GGG 0.637957 7_1:+74988575 None:intergenic
CAACAGCATCAACTTGGAGG+CGG 0.642913 7_1:-74988304 Msa1038190:CDS
GATGCAGATGCAGCCCATGA+TGG 0.647712 7_1:-74991102 Msa1038190:CDS
GCATCACTCCACCACCAGAA+GGG 0.647825 7_1:+74988458 None:intergenic
GTGTAGCAGTACCCTTCTGG+TGG 0.652208 7_1:-74988469 Msa1038190:intron
AATTAAGCACAAGATAAACA+AGG 0.654592 7_1:+74987848 None:intergenic
CAGGGTCAGCAGCAGCAGGG+AGG 0.660642 7_1:-74988436 Msa1038190:CDS
AGCCTGTAGCAATATGAACG+TGG 0.662936 7_1:-74988248 Msa1038190:CDS
TGTAGCAATATGAACGTGGG+AGG 0.675964 7_1:-74988244 Msa1038190:CDS
TTGCACAGAAGTCTTATGGG+AGG 0.683269 7_1:-74988154 Msa1038190:CDS
TTGCTGCGCGAATAGAAGGG+AGG 0.689392 7_1:+74988354 None:intergenic
TCATCTGATCAAGGTCGAGG+CGG 0.708317 7_1:-74988097 Msa1038190:CDS
AACCTGTTGAATGTGATCAG+TGG 0.722866 7_1:+74991055 None:intergenic
GCAAACCCTCTCCTCCACCG+CGG 0.734679 7_1:+74988173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAATAATATAACGA+TGG + chr7_1:74988076-74988095 None:intergenic 10.0%
!!! TAATTTTGGAATTTTAATTT+GGG - chr7_1:74989355-74989374 Msa1038190:intron 10.0%
!! AAAAAAATAATTTCTTCATT+AGG - chr7_1:74989491-74989510 Msa1038190:intron 10.0%
!!! ATGAATCTAATTTTATTTAA+CGG - chr7_1:74990402-74990421 Msa1038190:intron 10.0%
!! CAAATTAAAATTCCAAAATT+AGG + chr7_1:74989356-74989375 None:intergenic 15.0%
!!! CTAATTTTGGAATTTTAATT+TGG - chr7_1:74989354-74989373 Msa1038190:intron 15.0%
!! ATTGAATTCAATTGATATAT+AGG + chr7_1:74990199-74990218 None:intergenic 15.0%
!!! TTCATTAATTTTATGATATG+AGG - chr7_1:74990229-74990248 Msa1038190:intron 15.0%
!!! TTTTCTATCTTTTCAATATT+GGG + chr7_1:74990255-74990274 None:intergenic 15.0%
!!! TTTTTCTATCTTTTCAATAT+TGG + chr7_1:74990256-74990275 None:intergenic 15.0%
!! AATATTGAAAAGATAGAAAA+AGG - chr7_1:74990255-74990274 Msa1038190:intron 15.0%
!!! ACATTGTGATATAATTTTTT+TGG - chr7_1:74990716-74990735 Msa1038190:intron 15.0%
!! GTCAAAAAATATACTAAACT+AGG + chr7_1:74989146-74989165 None:intergenic 20.0%
!! AAAAGAAAAAGAATAGTCTA+TGG + chr7_1:74989326-74989345 None:intergenic 20.0%
!!! TCATAAAATCTTACCATTTT+AGG + chr7_1:74989425-74989444 None:intergenic 20.0%
!! TCATCATTTGTAATTAGAAA+TGG - chr7_1:74989696-74989715 Msa1038190:intron 20.0%
!!! ATCTAATTTTATTTAACGGT+TGG - chr7_1:74990406-74990425 Msa1038190:intron 20.0%
!!! TCTAATTTTATTTAACGGTT+GGG - chr7_1:74990407-74990426 Msa1038190:intron 20.0%
!! GTATATATGTGTTTATGTAT+CGG + chr7_1:74990486-74990505 None:intergenic 20.0%
!!! GTTTAATCATTGATTATTGA+TGG - chr7_1:74990777-74990796 Msa1038190:intron 20.0%
!! AATTAGTTATTTAGTTAGCT+AGG - chr7_1:74991329-74991348 Msa1038190:five_prime_UTR 20.0%
!! CTTAATTAAGGTAAACTATT+TGG - chr7_1:74991436-74991455 Msa1038190:five_prime_UTR 20.0%
