AlfalfaGEDB | Msa0032180

M. sativa cultivar zhongmu-4 / Msa0032180

KEGG: -
GO: GO:0003002 GO:0003674 GO:0003712 GO:0003713 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0009955 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141
PFAM: PF05030.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032180	XP_003590996.1	76.126	222	42	5	1	222	1	211	1.16e-82	255

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032180	sp\|Q8L8A5\|GIF1_ARATH	87.805	82	9	1	1	82	1	81	1.17e-44	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032180	G7I6V2	76.126	222	42	5	1	222	1	211	5.56e-83	255

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032180	Msa0032460	0.832746	7.926552e-56	-8.615850e-47
Msa0032180	Msa0080610	0.808497	3.009253e-50	-8.615850e-47
Msa0032180	Msa0117610	0.805018	1.634638e-49	-8.615850e-47
Msa0032180	Msa0172590	0.880508	5.183578e-70	-8.615850e-47
Msa0032180	Msa0173290	0.827560	1.462871e-54	-8.615850e-47
Msa0032180	Msa0185960	0.826343	2.858140e-54	-8.615850e-47
Msa0032180	Msa0389950	0.805494	1.299372e-49	-8.615850e-47
Msa0032180	Msa0481140	0.835865	1.308656e-56	-8.615850e-47
Msa0032180	Msa0483910	0.816500	5.356696e-52	-8.615850e-47
Msa0032180	Msa0520260	0.807658	4.540412e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032180	MtrunA17_Chr1g0190481	76.126	222	42	5	1	222	1	211	1.07e-86	255
Msa0032180	MtrunA17_Chr7g0274341	55.794	233	86	8	1	222	1	227	1.73e-56	179
Msa0032180	MtrunA17_Chr8g0346111	57.647	85	34	2	3	86	2	85	5.64e-25	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032180	AT5G28640.1	87.805	82	9	1	1	82	1	81	1.19e-45	151
Msa0032180	AT4G00850.1	64.384	73	23	2	7	77	6	77	1.26e-24	97.4
Msa0032180	AT4G00850.2	64.384	73	23	2	7	77	6	77	1.75e-24	97.1
Msa0032180	AT1G01160.1	61.644	73	26	2	2	73	3	74	2.86e-21	87.8
Msa0032180	AT1G01160.2	42.453	106	27	2	2	73	3	108	3.91e-16	74.7

