AlfalfaGEDB | Msa0357990

M. sativa cultivar zhongmu-4 / Msa0357990

KEGG: K10268
GO: GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357990	XP_013460926.1	98.734	316	4	0	1	316	1	316	0.0	645

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357990	sp\|Q9ZPE4\|FBW2_ARATH	56.173	324	127	8	1	316	1	317	1.71e-115	339

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357990	A0A072V9V7	98.734	316	4	0	1	316	1	316	0.0	645

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0357990	0.800831	1.198610e-48	-8.615850e-47
Msa0003700	Msa0357990	0.831081	2.043000e-55	-8.615850e-47
Msa0003720	Msa0357990	0.806647	7.433166e-50	-8.615850e-47
Msa0016670	Msa0357990	0.807166	5.771467e-50	-8.615850e-47
Msa0017510	Msa0357990	0.801835	7.465574e-49	-8.615850e-47
Msa0027230	Msa0357990	0.805321	1.412354e-49	-8.615850e-47
Msa0027260	Msa0357990	0.815359	9.628124e-52	-8.615850e-47
Msa0027820	Msa0357990	0.810914	9.094686e-51	-8.615850e-47
Msa0032090	Msa0357990	0.816834	4.507911e-52	-8.615850e-47
Msa0032430	Msa0357990	0.809271	2.054819e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357990	MtrunA17_Chr3g0116021	98.734	316	4	0	1	316	1	316	0.0	645
Msa0357990	MtrunA17_Chr5g0426491	57.413	317	133	2	1	316	1	316	6.47e-120	347
Msa0357990	MtrunA17_Chr5g0448101	63.736	182	65	1	71	252	1	181	4.35e-77	233
Msa0357990	MtrunA17_Chr1g0168481	34.914	232	139	6	9	231	22	250	2.14e-30	116
Msa0357990	MtrunA17_Chr1g0168491	33.480	227	141	5	9	227	22	246	6.82e-26	104
Msa0357990	MtrunA17_Chr8g0382941	30.000	230	148	4	9	229	22	247	1.18e-24	101
Msa0357990	MtrunA17_Chr3g0111381	30.702	228	140	5	9	228	21	238	9.41e-24	98.6
Msa0357990	MtrunA17_Chr2g0285661	29.386	228	156	5	3	228	19	243	2.29e-22	95.5
Msa0357990	MtrunA17_Chr2g0285671	31.513	238	146	7	3	228	18	250	5.53e-22	94.4
Msa0357990	MtrunA17_Chr2g0285631	30.631	222	140	7	8	224	27	239	8.28e-22	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357990	AT4G08980.5	56.173	324	127	8	1	316	1	317	1.74e-116	339
Msa0357990	AT4G08980.4	56.173	324	127	8	1	316	1	317	1.74e-116	339
Msa0357990	AT4G08980.1	56.173	324	127	8	1	316	1	317	1.74e-116	339
Msa0357990	AT4G08980.2	56.173	324	127	8	1	316	1	317	1.74e-116	339
Msa0357990	AT4G08980.3	56.173	324	127	8	1	316	1	317	1.74e-116	339
Msa0357990	AT4G05460.1	32.180	289	179	8	3	289	12	285	7.27e-33	123
Msa0357990	AT5G57900.1	30.620	258	151	6	10	242	8	262	3.60e-24	100
Msa0357990	AT4G05497.1	31.304	230	147	4	5	228	16	240	1.89e-22	94.4
Msa0357990	AT4G05470.1	30.645	248	140	10	6	231	42	279	3.71e-22	94.7
Msa0357990	AT4G30640.1	29.675	246	147	6	10	230	20	264	3.65e-19	86.3