! TATTACACATCACTTGTATA+TGG - chr7_1:74988352-74988371 Msa1038190:CDS 25.0%
! TAACTCTTTAACATTAGTTG+TGG + chr7_1:74989185-74989204 None:intergenic 25.0%
! GAAAATATGTTTACAAGTAG+AGG - chr7_1:74989227-74989246 Msa1038190:intron 25.0%
! AAACAGGTTATCATTTAATG+TGG - chr7_1:74989273-74989292 Msa1038190:intron 25.0%
! AACAGGTTATCATTTAATGT+GGG - chr7_1:74989274-74989293 Msa1038190:intron 25.0%
!!! ACCATTTCATGACTATTTTT+GGG + chr7_1:74989626-74989645 None:intergenic 25.0%
!! AACCATTTCATGACTATTTT+TGG + chr7_1:74989627-74989646 None:intergenic 25.0%
! TTGCATAAAATAAGAGAAGA+GGG + chr7_1:74989795-74989814 None:intergenic 25.0%
! AAATATGCAAACGAATTAAC+CGG + chr7_1:74990026-74990045 None:intergenic 25.0%
! GGTTGTGTAAAATAAGTAAA+AGG + chr7_1:74990077-74990096 None:intergenic 25.0%
!! AATTATGCTTGTATTCCTTT+TGG - chr7_1:74990336-74990355 Msa1038190:intron 25.0%
!! ATTATGCTTGTATTCCTTTT+GGG - chr7_1:74990337-74990356 Msa1038190:intron 25.0%
! ATGAAGTTTCAGTTCTATAT+GGG + chr7_1:74990450-74990469 None:intergenic 25.0%
! TATGAAGTTTCAGTTCTATA+TGG + chr7_1:74990451-74990470 None:intergenic 25.0%
! GAACTGAAACTTCATATATA+AGG - chr7_1:74990455-74990474 Msa1038190:intron 25.0%
! AATTAAGCACAAGATAAACA+AGG + chr7_1:74991423-74991442 None:intergenic 25.0%
! GTTTATCTTGTGCTTAATTA+AGG - chr7_1:74991424-74991443 Msa1038190:five_prime_UTR 25.0%
AGAAGCAAGGAAATTAAAGA+TGG + chr7_1:74988280-74988299 None:intergenic 30.0%
ACATCACTTGTATATGGATA+TGG - chr7_1:74988358-74988377 Msa1038190:CDS 30.0%
! GAGAATATTTTGCAGACATA+AGG + chr7_1:74988713-74988732 None:intergenic 30.0%
ACAAAAATGAATCCAACCAA+AGG + chr7_1:74988795-74988814 None:intergenic 30.0%
TATACATTCTTATCTCAGGT+AGG + chr7_1:74988849-74988868 None:intergenic 30.0%
GTCATATACATTCTTATCTC+AGG + chr7_1:74988853-74988872 None:intergenic 30.0%
TAAGATATGTGAACATAGAG+AGG + chr7_1:74988881-74988900 None:intergenic 30.0%
TGGTTTGATAAAGACAAAGA+AGG + chr7_1:74988930-74988949 None:intergenic 30.0%
AAAGAAACAAGTAGTAGTGT+TGG + chr7_1:74988950-74988969 None:intergenic 30.0%
TTCATCAAACAACAAAGAGT+TGG + chr7_1:74989532-74989551 None:intergenic 30.0%
TCCCAAAAATAGTCATGAAA+TGG - chr7_1:74989622-74989641 Msa1038190:intron 30.0%
TAATTAGAAATGGTTGCCTT+GGG - chr7_1:74989706-74989725 Msa1038190:intron 30.0%
CTAACGTCTTATATCCTAAA+TGG - chr7_1:74989732-74989751 Msa1038190:intron 30.0%
CTTGCATAAAATAAGAGAAG+AGG + chr7_1:74989796-74989815 None:intergenic 30.0%
GGATGTTTGAAAGAGAAAAT+TGG + chr7_1:74989841-74989860 None:intergenic 30.0%
!!! CACATGTTTTAACACAACAA+CGG + chr7_1:74989867-74989886 None:intergenic 30.0%
TTTCAACACTCACTCTAATT+GGG + chr7_1:74989947-74989966 None:intergenic 30.0%
! TTTTCAACACTCACTCTAAT+TGG + chr7_1:74989948-74989967 None:intergenic 30.0%
