AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1117550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117550 MtrunA17_Chr7g0255021 87.715 407 27 2 1 403 1 388 0.0 732
Msa1117550 MtrunA17_Chr6g0460311 51.064 94 24 3 1 94 23 94 1.67e-18 82.0
Msa1117550 MtrunA17_Chr4g0043791 46.835 79 22 2 17 95 66 124 1.30e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117550 AT5G41240.1 31.227 269 159 6 97 340 246 513 4.63e-27 114
Msa1117550 AT5G41220.1 36.158 177 96 5 108 267 249 425 7.44e-24 104
Msa1117550 AT5G41220.3 36.158 177 96 5 108 267 191 367 7.46e-24 104
Msa1117550 AT5G41220.2 36.158 177 96 5 108 267 199 375 7.64e-24 104
Msa1117550 AT3G47680.1 39.370 127 74 2 118 242 44 169 1.82e-21 94.7
Msa1117550 AT3G56490.1 52.128 94 21 3 1 94 19 88 2.37e-19 84.7
Msa1117550 AT1G31160.1 44.872 78 23 2 17 94 71 128 1.89e-12 66.2
Msa1117550 AT1G31160.2 43.590 78 24 2 17 94 71 128 2.76e-12 64.7

Find 101 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCGGAATTATTACAATA+TGG 0.179127 7_3:+65960488 None:intergenic
CCACATTTGTTCTTTGTCTA+TGG 0.182582 7_3:-65962479 Msa1117550:exon
TTTGGCAGGTCCTTGCCTTT+AGG 0.192355 7_3:-65960534 Msa1117550:intron
TTGGCAGGTCCTTGCCTTTA+GGG 0.242587 7_3:-65960533 Msa1117550:intron
AATGATGTATTTGACCATTT+AGG 0.247849 7_3:+65958229 None:intergenic
TGAGTTGGAGTTCCTCTTTA+AGG 0.259351 7_3:-65957825 Msa1117550:CDS
TGCCTCCGCAGCTGCATTCT+TGG 0.287331 7_3:+65958528 None:intergenic
ATCAAAGAGTAGATTCCTTT+TGG 0.297331 7_3:-65958504 Msa1117550:CDS
TGACAGGAGTATTATCAAAA+AGG 0.309485 7_3:-65961947 Msa1117550:CDS
TGTTGAAAGATGAACCTAAA+TGG 0.314612 7_3:-65958243 Msa1117550:CDS
ACAATATGGGGAGGAGCTTC+AGG 0.329232 7_3:+65960502 None:intergenic
GCCTCCGCAGCTGCATTCTT+GGG 0.331691 7_3:+65958529 None:intergenic
CCTACAGCGGTTTGTCTAAC+GGG 0.353092 7_3:-65958106 Msa1117550:CDS
CTTCCTTCAACATGGTGGTT+TGG 0.360514 7_3:+65961063 None:intergenic
TCCTCATAAAACACAGTAGA+AGG 0.377289 7_3:+65961919 None:intergenic
AGCAGCTGCACCGTTGCATT+TGG 0.381157 7_3:-65961097 Msa1117550:CDS
AGCATAGTTCATAAATTTGT+AGG 0.381452 7_3:-65958391 Msa1117550:CDS
GTAATATTATTCAACCCAAC+TGG 0.383376 7_3:+65958646 None:intergenic
AGAACCAAGATTTCTGCTTC+AGG 0.391537 7_3:-65958190 Msa1117550:CDS
CTCATGATCTCGTTGTTGTC+TGG 0.395467 7_3:+65957784 None:intergenic
TTTCGGAATTATTACAATAT+GGG 0.399163 7_3:+65960489 None:intergenic
TTCCTCTTTAAGGATATATC+CGG 0.407777 7_3:-65957815 Msa1117550:CDS
CAACGGTGCAGCTGCTGATA+AGG 0.410196 7_3:+65961104 None:intergenic
TCGTTGAGATCCTCCTCAAT+GGG 0.411473 7_3:+65957386 None:intergenic
AGTTCTCGTCATGGCAGAAA+TGG 0.413601 7_3:-65957912 Msa1117550:CDS
GTCAACCCATCTCTAGCTTT+CGG 0.415328 7_3:+65960472 None:intergenic
ATACTCAACCACTTCTAATC+TGG 0.425691 7_3:-65958164 Msa1117550:CDS
TGCTCCTGAAGCAGAAATCT+TGG 0.437645 7_3:+65958186 None:intergenic
ATTCTTAATTCTTAGCCAAA+AGG 0.441749 7_3:+65958489 None:intergenic
AAGAAAGGGAAAATCAAAAT+CGG 0.456154 7_3:-65958068 Msa1117550:CDS
GGAGAAAGAGTTGAATCTAA+AGG 0.457496 7_3:-65957858 Msa1117550:CDS
ATCGTTGAGATCCTCCTCAA+TGG 0.460759 7_3:+65957385 None:intergenic
GCGTTGTATTCACAACTTGA+TGG 0.470794 7_3:+65958136 None:intergenic
ACACTCCCCTCGGTTTGAAA+TGG 0.473048 7_3:+65958446 None:intergenic
GACAGACGTAGAGGAAAGAA+AGG 0.477930 7_3:-65958083 Msa1117550:CDS
GAGGCAGAGAGAGTAGTTGC+AGG 0.486175 7_3:+65962436 None:intergenic
TGGGTTGACCGGTCTATCTA+AGG 0.486756 7_3:-65960458 Msa1117550:intron
ATGTGATGAACAGGTTTGAC+AGG 0.487322 7_3:-65961963 Msa1117550:intron
TTGTTGTCTGGCTGTCATCC+CGG 0.489120 7_3:+65957796 None:intergenic
ACACTTTATTATCAAGATGA+AGG 0.490019 7_3:-65958298 Msa1117550:CDS
AAAGGAGAGAGAGTTTGAGT+TGG 0.492472 7_3:-65957840 Msa1117550:CDS
AGATGAACAAAATAAGTTGA+AGG 0.494225 7_3:-65957879 Msa1117550:CDS
TAGCTCTGAGTCTGACATCA+TGG 0.497740 7_3:-65958332 Msa1117550:CDS
ATGAGAACTTTATCTTCCCC+AGG 0.502700 7_3:+65958571 None:intergenic
TTCGGAATTATTACAATATG+GGG 0.506959 7_3:+65960490 None:intergenic
TGGGAACGATGAGCCATGCT+TGG 0.513548 7_3:+65958548 None:intergenic
TGGTCAAATACATCATTTGA+AGG 0.523432 7_3:-65958223 Msa1117550:CDS
ACCTACAGCGGTTTGTCTAA+CGG 0.528467 7_3:-65958107 Msa1117550:CDS
CAACTGGGCTTGAAAACTGT+GGG 0.529312 7_3:+65958662 None:intergenic
TTCAGGAGCTATATCCCTAA+AGG 0.532898 7_3:+65960519 None:intergenic
TTTATTTGTGACACTCCCCT+CGG 0.536783 7_3:+65958436 None:intergenic
GCATAGTTCATAAATTTGTA+GGG 0.549641 7_3:-65958390 Msa1117550:CDS
AAAGAACAAGGTTTACCCCT+GGG 0.552641 7_3:-65958588 Msa1117550:CDS
TCAAACAGAGGCAGAAGTAG+AGG 0.552685 7_3:-65958017 Msa1117550:CDS
AAAATCGGAAGAAACATCTT+CGG 0.555404 7_3:-65958053 Msa1117550:CDS
GATAGAGTTTAGCCCCATTG+AGG 0.556734 7_3:-65957399 Msa1117550:CDS
TCCCGGATATATCCTTAAAG+AGG 0.562142 7_3:+65957813 None:intergenic
TCCCAAGAATGCAGCTGCGG+AGG 0.562688 7_3:-65958530 Msa1117550:CDS
TCCTCTTTAAGGATATATCC+GGG 0.564537 7_3:-65957814 Msa1117550:CDS
TTGAGGAGGATCTCAACGAT+GGG 0.564739 7_3:-65957382 Msa1117550:CDS