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Find 80 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATAGGGGTGTACC+TGG	0.491985	1_1:+59149653	None:intergenic
AACAGAGAAACAGAAGAGTC+TGG	0.538077	1_1:+59150548	None:intergenic
AACATTCTGAAAATAGATAG+GGG	0.619418	1_1:+59149644	None:intergenic
AATGAGGTTGCTCAATTTCA+AGG	0.409443	1_1:-59148539	Msa0032180:three_prime_UTR
AATTCATCGTTAGGTACTGG+AGG	0.617510	1_1:-59148951	Msa0032180:CDS
ACAACATTCTGAAAATAGAT+AGG	0.344860	1_1:+59149642	None:intergenic
ACATTAAGTTAAGTAGCTGA+AGG	0.653572	1_1:-59148708	Msa0032180:three_prime_UTR
ACATTGCAGTACCCTTCAAG+TGG	0.608273	1_1:-59149175	Msa0032180:intron
ACCACCTACTATGCCTGGCC+AGG	0.560989	1_1:-59149671	Msa0032180:CDS
ACCCTTTACCTAAAATCTTC+TGG	0.314141	1_1:-59148807	Msa0032180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAAGTTCAAATCCAAACAA+AGG	+	chr1_1:59148706-59148725	None:intergenic	30.0%
CCAATGGAATTGAAACAAAA+AGG	+	chr1_1:59148860-59148879	None:intergenic	30.0%
TTCAACAATCTTGAGAATCA+AGG	+	chr1_1:59149019-59149038	None:intergenic	30.0%
AGATCAAAATTCTGCTTACT+TGG	-	chr1_1:59149375-59149394	Msa0032180:intron	30.0%
ATAATTTCAGGAACCAATCA+AGG	-	chr1_1:59149439-59149458	Msa0032180:intron	30.0%
ACAAATCAATCATTGTTGTG+AGG	+	chr1_1:59149598-59149617	None:intergenic	30.0%
ACATAATAAGAGCTAGAGTT+TGG	+	chr1_1:59149661-59149680	None:intergenic	30.0%
AAAACATCTAGACACACAAT+AGG	+	chr1_1:59149757-59149776	None:intergenic	30.0%
GGGTTTATATTTAGACACAT+AGG	-	chr1_1:59149930-59149949	Msa0032180:intron	30.0%
GATGACACAACAACAATTAA+TGG	-	chr1_1:59150079-59150098	Msa0032180:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	59148524	59150681	59148524	ID=Msa0032180;Name=Msa0032180
chr1_1	mRNA	59148524	59150681	59148524	ID=Msa0032180-mRNA-1;Parent=Msa0032180;Name=Msa0032180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=229\|0.33\|0.5\|1\|1\|1\|4\|270\|222
chr1_1	exon	59148524	59149188	59148524	ID=Msa0032180-mRNA-1:exon:18195;Parent=Msa0032180-mRNA-1
chr1_1	exon	59149644	59149756	59149644	ID=Msa0032180-mRNA-1:exon:18194;Parent=Msa0032180-mRNA-1
chr1_1	exon	59150132	59150211	59150132	ID=Msa0032180-mRNA-1:exon:18193;Parent=Msa0032180-mRNA-1
chr1_1	exon	59150372	59150681	59150372	ID=Msa0032180-mRNA-1:exon:18192;Parent=Msa0032180-mRNA-1
chr1_1	five_prime_UTR	59150453	59150681	59150453	ID=Msa0032180-mRNA-1:five_prime_utr;Parent=Msa0032180-mRNA-1
chr1_1	CDS	59150372	59150452	59150372	ID=Msa0032180-mRNA-1:cds;Parent=Msa0032180-mRNA-1
chr1_1	CDS	59150132	59150211	59150132	ID=Msa0032180-mRNA-1:cds;Parent=Msa0032180-mRNA-1
chr1_1	CDS	59149644	59149756	59149644	ID=Msa0032180-mRNA-1:cds;Parent=Msa0032180-mRNA-1
chr1_1	CDS	59148794	59149188	59148794	ID=Msa0032180-mRNA-1:cds;Parent=Msa0032180-mRNA-1
chr1_1	three_prime_UTR	59148524	59148793	59148524	ID=Msa0032180-mRNA-1:three_prime_utr;Parent=Msa0032180-mRNA-1

Gene Sequence

>Msa0032180

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTACTATCCTAACAACGTCACTACTGATCATATTCAACAGCAGTATCTTGATGAGAACAAGTCCTTGATTCTCAAGATTGTTGAAAGCCAGAACTCTGGCAAGCTCACCGAGTGTGCTGAGAACCAATCAAGGCTGCAGAGAAATCTCATGTACCTAGCTGCAATAGCTGATTCTCAACCCCAACCACCTACTATGCCTGGCCAGGTACACCCCTATCTATTTTCAGAATGTTTACCCTTCAAGTGGAATGATGCAGCAGGGAGGACACTACATGCAGGCTCAACAAGCTCAGCAGATGACACAACAACAATTAATGGCTGCACGTTCCTCTCTTATGTATGCTCAACAGCTTCAACAGCAGCAGCCTTGCAAAGCCAACTCGGTATGAATTCGAGTGGAAGTCAAGGCCTTCACATGTTGCATAGTGAAGGGGCTAACGTTGGAGGCAATTCATCGTTAGGTACTGGAGGTTTTCCTGATTTTGGTCGTAGCTCGGCTGGTGATGGTTTGCACGGTAGTGGCAAGCAAGACATTGGAAGTGCTGATGGCCGCGGTGGAAGCTCTAGTGGTCACTCTGGTGATGGCGGCGAAACCCTTTACCTAAAATCTTCTGGTGATGGGAATTAG

Protein sequence

>Msa0032180

MQQHLMQMQPMMAAYYPNNVTTDHIQQQYLDENKSLILKIVESQNSGKLTECAENQSRLQRNLMYLAAIADSQPQPPTMPGQVHPYLFSECLPFKWNDAAGRTLHAGSTSSADDTTTINGCTFLSYVCSTASTAAALQSQLGMNSSGSQGLHMLHSEGANVGGNSSLGTGGFPDFGRSSAGDGLHGSGKQDIGSADGRGGSSSGHSGDGGETLYLKSSGDGN*