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Find 82 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCGGCACATGCAACG+GGG	0.735285	3_1:+42675655	None:intergenic
AAATCGCTCATATTGCTCCT+TGG	0.539756	3_1:+42674366	None:intergenic
AACTGCTAGAAGAGTTGTGT+AGG	0.601293	3_1:-42674236	Msa0357990:CDS
AAGAGAGTGTTTGTTCGAGG+AGG	0.614233	3_1:+42675609	None:intergenic
AAGAGATAGATATTGAAGAA+TGG	0.583086	3_1:-42675057	Msa0357990:CDS
AAGATCACCCCTAATGCATC+AGG	0.454304	3_1:+42675169	None:intergenic
AAGCAGGTGAATTACGAAGT+TGG	0.504117	3_1:-42675204	Msa0357990:CDS
AAGGAGCAATATGAGCGATT+TGG	0.420691	3_1:-42674364	Msa0357990:CDS
AAGTGAAGTTAGTACGTGTG+AGG	0.625306	3_1:+42675839	None:intergenic
AATTGATTCCTGATGCATTA+GGG	0.374472	3_1:-42675177	Msa0357990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTTATCAGTAAAAGTTG+TGG	-	chr3_1:42674458-42674477	Msa0357990:intron	30.0%
TTCAGCAATGAAAGTGAAAA+TGG	+	chr3_1:42674525-42674544	None:intergenic	30.0%
AATGCTGATGGTTCATATTA+AGG	-	chr3_1:42674690-42674709	Msa0357990:intron	30.0%
ACATGTATCTAGTCCAATAA+TGG	-	chr3_1:42674773-42674792	Msa0357990:intron	30.0%
GTGAGCTATTGTATCAAAAT+TGG	-	chr3_1:42675156-42675175	Msa0357990:CDS	30.0%
ATCTTGAAATGGCTTATCAT+AGG	-	chr3_1:42675322-42675341	Msa0357990:intron	30.0%
AGATCCAAAAATTCAAGCTT+TGG	+	chr3_1:42675387-42675406	None:intergenic	30.0%
ATAGATGATGAGCTTGAATT+TGG	-	chr3_1:42675624-42675643	Msa0357990:five_prime_UTR	30.0%
ATGCTTATCAGTAAAAGTTG+TGG	-	chr3_1:42674458-42674477	Msa0357990:intron	30.0%
TTCAGCAATGAAAGTGAAAA+TGG	+	chr3_1:42674525-42674544	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	42673586	42675886	42673586	ID=Msa0357990;Name=Msa0357990
chr3_1	mRNA	42673586	42675886	42673586	ID=Msa0357990-mRNA-1;Parent=Msa0357990;Name=Msa0357990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=288\|1\|1\|1\|0.5\|0.66\|3\|188\|316
chr3_1	exon	42673586	42674416	42673586	ID=Msa0357990-mRNA-1:exon:7353;Parent=Msa0357990-mRNA-1
chr3_1	exon	42674926	42675243	42674926	ID=Msa0357990-mRNA-1:exon:7352;Parent=Msa0357990-mRNA-1
chr3_1	exon	42675609	42675886	42675609	ID=Msa0357990-mRNA-1:exon:7351;Parent=Msa0357990-mRNA-1
chr3_1	five_prime_UTR	42675609	42675886	42675609	ID=Msa0357990-mRNA-1:five_prime_utr;Parent=Msa0357990-mRNA-1
chr3_1	five_prime_UTR	42675234	42675243	42675234	ID=Msa0357990-mRNA-1:five_prime_utr;Parent=Msa0357990-mRNA-1
chr3_1	CDS	42674926	42675233	42674926	ID=Msa0357990-mRNA-1:cds;Parent=Msa0357990-mRNA-1
chr3_1	CDS	42673774	42674416	42673774	ID=Msa0357990-mRNA-1:cds;Parent=Msa0357990-mRNA-1
chr3_1	three_prime_UTR	42673586	42673773	42673586	ID=Msa0357990-mRNA-1:three_prime_utr;Parent=Msa0357990-mRNA-1

Gene Sequence

>Msa0357990

ATGGGAGAAGCAGGTGAATTACGAAGTTGGGATGAATTGATTCCTGATGCATTAGGGGTGATCTTTACAAATCTTTCTCTGAAAGAGAGAGTGACAGTGATTCCAAGGGTATGTAAATCATGGTGTAAAGCAGTTTCTGGACCTAATTGTTGGCAAGAGATAGATATTGAAGAATGGAGCAACTATTGCCAACCTGACAAACTTGATCAGATGCTTCATATGCTTATCAGTAAAAGTTGTGGATCTCTCAGAAAGCTGTGTGTTTCTGGTCTTCAAACTGAGACCATTTTCACTTTCATTGCTGAAAATGCTAGTTCCCTTCGGAGTTTGAGACTACCAAGGAGCAATATGAGCGATTTGGTTGTGGAACAGATTGCTGGAAAATTTTCTATGATAACTTTCTTGGATGTGAGCTATTGTATCAAAATTGGTGCGTGTGCAATTGAGATGATAGGCAAGAACTGCAAACTGCTAGAAGAGTTGTGTAGGAATATGCATCCATTGGATACAGCCGGCAAGCCATTACAAGATGACGAGGCATATGCAATTGCAACCACAATGCCGAAGCTCAAGCATCTTGAAATGGCTTATCATAGGATCAGCACTTCGGGGGTTGTTCAAATACTTTCGAACTGTCCAAAGCTTGAATTTTTGGATCTGAGGGGTTGTTGGGGGGTCAACCTAGACGACAACAAGTCCGCGAAGCAGAGTTTTCCAAAACTTAAAGTTTTGGGGCCTTTTGTTCTTGGTGCTTATGAGAGTGATGGTTGGGAAGATGATGACTACTCAGATGTATCAGATGAGTATCTAGCTTGGGATTTTGTAGCTGGTAATGAATACTATGTTGATGATGATAGTGATGGTTATGAAGGAAGGATAGATGATGAGCTTGAATTTGGATTATATGAAGGTATAGAAGATGCAGGAATGTATTGGCCTCCATCACCATAA

Protein sequence

>Msa0357990

MGEAGELRSWDELIPDALGVIFTNLSLKERVTVIPRVCKSWCKAVSGPNCWQEIDIEEWSNYCQPDKLDQMLHMLISKSCGSLRKLCVSGLQTETIFTFIAENASSLRSLRLPRSNMSDLVVEQIAGKFSMITFLDVSYCIKIGACAIEMIGKNCKLLEELCRNMHPLDTAGKPLQDDEAYAIATTMPKLKHLEMAYHRISTSGVVQILSNCPKLEFLDLRGCWGVNLDDNKSAKQSFPKLKVLGPFVLGAYESDGWEDDDYSDVSDEYLAWDFVAGNEYYVDDDSDGYEGRIDDELEFGLYEGIEDAGMYWPPSP*