Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042490 | XP_003624840.1 | 87.715 | 407 | 27 | 2 | 1 | 403 | 1 | 388 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042490 | sp|Q8L727|GSTT2_ARATH | 31.227 | 269 | 159 | 6 | 97 | 340 | 246 | 513 | 4.55e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042490 | G7L3S4 | 87.715 | 407 | 27 | 2 | 1 | 403 | 1 | 388 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1042490 | Msa1072610 | 0.981905 | 9.692853e-154 | -8.615850e-47 |
| Msa1042490 | Msa1117550 | 0.917855 | 3.192183e-86 | -8.615850e-47 |
| Msa1042490 | Msa1124110 | 0.807935 | 3.963621e-50 | -8.615850e-47 |
| Msa1042490 | Msa1168950 | 0.808804 | 2.587430e-50 | -8.615850e-47 |
| Msa1042490 | Msa1169040 | 0.800374 | 1.485387e-48 | -8.615850e-47 |
| Msa1042490 | Msa1276660 | 0.806074 | 9.812149e-50 | -8.615850e-47 |
| Msa1042490 | Msa1369150 | 0.811100 | 8.290235e-51 | -8.615850e-47 |
| Msa0292400 | Msa1042490 | 0.801884 | 7.293689e-49 | -8.615850e-47 |
| Msa0357990 | Msa1042490 | 0.801027 | 1.093047e-48 | -8.615850e-47 |
| Msa0861510 | Msa1042490 | 0.824306 | 8.670480e-54 | -8.615850e-47 |
| Msa0861530 | Msa1042490 | 0.809410 | 1.918824e-50 | -8.615850e-47 |
| Msa0861600 | Msa1042490 | 0.826045 | 3.364195e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042490 | MtrunA17_Chr7g0255021 | 87.715 | 407 | 27 | 2 | 1 | 403 | 1 | 388 | 0.0 | 732 |
| Msa1042490 | MtrunA17_Chr6g0460311 | 51.064 | 94 | 24 | 3 | 1 | 94 | 23 | 94 | 1.67e-18 | 82.0 |
| Msa1042490 | MtrunA17_Chr4g0043791 | 46.835 | 79 | 22 | 2 | 17 | 95 | 66 | 124 | 1.30e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042490 | AT5G41240.1 | 31.227 | 269 | 159 | 6 | 97 | 340 | 246 | 513 | 4.63e-27 | 114 |
| Msa1042490 | AT5G41220.1 | 36.158 | 177 | 96 | 5 | 108 | 267 | 249 | 425 | 7.44e-24 | 104 |
| Msa1042490 | AT5G41220.3 | 36.158 | 177 | 96 | 5 | 108 | 267 | 191 | 367 | 7.46e-24 | 104 |
| Msa1042490 | AT5G41220.2 | 36.158 | 177 | 96 | 5 | 108 | 267 | 199 | 375 | 7.64e-24 | 104 |
| Msa1042490 | AT3G47680.1 | 39.370 | 127 | 74 | 2 | 118 | 242 | 44 | 169 | 1.82e-21 | 94.7 |
| Msa1042490 | AT3G56490.1 | 52.128 | 94 | 21 | 3 | 1 | 94 | 19 | 88 | 2.37e-19 | 84.7 |
| Msa1042490 | AT1G31160.1 | 44.872 | 78 | 23 | 2 | 17 | 94 | 71 | 128 | 1.89e-12 | 66.2 |
| Msa1042490 | AT1G31160.2 | 43.590 | 78 | 24 | 2 | 17 | 94 | 71 | 128 | 2.76e-12 | 64.7 |
Find 102 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGGAATTATTACAATA+TGG | 0.179127 | 7_1:-80440160 | None:intergenic |
| CCACATTTGTTCTTTGTCTA+TGG | 0.182582 | 7_1:+80438190 | Msa1042490:exon |
| TTTGGCAGGTCCTTGCCTTT+AGG | 0.192355 | 7_1:+80440114 | Msa1042490:intron |
| TTGGCAGGTCCTTGCCTTTA+GGG | 0.242587 | 7_1:+80440115 | Msa1042490:intron |
| AATGATGTATTTGACCATTT+AGG | 0.247849 | 7_1:-80442419 | None:intergenic |
| TGAGTTGGAGTTCCTCTTTA+AGG | 0.259351 | 7_1:+80442823 | Msa1042490:CDS |
| TGCCTCCGCAGCTGCATTCT+TGG | 0.287331 | 7_1:-80442120 | None:intergenic |
| ATCAAAGAGTAGATTCCTTT+TGG | 0.297331 | 7_1:+80442144 | Msa1042490:CDS |
| TGACAGGAGTATTATCAAAA+AGG | 0.309485 | 7_1:+80438700 | Msa1042490:CDS |
| ACAATATGGGGAGGAGCTTC+AGG | 0.329232 | 7_1:-80440146 | None:intergenic |
| GCCTCCGCAGCTGCATTCTT+GGG | 0.331691 | 7_1:-80442119 | None:intergenic |
| TGTTGAAAGATGAACCTAAA+TGG | 0.343738 | 7_1:+80442405 | Msa1042490:CDS |
| CCTACAGCGGTTTGTCTAAC+GGG | 0.353092 | 7_1:+80442542 | Msa1042490:CDS |
| CTTCCTTCAACATGGTGGTT+TGG | 0.360514 | 7_1:-80439585 | None:intergenic |
| TCCTCATAAAACACAGTAGA+AGG | 0.377289 | 7_1:-80438728 | None:intergenic |
| AGCAGCTGCACCGTTGCATT+TGG | 0.381157 | 7_1:+80439551 | Msa1042490:CDS |
| AGCATAGTTCATAAATTTGT+AGG | 0.381452 | 7_1:+80442257 | Msa1042490:CDS |
| GTAATATTATTCAACCCAAC+TGG | 0.383376 | 7_1:-80442002 | None:intergenic |
| AGAACCAAGATTTCTGCTTC+AGG | 0.391537 | 7_1:+80442458 | Msa1042490:CDS |
| CTCATGATCTCGTTGTTGTC+TGG | 0.395467 | 7_1:-80442864 | None:intergenic |
| TTTCGGAATTATTACAATAT+GGG | 0.399163 | 7_1:-80440159 | None:intergenic |
| TTCCTCTTTAAGGATATATC+CGG | 0.407777 | 7_1:+80442833 | Msa1042490:CDS |
| CAACGGTGCAGCTGCTGATA+AGG | 0.410196 | 7_1:-80439544 | None:intergenic |
| TCGTTGAGATCCTCCTCAAT+GGG | 0.411473 | 7_1:-80443262 | None:intergenic |
| AGTTCTCGTCATGGCAGAAA+TGG | 0.413601 | 7_1:+80442736 | Msa1042490:CDS |
| GTCAACCCATCTCTAGCTTT+CGG | 0.415328 | 7_1:-80440176 | None:intergenic |
| ATACTCAACCACTTCTAATC+TGG | 0.425691 | 7_1:+80442484 | Msa1042490:CDS |
| TGCTCCTGAAGCAGAAATCT+TGG | 0.437645 | 7_1:-80442462 | None:intergenic |
| ATTCTTAATTCTTAGCCAAA+AGG | 0.441749 | 7_1:-80442159 | None:intergenic |
| AAGAAAGGGAAAATCAAAAT+CGG | 0.456154 | 7_1:+80442580 | Msa1042490:CDS |
| GGAGAAAGAGTTGAATCTAA+AGG | 0.457496 | 7_1:+80442790 | Msa1042490:CDS |
| ATCGTTGAGATCCTCCTCAA+TGG | 0.460759 | 7_1:-80443263 | None:intergenic |
| GCGTTGTATTCACAACTTGA+TGG | 0.470794 | 7_1:-80442512 | None:intergenic |
| ACACTCCCCTCGGTTTGAAA+TGG | 0.473048 | 7_1:-80442202 | None:intergenic |
| GACAGACGTAGAGGAAAGAA+AGG | 0.477930 | 7_1:+80442565 | Msa1042490:CDS |
| GAGGCAGAGAGAGTAGTTGC+AGG | 0.486175 | 7_1:-80438233 | None:intergenic |
| TGGGTTGACCGGTCTATCTA+AGG | 0.486756 | 7_1:+80440190 | Msa1042490:CDS |
| ATGTGATGAACAGGTTTGAC+AGG | 0.487322 | 7_1:+80438684 | Msa1042490:intron |
| TTGTTGTCTGGCTGTCATCC+CGG | 0.489120 | 7_1:-80442852 | None:intergenic |
| ACACTTTATTATCAAGATGA+AGG | 0.490019 | 7_1:+80442350 | Msa1042490:CDS |
| AAAGGAGAGAGAGTTTGAGT+TGG | 0.492472 | 7_1:+80442808 | Msa1042490:CDS |
| AGATGAACAAAATAAGTTGA+AGG | 0.494225 | 7_1:+80442769 | Msa1042490:CDS |