TAATATTATTCAACCCAACT+GGG 0.569197 7_3:+65958647 None:intergenic
TCGCGGCCATTTCAAACCGA+GGG 0.574944 7_3:-65958452 Msa1117550:CDS
AAAGCTAGAGATGGGTTGAC+CGG 0.576749 7_3:-65960469 Msa1117550:CDS
AGCTCTGAGTCTGACATCAT+GGG 0.578396 7_3:-65958331 Msa1117550:CDS
ATCGCGGCCATTTCAAACCG+AGG 0.583777 7_3:-65958453 Msa1117550:CDS
ATAATTCCGAAAGCTAGAGA+TGG 0.589633 7_3:-65960478 Msa1117550:CDS
GGAATTATTACAATATGGGG+AGG 0.589697 7_3:+65960493 None:intergenic
TAATTCCGAAAGCTAGAGAT+GGG 0.593326 7_3:-65960477 Msa1117550:CDS
AGTTCAAGTTAGAGTATGCA+TGG 0.599942 7_3:-65958270 Msa1117550:CDS
TGAGAACTTTATCTTCCCCA+GGG 0.604635 7_3:+65958572 None:intergenic
GAGCTATATCCCTAAAGGCA+AGG 0.606414 7_3:+65960524 None:intergenic
AGAGTTTAGCCCCATTGAGG+AGG 0.609577 7_3:-65957396 Msa1117550:CDS
AAAAGAACAAGGTTTACCCC+TGG 0.612783 7_3:-65958589 Msa1117550:CDS
GAATTGAAAGCTTACATGGT+GGG 0.613026 7_3:+65962400 None:intergenic
ATAAAGTTCTCATCCAAGCA+TGG 0.618728 7_3:-65958561 Msa1117550:CDS
CCATAGACAAAGAACAAATG+TGG 0.619217 7_3:+65962479 None:intergenic
ACAGAGGCAGAAGTAGAGGA+AGG 0.621119 7_3:-65958013 Msa1117550:CDS
CCCGTTAGACAAACCGCTGT+AGG 0.621500 7_3:+65958106 None:intergenic
AGAGAACTCGCCAAATGCAA+CGG 0.627513 7_3:+65961087 None:intergenic
CCAACTGGGCTTGAAAACTG+TGG 0.629875 7_3:+65958661 None:intergenic
AAAGACAAAAGTTCTCGTCA+TGG 0.630789 7_3:-65957921 Msa1117550:CDS
GGGTTGAATAATATTACACT+CGG 0.631705 7_3:-65958640 Msa1117550:CDS
GGTGGGAGGATCAGATTCAG+AGG 0.633506 7_3:+65962417 None:intergenic
ACAGACGTAGAGGAAAGAAA+GGG 0.633644 7_3:-65958082 Msa1117550:CDS
CGTTCCCAAGAATGCAGCTG+CGG 0.637770 7_3:-65958533 Msa1117550:CDS
ATTGAGGAGGATCTCAACGA+TGG 0.640821 7_3:-65957383 Msa1117550:CDS
AATAATTACAACGAGCATCG+CGG 0.652454 7_3:-65958469 Msa1117550:CDS
GCTTTGTCTTTGTCAAACAG+AGG 0.658520 7_3:-65958029 Msa1117550:CDS
TGGCGTGTCCAGATTAGAAG+TGG 0.660830 7_3:+65958156 None:intergenic
TTGAAAGCTTACATGGTGGG+AGG 0.666328 7_3:+65962403 None:intergenic
TGTCACAAATAAAATCGCGA+TGG 0.669419 7_3:-65958426 Msa1117550:CDS
CTACAGCGGTTTGTCTAACG+GGG 0.672077 7_3:-65958105 Msa1117550:CDS
TCAAATACATCATTTGAAGG+AGG 0.672832 7_3:-65958220 Msa1117550:CDS
CGCGGCCATTTCAAACCGAG+GGG 0.678447 7_3:-65958451 Msa1117550:CDS
TCTAACGGGGACAGACGTAG+AGG 0.684957 7_3:-65958092 Msa1117550:CDS
AACTGGGCTTGAAAACTGTG+GGG 0.689956 7_3:+65958663 None:intergenic
CGTTGAGATCCTCCTCAATG+GGG 0.694772 7_3:+65957387 None:intergenic
CAACGCAGCATCACCTACAG+CGG 0.696498 7_3:-65958119 Msa1117550:CDS
AAGAACAAGGTTTACCCCTG+GGG 0.699394 7_3:-65958587 Msa1117550:CDS
TGAGGAGGATCTCAACGATG+GGG 0.712304 7_3:-65957381 Msa1117550:CDS
GAGAACTTTATCTTCCCCAG+GGG 0.729630 7_3:+65958573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAATATATGAATATT+AGG + chr7_3:65957860-65957879 None:intergenic 10.0%
!! AATAGAAAATAAAAAATGTA+AGG + chr7_3:65959297-65959316 None:intergenic 10.0%
!!! TACATTTTTTATTTTCTATT+TGG - chr7_3:65959297-65959316 Msa1117550:intron 10.0%
!!! TTTTAAAAAACTTACTATTT+AGG - chr7_3:65959465-65959484 Msa1117550:intron 10.0%
!! TTAAATACTATGAATTATTT+AGG - chr7_3:65959914-65959933 Msa1117550:intron 10.0%
!! ACAATAGTAAAATTATAATA+AGG + chr7_3:65960486-65960505 None:intergenic 10.0%
!! TAAATAGATTTGAATATATA+GGG + chr7_3:65960788-65960807 None:intergenic 10.0%
!! ATAAATAGATTTGAATATAT+AGG + chr7_3:65960789-65960808 None:intergenic 10.0%
!! AAACAAAATCACAATTAAAA+GGG + chr7_3:65957823-65957842 None:intergenic 15.0%
!! TAAACAAAATCACAATTAAA+AGG + chr7_3:65957824-65957843 None:intergenic 15.0%
!! TAAAACAGCTATTAAAAAAA+CGG - chr7_3:65958149-65958168 Msa1117550:CDS 15.0%
!! ATTTATTACTAGAAAATGAT+AGG - chr7_3:65958504-65958523 Msa1117550:CDS 15.0%
!!! AATATGTTGATAAAGTATAA+AGG + chr7_3:65959518-65959537 None:intergenic 15.0%
!! ATTATCTTCTAGATATAAAT+TGG - chr7_3:65959708-65959727 Msa1117550:intron 15.0%
!! TTATCTTCTAGATATAAATT+GGG - chr7_3:65959709-65959728 Msa1117550:intron 15.0%
!!! CACAATCAAAATTTAAAATT+CGG + chr7_3:65959854-65959873 None:intergenic 15.0%
!! AATCTAATTTGACAATTTAT+CGG - chr7_3:65960020-65960039 Msa1117550:intron 15.0%
!! AATCAGTAATCAATATTATA+AGG - chr7_3:65960397-65960416 Msa1117550:intron 15.0%
!! GTAAAATTATAATAAGGAAT+AGG + chr7_3:65960480-65960499 None:intergenic 15.0%
!!! CATCATTTTTTATTTTTCAT+TGG - chr7_3:65961038-65961057 Msa1117550:intron 15.0%
!!! AATAACAGTTTTTTATCTAT+AGG - chr7_3:65962420-65962439 Msa1117550:CDS 15.0%
!! TCATAATGACAGAATTAAAA+GGG + chr7_3:65957531-65957550 None:intergenic 20.0%
!! ATCATAATGACAGAATTAAA+AGG + chr7_3:65957532-65957551 None:intergenic 20.0%
!!! ATAAAAATGCAAGCTTTAAA+GGG + chr7_3:65957577-65957596 None:intergenic 20.0%
!! GTAAATCATATGTCATATAA+AGG + chr7_3:65957625-65957644 None:intergenic 20.0%
!!! ATTTATCAGTGTATTTTATG+TGG - chr7_3:65957761-65957780 Msa1117550:intron 20.0%
!! AACAAAATCACAATTAAAAG+GGG + chr7_3:65957822-65957841 None:intergenic 20.0%
