AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369150 MtrunA17_Chr8g0384281 97.610 502 12 0 1 502 1 502 0.0 1014
Msa1369150 MtrunA17_Chr4g0047041 32.026 153 104 0 341 493 143 295 3.44e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369150 AT1G64880.1 64.502 462 151 6 44 502 64 515 0.0 566
Msa1369150 AT2G33800.1 32.075 159 108 0 335 493 137 295 2.32e-18 86.3

Find 150 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTATGTTTGATCAATA+AGG 0.164879 tig0018755:-83639 Msa1369150:three_prime_UTR
TTGAGAGCATCTGGAGCTTT+AGG 0.197064 tig0018755:+85445 None:intergenic
GAGAGAAGAATGAGAGATTA+AGG 0.199671 tig0018755:-87452 Msa1369150:CDS
TTCTGCAGCATAAGCTTAAT+AGG 0.213549 tig0018755:-87038 Msa1369150:CDS
ATCCCCTGAATTTACCTAAA+TGG 0.224423 tig0018755:+83614 None:intergenic
CGGACTGAGTATAGGGTTAT+TGG 0.254625 tig0018755:-87111 Msa1369150:CDS
CCGTAATTGGCAGGGTTATC+AGG 0.268269 tig0018755:+86979 None:intergenic
AAGAAGTTCCATCACTATTC+TGG 0.272614 tig0018755:+87500 None:intergenic
CCGGCTAGGTTCTCGTTTCC+CGG 0.285543 tig0018755:+88050 None:intergenic
TGAGAGCATCTGGAGCTTTA+GGG 0.292106 tig0018755:+85446 None:intergenic
ATCTGGAGCTTTAGGGCCTT+TGG 0.294046 tig0018755:+85453 None:intergenic
CGCTTGACGATGCTTATAAA+TGG 0.295636 tig0018755:-87176 Msa1369150:CDS
CTTATCTTAAATATTATAAC+TGG 0.296697 tig0018755:+83509 None:intergenic
GATGTTAAGTTTAGTGCTTC+TGG 0.297986 tig0018755:-83830 Msa1369150:three_prime_UTR
CGCAAAAGGAACAATAATTT+AGG 0.307972 tig0018755:-83673 Msa1369150:three_prime_UTR
TGATCAATAAGGGTCCATTT+AGG 0.320990 tig0018755:-83628 Msa1369150:three_prime_UTR
GCTTTATGTTTGATCAATAA+GGG 0.326101 tig0018755:-83638 Msa1369150:three_prime_UTR
GGGTCCATTTAGGTAAATTC+AGG 0.326288 tig0018755:-83618 Msa1369150:three_prime_UTR
AACTTCTCTTGGACATCCTT+TGG 0.327728 tig0018755:+83897 None:intergenic
AAAACCAGCTAAATGTAGTA+TGG 0.331398 tig0018755:+84185 None:intergenic
TTGTTCCAAGGTATCCATAT+TGG 0.331911 tig0018755:+86930 None:intergenic
GACGAAGTTCTCACTGTTTA+CGG 0.332230 tig0018755:+87998 None:intergenic
CTTGTCAATAACATCAAGTT+TGG 0.343906 tig0018755:+86798 None:intergenic
TGCATTTACGTGTGAACATT+AGG 0.346634 tig0018755:-83734 Msa1369150:three_prime_UTR
TTGCTGAATGAGACCGTAAT+TGG 0.347603 tig0018755:+86966 None:intergenic
CATGTTTACTTGCCATGAAT+TGG 0.357108 tig0018755:-83773 Msa1369150:three_prime_UTR
GCTGAACTTGAGTATACATT+TGG 0.357489 tig0018755:-86757 Msa1369150:CDS
TGAGAGATTAAGGGCTGGTT+TGG 0.358180 tig0018755:-87442 Msa1369150:CDS
TCTGCAGCATAAGCTTAATA+GGG 0.363272 tig0018755:-87037 Msa1369150:CDS
TGGCCTGCTTCCACTGCAAC+TGG 0.368005 tig0018755:-84234 Msa1369150:CDS
TGTTCCAAGGTATCCATATT+GGG 0.371200 tig0018755:+86931 None:intergenic
AGCTCCAGATGCTCTCAATA+AGG 0.374070 tig0018755:-85440 Msa1369150:intron
TAAGCTTCGGACTGAGTATA+GGG 0.382822 tig0018755:-87118 Msa1369150:CDS
AATAGTGATGGAACTTCTTA+AGG 0.389577 tig0018755:-87496 Msa1369150:CDS
ATGATTTCGAAAGGAAGTTC+AGG 0.391603 tig0018755:-87239 Msa1369150:CDS
ACTCCATAAGATCACCTTTA+GGG 0.395270 tig0018755:-87593 Msa1369150:CDS
TTAAGCTTCGGACTGAGTAT+AGG 0.395446 tig0018755:-87119 Msa1369150:CDS
CAGCTAAATGTAGTATGGTT+TGG 0.403294 tig0018755:+84190 None:intergenic
ATACCCTAAAGGTGATCTTA+TGG 0.406034 tig0018755:+87590 None:intergenic
GCTTAATAGGGCTTTGAGAT+TGG 0.406578 tig0018755:-87025 Msa1369150:CDS
CCTGATAACCCTGCCAATTA+CGG 0.407731 tig0018755:-86979 Msa1369150:CDS
CAGTGATGATGAGGAAGATC+TGG 0.420747 tig0018755:-87283 Msa1369150:CDS
AGAGAAGAATGAGAGATTAA+GGG 0.425455 tig0018755:-87451 Msa1369150:CDS
AGAAACTGTCTACCAATTCA+TGG 0.426385 tig0018755:+83761 None:intergenic
CAATTGCAACCAATGTGTTT+CGG 0.427006 tig0018755:-87617 Msa1369150:CDS
GGTACCTTATTGAGAGCATC+TGG 0.431173 tig0018755:+85436 None:intergenic
CGAGGATGGTTATGATTACA+TGG 0.431612 tig0018755:-87394 Msa1369150:CDS
ATGGATACCTTGGAACAATC+TGG 0.434043 tig0018755:-86925 Msa1369150:CDS
CAGTTCGGCCAAACTTCTCT+TGG 0.436228 tig0018755:+83886 None:intergenic
AACTCCATAAGATCACCTTT+AGG 0.436596 tig0018755:-87594 Msa1369150:CDS
AAGGATGTCCAAGAGAAGTT+TGG 0.439397 tig0018755:-83894 Msa1369150:CDS
GGAACAATCTGGATTTGAAA+AGG 0.439501 tig0018755:-86914 Msa1369150:CDS
CCTTTGTGACTTTACAAGTT+CGG 0.442059 tig0018755:+85632 None:intergenic
GCATCTTCATCTCCTTGAGC+AGG 0.449364 tig0018755:+86883 None:intergenic
CTAGTTGGATTCACGCTGGC+CGG 0.451394 tig0018755:-88069 Msa1369150:five_prime_UTR
GAGACTCTTGCCATGAAAAC+GGG 0.453113 tig0018755:+87542 None:intergenic
TAAAGTGGTTACTGAGCAAA+AGG 0.454004 tig0018755:-87070 Msa1369150:CDS
TTAGCATGTGGCAACTATAA+TGG 0.455598 tig0018755:-85496 Msa1369150:CDS
TGAATGGGTTATATTCAGTA+TGG 0.456241 tig0018755:-87672 Msa1369150:CDS
GCTTGAAAAGGAGAAGCTTA+AGG 0.457065 tig0018755:-87349 Msa1369150:CDS
AGAGACTCTTGCCATGAAAA+CGG 0.460723 tig0018755:+87541 None:intergenic
GGCAACTATAATGGTGTTGT+TGG 0.461710 tig0018755:-85487 Msa1369150:CDS
ATCATAACCATCCTCGGTCT+CGG 0.463201 tig0018755:+87401 None:intergenic
CATGGCAAGTAAACATGAAA+AGG 0.467387 tig0018755:+83779 None:intergenic
TAGAGTAGCATCAATCTGAA+TGG 0.468186 tig0018755:-87688 Msa1369150:exon
ATCAGAGTAACTAGTCTAGT+TGG 0.474060 tig0018755:-88084 Msa1369150:five_prime_UTR
ACAGCCTTAACTGTATTATG+AGG 0.478809 tig0018755:+84039 None:intergenic