| TAGCTCTGAGTCTGACATCA+TGG | 0.497740 | 7_1:+80442316 | Msa1042490:CDS |
| ATGAGAACTTTATCTTCCCC+AGG | 0.502700 | 7_1:-80442077 | None:intergenic |
| TTCGGAATTATTACAATATG+GGG | 0.506959 | 7_1:-80440158 | None:intergenic |
| TGGGAACGATGAGCCATGCT+TGG | 0.513548 | 7_1:-80442100 | None:intergenic |
| TGGTCAAATACATCATTTGA+AGG | 0.523432 | 7_1:+80442425 | Msa1042490:CDS |
| ACCTACAGCGGTTTGTCTAA+CGG | 0.528467 | 7_1:+80442541 | Msa1042490:CDS |
| CAACTGGGCTTGAAAACTGT+GGG | 0.529312 | 7_1:-80441986 | None:intergenic |
| TTCAGGAGCTATATCCCTAA+AGG | 0.532898 | 7_1:-80440129 | None:intergenic |
| TTTATTTGTGACACTCCCCT+CGG | 0.536783 | 7_1:-80442212 | None:intergenic |
| GCATAGTTCATAAATTTGTA+GGG | 0.549641 | 7_1:+80442258 | Msa1042490:CDS |
| AAAGAACAAGGTTTACCCCT+GGG | 0.552641 | 7_1:+80442060 | Msa1042490:CDS |
| TCAAACAGAGGCAGAAGTAG+AGG | 0.552685 | 7_1:+80442631 | Msa1042490:CDS |
| AAAATCGGAAGAAACATCTT+CGG | 0.555404 | 7_1:+80442595 | Msa1042490:CDS |
| GATAGAGTTTAGCCCCATTG+AGG | 0.556734 | 7_1:+80443249 | Msa1042490:CDS |
| TCCCGGATATATCCTTAAAG+AGG | 0.562142 | 7_1:-80442835 | None:intergenic |
| TCCCAAGAATGCAGCTGCGG+AGG | 0.562688 | 7_1:+80442118 | Msa1042490:CDS |
| TCCTCTTTAAGGATATATCC+GGG | 0.564537 | 7_1:+80442834 | Msa1042490:CDS |
| TTGAGGAGGATCTCAACGAT+GGG | 0.564739 | 7_1:+80443266 | Msa1042490:CDS |
| TAATATTATTCAACCCAACT+GGG | 0.569197 | 7_1:-80442001 | None:intergenic |
| TCGCGGCCATTTCAAACCGA+GGG | 0.574944 | 7_1:+80442196 | Msa1042490:CDS |
| AAAGCTAGAGATGGGTTGAC+CGG | 0.576749 | 7_1:+80440179 | Msa1042490:CDS |
| AGCTCTGAGTCTGACATCAT+GGG | 0.578396 | 7_1:+80442317 | Msa1042490:CDS |
| ATCGCGGCCATTTCAAACCG+AGG | 0.583777 | 7_1:+80442195 | Msa1042490:CDS |
| ATAATTCCGAAAGCTAGAGA+TGG | 0.589633 | 7_1:+80440170 | Msa1042490:CDS |
| GGAATTATTACAATATGGGG+AGG | 0.589697 | 7_1:-80440155 | None:intergenic |
| TAATTCCGAAAGCTAGAGAT+GGG | 0.593326 | 7_1:+80440171 | Msa1042490:CDS |
| AGTTCAAGTTAGAGTATGCA+TGG | 0.599942 | 7_1:+80442378 | Msa1042490:CDS |
| TGAGAACTTTATCTTCCCCA+GGG | 0.604635 | 7_1:-80442076 | None:intergenic |
| GAGCTATATCCCTAAAGGCA+AGG | 0.606414 | 7_1:-80440124 | None:intergenic |
| AGAGTTTAGCCCCATTGAGG+AGG | 0.609577 | 7_1:+80443252 | Msa1042490:CDS |
| AAAAGAACAAGGTTTACCCC+TGG | 0.612783 | 7_1:+80442059 | Msa1042490:CDS |
| GAATTGAAAGCTTACATGGT+GGG | 0.613026 | 7_1:-80438269 | None:intergenic |
| ATAAAGTTCTCATCCAAGCA+TGG | 0.618728 | 7_1:+80442087 | Msa1042490:CDS |
| CCATAGACAAAGAACAAATG+TGG | 0.619217 | 7_1:-80438190 | None:intergenic |
| ACAGAGGCAGAAGTAGAGGA+AGG | 0.621119 | 7_1:+80442635 | Msa1042490:CDS |
| CCCGTTAGACAAACCGCTGT+AGG | 0.621500 | 7_1:-80442542 | None:intergenic |
| AGAGAACTCGCCAAATGCAA+CGG | 0.627513 | 7_1:-80439561 | None:intergenic |
| CCAACTGGGCTTGAAAACTG+TGG | 0.629875 | 7_1:-80441987 | None:intergenic |
| AAAGACAAAAGTTCTCGTCA+TGG | 0.630789 | 7_1:+80442727 | Msa1042490:CDS |
| GGGTTGAATAATATTACACT+CGG | 0.631705 | 7_1:+80442008 | Msa1042490:CDS |
| GGTGGGAGGATCAGATTCAG+AGG | 0.633506 | 7_1:-80438252 | None:intergenic |
| ACAGACGTAGAGGAAAGAAA+GGG | 0.633644 | 7_1:+80442566 | Msa1042490:CDS |
| CGTTCCCAAGAATGCAGCTG+CGG | 0.637770 | 7_1:+80442115 | Msa1042490:CDS |
| ATTGAGGAGGATCTCAACGA+TGG | 0.640821 | 7_1:+80443265 | Msa1042490:CDS |
| AATAATTACAACGAGCATCG+CGG | 0.652454 | 7_1:+80442179 | Msa1042490:CDS |
| GCTTTGTCTTTGTCAAACAG+AGG | 0.658520 | 7_1:+80442619 | Msa1042490:CDS |
| TGGCGTGTCCAGATTAGAAG+TGG | 0.660830 | 7_1:-80442492 | None:intergenic |
| TTGAAAGCTTACATGGTGGG+AGG | 0.666328 | 7_1:-80438266 | None:intergenic |
| TGTCACAAATAAAATCGCGA+TGG | 0.669419 | 7_1:+80442222 | Msa1042490:CDS |
| CTACAGCGGTTTGTCTAACG+GGG | 0.672077 | 7_1:+80442543 | Msa1042490:CDS |
| TCAAATACATCATTTGAAGG+AGG | 0.672832 | 7_1:+80442428 | Msa1042490:CDS |
| CGCGGCCATTTCAAACCGAG+GGG | 0.678447 | 7_1:+80442197 | Msa1042490:CDS |
| TCTAACGGGGACAGACGTAG+AGG | 0.684957 | 7_1:+80442556 | Msa1042490:CDS |
| AACTGGGCTTGAAAACTGTG+GGG | 0.689956 | 7_1:-80441985 | None:intergenic |
| CGTTGAGATCCTCCTCAATG+GGG | 0.694772 | 7_1:-80443261 | None:intergenic |
| CAACGCAGCATCACCTACAG+CGG | 0.696498 | 7_1:+80442529 | Msa1042490:CDS |
| AAGAACAAGGTTTACCCCTG+GGG | 0.699394 | 7_1:+80442061 | Msa1042490:CDS |
| TGAGGAGGATCTCAACGATG+GGG | 0.712304 | 7_1:+80443267 | Msa1042490:CDS |
| GAGAACTTTATCTTCCCCAG+GGG | 0.729630 | 7_1:-80442075 | None:intergenic |
| TCAAGTTAGAGTATGCATGG+CGG | 0.805545 | 7_1:+80442381 | Msa1042490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATATATGAATATT+AGG | - | chr7_1:80438658-80438677 | None:intergenic | 10.0% |
| !! | AATAGAAAATAAAAAATGTA+AGG | - | chr7_1:80440096-80440115 | None:intergenic | 10.0% |
| !!! | TACATTTTTTATTTTCTATT+TGG | + | chr7_1:80440096-80440115 | Msa1042490:intron | 10.0% |
| !!! | TTTTAAAAAACTTACTATTT+AGG | + | chr7_1:80440264-80440283 | Msa1042490:intron | 10.0% |
| !! | TTAAATACTATGAATTATTT+AGG | + | chr7_1:80440713-80440732 | Msa1042490:intron | 10.0% |
| !! | ACAATAGTAAAATTATAATA+AGG | - | chr7_1:80441285-80441304 | None:intergenic | 10.0% |
| !! | TAAATAGATTTGAATATATA+GGG | - | chr7_1:80441587-80441606 | None:intergenic | 10.0% |
| !! | ATAAATAGATTTGAATATAT+AGG | - | chr7_1:80441588-80441607 | None:intergenic | 10.0% |
| !! | AAACAAAATCACAATTAAAA+GGG | - | chr7_1:80438621-80438640 | None:intergenic | 15.0% |
| !! | TAAACAAAATCACAATTAAA+AGG | - | chr7_1:80438622-80438641 | None:intergenic | 15.0% |
| !! | TAAAACAGCTATTAAAAAAA+CGG | + | chr7_1:80438947-80438966 | Msa1042490:intron | 15.0% |
| !! | ATTTATTACTAGAAAATGAT+AGG | + | chr7_1:80439302-80439321 | Msa1042490:intron | 15.0% |