!! TTATTTATTATGTGATGAAC+AGG - chr7_3:65957877-65957896 Msa1117550:CDS 20.0%
!!! TGTATATTTTTCTATAGTTG+AGG - chr7_3:65958025-65958044 Msa1117550:CDS 20.0%
!!! TTTAATAGCTGTTTTATCTT+TGG + chr7_3:65958145-65958164 None:intergenic 20.0%
!! TTCTAGTAATAAATCCTTTA+CGG + chr7_3:65958498-65958517 None:intergenic 20.0%
!!! TTTTTTATTTTCTATTTGGC+AGG - chr7_3:65959301-65959320 Msa1117550:intron 20.0%
!! TTTCGGAATTATTACAATAT+GGG + chr7_3:65959363-65959382 None:intergenic 20.0%
!!! TCAACATATTGATAACATAA+AGG - chr7_3:65959528-65959547 Msa1117550:intron 20.0%
!! GTTATTCATTCAAATCATTT+AGG - chr7_3:65959828-65959847 Msa1117550:intron 20.0%
!! AATTGTAAAATGAATTGCTA+TGG + chr7_3:65959984-65960003 None:intergenic 20.0%
!!! CAATTCATTTTACAATTATC+TGG - chr7_3:65959987-65960006 Msa1117550:intron 20.0%
!!! ATTTTACAATTATCTGGTTT+GGG - chr7_3:65959993-65960012 Msa1117550:intron 20.0%
!! TACCTTTGTAAAAGAAATAT+AGG - chr7_3:65960154-65960173 Msa1117550:intron 20.0%
!!! TTCCTATATTTCTTTTACAA+AGG + chr7_3:65960159-65960178 None:intergenic 20.0%
!! TTTGTAAAAGAAATATAGGA+AGG - chr7_3:65960158-65960177 Msa1117550:intron 20.0%
!!! ATTGATTACTGATTTTCTTA+AGG + chr7_3:65960391-65960410 None:intergenic 20.0%
!!! TTCTTGTGAATAGAAATTTT+GGG - chr7_3:65960560-65960579 Msa1117550:intron 20.0%
!! ATTAACCAATATTTCAAATG+GGG + chr7_3:65960837-65960856 None:intergenic 20.0%
!! CATTAACCAATATTTCAAAT+GGG + chr7_3:65960838-65960857 None:intergenic 20.0%
!! ACATTAACCAATATTTCAAA+TGG + chr7_3:65960839-65960858 None:intergenic 20.0%
!!! TTTATTATCGTATTGTTTTC+AGG - chr7_3:65961157-65961176 Msa1117550:intron 20.0%
!! AATGTGATTAGAGAAAAATA+TGG - chr7_3:65962097-65962116 Msa1117550:intron 20.0%
!! TAAAGTAACAATGTTAATCA+AGG - chr7_3:65962127-65962146 Msa1117550:intron 20.0%
!! AAAGTAACAATGTTAATCAA+GGG - chr7_3:65962128-65962147 Msa1117550:intron 20.0%
!! AGATAACATAAAAACTAGTT+TGG + chr7_3:65962188-65962207 None:intergenic 20.0%
!!! GTTTTTTATCTATAGGATTA+CGG - chr7_3:65962427-65962446 Msa1117550:CDS 20.0%
!!! TTTTTTATCTATAGGATTAC+GGG - chr7_3:65962428-65962447 Msa1117550:CDS 20.0%
! CATAATGACAGAATTAAAAG+GGG + chr7_3:65957530-65957549 None:intergenic 25.0%
! TTCTGTCATTATGATATCAT+AGG - chr7_3:65957537-65957556 Msa1117550:intron 25.0%
!! CATAAAAATGCAAGCTTTAA+AGG + chr7_3:65957578-65957597 None:intergenic 25.0%
!! TTTTATGTACTTAGGCTTAA+TGG - chr7_3:65957591-65957610 Msa1117550:intron 25.0%
! TTTATGTACTTAGGCTTAAT+GGG - chr7_3:65957592-65957611 Msa1117550:intron 25.0%
! ATACTTATCTGCTTCTATAA+TGG - chr7_3:65957663-65957682 Msa1117550:intron 25.0%
! AACGTAGAATAAATTAAGTG+AGG + chr7_3:65957996-65958015 None:intergenic 25.0%
!! TGCATGTTGATTATGTAAAA+TGG - chr7_3:65958175-65958194 Msa1117550:CDS 25.0%
! GATTATGTAAAATGGTTCAA+TGG - chr7_3:65958183-65958202 Msa1117550:CDS 25.0%
! CATTTGCCTTTATAATAACA+TGG + chr7_3:65958213-65958232 None:intergenic 25.0%
! AAGTCAAGAAATGAAAAAGA+GGG - chr7_3:65958426-65958445 Msa1117550:CDS 25.0%
! TCTAGTAATAAATCCTTTAC+GGG + chr7_3:65958497-65958516 None:intergenic 25.0%
! ATAAAATGCAAAATGATGCA+TGG + chr7_3:65958863-65958882 None:intergenic 25.0%
! TAAGGATTATCAATTGCTAT+GGG + chr7_3:65959279-65959298 None:intergenic 25.0%
! TTCGGAATTATTACAATATG+GGG + chr7_3:65959362-65959381 None:intergenic 25.0%
! CTTTCGGAATTATTACAATA+TGG + chr7_3:65959364-65959383 None:intergenic 25.0%
!! TGTTGATAAAGTATAAAGGA+AGG + chr7_3:65959514-65959533 None:intergenic 25.0%
!! TAAATTGGGCTACATATTTT+TGG - chr7_3:65959723-65959742 Msa1117550:intron 25.0%
!!! TTAAATTTTGATTGTGCCTT+TGG - chr7_3:65959858-65959877 Msa1117550:intron 25.0%
!! ATGAATATGAAGTAGACTTT+TGG - chr7_3:65959938-65959957 Msa1117550:intron 25.0%
!! CATTTTACAATTATCTGGTT+TGG - chr7_3:65959992-65960011 Msa1117550:intron 25.0%
! ATATCATGTCTATGTATCAA+CGG + chr7_3:65960062-65960081 None:intergenic 25.0%
! TGATATAGTTCTTCATTTAG+TGG - chr7_3:65960076-65960095 Msa1117550:intron 25.0%
!!! ATTTTCTTAAGGTGTTTTCA+GGG + chr7_3:65960380-65960399 None:intergenic 25.0%
! CAAAATTTCTATTCACAAGA+AGG + chr7_3:65960561-65960580 None:intergenic 25.0%
!! CTTCTTGTGAATAGAAATTT+TGG - chr7_3:65960559-65960578 Msa1117550:intron 25.0%
! TTCAAGAATAGCTTAATTGA+AGG + chr7_3:65960942-65960961 None:intergenic 25.0%
! TAATATTATTCAACCCAACT+GGG + chr7_3:65961205-65961224 None:intergenic 25.0%
! ATTCTTAATTCTTAGCCAAA+AGG + chr7_3:65961363-65961382 None:intergenic 25.0%
! AGCATAGTTCATAAATTTGT+AGG - chr7_3:65961458-65961477 Msa1117550:intron 25.0%
! GCATAGTTCATAAATTTGTA+GGG - chr7_3:65961459-65961478 Msa1117550:intron 25.0%
! ACACTTTATTATCAAGATGA+AGG - chr7_3:65961551-65961570 Msa1117550:intron 25.0%
! AATGATGTATTTGACCATTT+AGG + chr7_3:65961623-65961642 None:intergenic 25.0%
! AAGAAAGGGAAAATCAAAAT+CGG - chr7_3:65961781-65961800 Msa1117550:intron 25.0%
! AGGAAAGCAAAAATCAAAAT+CGG - chr7_3:65961856-65961875 Msa1117550:intron 25.0%
!!! TCAACTTATTTTGTTCATCT+TGG + chr7_3:65961970-65961989 None:intergenic 25.0%