! TATTTTACACAACCAGTACT+TGG - chr7_1:74990083-74990102 Msa1038190:intron 30.0%
GAATTAGACTACTACTTACT+CGG + chr7_1:74990175-74990194 None:intergenic 30.0%
AGATAGAAAAAGGTAAGAGA+TGG - chr7_1:74990265-74990284 Msa1038190:intron 30.0%
!!! TTGTATTCCTTTTGGGATAA+AGG - chr7_1:74990344-74990363 Msa1038190:intron 30.0%
TAAAAGACATCAACGTGTTA+GGG + chr7_1:74990383-74990402 None:intergenic 30.0%
ATAAAAGACATCAACGTGTT+AGG + chr7_1:74990384-74990403 None:intergenic 30.0%
CATACATGTGATAACATATC+AGG - chr7_1:74990595-74990614 Msa1038190:intron 30.0%
AAGCTAAAATGCATCTGAAT+TGG + chr7_1:74991301-74991320 None:intergenic 30.0%
TTGCAAGAAGAGAACTCAAA+AGG - chr7_1:74987927-74987946 Msa1038190:three_prime_UTR 35.0%
TGCAAGAAGAGAACTCAAAA+GGG - chr7_1:74987928-74987947 Msa1038190:three_prime_UTR 35.0%
AGAGAGAGATATATAGCTAG+TGG - chr7_1:74988112-74988131 Msa1038190:CDS 35.0%
!! AACAGAACAGCTTTGTTTGT+GGG - chr7_1:74988512-74988531 Msa1038190:intron 35.0%
TAAAGTGAAGAGAGTAAAGC+AGG + chr7_1:74988618-74988637 None:intergenic 35.0%
!!! CACTCACTCTTTTTTTTGCT+TGG - chr7_1:74988994-74989013 Msa1038190:intron 35.0%
ATTATTAGTTGCTTCCCACT+TGG - chr7_1:74989044-74989063 Msa1038190:intron 35.0%
! AACCTGTTTGATGACATACA+AGG + chr7_1:74989262-74989281 None:intergenic 35.0%
AGAATAGTCTATGGCAAAGA+AGG + chr7_1:74989317-74989336 None:intergenic 35.0%
! CTTTTCTCGTGACCTAATTT+TGG - chr7_1:74989341-74989360 Msa1038190:intron 35.0%
CACTCTTTAAGCACCTAAAA+TGG - chr7_1:74989409-74989428 Msa1038190:intron 35.0%
TCATTGTGTCCCAAAATAAG+AGG - chr7_1:74989590-74989609 Msa1038190:intron 35.0%
CATTGTGTCCCAAAATAAGA+GGG - chr7_1:74989591-74989610 Msa1038190:intron 35.0%
GTAATTAGAAATGGTTGCCT+TGG - chr7_1:74989705-74989724 Msa1038190:intron 35.0%
! TATAAGACGTTAGTTTCCCA+AGG + chr7_1:74989725-74989744 None:intergenic 35.0%
AGAGTAAGCAAACTCCATTT+AGG + chr7_1:74989749-74989768 None:intergenic 35.0%
! ACTCTGAAAGTAAGCAAACT+AGG - chr7_1:74989764-74989783 Msa1038190:intron 35.0%
!! GTTTTAACACAACAACGGAA+TGG + chr7_1:74989862-74989881 None:intergenic 35.0%
GTGTTAAAACATGTGTGTCT+CGG - chr7_1:74989872-74989891 Msa1038190:intron 35.0%
AGTGGAAACCATTTAGAGAA+TGG - chr7_1:74989901-74989920 Msa1038190:intron 35.0%
AAACCATTTAGAGAATGGTG+AGG - chr7_1:74989906-74989925 Msa1038190:intron 35.0%
TAACCTCACCATTCTCTAAA+TGG + chr7_1:74989912-74989931 None:intergenic 35.0%
GATTGTAGAGAGTCAGAATT+CGG - chr7_1:74990131-74990150 Msa1038190:intron 35.0%
ATTGTAGAGAGTCAGAATTC+GGG - chr7_1:74990132-74990151 Msa1038190:intron 35.0%
TTCACATCCTTTATCCCAAA+AGG + chr7_1:74990354-74990373 None:intergenic 35.0%
GAAACTTCATATATAAGGCG+TGG - chr7_1:74990460-74990479 Msa1038190:intron 35.0%
AACATATCAGGAATCAAGCA+AGG - chr7_1:74990607-74990626 Msa1038190:intron 35.0%