AAATCCTCATAATACAGTTA+AGG 0.482904 tig0018755:-84043 Msa1369150:CDS
ATCGTCAAGCGTATCCGCTT+CGG 0.484924 tig0018755:+87188 None:intergenic
TTAAGGAGGTGGAGAAGGAT+AGG 0.486790 tig0018755:-87479 Msa1369150:CDS
ACTGCAACTGGCATGAAGGC+CGG 0.491223 tig0018755:-84222 Msa1369150:CDS
ATGCCAGTTGCAGTGGAAGC+AGG 0.491431 tig0018755:+84231 None:intergenic
TCTTATCGAGAAGCTTGAAA+AGG 0.493738 tig0018755:-87361 Msa1369150:CDS
TGAATGAGACCGTAATTGGC+AGG 0.497884 tig0018755:+86970 None:intergenic
CAAACCATACTACATTTAGC+TGG 0.497943 tig0018755:-84189 Msa1369150:CDS
GGTCCATTTAGGTAAATTCA+GGG 0.503602 tig0018755:-83617 Msa1369150:three_prime_UTR
AAGAATGAGAGATTAAGGGC+TGG 0.507014 tig0018755:-87447 Msa1369150:CDS
TAATTCGATAGGTGTATCTC+TGG 0.507614 tig0018755:-84254 Msa1369150:intron
AGAGTAGCATCAATCTGAAT+GGG 0.513625 tig0018755:-87687 Msa1369150:exon
TGAGTATACATTTGGAAGGA+AGG 0.514885 tig0018755:-86749 Msa1369150:CDS
TTGATCAAACATAAAGCAAA+GGG 0.516314 tig0018755:+83644 None:intergenic
GGCCTTCATGCCAGTTGCAG+TGG 0.518184 tig0018755:+84224 None:intergenic
CCGGAAAATACATGTGAAGT+TGG 0.530784 tig0018755:-88031 Msa1369150:five_prime_UTR
AGTTACTCTGATGGCACAAA+GGG 0.533436 tig0018755:+88095 None:intergenic
ATTTAGGTAAATTCAGGGGA+TGG 0.535484 tig0018755:-83612 Msa1369150:three_prime_UTR
AATACTTCTCGACCACAGTT+CGG 0.537088 tig0018755:+83871 None:intergenic
CTCGGTCTCGGCATCAATGT+CGG 0.538282 tig0018755:+87413 None:intergenic
TATGGTTTGGACTATTCTGC+CGG 0.538461 tig0018755:+84203 None:intergenic
TTTGAGATTGGTGCAGTGGA+AGG 0.538637 tig0018755:-87013 Msa1369150:CDS
TTACGTGTGAACATTAGGTA+TGG 0.538930 tig0018755:-83729 Msa1369150:three_prime_UTR
GATGGAACTTCTTAAGGAGG+TGG 0.540444 tig0018755:-87490 Msa1369150:CDS
ACTTCTTAAGGAGGTGGAGA+AGG 0.540719 tig0018755:-87484 Msa1369150:CDS
GGGGCCCAATATGGATACCT+TGG 0.542164 tig0018755:-86935 Msa1369150:CDS
TAGTTGGATTCACGCTGGCC+GGG 0.547772 tig0018755:-88068 Msa1369150:five_prime_UTR
TTCTGATGCCAGAATAGTGA+TGG 0.552389 tig0018755:-87508 Msa1369150:CDS
ACTCATGAATCGTCTTAAAG+TGG 0.555879 tig0018755:-87085 Msa1369150:CDS
GGTCTCATTCAGCAAGAACA+AGG 0.560430 tig0018755:-86958 Msa1369150:CDS
CATGTAATCATAACCATCCT+CGG 0.563559 tig0018755:+87395 None:intergenic
GGGCTTTGAGATTGGTGCAG+TGG 0.565478 tig0018755:-87017 Msa1369150:CDS
TTCCACTGCAACTGGCATGA+AGG 0.566604 tig0018755:-84226 Msa1369150:CDS
TCGAGAAGTATTTGTTGTGA+TGG 0.567736 tig0018755:-83860 Msa1369150:exon
TCTGGATGCTAATCAGAAGA+AGG 0.568563 tig0018755:-87265 Msa1369150:CDS
CCGGGAAACGAGAACCTAGC+CGG 0.568605 tig0018755:-88050 Msa1369150:five_prime_UTR
TACATTTGGAAGGAAGGGTA+AGG 0.569640 tig0018755:-86743 Msa1369150:CDS
ATTGATCAAACATAAAGCAA+AGG 0.569753 tig0018755:+83643 None:intergenic
GAAACTACCTTTCGGAAAAG+TGG 0.574004 tig0018755:+86655 None:intergenic
CCATGAAAACGGGAACATGA+AGG 0.574072 tig0018755:+87552 None:intergenic
GGAGAAGCTTAAGGAGACCT+CGG 0.574929 tig0018755:-87340 Msa1369150:CDS
ATTGTGTTCGGTTTGACAAG+CGG 0.578705 tig0018755:-83574 Msa1369150:three_prime_UTR
ATTGATGCCGAGACCGAGGA+TGG 0.579776 tig0018755:-87408 Msa1369150:CDS
AAGGAAGGGTAAGGCTCTAG+AGG 0.583467 tig0018755:-86734 Msa1369150:CDS
AGAAGGTTGATGATTTCGAA+AGG 0.585774 tig0018755:-87248 Msa1369150:CDS
TTCAAATCCAGATTGTTCCA+AGG 0.587564 tig0018755:+86918 None:intergenic
GAGTATACATTTGGAAGGAA+GGG 0.590258 tig0018755:-86748 Msa1369150:CDS
GTAGTGGCTGCATACCCTAA+AGG 0.593279 tig0018755:+87579 None:intergenic
TATGGAGTTCCGAAACACAT+TGG 0.593450 tig0018755:+87608 None:intergenic
AACTTGAGTATACATTTGGA+AGG 0.597121 tig0018755:-86753 Msa1369150:CDS
GTCTCATTCAGCAAGAACAA+GGG 0.598152 tig0018755:-86957 Msa1369150:CDS
GTTCCAGATTGAAACGCCAA+AGG 0.599069 tig0018755:-83913 Msa1369150:intron
TCATCACTGTCAGAATCAGT+CGG 0.599404 tig0018755:+87297 None:intergenic
TGTTATTGACAAGAGACTTG+AGG 0.599515 tig0018755:-86788 Msa1369150:CDS
GATTCAGAATTTCACCGAAG+CGG 0.607335 tig0018755:-87202 Msa1369150:CDS
AAGGAGGATAAACCTGCTCA+AGG 0.610936 tig0018755:-86895 Msa1369150:CDS
TAGTTACTCTGATGGCACAA+AGG 0.614479 tig0018755:+88094 None:intergenic
TGGTTACTGAGCAAAAGGAT+AGG 0.618062 tig0018755:-87065 Msa1369150:CDS
TATATTCAGTATGGTAGACA+CGG 0.630793 tig0018755:-87663 Msa1369150:CDS
AACTAGACTAGTTACTCTGA+TGG 0.631464 tig0018755:+88086 None:intergenic
ACAATCTGGATTTGAAAAGG+AGG 0.632065 tig0018755:-86911 Msa1369150:CDS
CGACATTGATGCCGAGACCG+AGG 0.635504 tig0018755:-87412 Msa1369150:CDS
GAATGAGACCGTAATTGGCA+GGG 0.636313 tig0018755:+86971 None:intergenic
TCTCATTCAGCAAGAACAAG+GGG 0.641036 tig0018755:-86956 Msa1369150:CDS
AGTGATGGAACTTCTTAAGG+AGG 0.643210 tig0018755:-87493 Msa1369150:CDS
TATTTGTTGTGATGGACATG+AGG 0.643655 tig0018755:-83852 Msa1369150:exon
AGAGAAGTTTGGCCGAACTG+TGG 0.645250 tig0018755:-83883 Msa1369150:CDS
GGAACATGAAGGTAATGTAG+TGG 0.647838 tig0018755:+87563 None:intergenic
ATTTCGAAAGGAAGTTCAGG+AGG 0.648062 tig0018755:-87236 Msa1369150:CDS
TGCTGCTGACAACGACGATG+AGG 0.653652 tig0018755:-86863 Msa1369150:CDS
AGAGATCAAAGATCTTGCAG+AGG 0.657591 tig0018755:-86710 Msa1369150:CDS
CCGAACTTGTAAAGTCACAA+AGG 0.657693 tig0018755:-85632 Msa1369150:intron
TATACTGCTATGTTAGCATG+TGG 0.662521 tig0018755:-85508 Msa1369150:CDS
TGATTCTGACAGTGATGATG+AGG 0.665645 tig0018755:-87292 Msa1369150:CDS
GTCCATTTAGGTAAATTCAG+GGG 0.667282 tig0018755:-83616 Msa1369150:three_prime_UTR