!! AGATGAACAAAATAAGTTGA+AGG - chr7_3:65961970-65961989 Msa1117550:intron 25.0%
!! TTTTAATCAGGTGTAACAAA+TGG - chr7_3:65962364-65962383 Msa1117550:intron 25.0%
! GATATCAACAAAATTTGACT+TGG - chr7_3:65962389-65962408 Msa1117550:intron 25.0%
AATGGAATTGAAAGCTTACA+TGG + chr7_3:65957456-65957475 None:intergenic 30.0%
AGATCAAAAAATTCAGAGGT+TGG + chr7_3:65957499-65957518 None:intergenic 30.0%
ATGCAGATCAAAAAATTCAG+AGG + chr7_3:65957503-65957522 None:intergenic 30.0%
! GCTTGCATTTTTATGTACTT+AGG - chr7_3:65957583-65957602 Msa1117550:intron 30.0%
GGAATAGGAAATTAAGAATG+TGG + chr7_3:65957801-65957820 None:intergenic 30.0%
ATCACAATTAAAAGGGGAAT+AGG + chr7_3:65957816-65957835 None:intergenic 30.0%
!! TGACAGGAGTATTATCAAAA+AGG - chr7_3:65957902-65957921 Msa1117550:CDS 30.0%
TGTGACTGTGATATTGATAT+AGG - chr7_3:65958049-65958068 Msa1117550:CDS 30.0%
GTGACTGTGATATTGATATA+GGG - chr7_3:65958050-65958069 Msa1117550:CDS 30.0%
GGACATCCATGTTATTATAA+AGG - chr7_3:65958204-65958223 Msa1117550:CDS 30.0%
TTATTAACATTTGCCCTTGA+GGG + chr7_3:65958246-65958265 None:intergenic 30.0%
TTTATTAACATTTGCCCTTG+AGG + chr7_3:65958247-65958266 None:intergenic 30.0%
GAAGTCAAGAAATGAAAAAG+AGG - chr7_3:65958425-65958444 Msa1117550:CDS 30.0%
AAATGGGTCATAGAAGTAAT+TGG - chr7_3:65958454-65958473 Msa1117550:CDS 30.0%
!!! CTGAACAGTAACATTTTTTG+GGG + chr7_3:65958579-65958598 None:intergenic 30.0%
!!! GCTGAACAGTAACATTTTTT+GGG + chr7_3:65958580-65958599 None:intergenic 30.0%
!!! GTTTTTTAACTCATTTGACC+CGG + chr7_3:65958674-65958693 None:intergenic 30.0%
GACTATACCATAATAGATTC+CGG + chr7_3:65958935-65958954 None:intergenic 30.0%
GAATCTATTATGGTATAGTC+TGG - chr7_3:65958935-65958954 Msa1117550:intron 30.0%
ACCTTGTGTTAAATGTCAAT+AGG - chr7_3:65959173-65959192 Msa1117550:intron 30.0%
TTCACCATTAGCTATTATTC+TGG - chr7_3:65959227-65959246 Msa1117550:intron 30.0%
TTGACCAGAATAATAGCTAA+TGG + chr7_3:65959234-65959253 None:intergenic 30.0%
GTAAGGATTATCAATTGCTA+TGG + chr7_3:65959280-65959299 None:intergenic 30.0%
GAAAAATACCTTAGATAGAC+CGG + chr7_3:65959402-65959421 None:intergenic 30.0%
!! CAATGTTTTCTAGCATTGAA+AGG + chr7_3:65959679-65959698 None:intergenic 30.0%
TATCATGTCTATGTATCAAC+GGG + chr7_3:65960061-65960080 None:intergenic 30.0%
! GAATATAGTTGATGTTCTCT+AGG - chr7_3:65960100-65960119 Msa1117550:intron 30.0%
!! CATACTCCGAAATCATTTTT+GGG - chr7_3:65960188-65960207 Msa1117550:intron 30.0%
!! ATACTCCGAAATCATTTTTG+GGG - chr7_3:65960189-65960208 Msa1117550:intron 30.0%
ATGATAAATCATACTTCGTG+TGG + chr7_3:65960321-65960340 None:intergenic 30.0%
! ACATTTTGCTAACAAGATGT+GGG + chr7_3:65960351-65960370 None:intergenic 30.0%
! TACATTTTGCTAACAAGATG+TGG + chr7_3:65960352-65960371 None:intergenic 30.0%
!! GATTTTCTTAAGGTGTTTTC+AGG + chr7_3:65960381-65960400 None:intergenic 30.0%
!! ATAAGGTATTTTTCCCTGTT+AGG - chr7_3:65960414-65960433 Msa1117550:intron 30.0%
!! ACTATTTTTCTAAGCAGTGT+TGG - chr7_3:65960507-65960526 Msa1117550:CDS 30.0%
!! ATTGAGCTCAGTTTGTTAAA+AGG + chr7_3:65960624-65960643 None:intergenic 30.0%
! AACAATGAATGATAGTGTGA+TGG + chr7_3:65960761-65960780 None:intergenic 30.0%
! TATTGGTTAATGTGTGTTGA+TGG - chr7_3:65960846-65960865 Msa1117550:intron 30.0%
ATAGCTTAATTGAAGGAGTT+CGG + chr7_3:65960935-65960954 None:intergenic 30.0%
!! TATTTGTAGTTGATGATCCA+AGG + chr7_3:65961094-65961113 None:intergenic 30.0%
GTAATATTATTCAACCCAAC+TGG + chr7_3:65961206-65961225 None:intergenic 30.0%
GGGTTGAATAATATTACACT+CGG - chr7_3:65961209-65961228 Msa1117550:intron 30.0%
AACGACAATCAACTCAAAAA+AGG - chr7_3:65961237-65961256 Msa1117550:intron 30.0%
CTCAAAAAAGGAAAAGAACA+AGG - chr7_3:65961249-65961268 Msa1117550:intron 30.0%
! ATCAAAGAGTAGATTCCTTT+TGG - chr7_3:65961345-65961364 Msa1117550:intron 30.0%
!! ACCACTTTTCTTTTTCTCAA+AGG + chr7_3:65961498-65961517 None:intergenic 30.0%
TGTTGAAAGATGAACCTAAA+TGG - chr7_3:65961606-65961625 Msa1117550:intron 30.0%
TGGTCAAATACATCATTTGA+AGG - chr7_3:65961626-65961645 Msa1117550:intron 30.0%
TCAAATACATCATTTGAAGG+AGG - chr7_3:65961629-65961648 Msa1117550:intron 30.0%
AAAATCGGAAGAAACATCTT+CGG - chr7_3:65961796-65961815 Msa1117550:intron 30.0%
AAAGCAAAAATCAAAATCGG+AGG - chr7_3:65961859-65961878 Msa1117550:intron 30.0%
! TTCCTCTTTAAGGATATATC+CGG - chr7_3:65962034-65962053 Msa1117550:intron 30.0%
AATACAACTACTGTGAACAA+TGG + chr7_3:65962163-65962182 None:intergenic 30.0%
ATACATCCTTAAACTATGTC+AGG - chr7_3:65962242-65962261 Msa1117550:intron 30.0%
TACATCCTTAAACTATGTCA+GGG - chr7_3:65962243-65962262 Msa1117550:intron 30.0%
AAAAACCCTGACATAGTTTA+AGG + chr7_3:65962251-65962270 None:intergenic 30.0%
!!! CTTTTGATTTGAAGTCTTCA+TGG - chr7_3:65962295-65962314 Msa1117550:intron 30.0%
AACTGCAGAGTACAATATTA+TGG - chr7_3:65962327-65962346 Msa1117550:intron 30.0%
GTACAATATTATGGATGTTG+CGG - chr7_3:65962336-65962355 Msa1117550:intron 30.0%