ATGAGTTCTTCATCTGATCA+AGG - chr7_1:74991162-74991181 Msa1038190:five_prime_UTR 35.0%
! CATCAGAAGATTTGAGGTAA+AGG + chr7_1:74991218-74991237 None:intergenic 35.0%
TACCTCAAATCTTCTGATGA+TGG - chr7_1:74991219-74991238 Msa1038190:five_prime_UTR 35.0%
ACCTCAAATCTTCTGATGAT+GGG - chr7_1:74991220-74991239 Msa1038190:five_prime_UTR 35.0%
TTAGCTGTTCAGATCGAATT+TGG - chr7_1:74991256-74991275 Msa1038190:five_prime_UTR 35.0%
TCTAGATCAATTAGCTAGCT+AGG - chr7_1:74991363-74991382 Msa1038190:five_prime_UTR 35.0%
GAGTGAGAGACAAGAAAGAA+AGG - chr7_1:74987802-74987821 Msa1038190:three_prime_UTR 40.0%
! ACAAAGTTGAAGAAGTGCAG+AGG + chr7_1:74988024-74988043 None:intergenic 40.0%
AACCTGTTGAATGTGATCAG+TGG + chr7_1:74988216-74988235 None:intergenic 40.0%
GATATATGCAGACAGAAGCA+AGG + chr7_1:74988293-74988312 None:intergenic 40.0%
TTACACACAACACAACTTGC+TGG - chr7_1:74988445-74988464 Msa1038190:CDS 40.0%
TTCTACTGCTCAGCACAAAA+GGG + chr7_1:74988494-74988513 None:intergenic 40.0%
!! GAACAGAACAGCTTTGTTTG+TGG - chr7_1:74988511-74988530 Msa1038190:intron 40.0%
ATCTACCTAGCAAACAAGTG+CGG + chr7_1:74988663-74988682 None:intergenic 40.0%
ATGCTCTAGCTAATCCTTAG+TGG - chr7_1:74988681-74988700 Msa1038190:intron 40.0%
AAATGAATCCAACCAAAGGC+AGG + chr7_1:74988791-74988810 None:intergenic 40.0%
TAGATACCAAGTCTCCAAGT+GGG + chr7_1:74989061-74989080 None:intergenic 40.0%
CACCTTGTATGTCATCAAAC+AGG - chr7_1:74989257-74989276 Msa1038190:intron 40.0%
TATGGCAAAGAAGGTAGCAT+TGG + chr7_1:74989308-74989327 None:intergenic 40.0%
TGTCCCAAAATAAGAGGGAA+AGG - chr7_1:74989596-74989615 Msa1038190:intron 40.0%
!!! CAGCCTTTCCCTCTTATTTT+GGG + chr7_1:74989602-74989621 None:intergenic 40.0%
!! ACAGCCTTTCCCTCTTATTT+TGG + chr7_1:74989603-74989622 None:intergenic 40.0%
AAACGAATTAACCGGTGGAA+GGG + chr7_1:74990018-74990037 None:intergenic 40.0%
TATGCAAACGAATTAACCGG+TGG + chr7_1:74990023-74990042 None:intergenic 40.0%
ACTTGTTCTCATCCAAGTAC+TGG + chr7_1:74990098-74990117 None:intergenic 40.0%
ACACGTTGACAAGTCGATAT+TGG + chr7_1:74990539-74990558 None:intergenic 40.0%
TGTCAACGTGTCTGCTTATT+AGG - chr7_1:74990548-74990567 Msa1038190:intron 40.0%
GACACAACAACAACAGCTAA+TGG - chr7_1:74990882-74990901 Msa1038190:intron 40.0%
! GGTTTGCACAGAAGTCTTAT+GGG - chr7_1:74991111-74991130 Msa1038190:CDS 40.0%
TCCCATCATCAGAAGATTTG+AGG + chr7_1:74991224-74991243 None:intergenic 40.0%
!! AGAGAGAGAGAGAGAGCATT+GGG + chr7_1:74987835-74987854 None:intergenic 45.0%
GGAAGATCCAAAGGAAACAC+AGG + chr7_1:74988003-74988022 None:intergenic 45.0%
AAGTGCAGAGGAAGATCCAA+AGG + chr7_1:74988012-74988031 None:intergenic 45.0%
GGTGACGTTGTTTGGATAGT+AGG + chr7_1:74988195-74988214 None:intergenic 45.0%
! TGATCAGTGGTGACGTTGTT+TGG + chr7_1:74988203-74988222 None:intergenic 45.0%