GCATTATGTAGAGCGACACG+AGG 0.669562 tig0018755:-84513 Msa1369150:CDS
TTCGTATCGATTCAACTCCG+AGG 0.679730 tig0018755:+87323 None:intergenic
TGTCTTCAAAGCGCTTAATG+CGG 0.682894 tig0018755:-84019 Msa1369150:intron
TAGTCTAGTTGGATTCACGC+TGG 0.687044 tig0018755:-88073 Msa1369150:five_prime_UTR
TCATTCAGCAAGAACAAGGG+GGG 0.688106 tig0018755:-86954 Msa1369150:CDS
CTCATTCAGCAAGAACAAGG+GGG 0.692267 tig0018755:-86955 Msa1369150:CDS
GAGGATGGTTATGATTACAT+GGG 0.717963 tig0018755:-87393 Msa1369150:CDS
GAAGTTCTCACTGTTTACGG+CGG 0.728882 tig0018755:+88001 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATCATATTGAAATAA+TGG - tig0018755:87022-87041 Msa1369150:CDS 10.0%
!! ATATGAATTAACTTTATGAA+TGG + tig0018755:83806-83825 None:intergenic 15.0%
!!! TTCATTTTAAATGAATTGAA+GGG - tig0018755:85165-85184 Msa1369150:intron 15.0%
!!! ACCATTTTTATGTTTTTTTT+TGG - tig0018755:85883-85902 Msa1369150:intron 15.0%
!! ACCAAAAAAAAACATAAAAA+TGG + tig0018755:85887-85906 None:intergenic 15.0%
!! AATAATAAAAAGATGAAAAG+TGG + tig0018755:86702-86721 None:intergenic 15.0%
!!! TTTTTTTTTTTTGTCTTCAT+AGG - tig0018755:87524-87543 Msa1369150:CDS 15.0%
!! GTAAAAATTTATTGAAATAC+TGG + tig0018755:87640-87659 None:intergenic 15.0%
!!! TGATTTTAAAATATTGTGTT+CGG - tig0018755:88017-88036 Msa1369150:five_prime_UTR 15.0%
!! CTTATCTTAAATATTATAAC+TGG + tig0018755:88097-88116 None:intergenic 15.0%
!! AGAAAAAGACAACATATTAT+TGG - tig0018755:84782-84801 Msa1369150:intron 20.0%
!!! TTTATATCAAGTTTCAAGTA+AGG - tig0018755:85053-85072 Msa1369150:intron 20.0%
!!! GTTCATTTTAAATGAATTGA+AGG - tig0018755:85164-85183 Msa1369150:intron 20.0%
!!! CCTTTTTTTCACTTATAATT+GGG + tig0018755:85559-85578 None:intergenic 20.0%
!!! TCCTTTTTTTCACTTATAAT+TGG + tig0018755:85560-85579 None:intergenic 20.0%
!! ATTATAAGTGAAAAAAAGGA+AGG - tig0018755:85560-85579 Msa1369150:intron 20.0%
!! TTATAAGTGAAAAAAAGGAA+GGG - tig0018755:85561-85580 Msa1369150:intron 20.0%
!!! AAAAAGAAGAAATTTTCCAA+AGG + tig0018755:85722-85741 None:intergenic 20.0%
!!! ACAAATAAAAGCATTTTTGT+AGG - tig0018755:85754-85773 Msa1369150:intron 20.0%
!! TAAAGCAAAAACAAGAATAT+GGG + tig0018755:85849-85868 None:intergenic 20.0%
!! ATAAAGCAAAAACAAGAATA+TGG + tig0018755:85850-85869 None:intergenic 20.0%
!! AAAACATAAAAATGGTAAGT+GGG + tig0018755:85879-85898 None:intergenic 20.0%
!! AAAAACATAAAAATGGTAAG+TGG + tig0018755:85880-85899 None:intergenic 20.0%
!!! TTTTGGTTAAATAATCGTTT+TGG - tig0018755:85900-85919 Msa1369150:intron 20.0%
!!! TTTGACCAATGTTTTAAATT+TGG - tig0018755:86866-86885 Msa1369150:CDS 20.0%
!!! ATACACCAAATTTAAAACAT+TGG + tig0018755:86874-86893 None:intergenic 20.0%
!!! TTTGCTGAAACTTTATATTT+TGG + tig0018755:86927-86946 None:intergenic 20.0%
!! TGGTTTATTTGAATATAATC+AGG - tig0018755:87042-87061 Msa1369150:CDS 20.0%
!! AAGAAACTCTATGATATAAA+CGG + tig0018755:87200-87219 None:intergenic 20.0%
! AAAAAAGAAAAAGGAACAGA+TGG + tig0018755:83630-83649 None:intergenic 25.0%
! CGGAAAAGTAAAAAAGAAAA+AGG + tig0018755:83639-83658 None:intergenic 25.0%
!! TAAGTGCTTTTCATTTTCAT+TGG - tig0018755:83722-83741 Msa1369150:three_prime_UTR 25.0%
! GCAAAAAATTGATAAGTTTG+AGG - tig0018755:84452-84471 Msa1369150:intron 25.0%
!! ATTTTAAATGAATTGAAGGG+TGG - tig0018755:85168-85187 Msa1369150:intron 25.0%
! AACTAAAAAGTTGTATTGGA+GGG + tig0018755:85417-85436 None:intergenic 25.0%
! ATATAAAACCCTCTTCATTT+GGG + tig0018755:85442-85461 None:intergenic 25.0%
! AATATAAAACCCTCTTCATT+TGG + tig0018755:85443-85462 None:intergenic 25.0%
! CCCAATTATAAGTGAAAAAA+AGG - tig0018755:85556-85575 Msa1369150:intron 25.0%
! AACAAACTTAATACTTCCTT+TGG - tig0018755:85593-85612 Msa1369150:intron 25.0%
!!! GAATTTTAATGTTCCATATG+TGG - tig0018755:85780-85799 Msa1369150:intron 25.0%
! TTTACAAACAAGTATAGACA+CGG + tig0018755:85822-85841 None:intergenic 25.0%
! AAGACTTAATAAGATATTGC+TGG + tig0018755:86191-86210 None:intergenic 25.0%
! AAATAGATCCATATCTCTTA+TGG + tig0018755:86306-86325 None:intergenic 25.0%
! TCAGAAAAACATGAATCAAT+AGG + tig0018755:86363-86382 None:intergenic 25.0%
!!! TGTTTTTCTGAGATTTGTAT+TGG - tig0018755:86372-86391 Msa1369150:intron 25.0%
! TCAATCTATCATCACATAAT+TGG + tig0018755:86424-86443 None:intergenic 25.0%
! ATGTGATGATAGATTGATAT+AGG - tig0018755:86427-86446 Msa1369150:intron 25.0%
! TGATAGATTGATATAGGTTA+TGG - tig0018755:86433-86452 Msa1369150:intron 25.0%
!! TGAGATATTTGGTTCATAAT+TGG - tig0018755:86464-86483 Msa1369150:intron 25.0%
! ATTGCATAATAGAAAACATC+TGG - tig0018755:86534-86553 Msa1369150:intron 25.0%
!!! ACTAAATCAGTTATTTTCCT+TGG - tig0018755:86645-86664 Msa1369150:intron 25.0%
! CAATTTATAATAATCAGCCA+AGG + tig0018755:86665-86684 None:intergenic 25.0%
!! GATGAAAAGTGGAAATTTTT+AGG + tig0018755:86691-86710 None:intergenic 25.0%
! GAAATGTAAATAAAAACTGC+TGG + tig0018755:86775-86794 None:intergenic 25.0%
! AACATCTTATAAAAAGACCA+AGG - tig0018755:87138-87157 Msa1369150:CDS 25.0%
! AGAAACTCTATGATATAAAC+GGG + tig0018755:87199-87218 None:intergenic 25.0%
!!! TTTTAAGAATGTCAAGTCAA+AGG - tig0018755:87437-87456 Msa1369150:CDS 25.0%
! AAATCCTCATAATACAGTTA+AGG - tig0018755:87560-87579 Msa1369150:CDS 25.0%
! AATATCAGCTAAAATGTCAT+AGG + tig0018755:87662-87681 None:intergenic 25.0%