| !!! | AATATGTTGATAAAGTATAA+AGG | - | chr7_1:80440317-80440336 | None:intergenic | 15.0% |
| !! | ATTATCTTCTAGATATAAAT+TGG | + | chr7_1:80440507-80440526 | Msa1042490:intron | 15.0% |
| !! | TTATCTTCTAGATATAAATT+GGG | + | chr7_1:80440508-80440527 | Msa1042490:intron | 15.0% |
| !!! | CACAATCAAAATTTAAAATT+CGG | - | chr7_1:80440653-80440672 | None:intergenic | 15.0% |
| !! | AATCTAATTTGACAATTTAT+CGG | + | chr7_1:80440819-80440838 | Msa1042490:intron | 15.0% |
| !! | AATCAGTAATCAATATTATA+AGG | + | chr7_1:80441196-80441215 | Msa1042490:intron | 15.0% |
| !! | GTAAAATTATAATAAGGAAT+AGG | - | chr7_1:80441279-80441298 | None:intergenic | 15.0% |
| !!! | CATCATTTTTTATTTTTCAT+TGG | + | chr7_1:80441837-80441856 | Msa1042490:intron | 15.0% |
| !!! | AATAACAGTTTTTTATCTAT+AGG | + | chr7_1:80443219-80443238 | Msa1042490:intron | 15.0% |
| !! | TCATAATGACAGAATTAAAA+GGG | - | chr7_1:80438351-80438370 | None:intergenic | 20.0% |
| !! | ATCATAATGACAGAATTAAA+AGG | - | chr7_1:80438352-80438371 | None:intergenic | 20.0% |
| !!! | ATAAAAATGCAAGCTTTAAA+GGG | - | chr7_1:80438397-80438416 | None:intergenic | 20.0% |
| !! | GTAAATCATATGTCATATAA+AGG | - | chr7_1:80438445-80438464 | None:intergenic | 20.0% |
| !!! | ATTTATCAGTGTATTTTATG+TGG | + | chr7_1:80438559-80438578 | Msa1042490:intron | 20.0% |
| !! | AACAAAATCACAATTAAAAG+GGG | - | chr7_1:80438620-80438639 | None:intergenic | 20.0% |
| !! | TTATTTATTATGTGATGAAC+AGG | + | chr7_1:80438675-80438694 | Msa1042490:intron | 20.0% |
| !!! | TTTAATAGCTGTTTTATCTT+TGG | - | chr7_1:80438943-80438962 | None:intergenic | 20.0% |
| !! | TTCTAGTAATAAATCCTTTA+CGG | - | chr7_1:80439296-80439315 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTTCTATTTGGC+AGG | + | chr7_1:80440100-80440119 | Msa1042490:intron | 20.0% |
| !! | TTTCGGAATTATTACAATAT+GGG | - | chr7_1:80440162-80440181 | None:intergenic | 20.0% |
| !!! | TCAACATATTGATAACATAA+AGG | + | chr7_1:80440327-80440346 | Msa1042490:intron | 20.0% |
| !! | GTTATTCATTCAAATCATTT+AGG | + | chr7_1:80440627-80440646 | Msa1042490:intron | 20.0% |
| !! | AATTGTAAAATGAATTGCTA+TGG | - | chr7_1:80440783-80440802 | None:intergenic | 20.0% |
| !!! | CAATTCATTTTACAATTATC+TGG | + | chr7_1:80440786-80440805 | Msa1042490:intron | 20.0% |
| !!! | ATTTTACAATTATCTGGTTT+GGG | + | chr7_1:80440792-80440811 | Msa1042490:intron | 20.0% |
| !! | TACCTTTGTAAAAGAAATAT+AGG | + | chr7_1:80440953-80440972 | Msa1042490:intron | 20.0% |
| !!! | TTCCTATATTTCTTTTACAA+AGG | - | chr7_1:80440958-80440977 | None:intergenic | 20.0% |
| !! | TTTGTAAAAGAAATATAGGA+AGG | + | chr7_1:80440957-80440976 | Msa1042490:intron | 20.0% |
| !!! | ATTGATTACTGATTTTCTTA+AGG | - | chr7_1:80441190-80441209 | None:intergenic | 20.0% |
| !!! | TTCTTGTGAATAGAAATTTT+GGG | + | chr7_1:80441359-80441378 | Msa1042490:intron | 20.0% |
| !! | ATTAACCAATATTTCAAATG+GGG | - | chr7_1:80441636-80441655 | None:intergenic | 20.0% |
| !! | CATTAACCAATATTTCAAAT+GGG | - | chr7_1:80441637-80441656 | None:intergenic | 20.0% |
| !! | ACATTAACCAATATTTCAAA+TGG | - | chr7_1:80441638-80441657 | None:intergenic | 20.0% |
| !!! | TTTATTATCGTATTGTTTTC+AGG | + | chr7_1:80441956-80441975 | Msa1042490:intron | 20.0% |
| !! | AATGTGATTAGAGAAAAATA+TGG | + | chr7_1:80442896-80442915 | Msa1042490:intron | 20.0% |
| !! | TAAAGTAACAATGTTAATCA+AGG | + | chr7_1:80442926-80442945 | Msa1042490:intron | 20.0% |
| !! | AAAGTAACAATGTTAATCAA+GGG | + | chr7_1:80442927-80442946 | Msa1042490:intron | 20.0% |
| !! | AGATAACATAAAAACTAGTT+TGG | - | chr7_1:80442987-80443006 | None:intergenic | 20.0% |
| !!! | GTTTTTTATCTATAGGATTA+CGG | + | chr7_1:80443226-80443245 | Msa1042490:intron | 20.0% |
| !!! | TTTTTTATCTATAGGATTAC+GGG | + | chr7_1:80443227-80443246 | Msa1042490:intron | 20.0% |
| ! | CATAATGACAGAATTAAAAG+GGG | - | chr7_1:80438350-80438369 | None:intergenic | 25.0% |
| ! | TTCTGTCATTATGATATCAT+AGG | + | chr7_1:80438357-80438376 | Msa1042490:intron | 25.0% |
| !! | CATAAAAATGCAAGCTTTAA+AGG | - | chr7_1:80438398-80438417 | None:intergenic | 25.0% |
| !! | TTTTATGTACTTAGGCTTAA+TGG | + | chr7_1:80438411-80438430 | Msa1042490:intron | 25.0% |
| ! | TTTATGTACTTAGGCTTAAT+GGG | + | chr7_1:80438412-80438431 | Msa1042490:intron | 25.0% |
| ! | ATACTTATCTGCTTCTATAA+TGG | + | chr7_1:80438483-80438502 | Msa1042490:intron | 25.0% |
| ! | AACGTAGAATAAATTAAGTG+AGG | - | chr7_1:80438794-80438813 | None:intergenic | 25.0% |
| !! | GTCGTATGTATATTTTTCTA+TGG | + | chr7_1:80438817-80438836 | Msa1042490:intron | 25.0% |
| !! | TGTATATTTTTCTATGGTTG+AGG | + | chr7_1:80438823-80438842 | Msa1042490:intron | 25.0% |
| !! | TGCATGTTGATTATGTAAAA+TGG | + | chr7_1:80438973-80438992 | Msa1042490:intron | 25.0% |
| ! | GATTATGTAAAATGGTTCAA+TGG | + | chr7_1:80438981-80439000 | Msa1042490:intron | 25.0% |
| ! | CATTTGCCTTTATAATAACA+TGG | - | chr7_1:80439011-80439030 | None:intergenic | 25.0% |
| ! | AAGTCAAGAAATGAAAAAGA+GGG | + | chr7_1:80439224-80439243 | Msa1042490:intron | 25.0% |
| ! | TCTAGTAATAAATCCTTTAC+GGG | - | chr7_1:80439295-80439314 | None:intergenic | 25.0% |
| !!! | TGAACAGTAACATTTTTTTG+GGG | - | chr7_1:80439377-80439396 | None:intergenic | 25.0% |
| !!! | CTGAACAGTAACATTTTTTT+GGG | - | chr7_1:80439378-80439397 | None:intergenic | 25.0% |
| ! | ATAAAATGCAAAATGATGCA+TGG | - | chr7_1:80439662-80439681 | None:intergenic | 25.0% |
| ! | TAAGGATTATCAATTGCTAT+GGG | - | chr7_1:80440078-80440097 | None:intergenic | 25.0% |
| ! | TTCGGAATTATTACAATATG+GGG | - | chr7_1:80440161-80440180 | None:intergenic | 25.0% |
| ! | CTTTCGGAATTATTACAATA+TGG | - | chr7_1:80440163-80440182 | None:intergenic | 25.0% |