CACCACTGATCACATTCAAC+AGG - chr7_1:74988211-74988230 Msa1038190:CDS 45.0%
GTTCTACTGCTCAGCACAAA+AGG + chr7_1:74988495-74988514 None:intergenic 45.0%
GTGAAGAGAGTAAAGCAGGT+AGG + chr7_1:74988614-74988633 None:intergenic 45.0%
TATACCCGCACTTGTTTGCT+AGG - chr7_1:74988655-74988674 Msa1038190:intron 45.0%
TCTACCTAGCAAACAAGTGC+GGG + chr7_1:74988662-74988681 None:intergenic 45.0%
GGATGGGTGAGTTATAGAGT+GGG + chr7_1:74988765-74988784 None:intergenic 45.0%
GTAGATACCAAGTCTCCAAG+TGG + chr7_1:74989062-74989081 None:intergenic 45.0%
TTTGTCACTATCCCTTCCAC+CGG - chr7_1:74990004-74990023 Msa1038190:intron 45.0%
CAAACGAATTAACCGGTGGA+AGG + chr7_1:74990019-74990038 None:intergenic 45.0%
TACGTAGCAGCATCAGAAGA+TGG + chr7_1:74990302-74990321 None:intergenic 45.0%
GAGAATCAGCTATTGCAGCT+AGG + chr7_1:74990653-74990672 None:intergenic 45.0%
!! TGCTGTTGAAGTGCTGAGTA+AGG + chr7_1:74990952-74990971 None:intergenic 45.0%
GCACTTCAACAGCATCAACT+TGG - chr7_1:74990958-74990977 Msa1038190:intron 45.0%
CTTCAACAGCATCAACTTGG+AGG - chr7_1:74990961-74990980 Msa1038190:intron 45.0%
AGCCTGTAGCAATATGAACG+TGG - chr7_1:74991020-74991039 Msa1038190:intron 45.0%
GCCTGTAGCAATATGAACGT+GGG - chr7_1:74991021-74991040 Msa1038190:intron 45.0%
TCCCACGTTCATATTGCTAC+AGG + chr7_1:74991025-74991044 None:intergenic 45.0%
TGTAGCAATATGAACGTGGG+AGG - chr7_1:74991024-74991043 Msa1038190:intron 45.0%
AGGAGGTAGTAGCTCAACAT+TGG - chr7_1:74991044-74991063 Msa1038190:intron 45.0%
GGAGGTAGTAGCTCAACATT+GGG - chr7_1:74991045-74991064 Msa1038190:intron 45.0%
AGTAGCTCAACATTGGGTTC+TGG - chr7_1:74991051-74991070 Msa1038190:intron 45.0%
GGGTTTGCACAGAAGTCTTA+TGG - chr7_1:74991110-74991129 Msa1038190:CDS 45.0%
! TTGCACAGAAGTCTTATGGG+AGG - chr7_1:74991114-74991133 Msa1038190:CDS 45.0%
! AGAAGTCTTATGGGAGGTAG+TGG - chr7_1:74991120-74991139 Msa1038190:exon 45.0%
AGTGGCAAGCAACAAGAGAT+TGG - chr7_1:74991138-74991157 Msa1038190:exon 45.0%
GTGGCAAGCAACAAGAGATT+GGG - chr7_1:74991139-74991158 Msa1038190:five_prime_UTR 45.0%
TCTTCATCTGATCAAGGTCG+AGG - chr7_1:74991168-74991187 Msa1038190:five_prime_UTR 45.0%
!! AAAATAAAATAAAAAAATGA+AGG + chr7_1:74988320-74988339 None:intergenic 5.0%
!! AATATAATAGTAATAAATAA+AGG + chr7_1:74988586-74988605 None:intergenic 5.0%
!! AGAGAGAGAGCATTGGGGTT+GGG + chr7_1:74987829-74987848 None:intergenic 50.0%
!! GAGAGAGAGAGAGAGCATTG+GGG + chr7_1:74987834-74987853 None:intergenic 50.0%
! GAGAGAGAGAGAGAGAGCAT+TGG + chr7_1:74987836-74987855 None:intergenic 50.0%
ACCTGCACCTGTGTTTCCTT+TGG - chr7_1:74987993-74988012 Msa1038190:three_prime_UTR 50.0%
TCCAAAGGAAACACAGGTGC+AGG + chr7_1:74987997-74988016 None:intergenic 50.0%
GGATAGTAGGCTGCCATCAT+GGG + chr7_1:74988182-74988201 None:intergenic 50.0%