! AGGACAAAAAGAATATTCAA+CGG + tig0018755:87807-87826 None:intergenic 25.0%
! GCGTATATGAATGAAAAATT+CGG + tig0018755:87913-87932 None:intergenic 25.0%
!! TTTTCATTCATATACGCAAA+AGG - tig0018755:87916-87935 Msa1369150:intron 25.0%
! TTGATCAAACATAAAGCAAA+GGG + tig0018755:87962-87981 None:intergenic 25.0%
! ATTGATCAAACATAAAGCAA+AGG + tig0018755:87963-87982 None:intergenic 25.0%
! TGCTTTATGTTTGATCAATA+AGG - tig0018755:87964-87983 Msa1369150:intron 25.0%
! GCTTTATGTTTGATCAATAA+GGG - tig0018755:87965-87984 Msa1369150:intron 25.0%
! AAAGCAAGCATTGTATAATG+TGG + tig0018755:83842-83861 None:intergenic 30.0%
!! TGAATGGGTTATATTCAGTA+TGG - tig0018755:83931-83950 Msa1369150:intron 30.0%
TATATTCAGTATGGTAGACA+CGG - tig0018755:83940-83959 Msa1369150:intron 30.0%
! AATAGTGATGGAACTTCTTA+AGG - tig0018755:84107-84126 Msa1369150:intron 30.0%
AGAGAAGAATGAGAGATTAA+GGG - tig0018755:84152-84171 Msa1369150:intron 30.0%
CTTGTCAATAACATCAAGTT+TGG + tig0018755:84808-84827 None:intergenic 30.0%
AACTTGAGTATACATTTGGA+AGG - tig0018755:84850-84869 Msa1369150:intron 30.0%
! ACTTGCCTAATTTTCTGATT+CGG - tig0018755:84973-84992 Msa1369150:intron 30.0%
CAATCTGCATTTAGCAAATA+GGG - tig0018755:85105-85124 Msa1369150:intron 30.0%
!!! TTTTAACTTGCTAAAACTCG+AGG + tig0018755:85139-85158 None:intergenic 30.0%
ACTAAAAAGTTGTATTGGAG+GGG + tig0018755:85416-85435 None:intergenic 30.0%
GAACTAAAAAGTTGTATTGG+AGG + tig0018755:85418-85437 None:intergenic 30.0%
TATAAAACCCTCTTCATTTG+GGG + tig0018755:85441-85460 None:intergenic 30.0%
TGGAAGAAATAGAGTACATT+GGG + tig0018755:85499-85518 None:intergenic 30.0%
! TGAAAAAAAGGAAGGGTTTT+GGG - tig0018755:85568-85587 Msa1369150:intron 30.0%
! ACCAGTAGCCTTTTATAATT+GGG + tig0018755:85620-85639 None:intergenic 30.0%
! AACCAGTAGCCTTTTATAAT+TGG + tig0018755:85621-85640 None:intergenic 30.0%
AATTTGAATACCTTGTCCTT+TGG - tig0018755:85703-85722 Msa1369150:intron 30.0%
! AAGAAATTTTCCAAAGGACA+AGG + tig0018755:85716-85735 None:intergenic 30.0%
TTACAAACAAGTATAGACAC+GGG + tig0018755:85821-85840 None:intergenic 30.0%
!!! ATCGTTTTGGTTGTTGTATA+TGG - tig0018755:85913-85932 Msa1369150:intron 30.0%
! TCAATTTTACATCAAAACCC+TGG + tig0018755:85941-85960 None:intergenic 30.0%
AAGAAAATATGAGAGCAAGT+GGG + tig0018755:86031-86050 None:intergenic 30.0%
TAAGAAAATATGAGAGCAAG+TGG + tig0018755:86032-86051 None:intergenic 30.0%
! ACTTGCTCTCATATTTTCTT+AGG - tig0018755:86031-86050 Msa1369150:intron 30.0%
TGTTTCAATTCTCATGATCT+AGG - tig0018755:86055-86074 Msa1369150:intron 30.0%
GTTTCAATTCTCATGATCTA+GGG - tig0018755:86056-86075 Msa1369150:intron 30.0%
GTTAATAAGCTTGCAACTAT+TGG + tig0018755:86341-86360 None:intergenic 30.0%
! ATTTGTATTGGCAGCTATAT+TGG - tig0018755:86384-86403 Msa1369150:intron 30.0%
! TTTGTATTGGCAGCTATATT+GGG - tig0018755:86385-86404 Msa1369150:intron 30.0%
! TGGTTAGTCATTGAGATATT+TGG - tig0018755:86453-86472 Msa1369150:intron 30.0%
!!! CTTTTTCAGAATGAATTGAC+AGG - tig0018755:86813-86832 Msa1369150:CDS 30.0%
! TGGTGTATTCTTGAGAATTT+TGG - tig0018755:86886-86905 Msa1369150:CDS 30.0%
TTACTTGTCTCAAATGAGTA+AGG - tig0018755:87256-87275 Msa1369150:CDS 30.0%
TGTCATCTGTATAATTCGAT+AGG - tig0018755:87338-87357 Msa1369150:CDS 30.0%
AAAACCAGCTAAATGTAGTA+TGG + tig0018755:87421-87440 None:intergenic 30.0%
! TTTTTGTCTTCATAGGTTGT+TGG - tig0018755:87531-87550 Msa1369150:CDS 30.0%
CGCAAAAGGAACAATAATTT+AGG - tig0018755:87930-87949 Msa1369150:intron 30.0%
! AACTAGACTAGTTACTCTGA+TGG + tig0018755:83520-83539 None:intergenic 35.0%
! ATCAGAGTAACTAGTCTAGT+TGG - tig0018755:83519-83538 Msa1369150:three_prime_UTR 35.0%
! CCAACTTCACATGTATTTTC+CGG + tig0018755:83575-83594 None:intergenic 35.0%
GTCAACGAAACAAATGAAAG+AGG + tig0018755:83687-83706 None:intergenic 35.0%
GCGTCAAAACACATAAAGTT+CGG + tig0018755:83886-83905 None:intergenic 35.0%
TAGAGTAGCATCAATCTGAA+TGG - tig0018755:83915-83934 Msa1369150:intron 35.0%
AGAGTAGCATCAATCTGAAT+GGG - tig0018755:83916-83935 Msa1369150:intron 35.0%
CAATTGCAACCAATGTGTTT+CGG - tig0018755:83986-84005 Msa1369150:intron 35.0%
AACTCCATAAGATCACCTTT+AGG - tig0018755:84009-84028 Msa1369150:intron 35.0%
ACTCCATAAGATCACCTTTA+GGG - tig0018755:84010-84029 Msa1369150:intron 35.0%
ATACCCTAAAGGTGATCTTA+TGG + tig0018755:84016-84035 None:intergenic 35.0%
AAGAAGTTCCATCACTATTC+TGG + tig0018755:84106-84125 None:intergenic 35.0%
GAGAGAAGAATGAGAGATTA+AGG - tig0018755:84151-84170 Msa1369150:intron 35.0%
CATGTAATCATAACCATCCT+CGG + tig0018755:84211-84230 None:intergenic 35.0%
GAGGATGGTTATGATTACAT+GGG - tig0018755:84210-84229 Msa1369150:CDS 35.0%
TCTTATCGAGAAGCTTGAAA+AGG - tig0018755:84242-84261 Msa1369150:CDS 35.0%
!! AGAAGGTTGATGATTTCGAA+AGG - tig0018755:84355-84374 Msa1369150:intron 35.0%
ATGATTTCGAAAGGAAGTTC+AGG - tig0018755:84364-84383 Msa1369150:intron 35.0%
! AGGACAAGCATTTTAAGCTT+CGG - tig0018755:84472-84491 Msa1369150:CDS 35.0%
ACTCATGAATCGTCTTAAAG+TGG - tig0018755:84518-84537 Msa1369150:CDS 35.0%
TAAAGTGGTTACTGAGCAAA+AGG - tig0018755:84533-84552 Msa1369150:CDS 35.0%
TTCTGCAGCATAAGCTTAAT+AGG - tig0018755:84565-84584 Msa1369150:intron 35.0%
TCTGCAGCATAAGCTTAATA+GGG - tig0018755:84566-84585 Msa1369150:intron 35.0%
! TGTTCCAAGGTATCCATATT+GGG + tig0018755:84675-84694 None:intergenic 35.0%