TACAATATTATGGATGTTGC+GGG - chr7_3:65962337-65962356 Msa1117550:intron 30.0%
CCATAGACAAAGAACAAATG+TGG + chr7_3:65957373-65957392 None:intergenic 35.0%
CCACATTTGTTCTTTGTCTA+TGG - chr7_3:65957370-65957389 Msa1117550:CDS 35.0%
GAATTGAAAGCTTACATGGT+GGG + chr7_3:65957452-65957471 None:intergenic 35.0%
AAACAGGTGAAGAAAGAGAA+TGG + chr7_3:65957474-65957493 None:intergenic 35.0%
! TCCTTCTACTGTGTTTTATG+AGG - chr7_3:65957929-65957948 Msa1117550:CDS 35.0%
TCCTCATAAAACACAGTAGA+AGG + chr7_3:65957933-65957952 None:intergenic 35.0%
! TGTGTTTTATGAGGATGATG+AGG - chr7_3:65957938-65957957 Msa1117550:CDS 35.0%
TGTCTGAGTCTGATGATTTA+TGG - chr7_3:65957966-65957985 Msa1117550:CDS 35.0%
CAAAAAGAGCAACTTTGCAT+TGG + chr7_3:65958338-65958357 None:intergenic 35.0%
TGAAAAAGAGGGCTAGAAAA+TGG - chr7_3:65958437-65958456 Msa1117550:CDS 35.0%
GAAAAAGAGGGCTAGAAAAT+GGG - chr7_3:65958438-65958457 Msa1117550:CDS 35.0%
!!! CGCTGAACAGTAACATTTTT+TGG + chr7_3:65958581-65958600 None:intergenic 35.0%
AGTTAAAAAACCTTCACCAC+TGG - chr7_3:65958683-65958702 Msa1117550:intron 35.0%
ATAGATTCCGGTGCAAAATA+TGG + chr7_3:65958923-65958942 None:intergenic 35.0%
! TTTTGCACCGGAATCTATTA+TGG - chr7_3:65958925-65958944 Msa1117550:intron 35.0%
!!! ATAGTCTGGCACTTGTTTTA+AGG - chr7_3:65958949-65958968 Msa1117550:intron 35.0%
!!! TAGTCTGGCACTTGTTTTAA+GGG - chr7_3:65958950-65958969 Msa1117550:intron 35.0%
GCCTATTGACATTTAACACA+AGG + chr7_3:65959177-65959196 None:intergenic 35.0%
GGAATTATTACAATATGGGG+AGG + chr7_3:65959359-65959378 None:intergenic 35.0%
ATAATTCCGAAAGCTAGAGA+TGG - chr7_3:65959371-65959390 Msa1117550:intron 35.0%
TAATTCCGAAAGCTAGAGAT+GGG - chr7_3:65959372-65959391 Msa1117550:intron 35.0%
CTTTATAAGTCTACTGCATG+TGG - chr7_3:65959806-65959825 Msa1117550:intron 35.0%
GATAAATACGTGGTATCCAA+AGG + chr7_3:65959877-65959896 None:intergenic 35.0%
TTGGATACCACGTATTTATC+AGG - chr7_3:65959877-65959896 Msa1117550:intron 35.0%
ATCATGTCTATGTATCAACG+GGG + chr7_3:65960060-65960079 None:intergenic 35.0%
CCAAAAATGATTTCGGAGTA+TGG + chr7_3:65960190-65960209 None:intergenic 35.0%
! CCATACTCCGAAATCATTTT+TGG - chr7_3:65960187-65960206 Msa1117550:intron 35.0%
! CATTTTGCTAACAAGATGTG+GGG + chr7_3:65960350-65960369 None:intergenic 35.0%
ACTTGACTACTTCATCATAC+AGG + chr7_3:65960660-65960679 None:intergenic 35.0%
AAATGCCTTCTATTCTGTCA+AGG + chr7_3:65960698-65960717 None:intergenic 35.0%
AGATATATTTCGGCGATTGA+TGG + chr7_3:65960732-65960751 None:intergenic 35.0%
!! ATGGCGGACAAGATATATTT+CGG + chr7_3:65960742-65960761 None:intergenic 35.0%
! AATGAATGATAGTGTGATGG+CGG + chr7_3:65960758-65960777 None:intergenic 35.0%
TATTTCAAATGGGGTGGAAA+TGG + chr7_3:65960828-65960847 None:intergenic 35.0%
! TTCCACCCCATTTGAAATAT+TGG - chr7_3:65960829-65960848 Msa1117550:intron 35.0%
AACCAATATTTCAAATGGGG+TGG + chr7_3:65960834-65960853 None:intergenic 35.0%
CATCTACATTGTCATGCTTA+TGG - chr7_3:65960909-65960928 Msa1117550:intron 35.0%
CTATTCTTGAAGAGAGCAAA+CGG - chr7_3:65960951-65960970 Msa1117550:intron 35.0%
ATACATATCTTCCCAAACCT+TGG - chr7_3:65961074-65961093 Msa1117550:CDS 35.0%
!! TAGTTGATGATCCAAGGTTT+GGG + chr7_3:65961088-65961107 None:intergenic 35.0%
ATAAAGTTCTCATCCAAGCA+TGG - chr7_3:65961288-65961307 Msa1117550:intron 35.0%
! AATAATTACAACGAGCATCG+CGG - chr7_3:65961380-65961399 Msa1117550:intron 35.0%
TGTCACAAATAAAATCGCGA+TGG - chr7_3:65961423-65961442 Msa1117550:intron 35.0%
! GCCTTTGAGAAAAAGAAAAG+TGG - chr7_3:65961494-65961513 Msa1117550:intron 35.0%
! AGTTCAAGTTAGAGTATGCA+TGG - chr7_3:65961579-65961598 Msa1117550:intron 35.0%
ATACTCAACCACTTCTAATC+TGG - chr7_3:65961685-65961704 Msa1117550:intron 35.0%
! ATGACGAGAACTTTTGTCTT+TGG + chr7_3:65961929-65961948 None:intergenic 35.0%
AAAGACAAAAGTTCTCGTCA+TGG - chr7_3:65961928-65961947 Msa1117550:CDS 35.0%
GGAGAAAGAGTTGAATCTAA+AGG - chr7_3:65961991-65962010 Msa1117550:intron 35.0%
! TCCTCTTTAAGGATATATCC+GGG - chr7_3:65962035-65962054 Msa1117550:intron 35.0%
ACAATGTTAATCAAGGGTCA+AGG - chr7_3:65962134-65962153 Msa1117550:intron 35.0%
!!! AGGGTTTTTTTGTGCAATGT+TGG - chr7_3:65962262-65962281 Msa1117550:intron 35.0%
GGAATTGAAAGCTTACATGG+TGG + chr7_3:65957453-65957472 None:intergenic 40.0%
AATTCAGAGGTTGGAGAAAC+AGG + chr7_3:65957490-65957509 None:intergenic 40.0%
ATGTGATGAACAGGTTTGAC+AGG - chr7_3:65957886-65957905 Msa1117550:CDS 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr7_3:65958360-65958379 Msa1117550:CDS 40.0%
GCTGCAAATCAGCTTGTATT+CGG - chr7_3:65958615-65958634 Msa1117550:CDS 40.0%
CTGCAAATCAGCTTGTATTC+GGG - chr7_3:65958616-65958635 Msa1117550:CDS 40.0%
ATGCCTATCTTCCTTCAACA+TGG + chr7_3:65958797-65958816 None:intergenic 40.0%
TTGAAGGAAGATAGGCATGT+GGG - chr7_3:65958799-65958818 Msa1117550:intron 40.0%
TGATGCATGGTTGTCAAGAT+CGG + chr7_3:65958850-65958869 None:intergenic 40.0%
TGGCGATCTTTCAACTGTTT+AGG + chr7_3:65958903-65958922 None:intergenic 40.0%
! AAGATCGCCATATTTTGCAC+CGG - chr7_3:65958913-65958932 Msa1117550:intron 40.0%