TGGATAGTAGGCTGCCATCA+TGG + chr7_1:74988183-74988202 None:intergenic 50.0%
TGGCATCTTTCTGTGCTTCC+TGG - chr7_1:74988465-74988484 Msa1038190:CDS 50.0%
GGCATCTTTCTGTGCTTCCT+GGG - chr7_1:74988466-74988485 Msa1038190:CDS 50.0%
GCATCTTTCTGTGCTTCCTG+GGG - chr7_1:74988467-74988486 Msa1038190:intron 50.0%
CATCTTTCTGTGCTTCCTGG+GGG - chr7_1:74988468-74988487 Msa1038190:intron 50.0%
ACATAAGGCAGCAGCCACTA+AGG + chr7_1:74988698-74988717 None:intergenic 50.0%
GGGATGGGTGAGTTATAGAG+TGG + chr7_1:74988766-74988785 None:intergenic 50.0%
AATCCAACCAAAGGCAGGCA+GGG + chr7_1:74988786-74988805 None:intergenic 50.0%
TTATCTCAGGTAGGAGCAGC+AGG + chr7_1:74988840-74988859 None:intergenic 50.0%
TTGCTTCCCACTTGGAGACT+TGG - chr7_1:74989052-74989071 Msa1038190:intron 50.0%
! GGCAAAGAAGGTAGCATTGG+TGG + chr7_1:74989305-74989324 None:intergenic 50.0%
AAATGTTAACGAGTGCCCCC+AGG - chr7_1:74989378-74989397 Msa1038190:intron 50.0%
AATGTTAACGAGTGCCCCCA+GGG - chr7_1:74989379-74989398 Msa1038190:intron 50.0%
TGTGTGTCTCGGCTCTTAAG+TGG - chr7_1:74989883-74989902 Msa1038190:intron 50.0%
! GGTTGGGTTGCTGAAGTGAA+GGG - chr7_1:74990423-74990442 Msa1038190:intron 50.0%
! TGCGTGTGTTTCTACCTGAC+CGG + chr7_1:74990697-74990716 None:intergenic 50.0%
ATGGTGTAGCAGTACCCTTC+TGG - chr7_1:74990796-74990815 Msa1038190:intron 50.0%
CTGTTGCTGCGCGAATAGAA+GGG + chr7_1:74990920-74990939 None:intergenic 50.0%
CAACAGCATCAACTTGGAGG+CGG - chr7_1:74990964-74990983 Msa1038190:intron 50.0%
AGCAATATGAACGTGGGAGG+AGG - chr7_1:74991027-74991046 Msa1038190:intron 50.0%
! AGCTCAACATTGGGTTCTGG+TGG - chr7_1:74991054-74991073 Msa1038190:intron 50.0%
! TCAACATTGGGTTCTGGTGG+TGG - chr7_1:74991057-74991076 Msa1038190:intron 50.0%
! CAACATTGGGTTCTGGTGGT+GGG - chr7_1:74991058-74991077 Msa1038190:CDS 50.0%
TCATCTGATCAAGGTCGAGG+CGG - chr7_1:74991171-74991190 Msa1038190:five_prime_UTR 50.0%
!! GAGAGAGAGCATTGGGGTTG+GGG + chr7_1:74987828-74987847 None:intergenic 55.0%
!! GAGAGAGAGAGCATTGGGGT+TGG + chr7_1:74987830-74987849 None:intergenic 55.0%
! TCATGGGCTGCATCTGCATC+AGG + chr7_1:74988166-74988185 None:intergenic 55.0%
GATGCAGATGCAGCCCATGA+TGG - chr7_1:74988166-74988185 Msa1038190:CDS 55.0%
TAGAGTGGGCACAGTGCAAC+TGG + chr7_1:74988751-74988770 None:intergenic 55.0%
AACCAAAGGCAGGCAGGGAT+GGG + chr7_1:74988781-74988800 None:intergenic 55.0%
GAATCCAACCAAAGGCAGGC+AGG + chr7_1:74988787-74988806 None:intergenic 55.0%
ATGTTAACGAGTGCCCCCAG+GGG - chr7_1:74989380-74989399 Msa1038190:intron 55.0%
! CGGTTGGGTTGCTGAAGTGA+AGG - chr7_1:74990422-74990441 Msa1038190:intron 55.0%
! TGTTTCTACCTGACCGGGCA+TGG + chr7_1:74990691-74990710 None:intergenic 55.0%
! GCGTGTGTTTCTACCTGACC+GGG + chr7_1:74990696-74990715 None:intergenic 55.0%