! TTGTTCCAAGGTATCCATAT+TGG + tig0018755:84676-84695 None:intergenic 35.0%
TTCAAATCCAGATTGTTCCA+AGG + tig0018755:84688-84707 None:intergenic 35.0%
GGAACAATCTGGATTTGAAA+AGG - tig0018755:84689-84708 Msa1369150:intron 35.0%
ACAATCTGGATTTGAAAAGG+AGG - tig0018755:84692-84711 Msa1369150:intron 35.0%
TGTTATTGACAAGAGACTTG+AGG - tig0018755:84815-84834 Msa1369150:intron 35.0%
GCTGAACTTGAGTATACATT+TGG - tig0018755:84846-84865 Msa1369150:intron 35.0%
TGAGTATACATTTGGAAGGA+AGG - tig0018755:84854-84873 Msa1369150:intron 35.0%
GAGTATACATTTGGAAGGAA+GGG - tig0018755:84855-84874 Msa1369150:intron 35.0%
CAACACCGAATCAGAAAATT+AGG + tig0018755:84981-85000 None:intergenic 35.0%
GCAATCTGCATTTAGCAAAT+AGG - tig0018755:85104-85123 Msa1369150:intron 35.0%
TACTCTTACTTTCTCACCTT+AGG - tig0018755:85194-85213 Msa1369150:intron 35.0%
TAAAAAGTTGTATTGGAGGG+GGG + tig0018755:85414-85433 None:intergenic 35.0%
CTAAAAAGTTGTATTGGAGG+GGG + tig0018755:85415-85434 None:intergenic 35.0%
GGGGAACTAAAAAGTTGTAT+TGG + tig0018755:85421-85440 None:intergenic 35.0%
ATAAAACCCTCTTCATTTGG+GGG + tig0018755:85440-85459 None:intergenic 35.0%
AGAAATAGAGTACATTGGGA+GGG + tig0018755:85495-85514 None:intergenic 35.0%
AAGAAATAGAGTACATTGGG+AGG + tig0018755:85496-85515 None:intergenic 35.0%
GTGGAAGAAATAGAGTACAT+TGG + tig0018755:85500-85519 None:intergenic 35.0%
CACTTATAATTGGGACCAAA+GGG + tig0018755:85550-85569 None:intergenic 35.0%
TCACTTATAATTGGGACCAA+AGG + tig0018755:85551-85570 None:intergenic 35.0%
! GTGAAAAAAAGGAAGGGTTT+TGG - tig0018755:85567-85586 Msa1369150:intron 35.0%
! GAAAAAAAGGAAGGGTTTTG+GGG - tig0018755:85569-85588 Msa1369150:intron 35.0%
!! AAAAAAAGGAAGGGTTTTGG+GGG - tig0018755:85570-85589 Msa1369150:intron 35.0%
! CCTTTTATAATTGGGACCAA+AGG + tig0018755:85612-85631 None:intergenic 35.0%
CCTTTGGTCCCAATTATAAA+AGG - tig0018755:85609-85628 Msa1369150:intron 35.0%
TCCCAATTATAAAAGGCTAC+TGG - tig0018755:85616-85635 Msa1369150:intron 35.0%
! CAATAAAAGTGCACCACATA+TGG + tig0018755:85796-85815 None:intergenic 35.0%
CCTTTGTGACTTTACAAGTT+CGG + tig0018755:85974-85993 None:intergenic 35.0%
TATACTGCTATGTTAGCATG+TGG - tig0018755:86095-86114 Msa1369150:intron 35.0%
TTAGCATGTGGCAACTATAA+TGG - tig0018755:86107-86126 Msa1369150:intron 35.0%
TCTTCAAGTCATGCTTAAGT+TGG - tig0018755:86211-86230 Msa1369150:intron 35.0%
AGATCCATATCTCTTATGGT+GGG + tig0018755:86302-86321 None:intergenic 35.0%
TAGATCCATATCTCTTATGG+TGG + tig0018755:86303-86322 None:intergenic 35.0%
! TTTGGTTCATAATTGGTGTG+AGG - tig0018755:86471-86490 Msa1369150:intron 35.0%
CAATGCATAAGACATGGATA+AGG + tig0018755:86582-86601 None:intergenic 35.0%
TTCATAACTCGAGTTACAGA+AGG - tig0018755:86720-86739 Msa1369150:CDS 35.0%
! GTTACAGAAGGTGTATTAAC+TGG - tig0018755:86732-86751 Msa1369150:CDS 35.0%
GCATTAAACATGATGCACAT+GGG + tig0018755:86976-86995 None:intergenic 35.0%
TGCATTAAACATGATGCACA+TGG + tig0018755:86977-86996 None:intergenic 35.0%
! GGATACAGATTTTACTACCT+TGG + tig0018755:87158-87177 None:intergenic 35.0%
TGATATAAACGGGCAATTAC+TGG + tig0018755:87189-87208 None:intergenic 35.0%
ATGACAAGCATAAGACATAC+AGG + tig0018755:87308-87327 None:intergenic 35.0%
TAATTCGATAGGTGTATCTC+TGG - tig0018755:87349-87368 Msa1369150:CDS 35.0%
CAGCTAAATGTAGTATGGTT+TGG + tig0018755:87416-87435 None:intergenic 35.0%
CAAACCATACTACATTTAGC+TGG - tig0018755:87414-87433 Msa1369150:CDS 35.0%
TGACCAAAAAAAGCTGAAGA+TGG - tig0018755:87468-87487 Msa1369150:CDS 35.0%
AGAGCAAACACTAAAATTGC+AGG + tig0018755:87495-87514 None:intergenic 35.0%
ACAGCCTTAACTGTATTATG+AGG + tig0018755:87567-87586 None:intergenic 35.0%
!! TCGAGAAGTATTTGTTGTGA+TGG - tig0018755:87743-87762 Msa1369150:intron 35.0%
!! TATTTGTTGTGATGGACATG+AGG - tig0018755:87751-87770 Msa1369150:intron 35.0%
GATGTTAAGTTTAGTGCTTC+TGG - tig0018755:87773-87792 Msa1369150:intron 35.0%
CATGGCAAGTAAACATGAAA+AGG + tig0018755:87827-87846 None:intergenic 35.0%
CATGTTTACTTGCCATGAAT+TGG - tig0018755:87830-87849 Msa1369150:intron 35.0%
AGAAACTGTCTACCAATTCA+TGG + tig0018755:87845-87864 None:intergenic 35.0%
TGCATTTACGTGTGAACATT+AGG - tig0018755:87869-87888 Msa1369150:intron 35.0%
TTACGTGTGAACATTAGGTA+TGG - tig0018755:87874-87893 Msa1369150:intron 35.0%
TGATCAATAAGGGTCCATTT+AGG - tig0018755:87975-87994 Msa1369150:intron 35.0%
GGTCCATTTAGGTAAATTCA+GGG - tig0018755:87986-88005 Msa1369150:intron 35.0%
GTCCATTTAGGTAAATTCAG+GGG - tig0018755:87987-88006 Msa1369150:intron 35.0%
ATCCCCTGAATTTACCTAAA+TGG + tig0018755:87992-88011 None:intergenic 35.0%
ATTTAGGTAAATTCAGGGGA+TGG - tig0018755:87991-88010 Msa1369150:intron 35.0%
! AAGCGGAGAAATTTTATTCG+AGG - tig0018755:88046-88065 Msa1369150:five_prime_UTR 35.0%
! AGCGGAGAAATTTTATTCGA+GGG - tig0018755:88047-88066 Msa1369150:five_prime_UTR 35.0%
! GAGAAATTTTATTCGAGGGA+AGG - tig0018755:88051-88070 Msa1369150:five_prime_UTR 35.0%
AGTTACTCTGATGGCACAAA+GGG + tig0018755:83511-83530 None:intergenic 40.0%
TAGTTACTCTGATGGCACAA+AGG + tig0018755:83512-83531 None:intergenic 40.0%
! TTCACATGTATTTTCCGGCT+AGG + tig0018755:83570-83589 None:intergenic 40.0%
CCGGAAAATACATGTGAAGT+TGG - tig0018755:83572-83591 Msa1369150:three_prime_UTR 40.0%
GACGAAGTTCTCACTGTTTA+CGG + tig0018755:83608-83627 None:intergenic 40.0%