AAACTCCGTGCTATATAACG+TGG - chr7_3:65959016-65959035 Msa1117550:intron 40.0%
AACTCCGTGCTATATAACGT+GGG - chr7_3:65959017-65959036 Msa1117550:intron 40.0%
CAATCCCACGTTATATAGCA+CGG + chr7_3:65959024-65959043 None:intergenic 40.0%
ATGTTGTCAAATAGCAGCTG+TGG + chr7_3:65959114-65959133 None:intergenic 40.0%
TCCTCAAGCTTTGCAAGTTA+GGG + chr7_3:65959138-65959157 None:intergenic 40.0%
TTCCTCAAGCTTTGCAAGTT+AGG + chr7_3:65959139-65959158 None:intergenic 40.0%
TTCAGGAGCTATATCCCTAA+AGG + chr7_3:65959333-65959352 None:intergenic 40.0%
!! GCATTGAAAGGTACTCTTTC+AGG + chr7_3:65959667-65959686 None:intergenic 40.0%
TGTGTGTCTGTGCCAAATTT+AGG - chr7_3:65959759-65959778 Msa1117550:intron 40.0%
ACACTGTCCTGATAAATACG+TGG + chr7_3:65959887-65959906 None:intergenic 40.0%
ATGATTTCGGAGTATGGCTA+TGG + chr7_3:65960184-65960203 None:intergenic 40.0%
!!! TCCGAAATCATTTTTGGGGT+TGG - chr7_3:65960193-65960212 Msa1117550:intron 40.0%
CCCAACCCCAAAAATGATTT+CGG + chr7_3:65960197-65960216 None:intergenic 40.0%
!!! CCGAAATCATTTTTGGGGTT+GGG - chr7_3:65960194-65960213 Msa1117550:intron 40.0%
!!! CGAAATCATTTTTGGGGTTG+GGG - chr7_3:65960195-65960214 Msa1117550:intron 40.0%
GGTATTACCACCATACTACA+CGG - chr7_3:65960216-65960235 Msa1117550:intron 40.0%
! TAGAGAGAAGTGCGCAATTA+AGG + chr7_3:65960255-65960274 None:intergenic 40.0%
CTTACATGAGAAAAGTAGCC+GGG + chr7_3:65960448-65960467 None:intergenic 40.0%
CCTTACATGAGAAAAGTAGC+CGG + chr7_3:65960449-65960468 None:intergenic 40.0%
TTCTATTCACAAGAAGGACC+AGG + chr7_3:65960555-65960574 None:intergenic 40.0%
GTAGTCCTTGACAGAATAGA+AGG - chr7_3:65960690-65960709 Msa1117550:intron 40.0%
!! GTAGTTGATGATCCAAGGTT+TGG + chr7_3:65961089-65961108 None:intergenic 40.0%
AAAAGAACAAGGTTTACCCC+TGG - chr7_3:65961260-65961279 Msa1117550:intron 40.0%
AAAGAACAAGGTTTACCCCT+GGG - chr7_3:65961261-65961280 Msa1117550:intron 40.0%
TGAGAACTTTATCTTCCCCA+GGG + chr7_3:65961280-65961299 None:intergenic 40.0%
ATGAGAACTTTATCTTCCCC+AGG + chr7_3:65961281-65961300 None:intergenic 40.0%
TTTATTTGTGACACTCCCCT+CGG + chr7_3:65961416-65961435 None:intergenic 40.0%
AGAACCAAGATTTCTGCTTC+AGG - chr7_3:65961659-65961678 Msa1117550:intron 40.0%
GCGTTGTATTCACAACTTGA+TGG + chr7_3:65961716-65961735 None:intergenic 40.0%
ACAGACGTAGAGGAAAGAAA+GGG - chr7_3:65961767-65961786 Msa1117550:intron 40.0%
GCTTTGTCTTTGTCAAACAG+AGG - chr7_3:65961820-65961839 Msa1117550:intron 40.0%
AAAGGAGAGAGAGTTTGAGT+TGG - chr7_3:65962009-65962028 Msa1117550:intron 40.0%
! TGAGTTGGAGTTCCTCTTTA+AGG - chr7_3:65962024-65962043 Msa1117550:intron 40.0%
TCCCGGATATATCCTTAAAG+AGG + chr7_3:65962039-65962058 None:intergenic 40.0%
! TTGAAAGCTTACATGGTGGG+AGG + chr7_3:65957449-65957468 None:intergenic 45.0%
! AATGCTAACTTGTGCCCTCA+AGG - chr7_3:65958229-65958248 Msa1117550:CDS 45.0%
! ATGCTAACTTGTGCCCTCAA+GGG - chr7_3:65958230-65958249 Msa1117550:CDS 45.0%
GTTCCTTAACATGTGCCCTT+AGG - chr7_3:65958359-65958378 Msa1117550:CDS 45.0%
! CATGCTAACTTGTGCCCTAA+GGG + chr7_3:65958377-65958396 None:intergenic 45.0%
! TCATGCTAACTTGTGCCCTA+AGG + chr7_3:65958378-65958397 None:intergenic 45.0%
CTTTACGGGTTCAATGCTTC+AGG + chr7_3:65958483-65958502 None:intergenic 45.0%
!! CTGAAGCATTGAACCCGTAA+AGG - chr7_3:65958481-65958500 Msa1117550:CDS 45.0%
GATAGGAGCAATTCCCATGT+CGG - chr7_3:65958521-65958540 Msa1117550:CDS 45.0%
ATAGGAGCAATTCCCATGTC+GGG - chr7_3:65958522-65958541 Msa1117550:CDS 45.0%
AGTTGATTACTCCCCGACAT+GGG + chr7_3:65958537-65958556 None:intergenic 45.0%
! CTGATTTGCAGCACATACGA+GGG + chr7_3:65958607-65958626 None:intergenic 45.0%
ATTCGGGTCACAACCATGTT+AGG - chr7_3:65958632-65958651 Msa1117550:CDS 45.0%
! ACGGCACACTTTTCCTAACA+TGG + chr7_3:65958648-65958667 None:intergenic 45.0%
AACTCATTTGACCCGGTTCA+CGG + chr7_3:65958667-65958686 None:intergenic 45.0%
AAGGAAGACTGCAAAAACGC+AGG + chr7_3:65958729-65958748 None:intergenic 45.0%
AGAGAACTCGCCAAATGCAA+CGG + chr7_3:65958765-65958784 None:intergenic 45.0%
CTACCAAACCACCATGTTGA+AGG - chr7_3:65958783-65958802 Msa1117550:intron 45.0%
CTTCCTTCAACATGGTGGTT+TGG + chr7_3:65958789-65958808 None:intergenic 45.0%
CCTATCTTCCTTCAACATGG+TGG + chr7_3:65958794-65958813 None:intergenic 45.0%
CCACCATGTTGAAGGAAGAT+AGG - chr7_3:65958791-65958810 Msa1117550:intron 45.0%
GTTGAAGGAAGATAGGCATG+TGG - chr7_3:65958798-65958817 Msa1117550:intron 45.0%
GATGCATGGTTGTCAAGATC+GGG + chr7_3:65958849-65958868 None:intergenic 45.0%
CTCATGCTGTCAATAGCAGA+TGG - chr7_3:65958990-65959009 Msa1117550:intron 45.0%
!!! TTTTGAAGCACGACCTGTCA+TGG + chr7_3:65959062-65959081 None:intergenic 45.0%
CGTGCTTCAAAAATTGCCTG+TGG - chr7_3:65959070-65959089 Msa1117550:intron 45.0%
CTTCAAAAATTGCCTGTGGC+AGG - chr7_3:65959074-65959093 Msa1117550:intron 45.0%
TTGTCAAATAGCAGCTGTGG+CGG + chr7_3:65959111-65959130 None:intergenic 45.0%
CCTCAAGCTTTGCAAGTTAG+GGG + chr7_3:65959137-65959156 None:intergenic 45.0%