GTGTAGCAGTACCCTTCTGG+TGG - chr7_1:74990799-74990818 Msa1038190:intron 55.0%
TAGCAGTACCCTTCTGGTGG+TGG - chr7_1:74990802-74990821 Msa1038190:intron 55.0%
GCATCACTCCACCACCAGAA+GGG + chr7_1:74990813-74990832 None:intergenic 55.0%
TGCATCACTCCACCACCAGA+AGG + chr7_1:74990814-74990833 None:intergenic 55.0%
!! TTCTGGTGGTGGAGTGATGC+AGG - chr7_1:74990813-74990832 Msa1038190:intron 55.0%
!! TCTGGTGGTGGAGTGATGCA+GGG - chr7_1:74990814-74990833 Msa1038190:intron 55.0%
TTGCTGCGCGAATAGAAGGG+AGG + chr7_1:74990917-74990936 None:intergenic 55.0%
GCTGTTGCTGCGCGAATAGA+AGG + chr7_1:74990921-74990940 None:intergenic 55.0%
GGGTTTCCTGACTTCATCCG+CGG - chr7_1:74991078-74991097 Msa1038190:CDS 55.0%
TTTCCTGACTTCATCCGCGG+TGG - chr7_1:74991081-74991100 Msa1038190:CDS 55.0%
CAACCAAAGGCAGGCAGGGA+TGG + chr7_1:74988782-74988801 None:intergenic 60.0%
CATCCCTGCCTGCCTTTGGT+TGG - chr7_1:74988780-74988799 Msa1038190:intron 60.0%
!! TAAAGAGTGCCCCAGCCCCT+GGG + chr7_1:74989398-74989417 None:intergenic 60.0%
!! TTAAAGAGTGCCCCAGCCCC+TGG + chr7_1:74989399-74989418 None:intergenic 60.0%
CCTCAACCACCAACCATGCC+CGG - chr7_1:74990675-74990694 Msa1038190:intron 60.0%
TCTACCTGACCGGGCATGGT+TGG + chr7_1:74990687-74990706 None:intergenic 60.0%
ATGCAGGGTCAGCAGCAGCA+GGG - chr7_1:74990829-74990848 Msa1038190:intron 60.0%
! GGGAGGAGCACACTACATGC+AGG - chr7_1:74990849-74990868 Msa1038190:intron 60.0%
CAGCATCAACTTGGAGGCGG+TGG - chr7_1:74990967-74990986 Msa1038190:intron 60.0%
CTTGGAGGCGGTGGAACTTC+AGG - chr7_1:74990976-74990995 Msa1038190:intron 60.0%
TTCATCCGCGGTGGAGGAGA+GGG - chr7_1:74991090-74991109 Msa1038190:CDS 60.0%
TCTGATCAAGGTCGAGGCGG+CGG - chr7_1:74991174-74991193 Msa1038190:five_prime_UTR 60.0%
CTCAGCACAAAAGGGCCCCC+AGG + chr7_1:74988486-74988505 None:intergenic 65.0%
CACCCATCCCTGCCTGCCTT+TGG - chr7_1:74988776-74988795 Msa1038190:intron 65.0%
!! AAAGAGTGCCCCAGCCCCTG+GGG + chr7_1:74989397-74989416 None:intergenic 65.0%
!! CCGGGCATGGTTGGTGGTTG+AGG + chr7_1:74990678-74990697 None:intergenic 65.0%
ACCACCAACCATGCCCGGTC+AGG - chr7_1:74990680-74990699 Msa1038190:intron 65.0%
ACCTGACCGGGCATGGTTGG+TGG + chr7_1:74990684-74990703 None:intergenic 65.0%
GATGCAGGGTCAGCAGCAGC+AGG - chr7_1:74990828-74990847 Msa1038190:intron 65.0%
CCTCCACCGCGGATGAAGTC+AGG + chr7_1:74991087-74991106 None:intergenic 65.0%
CCTGACTTCATCCGCGGTGG+AGG - chr7_1:74991084-74991103 Msa1038190:CDS 65.0%
CTTCATCCGCGGTGGAGGAG+AGG - chr7_1:74991089-74991108 Msa1038190:CDS 65.0%
GCAAACCCTCTCCTCCACCG+CGG + chr7_1:74991098-74991117 None:intergenic 65.0%
TAACGAGTGCCCCCAGGGGC+TGG - chr7_1:74989384-74989403 Msa1038190:intron 70.0%
AACGAGTGCCCCCAGGGGCT+GGG - chr7_1:74989385-74989404 Msa1038190:intron 70.0%