| !! | TGTTGATAAAGTATAAAGGA+AGG | - | chr7_1:80440313-80440332 | None:intergenic | 25.0% |
| !! | TAAATTGGGCTACATATTTT+TGG | + | chr7_1:80440522-80440541 | Msa1042490:intron | 25.0% |
| !!! | TTAAATTTTGATTGTGCCTT+TGG | + | chr7_1:80440657-80440676 | Msa1042490:intron | 25.0% |
| !! | ATGAATATGAAGTAGACTTT+TGG | + | chr7_1:80440737-80440756 | Msa1042490:intron | 25.0% |
| !! | CATTTTACAATTATCTGGTT+TGG | + | chr7_1:80440791-80440810 | Msa1042490:intron | 25.0% |
| ! | ATATCATGTCTATGTATCAA+CGG | - | chr7_1:80440861-80440880 | None:intergenic | 25.0% |
| ! | TGATATAGTTCTTCATTTAG+TGG | + | chr7_1:80440875-80440894 | Msa1042490:intron | 25.0% |
| !!! | ATTTTCTTAAGGTGTTTTCA+GGG | - | chr7_1:80441179-80441198 | None:intergenic | 25.0% |
| ! | CAAAATTTCTATTCACAAGA+AGG | - | chr7_1:80441360-80441379 | None:intergenic | 25.0% |
| !! | CTTCTTGTGAATAGAAATTT+TGG | + | chr7_1:80441358-80441377 | Msa1042490:intron | 25.0% |
| ! | TTCAAGAATAGCTTAATTGA+AGG | - | chr7_1:80441741-80441760 | None:intergenic | 25.0% |
| ! | TAATATTATTCAACCCAACT+GGG | - | chr7_1:80442004-80442023 | None:intergenic | 25.0% |
| ! | ATTCTTAATTCTTAGCCAAA+AGG | - | chr7_1:80442162-80442181 | None:intergenic | 25.0% |
| ! | AGCATAGTTCATAAATTTGT+AGG | + | chr7_1:80442257-80442276 | Msa1042490:CDS | 25.0% |
| ! | GCATAGTTCATAAATTTGTA+GGG | + | chr7_1:80442258-80442277 | Msa1042490:CDS | 25.0% |
| ! | ACACTTTATTATCAAGATGA+AGG | + | chr7_1:80442350-80442369 | Msa1042490:CDS | 25.0% |
| ! | AATGATGTATTTGACCATTT+AGG | - | chr7_1:80442422-80442441 | None:intergenic | 25.0% |
| ! | AAGAAAGGGAAAATCAAAAT+CGG | + | chr7_1:80442580-80442599 | Msa1042490:CDS | 25.0% |
| !!! | TCAACTTATTTTGTTCATCT+TGG | - | chr7_1:80442769-80442788 | None:intergenic | 25.0% |
| !! | AGATGAACAAAATAAGTTGA+AGG | + | chr7_1:80442769-80442788 | Msa1042490:CDS | 25.0% |
| !! | TTTTAATCAGGTGTAACAAA+TGG | + | chr7_1:80443163-80443182 | Msa1042490:intron | 25.0% |
| ! | GATATCAACAAAATTTGACT+TGG | + | chr7_1:80443188-80443207 | Msa1042490:intron | 25.0% |
| AATGGAATTGAAAGCTTACA+TGG | - | chr7_1:80438276-80438295 | None:intergenic | 30.0% | |
| AGATCAAAAAATTCAGAGGT+TGG | - | chr7_1:80438319-80438338 | None:intergenic | 30.0% | |
| ATGCAGATCAAAAAATTCAG+AGG | - | chr7_1:80438323-80438342 | None:intergenic | 30.0% | |
| ! | GCTTGCATTTTTATGTACTT+AGG | + | chr7_1:80438403-80438422 | Msa1042490:intron | 30.0% |
| GGAATAGGAAATTAAGAATG+TGG | - | chr7_1:80438599-80438618 | None:intergenic | 30.0% | |
| ATCACAATTAAAAGGGGAAT+AGG | - | chr7_1:80438614-80438633 | None:intergenic | 30.0% | |
| !! | TGACAGGAGTATTATCAAAA+AGG | + | chr7_1:80438700-80438719 | Msa1042490:CDS | 30.0% |
| TGTGACTGTGATATTGATAT+AGG | + | chr7_1:80438847-80438866 | Msa1042490:intron | 30.0% | |
| GTGACTGTGATATTGATATA+GGG | + | chr7_1:80438848-80438867 | Msa1042490:intron | 30.0% | |
| GGACATCCATGTTATTATAA+AGG | + | chr7_1:80439002-80439021 | Msa1042490:intron | 30.0% | |
| TTATTAACATTTGCCCTTGA+GGG | - | chr7_1:80439044-80439063 | None:intergenic | 30.0% | |
| TTTATTAACATTTGCCCTTG+AGG | - | chr7_1:80439045-80439064 | None:intergenic | 30.0% | |
| GAAGTCAAGAAATGAAAAAG+AGG | + | chr7_1:80439223-80439242 | Msa1042490:intron | 30.0% | |
| AAATGGGTCATAGAAGTAAT+TGG | + | chr7_1:80439252-80439271 | Msa1042490:intron | 30.0% | |
| !!! | GCTGAACAGTAACATTTTTT+TGG | - | chr7_1:80439379-80439398 | None:intergenic | 30.0% |
| !!! | GTTTTTTAACTCATTTGACC+CGG | - | chr7_1:80439473-80439492 | None:intergenic | 30.0% |
| GACTATACCATAATAGATTC+CGG | - | chr7_1:80439734-80439753 | None:intergenic | 30.0% | |
| GAATCTATTATGGTATAGTC+TGG | + | chr7_1:80439734-80439753 | Msa1042490:intron | 30.0% | |
| ACCTTGTGTTAAATGTCAAT+AGG | + | chr7_1:80439972-80439991 | Msa1042490:intron | 30.0% | |
| TTCACCATTAGCTATTATTC+TGG | + | chr7_1:80440026-80440045 | Msa1042490:intron | 30.0% | |
| TTGACCAGAATAATAGCTAA+TGG | - | chr7_1:80440033-80440052 | None:intergenic | 30.0% | |
| GTAAGGATTATCAATTGCTA+TGG | - | chr7_1:80440079-80440098 | None:intergenic | 30.0% | |
| GAAAAATACCTTAGATAGAC+CGG | - | chr7_1:80440201-80440220 | None:intergenic | 30.0% | |
| !! | CAATGTTTTCTAGCATTGAA+AGG | - | chr7_1:80440478-80440497 | None:intergenic | 30.0% |
| TATCATGTCTATGTATCAAC+GGG | - | chr7_1:80440860-80440879 | None:intergenic | 30.0% | |
| ! | GAATATAGTTGATGTTCTCT+AGG | + | chr7_1:80440899-80440918 | Msa1042490:intron | 30.0% |
| !! | CATACTCCGAAATCATTTTT+GGG | + | chr7_1:80440987-80441006 | Msa1042490:intron | 30.0% |
| !! | ATACTCCGAAATCATTTTTG+GGG | + | chr7_1:80440988-80441007 | Msa1042490:intron | 30.0% |
| ATGATAAATCATACTTCGTG+TGG | - | chr7_1:80441120-80441139 | None:intergenic | 30.0% | |
| ! | ACATTTTGCTAACAAGATGT+GGG | - | chr7_1:80441150-80441169 | None:intergenic | 30.0% |
| ! | TACATTTTGCTAACAAGATG+TGG | - | chr7_1:80441151-80441170 | None:intergenic | 30.0% |
| !! | GATTTTCTTAAGGTGTTTTC+AGG | - | chr7_1:80441180-80441199 | None:intergenic | 30.0% |
| !! | ATAAGGTATTTTTCCCTGTT+AGG | + | chr7_1:80441213-80441232 | Msa1042490:intron | 30.0% |
| !! | ACTATTTTTCTAAGCAGTGT+TGG | + | chr7_1:80441306-80441325 | Msa1042490:intron | 30.0% |
| !! | ATTGAGCTCAGTTTGTTAAA+AGG | - | chr7_1:80441423-80441442 | None:intergenic | 30.0% |
| ! | AACAATGAATGATAGTGTGA+TGG | - | chr7_1:80441560-80441579 | None:intergenic | 30.0% |
| ! | TATTGGTTAATGTGTGTTGA+TGG | + | chr7_1:80441645-80441664 | Msa1042490:intron | 30.0% |
| ATAGCTTAATTGAAGGAGTT+CGG | - | chr7_1:80441734-80441753 | None:intergenic | 30.0% | |
| !! | TATTTGTAGTTGATGATCCA+AGG | - | chr7_1:80441893-80441912 | None:intergenic | 30.0% |