AAACCATGCTAGCCAAGTCT+TGG + chr7_3:65959209-65959228 None:intergenic 45.0%
GAGCTATATCCCTAAAGGCA+AGG + chr7_3:65959328-65959347 None:intergenic 45.0%
!! GTCAACCCATCTCTAGCTTT+CGG + chr7_3:65959380-65959399 None:intergenic 45.0%
!! AAAGCTAGAGATGGGTTGAC+CGG - chr7_3:65959380-65959399 Msa1117550:intron 45.0%
GCCAAATTTAGGCAGTGTTG+CGG - chr7_3:65959770-65959789 Msa1117550:intron 45.0%
ACCGCAACACTGCCTAAATT+TGG + chr7_3:65959774-65959793 None:intergenic 45.0%
CAAAGGTAAGACAGACACCT+TGG + chr7_3:65960142-65960161 None:intergenic 45.0%
ATTACCACCATACTACACGG+TGG - chr7_3:65960219-65960238 Msa1117550:intron 45.0%
TAGAGAACCACCGTGTAGTA+TGG + chr7_3:65960229-65960248 None:intergenic 45.0%
CCGGGAAAGAATACCTAACA+GGG + chr7_3:65960430-65960449 None:intergenic 45.0%
CCCTGTTAGGTATTCTTTCC+CGG - chr7_3:65960427-65960446 Msa1117550:intron 45.0%
!!! CCGGCTACTTTTCTCATGTA+AGG - chr7_3:65960446-65960465 Msa1117550:intron 45.0%
ACTTAATTGACTGCTGTGCC+TGG - chr7_3:65960534-65960553 Msa1117550:intron 45.0%
TGCGTGTAAGTACGTGCATA+AGG + chr7_3:65961130-65961149 None:intergenic 45.0%
AACTGGGCTTGAAAACTGTG+GGG + chr7_3:65961189-65961208 None:intergenic 45.0%
CAACTGGGCTTGAAAACTGT+GGG + chr7_3:65961190-65961209 None:intergenic 45.0%
!! CACAGTTTTCAAGCCCAGTT+GGG - chr7_3:65961189-65961208 Msa1117550:intron 45.0%
AAGAACAAGGTTTACCCCTG+GGG - chr7_3:65961262-65961281 Msa1117550:intron 45.0%
GAGAACTTTATCTTCCCCAG+GGG + chr7_3:65961279-65961298 None:intergenic 45.0%
!! TAGCTCTGAGTCTGACATCA+TGG - chr7_3:65961517-65961536 Msa1117550:intron 45.0%
!! AGCTCTGAGTCTGACATCAT+GGG - chr7_3:65961518-65961537 Msa1117550:intron 45.0%
TGCTCCTGAAGCAGAAATCT+TGG + chr7_3:65961666-65961685 None:intergenic 45.0%
ACCTACAGCGGTTTGTCTAA+CGG - chr7_3:65961742-65961761 Msa1117550:intron 45.0%
GACAGACGTAGAGGAAAGAA+AGG - chr7_3:65961766-65961785 Msa1117550:intron 45.0%
TCAAACAGAGGCAGAAGTAG+AGG - chr7_3:65961832-65961851 Msa1117550:intron 45.0%
AGTTCTCGTCATGGCAGAAA+TGG - chr7_3:65961937-65961956 Msa1117550:CDS 45.0%
CTCATGATCTCGTTGTTGTC+TGG + chr7_3:65962068-65962087 None:intergenic 45.0%
!!! GTTGCGGGCTAGTTTTAATC+AGG - chr7_3:65962352-65962371 Msa1117550:intron 45.0%
GATAGAGTTTAGCCCCATTG+AGG - chr7_3:65962450-65962469 Msa1117550:CDS 45.0%
TCGTTGAGATCCTCCTCAAT+GGG + chr7_3:65962466-65962485 None:intergenic 45.0%
ATCGTTGAGATCCTCCTCAA+TGG + chr7_3:65962467-65962486 None:intergenic 45.0%
ATTGAGGAGGATCTCAACGA+TGG - chr7_3:65962466-65962485 Msa1117550:exon 45.0%
TTGAGGAGGATCTCAACGAT+GGG - chr7_3:65962467-65962486 Msa1117550:exon 45.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr7_3:65958365-65958384 None:intergenic 50.0%
TAGGAGCAATTCCCATGTCG+GGG - chr7_3:65958523-65958542 Msa1117550:CDS 50.0%
! GAGTTGATTACTCCCCGACA+TGG + chr7_3:65958538-65958557 None:intergenic 50.0%
!! GCTGATTTGCAGCACATACG+AGG + chr7_3:65958608-65958627 None:intergenic 50.0%
! AGGAAAAGTGTGCCGTGAAC+CGG - chr7_3:65958652-65958671 Msa1117550:CDS 50.0%
TAACGTGGGATTGCGACCTA+TGG - chr7_3:65959031-65959050 Msa1117550:intron 50.0%
!! ACCTATGGTGTCACCATGAC+AGG - chr7_3:65959046-65959065 Msa1117550:intron 50.0%
ACCTGTCATGGTGACACCAT+AGG + chr7_3:65959050-65959069 None:intergenic 50.0%
CAAAAATTGCCTGTGGCAGG+TGG - chr7_3:65959077-65959096 Msa1117550:intron 50.0%
! GATTTTATGCCACCTGCCAC+AGG + chr7_3:65959089-65959108 None:intergenic 50.0%
! CCCCTAACTTGCAAAGCTTG+AGG - chr7_3:65959134-65959153 Msa1117550:intron 50.0%
GGCTTCGTAGAACCAAGACT+TGG - chr7_3:65959194-65959213 Msa1117550:intron 50.0%
GAACCAAGACTTGGCTAGCA+TGG - chr7_3:65959203-65959222 Msa1117550:intron 50.0%
TTTGGCAGGTCCTTGCCTTT+AGG - chr7_3:65959315-65959334 Msa1117550:intron 50.0%
TTGGCAGGTCCTTGCCTTTA+GGG - chr7_3:65959316-65959335 Msa1117550:intron 50.0%
ACAATATGGGGAGGAGCTTC+AGG + chr7_3:65959350-65959369 None:intergenic 50.0%
! TGGGTTGACCGGTCTATCTA+AGG - chr7_3:65959391-65959410 Msa1117550:intron 50.0%
TTTGGCACAGACACACAGCT+AGG + chr7_3:65959756-65959775 None:intergenic 50.0%
GTTGCATTGCACAGCATCCA+AGG - chr7_3:65960122-65960141 Msa1117550:intron 50.0%
AGAACCACCGTGTAGTATGG+TGG + chr7_3:65960226-65960245 None:intergenic 50.0%
GCCGGGAAAGAATACCTAAC+AGG + chr7_3:65960431-65960450 None:intergenic 50.0%
CCAACTGGGCTTGAAAACTG+TGG + chr7_3:65961191-65961210 None:intergenic 50.0%
!! CCACAGTTTTCAAGCCCAGT+TGG - chr7_3:65961188-65961207 Msa1117550:intron 50.0%
! ACACTCCCCTCGGTTTGAAA+TGG + chr7_3:65961406-65961425 None:intergenic 50.0%
TGGCGTGTCCAGATTAGAAG+TGG + chr7_3:65961696-65961715 None:intergenic 50.0%
CCTACAGCGGTTTGTCTAAC+GGG - chr7_3:65961743-65961762 Msa1117550:intron 50.0%
CTACAGCGGTTTGTCTAACG+GGG - chr7_3:65961744-65961763 Msa1117550:intron 50.0%
ACAGAGGCAGAAGTAGAGGA+AGG - chr7_3:65961836-65961855 Msa1117550:intron 50.0%
TTGTTGTCTGGCTGTCATCC+CGG + chr7_3:65962056-65962075 None:intergenic 50.0%
AGAGTTTAGCCCCATTGAGG+AGG - chr7_3:65962453-65962472 Msa1117550:CDS 50.0%