!! AAGAGTGCCCCAGCCCCTGG+GGG + chr7_1:74989396-74989415 None:intergenic 70.0%
CAGGGTCAGCAGCAGCAGGG+AGG - chr7_1:74990832-74990851 Msa1038190:intron 70.0%
GATCAAGGTCGAGGCGGCGG+TGG - chr7_1:74991177-74991196 Msa1038190:five_prime_UTR 70.0%
ACGAGTGCCCCCAGGGGCTG+GGG - chr7_1:74989386-74989405 Msa1038190:intron 75.0%
GGTCGAGGCGGCGGTGGTGA+AGG - chr7_1:74991183-74991202 Msa1038190:five_prime_UTR 75.0%
CGAGGCGGCGGTGGTGAAGG+CGG - chr7_1:74991186-74991205 Msa1038190:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74987780 74991510 74987780 ID=Msa1038190;Name=Msa1038190
chr7_1 mRNA 74987780 74991510 74987780 ID=Msa1038190-mRNA-1;Parent=Msa1038190;Name=Msa1038190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=372|0.66|0.75|1|1|1|4|262|228
chr7_1 exon 74987780 74988485 74987780 ID=Msa1038190-mRNA-1:exon:19091;Parent=Msa1038190-mRNA-1
chr7_1 exon 74988589 74988673 74988589 ID=Msa1038190-mRNA-1:exon:19090;Parent=Msa1038190-mRNA-1
chr7_1 exon 74989115 74989191 74989115 ID=Msa1038190-mRNA-1:exon:19089;Parent=Msa1038190-mRNA-1
chr7_1 exon 74991058 74991510 74991058 ID=Msa1038190-mRNA-1:exon:19088;Parent=Msa1038190-mRNA-1
chr7_1 five_prime_UTR 74991139 74991510 74991139 ID=Msa1038190-mRNA-1:five_prime_utr;Parent=Msa1038190-mRNA-1
chr7_1 CDS 74991058 74991138 74991058 ID=Msa1038190-mRNA-1:cds;Parent=Msa1038190-mRNA-1
chr7_1 CDS 74989115 74989191 74989115 ID=Msa1038190-mRNA-1:cds;Parent=Msa1038190-mRNA-1
chr7_1 CDS 74988589 74988673 74988589 ID=Msa1038190-mRNA-1:cds;Parent=Msa1038190-mRNA-1
chr7_1 CDS 74988042 74988485 74988042 ID=Msa1038190-mRNA-1:cds;Parent=Msa1038190-mRNA-1
chr7_1 three_prime_UTR 74987780 74988041 74987780 ID=Msa1038190-mRNA-1:three_prime_utr;Parent=Msa1038190-mRNA-1
Gene Sequence

>Msa1038190

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTACTATCCAAACAACGTCACCACTGATCACATTCAACAGTACTTGGATGAGAACAAGTCTTTGATTCTGAAGATTGTAGAGAGTCAGAATTCGGGCAAGCTTAACGAGTGTGCCGAGAATCAAGCAAGGCTACAGAGAAATCTCATGTACCTAGCTGCAATAGCTGATTCTCAACCTCAACCACCAACCATGCCCGGTCAGCAGTACCCTTCTGGTGGTGGAGTGATGCAGGGTCAGCAGCAGCAGGGAGGAGCACACTACATGCAGGCTCAGCAGATGACACAACAACAACAGCTAATGGCTGCACGCTCCTCCCTTCTATTCGCGCAGCAACAGCAGCAGCAACCTTACTCAGCACTTCAACAGCATCAACTTGGAGGCGGTGGAACTTCAGGACTACACATGATGCAAAGCGAAGCCTGTAGCAATATGAACGTGGGAGGAGGTAGTAGCTCAACATTGGGTTCTGGTGGTGGGTTTCCTGACTTCATCCGCGGTGGAGGAGAGGGTTTGCACAGAAGTCTTATGGGAGGTAGTGGCAAGCAACAAGAGATTGGGATGAGTTCTTCATCTGATCAAGGTCGAGGCGGCGGTGGTGAAGGCGGCGAAAACCTTTACCTCAAATCTTCTGATGATGGGAACTAG
Protein sequence

>Msa1038190

MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQPPTMPGQQYPSGGGVMQGQQQQGGAHYMQAQQMTQQQQLMAARSSLLFAQQQQQQPYSALQQHQLGGGGTSGLHMMQSEACSNMNVGGGSSSTLGSGGGFPDFIRGGGEGLHRSLMGGSGKQQEIGMSSSSDQGRGGGGEGGENLYLKSSDDGN*