| GTAATATTATTCAACCCAAC+TGG | - | chr7_1:80442005-80442024 | None:intergenic | 30.0% | |
| GGGTTGAATAATATTACACT+CGG | + | chr7_1:80442008-80442027 | Msa1042490:CDS | 30.0% | |
| AACGACAATCAACTCAAAAA+AGG | + | chr7_1:80442036-80442055 | Msa1042490:CDS | 30.0% | |
| CTCAAAAAAGGAAAAGAACA+AGG | + | chr7_1:80442048-80442067 | Msa1042490:CDS | 30.0% | |
| ! | ATCAAAGAGTAGATTCCTTT+TGG | + | chr7_1:80442144-80442163 | Msa1042490:CDS | 30.0% |
| !! | ACCACTTTTCTTTTTCTCAA+AGG | - | chr7_1:80442297-80442316 | None:intergenic | 30.0% |
| TGTTGAAAGATGAACCTAAA+TGG | + | chr7_1:80442405-80442424 | Msa1042490:CDS | 30.0% | |
| TGGTCAAATACATCATTTGA+AGG | + | chr7_1:80442425-80442444 | Msa1042490:CDS | 30.0% | |
| TCAAATACATCATTTGAAGG+AGG | + | chr7_1:80442428-80442447 | Msa1042490:CDS | 30.0% | |
| AAAATCGGAAGAAACATCTT+CGG | + | chr7_1:80442595-80442614 | Msa1042490:CDS | 30.0% | |
| ! | TTCCTCTTTAAGGATATATC+CGG | + | chr7_1:80442833-80442852 | Msa1042490:CDS | 30.0% |
| AATACAACTACTGTGAACAA+TGG | - | chr7_1:80442962-80442981 | None:intergenic | 30.0% | |
| ATACATCCTTAAACTATGTC+AGG | + | chr7_1:80443041-80443060 | Msa1042490:intron | 30.0% | |
| TACATCCTTAAACTATGTCA+GGG | + | chr7_1:80443042-80443061 | Msa1042490:intron | 30.0% | |
| AAAAACCCTGACATAGTTTA+AGG | - | chr7_1:80443050-80443069 | None:intergenic | 30.0% | |
| !!! | CTTTTGATTTGAAGTCTTCA+TGG | + | chr7_1:80443094-80443113 | Msa1042490:intron | 30.0% |
| AACTGCAGAGTACAATATTA+TGG | + | chr7_1:80443126-80443145 | Msa1042490:intron | 30.0% | |
| GTACAATATTATGGATGTTG+CGG | + | chr7_1:80443135-80443154 | Msa1042490:intron | 30.0% | |
| TACAATATTATGGATGTTGC+GGG | + | chr7_1:80443136-80443155 | Msa1042490:intron | 30.0% | |
| CCATAGACAAAGAACAAATG+TGG | - | chr7_1:80438193-80438212 | None:intergenic | 35.0% | |
| CCACATTTGTTCTTTGTCTA+TGG | + | chr7_1:80438190-80438209 | Msa1042490:exon | 35.0% | |
| GAATTGAAAGCTTACATGGT+GGG | - | chr7_1:80438272-80438291 | None:intergenic | 35.0% | |
| AAACAGGTGAAGAAAGAGAA+TGG | - | chr7_1:80438294-80438313 | None:intergenic | 35.0% | |
| ! | TCCTTCTACTGTGTTTTATG+AGG | + | chr7_1:80438727-80438746 | Msa1042490:CDS | 35.0% |
| TCCTCATAAAACACAGTAGA+AGG | - | chr7_1:80438731-80438750 | None:intergenic | 35.0% | |
| ! | TGTGTTTTATGAGGATGATG+AGG | + | chr7_1:80438736-80438755 | Msa1042490:CDS | 35.0% |
| TGTCTGAGTCTGATGATTTA+TGG | + | chr7_1:80438764-80438783 | Msa1042490:intron | 35.0% | |
| CAAAAAGAGCAACTTTGCAT+TGG | - | chr7_1:80439136-80439155 | None:intergenic | 35.0% | |
| TGAAAAAGAGGGCTAGAAAA+TGG | + | chr7_1:80439235-80439254 | Msa1042490:intron | 35.0% | |
| GAAAAAGAGGGCTAGAAAAT+GGG | + | chr7_1:80439236-80439255 | Msa1042490:intron | 35.0% | |
| AGTTAAAAAACCTTCACCAC+TGG | + | chr7_1:80439482-80439501 | Msa1042490:intron | 35.0% | |
| ATAGATTCCGGTGCAAAATA+TGG | - | chr7_1:80439722-80439741 | None:intergenic | 35.0% | |
| ! | TTTTGCACCGGAATCTATTA+TGG | + | chr7_1:80439724-80439743 | Msa1042490:intron | 35.0% |
| !!! | ATAGTCTGGCACTTGTTTTA+AGG | + | chr7_1:80439748-80439767 | Msa1042490:intron | 35.0% |
| !!! | TAGTCTGGCACTTGTTTTAA+GGG | + | chr7_1:80439749-80439768 | Msa1042490:intron | 35.0% |
| ATGTTGTCAAATAGCAGTTG+TGG | - | chr7_1:80439913-80439932 | None:intergenic | 35.0% | |
| ! | TCCTCAAGTTTTGCAAGTTA+GGG | - | chr7_1:80439937-80439956 | None:intergenic | 35.0% |
| ! | TTCCTCAAGTTTTGCAAGTT+AGG | - | chr7_1:80439938-80439957 | None:intergenic | 35.0% |
| GCCTATTGACATTTAACACA+AGG | - | chr7_1:80439976-80439995 | None:intergenic | 35.0% | |
| GGAATTATTACAATATGGGG+AGG | - | chr7_1:80440158-80440177 | None:intergenic | 35.0% | |
| ATAATTCCGAAAGCTAGAGA+TGG | + | chr7_1:80440170-80440189 | Msa1042490:CDS | 35.0% | |
| TAATTCCGAAAGCTAGAGAT+GGG | + | chr7_1:80440171-80440190 | Msa1042490:CDS | 35.0% | |
| CTTTATAAGTCTACTGCATG+TGG | + | chr7_1:80440605-80440624 | Msa1042490:intron | 35.0% | |
| GATAAATACGTGGTATCCAA+AGG | - | chr7_1:80440676-80440695 | None:intergenic | 35.0% | |
| TTGGATACCACGTATTTATC+AGG | + | chr7_1:80440676-80440695 | Msa1042490:intron | 35.0% | |
| ATCATGTCTATGTATCAACG+GGG | - | chr7_1:80440859-80440878 | None:intergenic | 35.0% | |
| CCAAAAATGATTTCGGAGTA+TGG | - | chr7_1:80440989-80441008 | None:intergenic | 35.0% | |
| ! | CCATACTCCGAAATCATTTT+TGG | + | chr7_1:80440986-80441005 | Msa1042490:intron | 35.0% |
| ! | CATTTTGCTAACAAGATGTG+GGG | - | chr7_1:80441149-80441168 | None:intergenic | 35.0% |
| ACTTGACTACTTCATCATAC+AGG | - | chr7_1:80441459-80441478 | None:intergenic | 35.0% | |
| AAATGCCTTCTATTCTGTCA+AGG | - | chr7_1:80441497-80441516 | None:intergenic | 35.0% | |
| AGATATATTTCGGCGATTGA+TGG | - | chr7_1:80441531-80441550 | None:intergenic | 35.0% | |
| !! | ATGGCGGACAAGATATATTT+CGG | - | chr7_1:80441541-80441560 | None:intergenic | 35.0% |
| ! | AATGAATGATAGTGTGATGG+CGG | - | chr7_1:80441557-80441576 | None:intergenic | 35.0% |
| TATTTCAAATGGGGTGGAAA+TGG | - | chr7_1:80441627-80441646 | None:intergenic | 35.0% | |
| ! | TTCCACCCCATTTGAAATAT+TGG | + | chr7_1:80441628-80441647 | Msa1042490:intron | 35.0% |
| AACCAATATTTCAAATGGGG+TGG | - | chr7_1:80441633-80441652 | None:intergenic | 35.0% | |
| CATCTACATTGTCATGCTTA+TGG | + | chr7_1:80441708-80441727 | Msa1042490:intron | 35.0% | |
| CTATTCTTGAAGAGAGCAAA+CGG | + | chr7_1:80441750-80441769 | Msa1042490:intron | 35.0% | |
| ATACATATCTTCCCAAACCT+TGG | + | chr7_1:80441873-80441892 | Msa1042490:intron | 35.0% | |
| !! | TAGTTGATGATCCAAGGTTT+GGG | - | chr7_1:80441887-80441906 | None:intergenic | 35.0% |
| ATAAAGTTCTCATCCAAGCA+TGG | + | chr7_1:80442087-80442106 | Msa1042490:CDS | 35.0% | |