CGTTGAGATCCTCCTCAATG+GGG + chr7_3:65962465-65962484 None:intergenic 50.0%
TGAGGAGGATCTCAACGATG+GGG - chr7_3:65962468-65962487 Msa1117550:exon 50.0%
GAGGCAGAGAGAGTAGTTGC+AGG + chr7_3:65957416-65957435 None:intergenic 55.0%
GGTGGGAGGATCAGATTCAG+AGG + chr7_3:65957435-65957454 None:intergenic 55.0%
! GGAAAAGTGTGCCGTGAACC+GGG - chr7_3:65958653-65958672 Msa1117550:CDS 55.0%
TTCTCTTGCGCCAGTGGTGA+AGG + chr7_3:65958696-65958715 None:intergenic 55.0%
ATGCTCTTCTCTTGCGCCAG+TGG + chr7_3:65958702-65958721 None:intergenic 55.0%
CAACGGTGCAGCTGCTGATA+AGG + chr7_3:65958748-65958767 None:intergenic 55.0%
AGCAGCTGCACCGTTGCATT+TGG - chr7_3:65958752-65958771 Msa1117550:intron 55.0%
TGGGAACGATGAGCCATGCT+TGG + chr7_3:65961304-65961323 None:intergenic 55.0%
CGTTCCCAAGAATGCAGCTG+CGG - chr7_3:65961316-65961335 Msa1117550:intron 55.0%
ATCGCGGCCATTTCAAACCG+AGG - chr7_3:65961396-65961415 Msa1117550:intron 55.0%
TCGCGGCCATTTCAAACCGA+GGG - chr7_3:65961397-65961416 Msa1117550:intron 55.0%
CAACGCAGCATCACCTACAG+CGG - chr7_3:65961730-65961749 Msa1117550:intron 55.0%
CCCGTTAGACAAACCGCTGT+AGG + chr7_3:65961746-65961765 None:intergenic 55.0%
TCTAACGGGGACAGACGTAG+AGG - chr7_3:65961757-65961776 Msa1117550:intron 55.0%
TCCCAAGAATGCAGCTGCGG+AGG - chr7_3:65961319-65961338 Msa1117550:intron 60.0%
GCCTCCGCAGCTGCATTCTT+GGG + chr7_3:65961323-65961342 None:intergenic 60.0%
TGCCTCCGCAGCTGCATTCT+TGG + chr7_3:65961324-65961343 None:intergenic 60.0%
CGCGGCCATTTCAAACCGAG+GGG - chr7_3:65961398-65961417 Msa1117550:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 65957358 65962513 65957358 ID=Msa1117550;Name=Msa1117550
chr7_3 mRNA 65957358 65962513 65957358 ID=Msa1117550-mRNA-1;Parent=Msa1117550;Name=Msa1117550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=31|0.4|0.5|0.66|1|1|6|0|422
chr7_3 exon 65957358 65957429 65957358 ID=Msa1117550-mRNA-1:exon:15846;Parent=Msa1117550-mRNA-1
chr7_3 exon 65957772 65958692 65957772 ID=Msa1117550-mRNA-1:exon:15845;Parent=Msa1117550-mRNA-1
chr7_3 exon 65960459 65960548 65960459 ID=Msa1117550-mRNA-1:exon:15844;Parent=Msa1117550-mRNA-1
chr7_3 exon 65961074 65961130 65961074 ID=Msa1117550-mRNA-1:exon:15843;Parent=Msa1117550-mRNA-1
chr7_3 exon 65961912 65961972 65961912 ID=Msa1117550-mRNA-1:exon:15842;Parent=Msa1117550-mRNA-1
chr7_3 exon 65962415 65962513 65962415 ID=Msa1117550-mRNA-1:exon:15841;Parent=Msa1117550-mRNA-1
chr7_3 five_prime_UTR 65962483 65962513 65962483 ID=Msa1117550-mRNA-1:five_prime_utr;Parent=Msa1117550-mRNA-1
chr7_3 CDS 65962415 65962482 65962415 ID=Msa1117550-mRNA-1:cds;Parent=Msa1117550-mRNA-1
chr7_3 CDS 65961912 65961972 65961912 ID=Msa1117550-mRNA-1:cds;Parent=Msa1117550-mRNA-1
chr7_3 CDS 65961074 65961130 65961074 ID=Msa1117550-mRNA-1:cds;Parent=Msa1117550-mRNA-1
chr7_3 CDS 65960459 65960548 65960459 ID=Msa1117550-mRNA-1:cds;Parent=Msa1117550-mRNA-1
chr7_3 CDS 65957772 65958692 65957772 ID=Msa1117550-mRNA-1:cds;Parent=Msa1117550-mRNA-1
chr7_3 CDS 65957358 65957429 65957358 ID=Msa1117550-mRNA-1:cds;Parent=Msa1117550-mRNA-1
Gene Sequence

>Msa1117550

ATGGCTTCAGACAAAGAAGCTGTTCCTGCAACTACTCTCTCTGCCTCTGAATCTGATCCTCCCACCATGTTTGACAGGAGTATTATCAAAAAGGAACATCCTTCTACTGTGTTTTATGAGGATGATGAGTCTTCCTTATCAGCAGCTGCACCGTTGCATTTGGCGAGTTCTCTACCAAACCACCATGTCCTTGCCTTTAGGGATATAGCTCCTGAAGCTCCTCCCCATATTGTAATAATTCCGAAAGCTAGAGATGGGTTGACCGGTCTATCTAAGGCTCAAGCCCCACAGTTTTCAAGCCCAGTTGGGTTGAATAATATTACACTCGGTGAAGAACGACAATCAACTCAAAAAAGGAAAAGAACAAGGTTTACCCCTGGGGAAGATAAAGTTCTCATCCAAGCATGGCTCATCGTTCCCAAGAATGCAGCTGCGGAGGCAAATCAAAGAGTAGATTCCTTTTGGCTAAGAATTAAGAATAATTACAACGAGCATCGCGGCCATTTCAAACCGAGGGGAGTGTCACAAATAAAATCGCGATGGCATAAGTTGAATAGCATAGTTCATAAATTTGTAGGGTGCTACAAAGTAGCCTTTGAGAAAAAGAAAAGTGGTAGCTCTGAGTCTGACATCATGGGAGATGCATATACACTTTATTATCAAGATGAAGGTGAACAGTTCAAGTTAGAGTATGCATGGCGATTGTTGAAAGATGAACCTAAATGGTCAAATACATCATTTGAAGGAGGTAGTAAGAGAACCAAGATTTCTGCTTCAGGAGCATACTCAACCACTTCTAATCTGGACACGCCATCAAGTTGTGAATACAACGCAGCATCACCTACAGCGGTTTGTCTAACGGGGACAGACGTAGAGGAAAGAAAGGGAAAATCAAAATCGGAAGAAACATCTTCGGTGCTTTGTCTTTGTCAAACAGAGGCAGAAGTAGAGGAAGGAAAGCAAAAATCAAAATCGGAGGAAACATCTTCTGCTAATGTTGAGCTAATTGATGTGAAAGAGATTCCAAAGACAAAAGTTCTCGTCATGGCAGAAATGGCACGTGTCCAAGATGAACAAAATAAGTTGAAGGAGAAAGAGTTGAATCTAAAGGAGAGAGAGTTTGAGTTGGAGTTCCTCTTTAAGGATATATCCGGGATGACAGCCAGACAACAACGAGATCATGAGATGTTGTGTAATGATTACGGGATAGAGTTTAGCCCCATTGAGGAGGATCTCAACGATGGGGAGCTTCGAAGAGTGTCAGTTTAG

Protein sequence

>Msa1117550

MASDKEAVPATTLSASESDPPTMFDRSIIKKEHPSTVFYEDDESSLSAAAPLHLASSLPNHHVLAFRDIAPEAPPHIVIIPKARDGLTGLSKAQAPQFSSPVGLNNITLGEERQSTQKRKRTRFTPGEDKVLIQAWLIVPKNAAAEANQRVDSFWLRIKNNYNEHRGHFKPRGVSQIKSRWHKLNSIVHKFVGCYKVAFEKKKSGSSESDIMGDAYTLYYQDEGEQFKLEYAWRLLKDEPKWSNTSFEGGSKRTKISASGAYSTTSNLDTPSSCEYNAASPTAVCLTGTDVEERKGKSKSEETSSVLCLCQTEAEVEEGKQKSKSEETSSANVELIDVKEIPKTKVLVMAEMARVQDEQNKLKEKELNLKEREFELEFLFKDISGMTARQQRDHEMLCNDYGIEFSPIEEDLNDGELRRVSV*