GTGAAGAAGAGAAGGCAAAT+CGG + tig0018755:83659-83678 None:intergenic 40.0%
AGGAAAGAGTGAAGAAGAGA+AGG + tig0018755:83667-83686 None:intergenic 40.0%
! AGTATGGTAGACACGGTTTT+CGG - tig0018755:83947-83966 Msa1369150:intron 40.0%
TATGGAGTTCCGAAACACAT+TGG + tig0018755:83998-84017 None:intergenic 40.0%
GGAACATGAAGGTAATGTAG+TGG + tig0018755:84043-84062 None:intergenic 40.0%
AGAGACTCTTGCCATGAAAA+CGG + tig0018755:84065-84084 None:intergenic 40.0%
TTCTGATGCCAGAATAGTGA+TGG - tig0018755:84095-84114 Msa1369150:intron 40.0%
! AGTGATGGAACTTCTTAAGG+AGG - tig0018755:84110-84129 Msa1369150:intron 40.0%
AAGAATGAGAGATTAAGGGC+TGG - tig0018755:84156-84175 Msa1369150:intron 40.0%
CGAGGATGGTTATGATTACA+TGG - tig0018755:84209-84228 Msa1369150:CDS 40.0%
GCTTGAAAAGGAGAAGCTTA+AGG - tig0018755:84254-84273 Msa1369150:intron 40.0%
TCATCACTGTCAGAATCAGT+CGG + tig0018755:84309-84328 None:intergenic 40.0%
! TGATTCTGACAGTGATGATG+AGG - tig0018755:84311-84330 Msa1369150:intron 40.0%
TCTGGATGCTAATCAGAAGA+AGG - tig0018755:84338-84357 Msa1369150:intron 40.0%
ATTTCGAAAGGAAGTTCAGG+AGG - tig0018755:84367-84386 Msa1369150:intron 40.0%
GATTCAGAATTTCACCGAAG+CGG - tig0018755:84401-84420 Msa1369150:intron 40.0%
CGCTTGACGATGCTTATAAA+TGG - tig0018755:84427-84446 Msa1369150:intron 40.0%
TTAAGCTTCGGACTGAGTAT+AGG - tig0018755:84484-84503 Msa1369150:CDS 40.0%
TAAGCTTCGGACTGAGTATA+GGG - tig0018755:84485-84504 Msa1369150:CDS 40.0%
TGGTTACTGAGCAAAAGGAT+AGG - tig0018755:84538-84557 Msa1369150:CDS 40.0%
!! GCTTAATAGGGCTTTGAGAT+TGG - tig0018755:84578-84597 Msa1369150:intron 40.0%
TTGCTGAATGAGACCGTAAT+TGG + tig0018755:84640-84659 None:intergenic 40.0%
GTCTCATTCAGCAAGAACAA+GGG - tig0018755:84646-84665 Msa1369150:intron 40.0%
TCTCATTCAGCAAGAACAAG+GGG - tig0018755:84647-84666 Msa1369150:intron 40.0%
ATGGATACCTTGGAACAATC+TGG - tig0018755:84678-84697 Msa1369150:intron 40.0%
TACATTTGGAAGGAAGGGTA+AGG - tig0018755:84860-84879 Msa1369150:intron 40.0%
AGAGATCAAAGATCTTGCAG+AGG - tig0018755:84893-84912 Msa1369150:intron 40.0%
!! AAGAAGACCACTTTTCCGAA+AGG - tig0018755:84941-84960 Msa1369150:intron 40.0%
GAAACTACCTTTCGGAAAAG+TGG + tig0018755:84951-84970 None:intergenic 40.0%
GCAAGTGTGAAACTACCTTT+CGG + tig0018755:84959-84978 None:intergenic 40.0%
!! TTCTCACCTTAGGCTTTGTT+TGG - tig0018755:85204-85223 Msa1369150:intron 40.0%
!! TCTCACCTTAGGCTTTGTTT+GGG - tig0018755:85205-85224 Msa1369150:intron 40.0%
AAACTCCCAAACAAAGCCTA+AGG + tig0018755:85213-85232 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - tig0018755:85212-85231 Msa1369150:intron 40.0%
AAAAAGTTGTATTGGAGGGG+GGG + tig0018755:85413-85432 None:intergenic 40.0%
! TTTAGTTCCCCCAAATGAAG+AGG - tig0018755:85430-85449 Msa1369150:intron 40.0%
TTAGTTCCCCCAAATGAAGA+GGG - tig0018755:85431-85450 Msa1369150:intron 40.0%
GAAATAGAGTACATTGGGAG+GGG + tig0018755:85494-85513 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG + tig0018755:85528-85547 None:intergenic 40.0%
!!! AAGGGAGGGTTTTGGAAAAA+AGG + tig0018755:85532-85551 None:intergenic 40.0%
! TTTTTCCAAAACCCTCCCTT+TGG - tig0018755:85532-85551 Msa1369150:intron 40.0%
TATAATTGGGACCAAAGGGA+GGG + tig0018755:85546-85565 None:intergenic 40.0%
TTATAATTGGGACCAAAGGG+AGG + tig0018755:85547-85566 None:intergenic 40.0%
TGGTTGTTGTATATGGTTCC+AGG - tig0018755:85920-85939 Msa1369150:intron 40.0%
GGTTGTTGTATATGGTTCCA+GGG - tig0018755:85921-85940 Msa1369150:intron 40.0%
CCGAACTTGTAAAGTCACAA+AGG - tig0018755:85971-85990 Msa1369150:intron 40.0%
GTGGGAAAAACATAGATGGA+AGG + tig0018755:86013-86032 None:intergenic 40.0%
GCAAGTGGGAAAAACATAGA+TGG + tig0018755:86017-86036 None:intergenic 40.0%
TCAATTCTCATGATCTAGGG+AGG - tig0018755:86059-86078 Msa1369150:intron 40.0%
!! GGCAACTATAATGGTGTTGT+TGG - tig0018755:86116-86135 Msa1369150:intron 40.0%
!!! GTTGGTTTTGCAAAAGCCAA+AGG - tig0018755:86134-86153 Msa1369150:intron 40.0%
! CTATATTGGGCACTGTTCTT+TGG - tig0018755:86398-86417 Msa1369150:intron 40.0%
TCATAATTGGTGTGAGGATC+TGG - tig0018755:86477-86496 Msa1369150:intron 40.0%
TCTCAAATGAGTAAGGAACG+AGG - tig0018755:87263-87282 Msa1369150:CDS 40.0%
AAGACATACAGGATAAACGC+AGG + tig0018755:87297-87316 None:intergenic 40.0%
! TATGGTTTGGACTATTCTGC+CGG + tig0018755:87403-87422 None:intergenic 40.0%
!!! GGACCATCTTCAGCTTTTTT+TGG + tig0018755:87474-87493 None:intergenic 40.0%
! TGTCTTCAAAGCGCTTAATG+CGG - tig0018755:87584-87603 Msa1369150:CDS 40.0%
AACTTCTCTTGGACATCCTT+TGG + tig0018755:87709-87728 None:intergenic 40.0%
AAGGATGTCCAAGAGAAGTT+TGG - tig0018755:87709-87728 Msa1369150:intron 40.0%
AATACTTCTCGACCACAGTT+CGG + tig0018755:87735-87754 None:intergenic 40.0%
GGGTCCATTTAGGTAAATTC+AGG - tig0018755:87985-88004 Msa1369150:intron 40.0%
! ATTGTGTTCGGTTTGACAAG+CGG - tig0018755:88029-88048 Msa1369150:five_prime_UTR 40.0%
TAGTCTAGTTGGATTCACGC+TGG - tig0018755:83530-83549 Msa1369150:three_prime_UTR 45.0%
GAAGTTCTCACTGTTTACGG+CGG + tig0018755:83605-83624 None:intergenic 45.0%
CCATGAAAACGGGAACATGA+AGG + tig0018755:84054-84073 None:intergenic 45.0%
! CCTTCATGTTCCCGTTTTCA+TGG - tig0018755:84051-84070 Msa1369150:CDS 45.0%
GAGACTCTTGCCATGAAAAC+GGG + tig0018755:84064-84083 None:intergenic 45.0%
GATGGAACTTCTTAAGGAGG+TGG - tig0018755:84113-84132 Msa1369150:intron 45.0%