| ! | AATAATTACAACGAGCATCG+CGG | + | chr7_1:80442179-80442198 | Msa1042490:CDS | 35.0% |
| TGTCACAAATAAAATCGCGA+TGG | + | chr7_1:80442222-80442241 | Msa1042490:CDS | 35.0% | |
| ! | GCCTTTGAGAAAAAGAAAAG+TGG | + | chr7_1:80442293-80442312 | Msa1042490:CDS | 35.0% |
| ! | AGTTCAAGTTAGAGTATGCA+TGG | + | chr7_1:80442378-80442397 | Msa1042490:CDS | 35.0% |
| ATACTCAACCACTTCTAATC+TGG | + | chr7_1:80442484-80442503 | Msa1042490:CDS | 35.0% | |
| ! | ATGACGAGAACTTTTGTCTT+TGG | - | chr7_1:80442728-80442747 | None:intergenic | 35.0% |
| AAAGACAAAAGTTCTCGTCA+TGG | + | chr7_1:80442727-80442746 | Msa1042490:CDS | 35.0% | |
| GGAGAAAGAGTTGAATCTAA+AGG | + | chr7_1:80442790-80442809 | Msa1042490:CDS | 35.0% | |
| ! | TCCTCTTTAAGGATATATCC+GGG | + | chr7_1:80442834-80442853 | Msa1042490:CDS | 35.0% |
| ACAATGTTAATCAAGGGTCA+AGG | + | chr7_1:80442933-80442952 | Msa1042490:intron | 35.0% | |
| !!! | AGGGTTTTTTTGTGCAATGT+TGG | + | chr7_1:80443061-80443080 | Msa1042490:intron | 35.0% |
| GGAATTGAAAGCTTACATGG+TGG | - | chr7_1:80438273-80438292 | None:intergenic | 40.0% | |
| AATTCAGAGGTTGGAGAAAC+AGG | - | chr7_1:80438310-80438329 | None:intergenic | 40.0% | |
| ATGTGATGAACAGGTTTGAC+AGG | + | chr7_1:80438684-80438703 | Msa1042490:intron | 40.0% | |
| TTCCTTAACATGTGCCCTTA+GGG | + | chr7_1:80439158-80439177 | Msa1042490:intron | 40.0% | |
| GCTGCAAATCAGCTTGTATT+CGG | + | chr7_1:80439414-80439433 | Msa1042490:intron | 40.0% | |
| CTGCAAATCAGCTTGTATTC+GGG | + | chr7_1:80439415-80439434 | Msa1042490:intron | 40.0% | |
| ATGCCTATCTTCCTTCAACA+TGG | - | chr7_1:80439596-80439615 | None:intergenic | 40.0% | |
| TTGAAGGAAGATAGGCATGT+GGG | + | chr7_1:80439598-80439617 | Msa1042490:intron | 40.0% | |
| TGATGCATGGTTGTCAAGAT+CGG | - | chr7_1:80439649-80439668 | None:intergenic | 40.0% | |
| TGGCGATCTTTCAACTGTTT+AGG | - | chr7_1:80439702-80439721 | None:intergenic | 40.0% | |
| ! | AAGATCGCCATATTTTGCAC+CGG | + | chr7_1:80439712-80439731 | Msa1042490:intron | 40.0% |
| CTAACTCATGCTGTCAATAG+CGG | + | chr7_1:80439785-80439804 | Msa1042490:intron | 40.0% | |
| AAACTCCGTGCTATATAACG+TGG | + | chr7_1:80439815-80439834 | Msa1042490:intron | 40.0% | |
| AACTCCGTGCTATATAACGT+GGG | + | chr7_1:80439816-80439835 | Msa1042490:intron | 40.0% | |
| CAATCCCACGTTATATAGCA+CGG | - | chr7_1:80439823-80439842 | None:intergenic | 40.0% | |
| TTGTCAAATAGCAGTTGTGG+CGG | - | chr7_1:80439910-80439929 | None:intergenic | 40.0% | |
| ! | CCTCAAGTTTTGCAAGTTAG+GGG | - | chr7_1:80439936-80439955 | None:intergenic | 40.0% |
| TTCAGGAGCTATATCCCTAA+AGG | - | chr7_1:80440132-80440151 | None:intergenic | 40.0% | |
| !! | GCATTGAAAGGTACTCTTTC+AGG | - | chr7_1:80440466-80440485 | None:intergenic | 40.0% |
| TGTGTGTCTGTGCCAAATTT+AGG | + | chr7_1:80440558-80440577 | Msa1042490:intron | 40.0% | |
| ACACTGTCCTGATAAATACG+TGG | - | chr7_1:80440686-80440705 | None:intergenic | 40.0% | |
| ATGATTTCGGAGTATGGCTA+TGG | - | chr7_1:80440983-80441002 | None:intergenic | 40.0% | |
| !!! | TCCGAAATCATTTTTGGGGT+TGG | + | chr7_1:80440992-80441011 | Msa1042490:intron | 40.0% |
| CCCAACCCCAAAAATGATTT+CGG | - | chr7_1:80440996-80441015 | None:intergenic | 40.0% | |
| !!! | CCGAAATCATTTTTGGGGTT+GGG | + | chr7_1:80440993-80441012 | Msa1042490:intron | 40.0% |
| !!! | CGAAATCATTTTTGGGGTTG+GGG | + | chr7_1:80440994-80441013 | Msa1042490:intron | 40.0% |
| GGTATTACCACCATACTACA+CGG | + | chr7_1:80441015-80441034 | Msa1042490:intron | 40.0% | |
| ! | TAGAGAGAAGTGCGCAATTA+AGG | - | chr7_1:80441054-80441073 | None:intergenic | 40.0% |
| CTTACATGAGAAAAGTAGCC+GGG | - | chr7_1:80441247-80441266 | None:intergenic | 40.0% | |
| CCTTACATGAGAAAAGTAGC+CGG | - | chr7_1:80441248-80441267 | None:intergenic | 40.0% | |
| TTCTATTCACAAGAAGGACC+AGG | - | chr7_1:80441354-80441373 | None:intergenic | 40.0% | |
| GTAGTCCTTGACAGAATAGA+AGG | + | chr7_1:80441489-80441508 | Msa1042490:intron | 40.0% | |
| !! | GTAGTTGATGATCCAAGGTT+TGG | - | chr7_1:80441888-80441907 | None:intergenic | 40.0% |
| AAAAGAACAAGGTTTACCCC+TGG | + | chr7_1:80442059-80442078 | Msa1042490:CDS | 40.0% | |
| AAAGAACAAGGTTTACCCCT+GGG | + | chr7_1:80442060-80442079 | Msa1042490:CDS | 40.0% | |
| TGAGAACTTTATCTTCCCCA+GGG | - | chr7_1:80442079-80442098 | None:intergenic | 40.0% | |
| ATGAGAACTTTATCTTCCCC+AGG | - | chr7_1:80442080-80442099 | None:intergenic | 40.0% | |
| TTTATTTGTGACACTCCCCT+CGG | - | chr7_1:80442215-80442234 | None:intergenic | 40.0% | |
| TCAAGTTAGAGTATGCATGG+CGG | + | chr7_1:80442381-80442400 | Msa1042490:CDS | 40.0% | |
| AGAACCAAGATTTCTGCTTC+AGG | + | chr7_1:80442458-80442477 | Msa1042490:CDS | 40.0% | |
| GCGTTGTATTCACAACTTGA+TGG | - | chr7_1:80442515-80442534 | None:intergenic | 40.0% | |
| ACAGACGTAGAGGAAAGAAA+GGG | + | chr7_1:80442566-80442585 | Msa1042490:CDS | 40.0% | |
| GCTTTGTCTTTGTCAAACAG+AGG | + | chr7_1:80442619-80442638 | Msa1042490:CDS | 40.0% | |
| AAAGGAGAGAGAGTTTGAGT+TGG | + | chr7_1:80442808-80442827 | Msa1042490:CDS | 40.0% | |
| ! | TGAGTTGGAGTTCCTCTTTA+AGG | + | chr7_1:80442823-80442842 | Msa1042490:CDS | 40.0% |
| TCCCGGATATATCCTTAAAG+AGG | - | chr7_1:80442838-80442857 | None:intergenic | 40.0% | |
| ! | TTGAAAGCTTACATGGTGGG+AGG | - | chr7_1:80438269-80438288 | None:intergenic | 45.0% |
| ! | AATGCTAACTTGTGCCCTCA+AGG | + | chr7_1:80439027-80439046 | Msa1042490:intron | 45.0% |
| ! | ATGCTAACTTGTGCCCTCAA+GGG | + | chr7_1:80439028-80439047 | Msa1042490:intron | 45.0% |
| GTTCCTTAACATGTGCCCTT+AGG | + | chr7_1:80439157-80439176 | Msa1042490:intron | 45.0% | |
| ! | CATGCTAACTTGTGCCCTAA+GGG | - | chr7_1:80439175-80439194 | None:intergenic | 45.0% |
| ! | TCATGCTAACTTGTGCCCTA+AGG | - | chr7_1:80439176-80439195 | None:intergenic | 45.0% |
| CTTTACGGGTTCAATGCTTC+AGG | - | chr7_1:80439281-80439300 | None:intergenic | 45.0% | |
| !! | CTGAAGCATTGAACCCGTAA+AGG | + | chr7_1:80439279-80439298 | Msa1042490:intron | 45.0% |
| GATAGGAGCAATTCCCATGT+CGG | + | chr7_1:80439319-80439338 | Msa1042490:intron | 45.0% | |
| ATAGGAGCAATTCCCATGTC+GGG | + | chr7_1:80439320-80439339 | Msa1042490:intron | 45.0% | |
| AGTTGATTACTCCCCGACAT+GGG | - | chr7_1:80439335-80439354 | None:intergenic | 45.0% | |
| ! | CTGATTTGCAGCACATACGA+GGG | - | chr7_1:80439406-80439425 | None:intergenic | 45.0% |
| ATTCGGGTCACAACCATGTT+AGG | + | chr7_1:80439431-80439450 | Msa1042490:intron | 45.0% | |
| ! | ACGGCACACTTTTCCTAACA+TGG | - | chr7_1:80439447-80439466 | None:intergenic | 45.0% |
| AACTCATTTGACCCGGTTCA+CGG | - | chr7_1:80439466-80439485 | None:intergenic | 45.0% | |
| AAGGAAGACTGCAAAAACGC+AGG | - | chr7_1:80439528-80439547 | None:intergenic | 45.0% | |
| AGAGAACTCGCCAAATGCAA+CGG | - | chr7_1:80439564-80439583 | None:intergenic | 45.0% | |
| CTACCAAACCACCATGTTGA+AGG | + | chr7_1:80439582-80439601 | Msa1042490:intron | 45.0% | |
| CTTCCTTCAACATGGTGGTT+TGG | - | chr7_1:80439588-80439607 | None:intergenic | 45.0% | |
| CCTATCTTCCTTCAACATGG+TGG | - | chr7_1:80439593-80439612 | None:intergenic | 45.0% | |
| CCACCATGTTGAAGGAAGAT+AGG | + | chr7_1:80439590-80439609 | Msa1042490:intron | 45.0% | |
| GTTGAAGGAAGATAGGCATG+TGG | + | chr7_1:80439597-80439616 | Msa1042490:intron | 45.0% | |
| GATGCATGGTTGTCAAGATC+GGG | - | chr7_1:80439648-80439667 | None:intergenic | 45.0% | |
| !!! | TTTTGAAGCACGACCTGTCA+TGG | - | chr7_1:80439861-80439880 | None:intergenic | 45.0% |
| CGTGCTTCAAAAATTGCCTG+TGG | + | chr7_1:80439869-80439888 | Msa1042490:intron | 45.0% | |
| CTTCAAAAATTGCCTGTGGC+AGG | + | chr7_1:80439873-80439892 | Msa1042490:intron | 45.0% | |
| ! | CCCCTAACTTGCAAAACTTG+AGG | + | chr7_1:80439933-80439952 | Msa1042490:intron | 45.0% |
| AAACCATGCTAGCCAAGTCT+TGG | - | chr7_1:80440008-80440027 | None:intergenic | 45.0% | |
| GAGCTATATCCCTAAAGGCA+AGG | - | chr7_1:80440127-80440146 | None:intergenic | 45.0% | |
| !! | GTCAACCCATCTCTAGCTTT+CGG | - | chr7_1:80440179-80440198 | None:intergenic | 45.0% |
| !! | AAAGCTAGAGATGGGTTGAC+CGG | + | chr7_1:80440179-80440198 | Msa1042490:CDS | 45.0% |
| GCCAAATTTAGGCAGTGTTG+CGG | + | chr7_1:80440569-80440588 | Msa1042490:intron | 45.0% | |
| ACCGCAACACTGCCTAAATT+TGG | - | chr7_1:80440573-80440592 | None:intergenic | 45.0% | |
| CAAAGGTAAGACAGACACCT+TGG | - | chr7_1:80440941-80440960 | None:intergenic | 45.0% | |
| ATTACCACCATACTACACGG+TGG | + | chr7_1:80441018-80441037 | Msa1042490:intron | 45.0% | |
| TAGAGAACCACCGTGTAGTA+TGG | - | chr7_1:80441028-80441047 | None:intergenic | 45.0% | |
| CCGGGAAAGAATACCTAACA+GGG | - | chr7_1:80441229-80441248 | None:intergenic | 45.0% | |
| CCCTGTTAGGTATTCTTTCC+CGG | + | chr7_1:80441226-80441245 | Msa1042490:intron | 45.0% | |
| !!! | CCGGCTACTTTTCTCATGTA+AGG | + | chr7_1:80441245-80441264 | Msa1042490:intron | 45.0% |
| ACTTAATTGACTGCTGTGCC+TGG | + | chr7_1:80441333-80441352 | Msa1042490:intron | 45.0% | |
| TGCGTGTAAGTACGTGCATA+AGG | - | chr7_1:80441929-80441948 | None:intergenic | 45.0% | |
| AACTGGGCTTGAAAACTGTG+GGG | - | chr7_1:80441988-80442007 | None:intergenic | 45.0% | |
| CAACTGGGCTTGAAAACTGT+GGG | - | chr7_1:80441989-80442008 | None:intergenic | 45.0% | |
| !! | CACAGTTTTCAAGCCCAGTT+GGG | + | chr7_1:80441988-80442007 | Msa1042490:CDS | 45.0% |
| AAGAACAAGGTTTACCCCTG+GGG | + | chr7_1:80442061-80442080 | Msa1042490:CDS | 45.0% | |
| GAGAACTTTATCTTCCCCAG+GGG | - | chr7_1:80442078-80442097 | None:intergenic | 45.0% | |
| !! | TAGCTCTGAGTCTGACATCA+TGG | + | chr7_1:80442316-80442335 | Msa1042490:CDS | 45.0% |
| !! | AGCTCTGAGTCTGACATCAT+GGG | + | chr7_1:80442317-80442336 | Msa1042490:CDS | 45.0% |
| TGCTCCTGAAGCAGAAATCT+TGG | - | chr7_1:80442465-80442484 | None:intergenic | 45.0% | |
| ACCTACAGCGGTTTGTCTAA+CGG | + | chr7_1:80442541-80442560 | Msa1042490:CDS | 45.0% | |
| GACAGACGTAGAGGAAAGAA+AGG | + | chr7_1:80442565-80442584 | Msa1042490:CDS | 45.0% | |
| TCAAACAGAGGCAGAAGTAG+AGG | + | chr7_1:80442631-80442650 | Msa1042490:CDS | 45.0% | |
| AGTTCTCGTCATGGCAGAAA+TGG | + | chr7_1:80442736-80442755 | Msa1042490:CDS | 45.0% | |
| CTCATGATCTCGTTGTTGTC+TGG | - | chr7_1:80442867-80442886 | None:intergenic | 45.0% | |
| !!! | GTTGCGGGCTAGTTTTAATC+AGG | + | chr7_1:80443151-80443170 | Msa1042490:intron | 45.0% |
| GATAGAGTTTAGCCCCATTG+AGG | + | chr7_1:80443249-80443268 | Msa1042490:CDS | 45.0% | |
| TCGTTGAGATCCTCCTCAAT+GGG | - | chr7_1:80443265-80443284 | None:intergenic | 45.0% | |
| ATCGTTGAGATCCTCCTCAA+TGG | - | chr7_1:80443266-80443285 | None:intergenic | 45.0% | |
| ATTGAGGAGGATCTCAACGA+TGG | + | chr7_1:80443265-80443284 | Msa1042490:CDS | 45.0% | |
| TTGAGGAGGATCTCAACGAT+GGG | + | chr7_1:80443266-80443285 | Msa1042490:CDS | 45.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr7_1:80439163-80439182 | None:intergenic | 50.0% |
| TAGGAGCAATTCCCATGTCG+GGG | + | chr7_1:80439321-80439340 | Msa1042490:intron | 50.0% | |
| ! | GAGTTGATTACTCCCCGACA+TGG | - | chr7_1:80439336-80439355 | None:intergenic | 50.0% |
| !! | GCTGATTTGCAGCACATACG+AGG | - | chr7_1:80439407-80439426 | None:intergenic | 50.0% |
| ! | AGGAAAAGTGTGCCGTGAAC+CGG | + | chr7_1:80439451-80439470 | Msa1042490:intron | 50.0% |
| ! | CTCATGCTGTCAATAGCGGA+TGG | + | chr7_1:80439789-80439808 | Msa1042490:intron | 50.0% |
| TAACGTGGGATTGCGACCTA+TGG | + | chr7_1:80439830-80439849 | Msa1042490:intron | 50.0% | |