ACTTCTTAAGGAGGTGGAGA+AGG - tig0018755:84119-84138 Msa1369150:intron 45.0%
TTAAGGAGGTGGAGAAGGAT+AGG - tig0018755:84124-84143 Msa1369150:intron 45.0%
!! TGAGAGATTAAGGGCTGGTT+TGG - tig0018755:84161-84180 Msa1369150:intron 45.0%
ATCATAACCATCCTCGGTCT+CGG + tig0018755:84205-84224 None:intergenic 45.0%
!! TTCGTATCGATTCAACTCCG+AGG + tig0018755:84283-84302 None:intergenic 45.0%
! CAGTGATGATGAGGAAGATC+TGG - tig0018755:84320-84339 Msa1369150:intron 45.0%
CGGACTGAGTATAGGGTTAT+TGG - tig0018755:84492-84511 Msa1369150:CDS 45.0%
! TTTGAGATTGGTGCAGTGGA+AGG - tig0018755:84590-84609 Msa1369150:intron 45.0%
CCTGATAACCCTGCCAATTA+CGG - tig0018755:84624-84643 Msa1369150:intron 45.0%
GAATGAGACCGTAATTGGCA+GGG + tig0018755:84635-84654 None:intergenic 45.0%
TGAATGAGACCGTAATTGGC+AGG + tig0018755:84636-84655 None:intergenic 45.0%
GGTCTCATTCAGCAAGAACA+AGG - tig0018755:84645-84664 Msa1369150:intron 45.0%
CTCATTCAGCAAGAACAAGG+GGG - tig0018755:84648-84667 Msa1369150:intron 45.0%
TCATTCAGCAAGAACAAGGG+GGG - tig0018755:84649-84668 Msa1369150:intron 45.0%
AAGGAGGATAAACCTGCTCA+AGG - tig0018755:84708-84727 Msa1369150:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - tig0018755:85216-85235 Msa1369150:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - tig0018755:85217-85236 Msa1369150:intron 45.0%
TTTGGGGGTGGGAAAAATAG+AGG - tig0018755:85255-85274 Msa1369150:intron 45.0%
TTGGGGGTGGGAAAAATAGA+GGG - tig0018755:85256-85275 Msa1369150:intron 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG + tig0018755:85519-85538 None:intergenic 45.0%
!! TGAGAGCATCTGGAGCTTTA+GGG + tig0018755:86160-86179 None:intergenic 45.0%
!! TTGAGAGCATCTGGAGCTTT+AGG + tig0018755:86161-86180 None:intergenic 45.0%
AGCTCCAGATGCTCTCAATA+AGG - tig0018755:86163-86182 Msa1369150:intron 45.0%
!! GGTACCTTATTGAGAGCATC+TGG + tig0018755:86170-86189 None:intergenic 45.0%
ACCACCCACCATAAGAGATA+TGG - tig0018755:86295-86314 Msa1369150:intron 45.0%
! TCCATATCTCTTATGGTGGG+TGG + tig0018755:86299-86318 None:intergenic 45.0%
TGCAATTCCAGTGAGAGAAC+AGG + tig0018755:86520-86539 None:intergenic 45.0%
TGCGTGCAATGCATAAGACA+TGG + tig0018755:86588-86607 None:intergenic 45.0%
GGGCAATTACTGGTAGAAGA+AGG + tig0018755:87179-87198 None:intergenic 45.0%
GTTCCAGATTGAAACGCCAA+AGG - tig0018755:87690-87709 Msa1369150:exon 45.0%
CATCCTTTGGCGTTTCAATC+TGG + tig0018755:87696-87715 None:intergenic 45.0%
! GGAAGCATGCATCTCAGCAA+TGG + tig0018755:83785-83804 None:intergenic 50.0%
GTAGTGGCTGCATACCCTAA+AGG + tig0018755:84027-84046 None:intergenic 50.0%
GGAGAAGCTTAAGGAGACCT+CGG - tig0018755:84263-84282 Msa1369150:intron 50.0%
ATCGTCAAGCGTATCCGCTT+CGG + tig0018755:84418-84437 None:intergenic 50.0%
CCGTAATTGGCAGGGTTATC+AGG + tig0018755:84627-84646 None:intergenic 50.0%
GCATCTTCATCTCCTTGAGC+AGG + tig0018755:84723-84742 None:intergenic 50.0%
! AAGGAAGGGTAAGGCTCTAG+AGG - tig0018755:84869-84888 Msa1369150:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - tig0018755:85215-85234 Msa1369150:intron 50.0%
TAGAGTACATTGGGAGGGGA+GGG + tig0018755:85490-85509 None:intergenic 50.0%
ATAGAGTACATTGGGAGGGG+AGG + tig0018755:85491-85510 None:intergenic 50.0%
!! ATCTGGAGCTTTAGGGCCTT+TGG + tig0018755:86153-86172 None:intergenic 50.0%
TGTGACACCTGTTCTCTCAC+TGG - tig0018755:86510-86529 Msa1369150:intron 50.0%
GCATTATGTAGAGCGACACG+AGG - tig0018755:87090-87109 Msa1369150:CDS 50.0%
TTCCACTGCAACTGGCATGA+AGG - tig0018755:87377-87396 Msa1369150:CDS 50.0%
CAGTTCGGCCAAACTTCTCT+TGG + tig0018755:87720-87739 None:intergenic 50.0%
AGAGAAGTTTGGCCGAACTG+TGG - tig0018755:87720-87739 Msa1369150:intron 50.0%
CTAGTTGGATTCACGCTGGC+CGG - tig0018755:83534-83553 Msa1369150:three_prime_UTR 55.0%
TAGTTGGATTCACGCTGGCC+GGG - tig0018755:83535-83554 Msa1369150:three_prime_UTR 55.0%
CTCGGTCTCGGCATCAATGT+CGG + tig0018755:84193-84212 None:intergenic 55.0%
ATTGATGCCGAGACCGAGGA+TGG - tig0018755:84195-84214 Msa1369150:CDS 55.0%
!! GGGCTTTGAGATTGGTGCAG+TGG - tig0018755:84586-84605 Msa1369150:intron 55.0%
AGAACAAGGGGGGCCCAATA+TGG - tig0018755:84659-84678 Msa1369150:intron 55.0%
GGGGCCCAATATGGATACCT+TGG - tig0018755:84668-84687 Msa1369150:intron 55.0%
TGCTGCTGACAACGACGATG+AGG - tig0018755:84740-84759 Msa1369150:intron 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - tig0018755:85220-85239 Msa1369150:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - tig0018755:85221-85240 Msa1369150:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - tig0018755:85222-85241 Msa1369150:intron 55.0%
GTATTGGAGGGGGGGTTGAA+GGG + tig0018755:85405-85424 None:intergenic 55.0%
TGTATTGGAGGGGGGGTTGA+AGG + tig0018755:85406-85425 None:intergenic 55.0%
! TGGGACCAAAGGGAGGGTTT+TGG + tig0018755:85540-85559 None:intergenic 55.0%
! TTGGTGTGAGGATCTGGAGC+TGG - tig0018755:86483-86502 Msa1369150:intron 55.0%
ATGCCAGTTGCAGTGGAAGC+AGG + tig0018755:87375-87394 None:intergenic 55.0%
ACTGCAACTGGCATGAAGGC+CGG - tig0018755:87381-87400 Msa1369150:CDS 55.0%
CCGGCTAGGTTCTCGTTTCC+CGG + tig0018755:83556-83575 None:intergenic 60.0%
CCGGGAAACGAGAACCTAGC+CGG - tig0018755:83553-83572 Msa1369150:three_prime_UTR 60.0%
CGACATTGATGCCGAGACCG+AGG - tig0018755:84191-84210 Msa1369150:CDS 60.0%