| !! | ACCTATGGTGTCACCATGAC+AGG | + | chr7_1:80439845-80439864 | Msa1042490:intron | 50.0% |
| ACCTGTCATGGTGACACCAT+AGG | - | chr7_1:80439849-80439868 | None:intergenic | 50.0% | |
| CAAAAATTGCCTGTGGCAGG+TGG | + | chr7_1:80439876-80439895 | Msa1042490:intron | 50.0% | |
| ! | GATTTTATGCCACCTGCCAC+AGG | - | chr7_1:80439888-80439907 | None:intergenic | 50.0% |
| GGCTTCGTAGAACCAAGACT+TGG | + | chr7_1:80439993-80440012 | Msa1042490:intron | 50.0% | |
| GAACCAAGACTTGGCTAGCA+TGG | + | chr7_1:80440002-80440021 | Msa1042490:intron | 50.0% | |
| TTTGGCAGGTCCTTGCCTTT+AGG | + | chr7_1:80440114-80440133 | Msa1042490:intron | 50.0% | |
| TTGGCAGGTCCTTGCCTTTA+GGG | + | chr7_1:80440115-80440134 | Msa1042490:intron | 50.0% | |
| ACAATATGGGGAGGAGCTTC+AGG | - | chr7_1:80440149-80440168 | None:intergenic | 50.0% | |
| ! | TGGGTTGACCGGTCTATCTA+AGG | + | chr7_1:80440190-80440209 | Msa1042490:CDS | 50.0% |
| TTTGGCACAGACACACAGCT+AGG | - | chr7_1:80440555-80440574 | None:intergenic | 50.0% | |
| GTTGCATTGCACAGCATCCA+AGG | + | chr7_1:80440921-80440940 | Msa1042490:intron | 50.0% | |
| AGAACCACCGTGTAGTATGG+TGG | - | chr7_1:80441025-80441044 | None:intergenic | 50.0% | |
| GCCGGGAAAGAATACCTAAC+AGG | - | chr7_1:80441230-80441249 | None:intergenic | 50.0% | |
| CCAACTGGGCTTGAAAACTG+TGG | - | chr7_1:80441990-80442009 | None:intergenic | 50.0% | |
| !! | CCACAGTTTTCAAGCCCAGT+TGG | + | chr7_1:80441987-80442006 | Msa1042490:CDS | 50.0% |
| ! | ACACTCCCCTCGGTTTGAAA+TGG | - | chr7_1:80442205-80442224 | None:intergenic | 50.0% |
| TGGCGTGTCCAGATTAGAAG+TGG | - | chr7_1:80442495-80442514 | None:intergenic | 50.0% | |
| CCTACAGCGGTTTGTCTAAC+GGG | + | chr7_1:80442542-80442561 | Msa1042490:CDS | 50.0% | |
| CTACAGCGGTTTGTCTAACG+GGG | + | chr7_1:80442543-80442562 | Msa1042490:CDS | 50.0% | |
| ACAGAGGCAGAAGTAGAGGA+AGG | + | chr7_1:80442635-80442654 | Msa1042490:CDS | 50.0% | |
| TTGTTGTCTGGCTGTCATCC+CGG | - | chr7_1:80442855-80442874 | None:intergenic | 50.0% | |
| AGAGTTTAGCCCCATTGAGG+AGG | + | chr7_1:80443252-80443271 | Msa1042490:CDS | 50.0% | |
| CGTTGAGATCCTCCTCAATG+GGG | - | chr7_1:80443264-80443283 | None:intergenic | 50.0% | |
| TGAGGAGGATCTCAACGATG+GGG | + | chr7_1:80443267-80443286 | Msa1042490:CDS | 50.0% | |
| GAGGCAGAGAGAGTAGTTGC+AGG | - | chr7_1:80438236-80438255 | None:intergenic | 55.0% | |
| GGTGGGAGGATCAGATTCAG+AGG | - | chr7_1:80438255-80438274 | None:intergenic | 55.0% | |
| ! | GGAAAAGTGTGCCGTGAACC+GGG | + | chr7_1:80439452-80439471 | Msa1042490:intron | 55.0% |
| TTCTCTTGCGCCAGTGGTGA+AGG | - | chr7_1:80439495-80439514 | None:intergenic | 55.0% | |
| ATGCTCTTCTCTTGCGCCAG+TGG | - | chr7_1:80439501-80439520 | None:intergenic | 55.0% | |
| CAACGGTGCAGCTGCTGATA+AGG | - | chr7_1:80439547-80439566 | None:intergenic | 55.0% | |
| AGCAGCTGCACCGTTGCATT+TGG | + | chr7_1:80439551-80439570 | Msa1042490:CDS | 55.0% | |
| TGGGAACGATGAGCCATGCT+TGG | - | chr7_1:80442103-80442122 | None:intergenic | 55.0% | |
| CGTTCCCAAGAATGCAGCTG+CGG | + | chr7_1:80442115-80442134 | Msa1042490:CDS | 55.0% | |
| ATCGCGGCCATTTCAAACCG+AGG | + | chr7_1:80442195-80442214 | Msa1042490:CDS | 55.0% | |
| TCGCGGCCATTTCAAACCGA+GGG | + | chr7_1:80442196-80442215 | Msa1042490:CDS | 55.0% | |
| CAACGCAGCATCACCTACAG+CGG | + | chr7_1:80442529-80442548 | Msa1042490:CDS | 55.0% | |
| CCCGTTAGACAAACCGCTGT+AGG | - | chr7_1:80442545-80442564 | None:intergenic | 55.0% | |
| TCTAACGGGGACAGACGTAG+AGG | + | chr7_1:80442556-80442575 | Msa1042490:CDS | 55.0% | |
| TCCCAAGAATGCAGCTGCGG+AGG | + | chr7_1:80442118-80442137 | Msa1042490:CDS | 60.0% | |
| GCCTCCGCAGCTGCATTCTT+GGG | - | chr7_1:80442122-80442141 | None:intergenic | 60.0% | |
| TGCCTCCGCAGCTGCATTCT+TGG | - | chr7_1:80442123-80442142 | None:intergenic | 60.0% | |
| CGCGGCCATTTCAAACCGAG+GGG | + | chr7_1:80442197-80442216 | Msa1042490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 80438178 | 80443312 | 80438178 | ID=Msa1042490;Name=Msa1042490 |
| chr7_1 | mRNA | 80438178 | 80443312 | 80438178 | ID=Msa1042490-mRNA-1;Parent=Msa1042490;Name=Msa1042490-mRNA-1;_AED=0.16;_eAED=0.16;_QI=31|0.4|0.5|0.66|1|1|6|0|422 |
| chr7_1 | exon | 80438178 | 80438276 | 80438178 | ID=Msa1042490-mRNA-1:exon:21927;Parent=Msa1042490-mRNA-1 |
| chr7_1 | exon | 80438697 | 80438757 | 80438697 | ID=Msa1042490-mRNA-1:exon:21928;Parent=Msa1042490-mRNA-1 |
| chr7_1 | exon | 80439540 | 80439596 | 80439540 | ID=Msa1042490-mRNA-1:exon:21929;Parent=Msa1042490-mRNA-1 |
| chr7_1 | exon | 80440122 | 80440211 | 80440122 | ID=Msa1042490-mRNA-1:exon:21930;Parent=Msa1042490-mRNA-1 |
| chr7_1 | exon | 80441978 | 80442898 | 80441978 | ID=Msa1042490-mRNA-1:exon:21931;Parent=Msa1042490-mRNA-1 |
| chr7_1 | exon | 80443241 | 80443312 | 80443241 | ID=Msa1042490-mRNA-1:exon:21932;Parent=Msa1042490-mRNA-1 |
| chr7_1 | five_prime_UTR | 80438178 | 80438208 | 80438178 | ID=Msa1042490-mRNA-1:five_prime_utr;Parent=Msa1042490-mRNA-1 |
| chr7_1 | CDS | 80438209 | 80438276 | 80438209 | ID=Msa1042490-mRNA-1:cds;Parent=Msa1042490-mRNA-1 |
| chr7_1 | CDS | 80438697 | 80438757 | 80438697 | ID=Msa1042490-mRNA-1:cds;Parent=Msa1042490-mRNA-1 |
| chr7_1 | CDS | 80439540 | 80439596 | 80439540 | ID=Msa1042490-mRNA-1:cds;Parent=Msa1042490-mRNA-1 |
| chr7_1 | CDS | 80440122 | 80440211 | 80440122 | ID=Msa1042490-mRNA-1:cds;Parent=Msa1042490-mRNA-1 |
| chr7_1 | CDS | 80441978 | 80442898 | 80441978 | ID=Msa1042490-mRNA-1:cds;Parent=Msa1042490-mRNA-1 |
| chr7_1 | CDS | 80443241 | 80443312 | 80443241 | ID=Msa1042490-mRNA-1:cds;Parent=Msa1042490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