TTTGGAGGGGAGGGGAAGGA+AGG - tig0018755:85230-85249 Msa1369150:intron 60.0%
TTGGAGGGGAGGGGAAGGAA+GGG - tig0018755:85231-85250 Msa1369150:intron 60.0%
GGAGGGGAAGGAAGGGCTTT+GGG - tig0018755:85238-85257 Msa1369150:intron 60.0%
GAGGGGAAGGAAGGGCTTTG+GGG - tig0018755:85239-85258 Msa1369150:intron 60.0%
! AGGGGAAGGAAGGGCTTTGG+GGG - tig0018755:85240-85259 Msa1369150:intron 60.0%
!! GAAGGAAGGGCTTTGGGGGT+GGG - tig0018755:85244-85263 Msa1369150:intron 60.0%
ATTGGGAGGGGAGGGCTTTG+GGG + tig0018755:85482-85501 None:intergenic 60.0%
CATTGGGAGGGGAGGGCTTT+GGG + tig0018755:85483-85502 None:intergenic 60.0%
ACATTGGGAGGGGAGGGCTT+TGG + tig0018755:85484-85503 None:intergenic 60.0%
TGGCCTGCTTCCACTGCAAC+TGG - tig0018755:87369-87388 Msa1369150:CDS 60.0%
GGCCTTCATGCCAGTTGCAG+TGG + tig0018755:87382-87401 None:intergenic 60.0%
GGAGTTTGGAGGGGAGGGGA+AGG - tig0018755:85226-85245 Msa1369150:intron 65.0%
GGGAGGGGAAGGAAGGGCTT+TGG - tig0018755:85237-85256 Msa1369150:intron 65.0%
!! GGAAGGAAGGGCTTTGGGGG+TGG - tig0018755:85243-85262 Msa1369150:intron 65.0%
! TTGGGAGGGGAGGGCTTTGG+GGG + tig0018755:85481-85500 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0018755 gene 83498 88127 83498 ID=Msa1369150;Name=Msa1369150
tig0018755 mRNA 83498 88127 83498 ID=Msa1369150-mRNA-1;Parent=Msa1369150;Name=Msa1369150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142|1|1|1|0.85|0.75|8|365|502
tig0018755 exon 83498 83928 83498 ID=Msa1369150-mRNA-1:exon:930;Parent=Msa1369150-mRNA-1
tig0018755 exon 84020 84079 84020 ID=Msa1369150-mRNA-1:exon:929;Parent=Msa1369150-mRNA-1
tig0018755 exon 84167 84265 84167 ID=Msa1369150-mRNA-1:exon:928;Parent=Msa1369150-mRNA-1
tig0018755 exon 84466 84561 84466 ID=Msa1369150-mRNA-1:exon:927;Parent=Msa1369150-mRNA-1
tig0018755 exon 85441 85548 85441 ID=Msa1369150-mRNA-1:exon:926;Parent=Msa1369150-mRNA-1
tig0018755 exon 85633 85683 85633 ID=Msa1369150-mRNA-1:exon:925;Parent=Msa1369150-mRNA-1
tig0018755 exon 86663 87717 86663 ID=Msa1369150-mRNA-1:exon:924;Parent=Msa1369150-mRNA-1
tig0018755 exon 88012 88127 88012 ID=Msa1369150-mRNA-1:exon:923;Parent=Msa1369150-mRNA-1
tig0018755 five_prime_UTR 88012 88127 88012 ID=Msa1369150-mRNA-1:five_prime_utr;Parent=Msa1369150-mRNA-1
tig0018755 five_prime_UTR 87692 87717 87692 ID=Msa1369150-mRNA-1:five_prime_utr;Parent=Msa1369150-mRNA-1
tig0018755 CDS 86663 87691 86663 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 CDS 85633 85683 85633 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 CDS 85441 85548 85441 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 CDS 84466 84561 84466 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 CDS 84167 84265 84167 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 CDS 84020 84079 84020 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 CDS 83863 83928 83863 ID=Msa1369150-mRNA-1:cds;Parent=Msa1369150-mRNA-1
tig0018755 three_prime_UTR 83498 83862 83498 ID=Msa1369150-mRNA-1:three_prime_utr;Parent=Msa1369150-mRNA-1
Gene Sequence

>Msa1369150

ATGGGTTATATTCAGTATGGTAGACACGGTTTTCGGAAGATATTAAGATCTGCAATTGCAACCAATGTGTTTCGGAACTCCATAAGATCACCTTTAGGGTATGCAGCCACTACATTACCTTCATGTTCCCGTTTTCATGGCAAGAGTCTCTATTCTACTACTTCTGATGCCAGAATAGTGATGGAACTTCTTAAGGAGGTGGAGAAGGATAGGTTGAGAGAGAAGAATGAGAGATTAAGGGCTGGTTTGGACACTGCCGACATTGATGCCGAGACCGAGGATGGTTATGATTACATGGGTGTAAGTTCTCTTATCGAGAAGCTTGAAAAGGAGAAGCTTAAGGAGACCTCGGAGTTGAATCGATACGAAGAGCCGACTGATTCTGACAGTGATGATGAGGAAGATCTGGATGCTAATCAGAAGAAGGTTGATGATTTCGAAAGGAAGTTCAGGAGGCATGAAGAAATGATTCAGAATTTCACCGAAGCGGATACGCTTGACGATGCTTATAAATGGATGCAAAAAATTGATAAGTTTGAGGACAAGCATTTTAAGCTTCGGACTGAGTATAGGGTTATTGGTGAACTCATGAATCGTCTTAAAGTGGTTACTGAGCAAAAGGATAGGTTTATTCTGCAGCATAAGCTTAATAGGGCTTTGAGATTGGTGCAGTGGAAGGAAGCTTATGATCCTGATAACCCTGCCAATTACGGTCTCATTCAGCAAGAACAAGGGGGGCCCAATATGGATACCTTGGAACAATCTGGATTTGAAAAGGAGGATAAACCTGCTCAAGGAGATGAAGATGCTGCTGACAACGACGATGAGGAAGAGTTCGATGACATGAAAGAAAAAGACAACATATTATTGGCCAAACTTGATGTTATTGACAAGAGACTTGAGGAGAAGCTAGCTGAACTTGAGTATACATTTGGAAGGAAGGGTAAGGCTCTAGAGGAAGAGATCAAAGATCTTGCAGAGGAGAGAAATGAGTTAACTGAGAAGAAAAGAAGACCACTTTTCCGAAAGGGTTTTGATGTAAAATTGATAGATGTGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAATTTTTAAGTATACTGCTATGTTAGCATGTGGCAACTATAATGGTGTTGTTGGTTTTGCAAAAGCCAAAGGCCCTAAAGCTCCAGATGCTCTCAATAAGGCATATGAGAAGTGCTTTCAGAATTTGCATTATGTAGAGCGACACGAGGAGCACACAATTGCGCATGCAATACAAACATCTTATAAAAAGACCAAGGTGTATCTCTGGCCTGCTTCCACTGCAACTGGCATGAAGGCCGGCAGAATAGTCCAAACCATACTACATTTAGCTGGTTTTAAGAATGTCAAGTCAAAGGTTGTTGGTAGCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCGCTTAATGCGATTGAAACGCCAAAGGATGTCCAAGAGAAGTTTGGCCGAACTGTGGTCGAGAAGTATTTGTTGTGA

Protein sequence

>Msa1369150

MGYIQYGRHGFRKILRSAIATNVFRNSIRSPLGYAATTLPSCSRFHGKSLYSTTSDARIVMELLKEVEKDRLREKNERLRAGLDTADIDAETEDGYDYMGVSSLIEKLEKEKLKETSELNRYEEPTDSDSDDEEDLDANQKKVDDFERKFRRHEEMIQNFTEADTLDDAYKWMQKIDKFEDKHFKLRTEYRVIGELMNRLKVVTEQKDRFILQHKLNRALRLVQWKEAYDPDNPANYGLIQQEQGGPNMDTLEQSGFEKEDKPAQGDEDAADNDDEEEFDDMKEKDNILLAKLDVIDKRLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEKKRRPLFRKGFDVKLIDVNRTCKVTKGGQIFKYTAMLACGNYNGVVGFAKAKGPKAPDALNKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPASTATGMKAGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPKDVQEKFGRTVVEKYLL*