AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1060540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060540 MtrunA17_Chr7g0238241 74.316 475 101 5 1 462 1 467 0.0 660
Msa1060540 MtrunA17_Chr7g0238231 68.763 493 124 4 1 464 1 492 0.0 644
Msa1060540 MtrunA17_Chr7g0238511 69.231 468 110 5 1 464 1 438 0.0 637
Msa1060540 MtrunA17_Chr7g0238101 63.190 489 143 7 1 462 1 479 0.0 590
Msa1060540 MtrunA17_Chr7g0238111 65.032 469 123 7 1 464 1 433 0.0 576
Msa1060540 MtrunA17_Chr7g0238141 63.983 472 139 5 1 464 1 449 0.0 549
Msa1060540 MtrunA17_Chr7g0238191 63.362 464 147 6 1 464 1 441 0.0 544
Msa1060540 MtrunA17_Chr7g0238171 54.766 535 157 6 1 464 1 521 0.0 534
Msa1060540 MtrunA17_Chr7g0238131 62.768 419 150 4 50 464 1 417 4.31e-179 507
Msa1060540 MtrunA17_Chr7g0238251 55.556 513 158 9 1 464 1 492 1.96e-166 478
Msa1060540 MtrunA17_Chr7g0238181 61.461 397 109 4 71 464 1 356 2.34e-158 452
Msa1060540 MtrunA17_Chr7g0238151 67.050 261 80 2 2 262 1 255 7.78e-111 328
Msa1060540 MtrunA17_Chr7g0238291 62.030 266 90 5 1 264 1 257 4.42e-101 303
Msa1060540 MtrunA17_Chr7g0238051 61.364 264 59 3 244 464 104 367 1.55e-99 303
Msa1060540 MtrunA17_Chr7g0238071 78.610 187 37 1 1 187 1 184 2.08e-98 294
Msa1060540 MtrunA17_Chr7g0238091 72.021 193 54 0 272 464 29 221 1.46e-97 292
Msa1060540 MtrunA17_Chr7g0238201 80.663 181 35 0 1 181 1 181 2.59e-95 285
Msa1060540 MtrunA17_Chr7g0238031 72.727 198 53 1 2 198 1 198 4.99e-95 297
Msa1060540 MtrunA17_Chr8g0352511 37.045 494 223 13 16 461 19 472 1.84e-92 288
Msa1060540 MtrunA17_Chr7g0232531 60.148 271 88 6 1 262 1 260 1.42e-91 278
Msa1060540 MtrunA17_Chr8g0354591 37.093 461 240 10 26 461 24 459 1.08e-90 283
Msa1060540 MtrunA17_Chr7g0238211 77.297 185 42 0 280 464 1 185 1.72e-89 270
Msa1060540 MtrunA17_Chr7g0238081 69.730 185 48 1 280 464 1 177 4.92e-88 266
Msa1060540 MtrunA17_Chr7g0232521 71.958 189 49 1 271 455 25 213 1.12e-82 254
Msa1060540 MtrunA17_Chr8g0354581 35.331 484 230 12 24 462 22 467 7.01e-80 255
Msa1060540 MtrunA17_Chr7g0238281 67.033 182 59 1 282 463 4 184 2.88e-75 234
Msa1060540 MtrunA17_Chr7g0238021 61.616 198 72 2 71 264 1 198 7.68e-74 231
Msa1060540 MtrunA17_Chr1g0170061 50.000 212 69 8 1 200 1 187 3.28e-49 169
Msa1060540 MtrunA17_Chr8g0352491 44.865 185 87 2 292 461 2 186 7.78e-47 160
Msa1060540 MtrunA17_Chr5g0439641 30.323 465 252 14 22 459 28 447 2.29e-46 166
Msa1060540 MtrunA17_Chr8g0354621 52.113 142 55 1 333 461 12 153 4.01e-41 144
Msa1060540 MtrunA17_Chr5g0401791 28.931 477 287 14 6 460 81 527 3.94e-40 151
Msa1060540 MtrunA17_Chr5g0439721 29.698 431 240 11 45 459 49 432 1.92e-39 148
Msa1060540 MtrunA17_Chr8g0354611 40.854 164 80 4 26 181 24 178 5.82e-32 122
Msa1060540 MtrunA17_Chr5g0439681 38.983 177 103 2 284 459 136 308 1.12e-30 120
Msa1060540 MtrunA17_Chr8g0352501 42.958 142 64 4 49 182 7 139 1.29e-27 110
Msa1060540 MtrunA17_Chr8g0335061 24.043 470 279 13 14 451 9 432 5.12e-26 110
Msa1060540 MtrunA17_Chr8g0335011 25.902 471 280 12 28 451 38 486 7.88e-26 110
Msa1060540 MtrunA17_Chr8g0334971 26.773 437 249 13 42 451 41 433 1.12e-25 108
Msa1060540 MtrunA17_Chr5g0440401 33.636 220 135 6 246 460 2 215 1.78e-25 103
Msa1060540 MtrunA17_Chr2g0297831 25.828 453 280 15 13 455 54 460 2.81e-25 108
Msa1060540 MtrunA17_Chr2g0300311 26.141 482 265 19 3 455 25 444 2.30e-24 105
Msa1060540 MtrunA17_Chr8g0334951 26.906 446 255 15 28 453 31 425 2.38e-23 102
Msa1060540 MtrunA17_Chr6g0452591 25.607 453 269 18 17 459 46 440 2.83e-23 102
Msa1060540 MtrunA17_Chr6g0452551 24.891 458 286 14 2 455 1 404 1.01e-22 100
Msa1060540 MtrunA17_Chr6g0452611 25.959 443 263 15 21 455 19 404 2.60e-22 98.6
Msa1060540 MtrunA17_Chr8g0334911 25.957 470 247 13 14 442 10 419 4.94e-22 98.2
Msa1060540 MtrunA17_Chr3g0118601 25.328 458 290 16 16 459 30 449 1.66e-21 96.7
Msa1060540 MtrunA17_Chr6g0452501 24.307 469 285 15 2 459 1 410 3.01e-21 95.5
Msa1060540 MtrunA17_Chr8g0354871 30.667 225 138 6 246 459 164 381 1.09e-20 93.6
Msa1060540 MtrunA17_Chr8g0335071 23.457 486 299 17 7 461 18 461 5.19e-20 92.4
Msa1060540 MtrunA17_Chr6g0452531 23.438 448 281 14 19 459 18 410 1.39e-19 90.9
Msa1060540 MtrunA17_Chr2g0297821 29.670 182 121 5 285 461 4 183 7.85e-19 84.3
Msa1060540 MtrunA17_Chr8g0335021 23.894 452 291 15 28 455 29 451 9.34e-19 88.6
Msa1060540 MtrunA17_Chr6g0457371 24.396 455 267 15 17 459 16 405 2.07e-18 87.0
Msa1060540 MtrunA17_Chr7g0265891 22.197 437 266 11 45 460 68 451 1.14e-16 82.0
Msa1060540 MtrunA17_Chr6g0452161 23.690 439 283 12 28 459 27 420 2.10e-16 81.3
Msa1060540 MtrunA17_Chr2g0296801 24.834 302 174 10 160 455 90 344 4.38e-15 76.6
Msa1060540 MtrunA17_Chr6g0452601 22.616 451 295 13 16 459 15 418 6.91e-15 76.6
Msa1060540 MtrunA17_Chr4g0002901 27.717 184 122 4 285 464 379 555 6.07e-13 70.9
Msa1060540 MtrunA17_Chr4g0002911 26.368 201 140 5 266 464 359 553 6.51e-13 70.9
Msa1060540 MtrunA17_Chr7g0220521 28.125 160 110 3 308 463 386 544 2.26e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1060540 AT3G50120.1 29.668 482 280 16 6 464 83 528 9.69e-41 153
Msa1060540 AT3G50140.1 28.512 484 279 14 7 464 94 536 3.73e-38 146
Msa1060540 AT3G50180.1 28.211 475 270 16 6 460 158 581 1.63e-36 142
Msa1060540 AT3G50150.1 26.667 450 282 14 28 464 92 506 2.29e-36 140
Msa1060540 AT3G50160.1 29.120 443 248 15 28 459 106 493 3.42e-36 140
Msa1060540 AT3G50130.1 29.114 474 284 17 6 461 119 558 5.74e-36 140
Msa1060540 AT3G50170.1 27.254 477 288 15 6 460 93 532 7.13e-36 139
Msa1060540 AT4G31980.1 27.477 444 249 14 28 459 295 677 2.96e-31 127
Msa1060540 AT5G11290.2 26.267 434 255 14 36 459 41 419 1.57e-30 122
Msa1060540 AT3G50190.1 26.569 478 259 13 7 460 77 486 1.70e-29 120
Msa1060540 AT3G44710.1 25.845 503 269 24 18 460 39 497 2.02e-26 112
Msa1060540 AT5G22540.1 25.747 435 239 16 28 437 33 408 3.10e-26 110
Msa1060540 AT2G36430.1 25.503 447 273 13 28 462 47 445 1.04e-23 103
Msa1060540 AT3G47250.3 24.661 442 261 16 45 460 78 473 1.09e-23 103
Msa1060540 AT3G47250.2 24.661 442 261 16 45 460 78 473 1.09e-23 103
Msa1060540 AT3G47250.1 24.661 442 261 16 45 460 78 473 1.09e-23 103
Msa1060540 AT3G47200.1 24.208 442 259 17 45 459 63 455 1.65e-23 103
Msa1060540 AT3G47200.2 24.208 442 259 17 45 459 63 455 1.65e-23 103
Msa1060540 AT5G22550.2 24.638 483 269 18 28 460 46 483 9.20e-22 98.2
Msa1060540 AT5G11290.1 24.752 404 239 14 66 459 2 350 8.81e-21 94.0
Msa1060540 AT2G28580.5 24.426 479 292 16 2 459 69 498 2.40e-20 94.0
Msa1060540 AT2G28580.4 24.426 479 292 16 2 459 83 512 2.86e-20 94.0
Msa1060540 AT2G44930.1 24.190 463 267 15 28 459 86 495 1.58e-19 91.7
Msa1060540 AT2G28580.2 23.838 495 292 18 2 459 83 529 3.27e-19 90.9
Msa1060540 AT2G28580.1 23.838 495 292 18 2 459 69 515 3.57e-19 90.5
Msa1060540 AT2G28580.6 23.838 495 292 18 2 459 1 447 3.68e-19 90.1
Msa1060540 AT1G67150.4 22.993 461 274 13 26 464 6 407 2.44e-17 84.3
Msa1060540 AT1G67150.1 22.993 461 274 13 26 464 6 407 2.44e-17 84.3
Msa1060540 AT1G67150.3 28.063 253 162 5 220 464 124 364 3.88e-17 83.2
Msa1060540 AT1G67150.2 23.736 455 282 13 26 464 6 411 3.95e-17 83.6
Msa1060540 AT3G60470.1 27.193 228 141 6 246 455 310 530 3.04e-16 81.6
Msa1060540 AT3G47210.1 22.849 372 232 10 45 410 110 432 2.07e-15 79.0

Find 93 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAACTTCTTACAAATTT+AGG 0.136339 7_2:+48936219 None:intergenic
GTATCTTTGGTCGTGAATTT+TGG 0.136721 7_2:+48938437 None:intergenic
ACATGTCTTATTAACTAATT+TGG 0.227007 7_2:+48936273 None:intergenic
TCAAAATATGTTTGTGTGTT+AGG 0.228169 7_2:+48936774 None:intergenic
ACAGTAATGCTCATCTATTT+TGG 0.232714 7_2:+48936743 None:intergenic
CTTAATAACTTCACATCTTC+AGG 0.251647 7_2:+48936879 None:intergenic
TGTGGCACCCTTTGTATCTT+TGG 0.274930 7_2:+48938424 None:intergenic
TACGAACTGAAGGGTCAATT+TGG 0.278692 7_2:-48938214 Msa1060540:CDS
TAAGACATGTATATATTATA+GGG 0.278863 7_2:-48936260 Msa1060540:three_prime_UTR
ATAAGACATGTATATATTAT+AGG 0.303042 7_2:-48936261 Msa1060540:three_prime_UTR
GACACATTTCATATGCTATC+AGG 0.324075 7_2:+48936967 None:intergenic
CGCAGCAATGAATGCAATAA+TGG 0.338635 7_2:+48936662 None:intergenic
TTTCATTCAGACATGGTTTA+CGG 0.345960 7_2:-48936619 Msa1060540:CDS
ATGCATATATTATATAATAT+TGG 0.352817 7_2:+48938590 None:intergenic
ATCTTTCTGTGTAGATCCTC+TGG 0.356092 7_2:+48938250 None:intergenic
CCATAGTCGTTCTCAAAATC+TGG 0.362451 7_2:+48936945 None:intergenic
TGCCACATTATCTCAGAAAT+AGG 0.363597 7_2:-48938408 Msa1060540:CDS
ATGCTCTTTGCTGCATATCT+TGG 0.372383 7_2:-48938104 Msa1060540:CDS
ACTGTAATAAATACAAGAAT+TGG 0.373930 7_2:-48936725 Msa1060540:CDS
CTCCTGCTCCACTCATTAAC+TGG 0.377272 7_2:+48937890 None:intergenic
GTGAAGTTATTAAGATCAAA+AGG 0.380443 7_2:-48936870 Msa1060540:CDS
TTCACCCGGCTAACAAATAA+AGG 0.392300 7_2:-48936596 Msa1060540:exon
ACTTTAATATTCATGTGCTT+TGG 0.392440 7_2:+48938061 None:intergenic
GGCAAGTCTCTTGAAGGCTT+TGG 0.398595 7_2:-48938169 Msa1060540:CDS
GTGCTTTGGTTGATCAAGCT+TGG 0.421598 7_2:+48938075 None:intergenic
ACACTTACTTCAGCAATCCT+TGG 0.424168 7_2:-48936686 Msa1060540:CDS
TTAACAGGCAAGTCTCTTGA+AGG 0.438518 7_2:-48938175 Msa1060540:CDS
CACTTACTTCAGCAATCCTT+GGG 0.439820 7_2:-48936685 Msa1060540:CDS
TCGGAGAAATCTATGTCTAA+TGG 0.445080 7_2:+48937062 None:intergenic
CAATATCATAAGTACTGACT+TGG 0.453322 7_2:-48936799 Msa1060540:CDS
TTATTATATTGAATCAATGA+TGG 0.463343 7_2:-48938515 Msa1060540:exon
GATTCAATATAATAATGAAC+AGG 0.463346 7_2:+48938523 None:intergenic
AAGCACCTTTATTTGTTAGC+CGG 0.479362 7_2:+48936591 None:intergenic
TCGTGGATGTTGTTCGTGGA+TGG 0.483877 7_2:-48938127 Msa1060540:CDS
AGCACCTTTATTTGTTAGCC+GGG 0.485274 7_2:+48936592 None:intergenic
GGCAATGAAAATCTGAGGTT+AGG 0.487553 7_2:-48938328 Msa1060540:CDS
TGCTTCTTCATGAACCTCAT+AGG 0.493401 7_2:+48937844 None:intergenic
GTGTTGTCCACAACGATCTC+AGG 0.494816 7_2:+48937011 None:intergenic
GAGAGAAGTACAAGCTTATG+TGG 0.495648 7_2:-48938306 Msa1060540:CDS
TCAACTTGTTCTAGTGATGA+TGG 0.504707 7_2:-48938035 Msa1060540:CDS
TGAAGTTATTAAGATCAAAA+GGG 0.507002 7_2:-48936869 Msa1060540:CDS
TTCCTATTTCTGAGATAATG+TGG 0.516261 7_2:+48938406 None:intergenic
CACCAGTTAATGAGTGGAGC+AGG 0.516962 7_2:-48937892 Msa1060540:CDS
ATACAAGAATTGGATAGCGC+AGG 0.517050 7_2:-48936715 Msa1060540:CDS
AGAAGATGAGTGGGTATCAC+TGG 0.523003 7_2:+48937779 None:intergenic
ATTCAGAGATGAAGACATAC+AGG 0.523302 7_2:-48937142 Msa1060540:CDS
TTTCATATGCTATCAGGTTG+AGG 0.526396 7_2:+48936973 None:intergenic
TTCTTACTTTCATTCAGACA+TGG 0.527343 7_2:-48936626 Msa1060540:CDS
CAGAAGATCAAGAAGATGAG+TGG 0.527820 7_2:+48937769 None:intergenic
AATAGCCTGAGTACTGCATA+AGG 0.531434 7_2:+48937986 None:intergenic
GACATGGTTTACGGTTCACC+CGG 0.533052 7_2:-48936610 Msa1060540:CDS
ATGAAGCTAGCTACAAGAAA+CGG 0.533468 7_2:-48937175 Msa1060540:CDS
GGACCTATTGATACCAACTT+GGG 0.537240 7_2:+48938361 None:intergenic
ATGCAGTACTCAGGCTATTG+TGG 0.538678 7_2:-48937982 Msa1060540:CDS
AGGACCTATTGATACCAACT+TGG 0.542624 7_2:+48938360 None:intergenic
TACAAGAATTGGATAGCGCA+GGG 0.544674 7_2:-48936714 Msa1060540:CDS
TAAATTAATATTCTCATCGA+TGG 0.548081 7_2:-48936388 Msa1060540:three_prime_UTR
ACATAGATTTCTCCGAAGGA+TGG 0.548405 7_2:-48937055 Msa1060540:CDS
TTCACGACCAAAGATACAAA+GGG 0.552352 7_2:-48938431 Msa1060540:CDS
CCTCAACACATCTAAATCAA+AGG 0.555794 7_2:-48937735 Msa1060540:intron
AATATAATAATGAACAGGAT+AGG 0.557470 7_2:+48938528 None:intergenic
TTAATGAGTGGAGCAGGAGA+TGG 0.558275 7_2:-48937886 Msa1060540:CDS
TCAATAGGTCCTATCCATCA+TGG 0.561530 7_2:-48938349 Msa1060540:CDS
ACTTATGATATTGAAAAGAT+CGG 0.563500 7_2:+48936809 None:intergenic
AACTTCCTTATGCAGTACTC+AGG 0.564721 7_2:-48937991 Msa1060540:CDS
TCTTTATCAATTCATTCTCG+TGG 0.570032 7_2:+48937951 None:intergenic
AGATAACATTTACGAACTGA+AGG 0.577652 7_2:-48938224 Msa1060540:CDS
AAGACATGTATATATTATAG+GGG 0.579550 7_2:-48936259 Msa1060540:three_prime_UTR
TAATTCTCCTTGGAGTGATG+AGG 0.588023 7_2:-48936838 Msa1060540:CDS
TTAGACATAGATTTCTCCGA+AGG 0.589518 7_2:-48937059 Msa1060540:CDS
ATTCACGACCAAAGATACAA+AGG 0.596083 7_2:-48938432 Msa1060540:CDS
CATGCAAAAGACTACCTATG+AGG 0.602379 7_2:-48937858 Msa1060540:CDS
CCTTTGATTTAGATGTGTTG+AGG 0.605876 7_2:+48937735 None:intergenic
TCATTAACTGGTGTGACCCA+AGG 0.608660 7_2:+48937902 None:intergenic
GACTCTTCCTGAGATCGTTG+TGG 0.611738 7_2:-48937018 Msa1060540:CDS
ACCTTGAAGAAAAGCTGTCG+TGG 0.614215 7_2:-48938144 Msa1060540:CDS
GCTGTCGTGGATGTTGTTCG+TGG 0.618355 7_2:-48938131 Msa1060540:CDS
GCAACTTCCTCATCACTCCA+AGG 0.628368 7_2:+48936831 None:intergenic
AGAAGATCAAGAAGATGAGT+GGG 0.631049 7_2:+48937770 None:intergenic
GGGTCACACCAGTTAATGAG+TGG 0.631841 7_2:-48937898 Msa1060540:CDS
ATAACTTCACATCTTCAGGA+TGG 0.632198 7_2:+48936883 None:intergenic
AGAGAAGTACAAGCTTATGT+GGG 0.632538 7_2:-48938305 Msa1060540:CDS
TCAAGTCAAGCGCGACACGA+AGG 0.633715 7_2:-48937085 Msa1060540:CDS
TCTGAATGAAAGTAAGAACA+AGG 0.635749 7_2:+48936631 None:intergenic
ATCATGGCAATGAAAATCTG+AGG 0.637897 7_2:-48938333 Msa1060540:CDS
ATGAATGCAATAATGGCCCA+AGG 0.643435 7_2:+48936669 None:intergenic
GTACAAAACCTAAAAGCAGT+CGG 0.657176 7_2:-48937116 Msa1060540:CDS
GACCTATTGATACCAACTTG+GGG 0.657548 7_2:+48938362 None:intergenic
GATAACATTTACGAACTGAA+GGG 0.663338 7_2:-48938223 Msa1060540:CDS
ACCTATTGATACCAACTTGG+GGG 0.674777 7_2:+48938363 None:intergenic
CTGAATGAAAGTAAGAACAA+GGG 0.695408 7_2:+48936632 None:intergenic
AAATACAAGATGCAATCCAG+AGG 0.706349 7_2:-48938266 Msa1060540:CDS
TATCAGGTTGAGGAAAGTAG+CGG 0.708857 7_2:+48936983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCATATATTATATAATAT+TGG + chr7_2:48936247-48936266 None:intergenic 10.0%
!!! AAATTTTTCTTTAATAGTTT+GGG + chr7_2:48936348-48936367 None:intergenic 10.0%
!! ATGCATATATTATATAATAT+TGG + chr7_2:48936247-48936266 None:intergenic 10.0%
!!! AAATTTTTCTTTAATAGTTT+GGG + chr7_2:48936348-48936367 None:intergenic 10.0%
!! TTATTATATTGAATCAATGA+TGG - chr7_2:48936319-48936338 Msa1060540:three_prime_UTR 15.0%
!!! CAAATTTTTCTTTAATAGTT+TGG + chr7_2:48936349-48936368 None:intergenic 15.0%
!! AACTATTAAAGAAAAATTTG+TGG - chr7_2:48936349-48936368 Msa1060540:three_prime_UTR 15.0%
!! AGAAAGGAAAAAATTAAAAT+TGG - chr7_2:48937214-48937233 Msa1060540:intron 15.0%
!! AGACTTAAAACTAATAAAAA+TGG + chr7_2:48937315-48937334 None:intergenic 15.0%
!! TTTGCTCTAATATATAATAA+TGG + chr7_2:48937343-48937362 None:intergenic 15.0%
!! ATAAGACATGTATATATTAT+AGG - chr7_2:48938573-48938592 Msa1060540:five_prime_UTR 15.0%
!! TAAGACATGTATATATTATA+GGG - chr7_2:48938574-48938593 Msa1060540:five_prime_UTR 15.0%
!! TTATTATATTGAATCAATGA+TGG - chr7_2:48936319-48936338 Msa1060540:three_prime_UTR 15.0%
!!! CAAATTTTTCTTTAATAGTT+TGG + chr7_2:48936349-48936368 None:intergenic 15.0%
!! AACTATTAAAGAAAAATTTG+TGG - chr7_2:48936349-48936368 Msa1060540:three_prime_UTR 15.0%
!! AGAAAGGAAAAAATTAAAAT+TGG - chr7_2:48937214-48937233 Msa1060540:intron 15.0%
!! AGACTTAAAACTAATAAAAA+TGG + chr7_2:48937315-48937334 None:intergenic 15.0%
!! TTTGCTCTAATATATAATAA+TGG + chr7_2:48937343-48937362 None:intergenic 15.0%
!! ATAAGACATGTATATATTAT+AGG - chr7_2:48938573-48938592 Msa1060540:five_prime_UTR 15.0%
!! TAAGACATGTATATATTATA+GGG - chr7_2:48938574-48938593 Msa1060540:five_prime_UTR 15.0%
!! AATATAATAATGAACAGGAT+AGG + chr7_2:48936309-48936328 None:intergenic 20.0%
!! GATTCAATATAATAATGAAC+AGG + chr7_2:48936314-48936333 None:intergenic 20.0%
!! AATAACAAGAAAATAGAGAA+AGG - chr7_2:48937198-48937217 Msa1060540:intron 20.0%
!! TAAATTTGTCACTAATTCTA+AGG - chr7_2:48937241-48937260 Msa1060540:intron 20.0%
!! TGAAGTTATTAAGATCAAAA+GGG - chr7_2:48937965-48937984 Msa1060540:CDS 20.0%
!! ACTTATGATATTGAAAAGAT+CGG + chr7_2:48938028-48938047 None:intergenic 20.0%
!! ACTGTAATAAATACAAGAAT+TGG - chr7_2:48938109-48938128 Msa1060540:CDS 20.0%
!! TAAATTAATATTCTCATCGA+TGG - chr7_2:48938446-48938465 Msa1060540:CDS 20.0%
!!! ACATGTCTTATTAACTAATT+TGG + chr7_2:48938564-48938583 None:intergenic 20.0%
!! AAGACATGTATATATTATAG+GGG - chr7_2:48938575-48938594 Msa1060540:five_prime_UTR 20.0%
!! AATATAATAATGAACAGGAT+AGG + chr7_2:48936309-48936328 None:intergenic 20.0%
!! GATTCAATATAATAATGAAC+AGG + chr7_2:48936314-48936333 None:intergenic 20.0%
!! AATAACAAGAAAATAGAGAA+AGG - chr7_2:48937198-48937217 Msa1060540:intron 20.0%
!! TAAATTTGTCACTAATTCTA+AGG - chr7_2:48937241-48937260 Msa1060540:intron 20.0%
!! TGAAGTTATTAAGATCAAAA+GGG - chr7_2:48937965-48937984 Msa1060540:CDS 20.0%
!! ACTTATGATATTGAAAAGAT+CGG + chr7_2:48938028-48938047 None:intergenic 20.0%
!! ACTGTAATAAATACAAGAAT+TGG - chr7_2:48938109-48938128 Msa1060540:CDS 20.0%
!! TAAATTAATATTCTCATCGA+TGG - chr7_2:48938446-48938465 Msa1060540:CDS 20.0%
!!! ACATGTCTTATTAACTAATT+TGG + chr7_2:48938564-48938583 None:intergenic 20.0%
!! AAGACATGTATATATTATAG+GGG - chr7_2:48938575-48938594 Msa1060540:five_prime_UTR 20.0%
! ACTTTAATATTCATGTGCTT+TGG + chr7_2:48936776-48936795 None:intergenic 25.0%
!! AAAATGGAGGAAATTTTTCA+TGG + chr7_2:48936909-48936928 None:intergenic 25.0%
! TCTAAGGACAAAATTAGTAA+TGG - chr7_2:48937257-48937276 Msa1060540:intron 25.0%
!!! TTTTTTTTTAAGACCAGAAG+GGG + chr7_2:48937409-48937428 None:intergenic 25.0%
!!! GTTTTTTTTTAAGACCAGAA+GGG + chr7_2:48937410-48937429 None:intergenic 25.0%
!!! TGTTTTTTTTTAAGACCAGA+AGG + chr7_2:48937411-48937430 None:intergenic 25.0%
! TATTAATTAACGACTTCCTA+TGG + chr7_2:48937473-48937492 None:intergenic 25.0%
!! TCTATGCTTTAAACATAAAG+GGG + chr7_2:48937630-48937649 None:intergenic 25.0%
!! GTCTATGCTTTAAACATAAA+GGG + chr7_2:48937631-48937650 None:intergenic 25.0%
!! AGTCTATGCTTTAAACATAA+AGG + chr7_2:48937632-48937651 None:intergenic 25.0%
! GTGAAGTTATTAAGATCAAA+AGG - chr7_2:48937964-48937983 Msa1060540:CDS 25.0%
! TCAAAATATGTTTGTGTGTT+AGG + chr7_2:48938063-48938082 None:intergenic 25.0%
!!! TGAAAATGTTGTTTTCGTTA+TGG - chr7_2:48938271-48938290 Msa1060540:CDS 25.0%
! TGACAACTTCTTACAAATTT+AGG + chr7_2:48938618-48938637 None:intergenic 25.0%
! ACTTTAATATTCATGTGCTT+TGG + chr7_2:48936776-48936795 None:intergenic 25.0%
!! AAAATGGAGGAAATTTTTCA+TGG + chr7_2:48936909-48936928 None:intergenic 25.0%
! TCTAAGGACAAAATTAGTAA+TGG - chr7_2:48937257-48937276 Msa1060540:intron 25.0%
!!! TTTTTTTTTAAGACCAGAAG+GGG + chr7_2:48937409-48937428 None:intergenic 25.0%
!!! GTTTTTTTTTAAGACCAGAA+GGG + chr7_2:48937410-48937429 None:intergenic 25.0%
!!! TGTTTTTTTTTAAGACCAGA+AGG + chr7_2:48937411-48937430 None:intergenic 25.0%
! TATTAATTAACGACTTCCTA+TGG + chr7_2:48937473-48937492 None:intergenic 25.0%
!! TCTATGCTTTAAACATAAAG+GGG + chr7_2:48937630-48937649 None:intergenic 25.0%
!! GTCTATGCTTTAAACATAAA+GGG + chr7_2:48937631-48937650 None:intergenic 25.0%
!! AGTCTATGCTTTAAACATAA+AGG + chr7_2:48937632-48937651 None:intergenic 25.0%
! GTGAAGTTATTAAGATCAAA+AGG - chr7_2:48937964-48937983 Msa1060540:CDS 25.0%
! TCAAAATATGTTTGTGTGTT+AGG + chr7_2:48938063-48938082 None:intergenic 25.0%
!!! TGAAAATGTTGTTTTCGTTA+TGG - chr7_2:48938271-48938290 Msa1060540:CDS 25.0%
! TGACAACTTCTTACAAATTT+AGG + chr7_2:48938618-48938637 None:intergenic 25.0%
! TATCTTTGGTCGTGAATTTT+GGG + chr7_2:48936399-48936418 None:intergenic 30.0%
!! TTCCTATTTCTGAGATAATG+TGG + chr7_2:48936431-48936450 None:intergenic 30.0%
AGATAACATTTACGAACTGA+AGG - chr7_2:48936610-48936629 Msa1060540:CDS 30.0%
GATAACATTTACGAACTGAA+GGG - chr7_2:48936611-48936630 Msa1060540:CDS 30.0%
!!! GACGATGTTTTAACTTTAAC+AGG - chr7_2:48936644-48936663 Msa1060540:CDS 30.0%
TCTTTATCAATTCATTCTCG+TGG + chr7_2:48936886-48936905 None:intergenic 30.0%
!! ATTTCCTCCATTTTTATCCT+TGG - chr7_2:48936915-48936934 Msa1060540:CDS 30.0%
!! TTTCCTCCATTTTTATCCTT+GGG - chr7_2:48936916-48936935 Msa1060540:CDS 30.0%
TCATGTACCAAAAATTGATG+TGG - chr7_2:48937021-48937040 Msa1060540:CDS 30.0%
AGAAAATTGCTGAAAGTGAA+TGG + chr7_2:48937559-48937578 None:intergenic 30.0%
! TTGTTCTTTTGCAGATTTCA+TGG - chr7_2:48937915-48937934 Msa1060540:CDS 30.0%
CTTAATAACTTCACATCTTC+AGG + chr7_2:48937958-48937977 None:intergenic 30.0%
!! CAATATCATAAGTACTGACT+TGG - chr7_2:48938035-48938054 Msa1060540:CDS 30.0%
! ACAGTAATGCTCATCTATTT+TGG + chr7_2:48938094-48938113 None:intergenic 30.0%
CTGAATGAAAGTAAGAACAA+GGG + chr7_2:48938205-48938224 None:intergenic 30.0%
TCTGAATGAAAGTAAGAACA+AGG + chr7_2:48938206-48938225 None:intergenic 30.0%
TTCTTACTTTCATTCAGACA+TGG - chr7_2:48938208-48938227 Msa1060540:CDS 30.0%
TTTCATTCAGACATGGTTTA+CGG - chr7_2:48938215-48938234 Msa1060540:CDS 30.0%
!! CTTCTCAGTGGATTTTTAAT+AGG - chr7_2:48938303-48938322 Msa1060540:CDS 30.0%
! TATCTTTGGTCGTGAATTTT+GGG + chr7_2:48936399-48936418 None:intergenic 30.0%
!! TTCCTATTTCTGAGATAATG+TGG + chr7_2:48936431-48936450 None:intergenic 30.0%
AGATAACATTTACGAACTGA+AGG - chr7_2:48936610-48936629 Msa1060540:CDS 30.0%
GATAACATTTACGAACTGAA+GGG - chr7_2:48936611-48936630 Msa1060540:CDS 30.0%
!!! GACGATGTTTTAACTTTAAC+AGG - chr7_2:48936644-48936663 Msa1060540:CDS 30.0%
TCTTTATCAATTCATTCTCG+TGG + chr7_2:48936886-48936905 None:intergenic 30.0%
!! ATTTCCTCCATTTTTATCCT+TGG - chr7_2:48936915-48936934 Msa1060540:CDS 30.0%
!! TTTCCTCCATTTTTATCCTT+GGG - chr7_2:48936916-48936935 Msa1060540:CDS 30.0%
TCATGTACCAAAAATTGATG+TGG - chr7_2:48937021-48937040 Msa1060540:CDS 30.0%
AGAAAATTGCTGAAAGTGAA+TGG + chr7_2:48937559-48937578 None:intergenic 30.0%
! TTGTTCTTTTGCAGATTTCA+TGG - chr7_2:48937915-48937934 Msa1060540:CDS 30.0%
CTTAATAACTTCACATCTTC+AGG + chr7_2:48937958-48937977 None:intergenic 30.0%
!! CAATATCATAAGTACTGACT+TGG - chr7_2:48938035-48938054 Msa1060540:CDS 30.0%
! ACAGTAATGCTCATCTATTT+TGG + chr7_2:48938094-48938113 None:intergenic 30.0%
CTGAATGAAAGTAAGAACAA+GGG + chr7_2:48938205-48938224 None:intergenic 30.0%
TCTGAATGAAAGTAAGAACA+AGG + chr7_2:48938206-48938225 None:intergenic 30.0%
TTCTTACTTTCATTCAGACA+TGG - chr7_2:48938208-48938227 Msa1060540:CDS 30.0%
TTTCATTCAGACATGGTTTA+CGG - chr7_2:48938215-48938234 Msa1060540:CDS 30.0%
!! CTTCTCAGTGGATTTTTAAT+AGG - chr7_2:48938303-48938322 Msa1060540:CDS 30.0%
!! GTGTGATGCTTTAGATTTTC+AGG + chr7_2:48936220-48936239 None:intergenic 35.0%
! ATCTTTGGTCGTGAATTTTG+GGG + chr7_2:48936398-48936417 None:intergenic 35.0%
! GTATCTTTGGTCGTGAATTT+TGG + chr7_2:48936400-48936419 None:intergenic 35.0%
ATTCACGACCAAAGATACAA+AGG - chr7_2:48936402-48936421 Msa1060540:three_prime_UTR 35.0%
TTCACGACCAAAGATACAAA+GGG - chr7_2:48936403-48936422 Msa1060540:three_prime_UTR 35.0%
TGCCACATTATCTCAGAAAT+AGG - chr7_2:48936426-48936445 Msa1060540:three_prime_UTR 35.0%
!!! TTTTCATTGCCATGATGGAT+AGG + chr7_2:48936497-48936516 None:intergenic 35.0%
! TCAGATTTTCATTGCCATGA+TGG + chr7_2:48936502-48936521 None:intergenic 35.0%
ATCATGGCAATGAAAATCTG+AGG - chr7_2:48936501-48936520 Msa1060540:three_prime_UTR 35.0%
! AGAGAAGTACAAGCTTATGT+GGG - chr7_2:48936529-48936548 Msa1060540:intron 35.0%
AAATACAAGATGCAATCCAG+AGG - chr7_2:48936568-48936587 Msa1060540:intron 35.0%
! TCAACTTGTTCTAGTGATGA+TGG - chr7_2:48936799-48936818 Msa1060540:CDS 35.0%
ACCAAAAATTGATGTGGATG+TGG - chr7_2:48937027-48937046 Msa1060540:CDS 35.0%
! TCCACATCCACATCAATTTT+TGG + chr7_2:48937031-48937050 None:intergenic 35.0%
AGAAGATCAAGAAGATGAGT+GGG + chr7_2:48937067-48937086 None:intergenic 35.0%
! CCTTTGATTTAGATGTGTTG+AGG + chr7_2:48937102-48937121 None:intergenic 35.0%
CCTCAACACATCTAAATCAA+AGG - chr7_2:48937099-48937118 Msa1060540:CDS 35.0%
AAAAATACTTACACCCCTTC+TGG - chr7_2:48937393-48937412 Msa1060540:intron 35.0%
! TATTGGTGACAATGTCACAA+GGG + chr7_2:48937446-48937465 None:intergenic 35.0%
! ATATTGGTGACAATGTCACA+AGG + chr7_2:48937447-48937466 None:intergenic 35.0%
TTGTCACCAATATCTACCAT+AGG - chr7_2:48937454-48937473 Msa1060540:intron 35.0%
!! TGTGGGCATTGACAATAATA+GGG + chr7_2:48937510-48937529 None:intergenic 35.0%
! TGTTTTCAAAGACACTGTGT+GGG + chr7_2:48937527-48937546 None:intergenic 35.0%
! GCTTTAAACATAAAGGGGTT+GGG + chr7_2:48937625-48937644 None:intergenic 35.0%
! TGCTTTAAACATAAAGGGGT+TGG + chr7_2:48937626-48937645 None:intergenic 35.0%
ATGAAGCTAGCTACAAGAAA+CGG - chr7_2:48937659-48937678 Msa1060540:intron 35.0%
ATTCAGAGATGAAGACATAC+AGG - chr7_2:48937692-48937711 Msa1060540:intron 35.0%
GTACAAAACCTAAAAGCAGT+CGG - chr7_2:48937718-48937737 Msa1060540:intron 35.0%
TCGGAGAAATCTATGTCTAA+TGG + chr7_2:48937775-48937794 None:intergenic 35.0%
TTAGACATAGATTTCTCCGA+AGG - chr7_2:48937775-48937794 Msa1060540:CDS 35.0%
! TTTCATATGCTATCAGGTTG+AGG + chr7_2:48937864-48937883 None:intergenic 35.0%
GACACATTTCATATGCTATC+AGG + chr7_2:48937870-48937889 None:intergenic 35.0%
ATAACTTCACATCTTCAGGA+TGG + chr7_2:48937954-48937973 None:intergenic 35.0%
! GGATTTTGCTTAATTCTCCT+TGG - chr7_2:48937986-48938005 Msa1060540:CDS 35.0%
! AAGCACCTTTATTTGTTAGC+CGG + chr7_2:48938246-48938265 None:intergenic 35.0%
!! GTGTGATGCTTTAGATTTTC+AGG + chr7_2:48936220-48936239 None:intergenic 35.0%
! ATCTTTGGTCGTGAATTTTG+GGG + chr7_2:48936398-48936417 None:intergenic 35.0%
! GTATCTTTGGTCGTGAATTT+TGG + chr7_2:48936400-48936419 None:intergenic 35.0%
ATTCACGACCAAAGATACAA+AGG - chr7_2:48936402-48936421 Msa1060540:three_prime_UTR 35.0%
TTCACGACCAAAGATACAAA+GGG - chr7_2:48936403-48936422 Msa1060540:three_prime_UTR 35.0%
TGCCACATTATCTCAGAAAT+AGG - chr7_2:48936426-48936445 Msa1060540:three_prime_UTR 35.0%
!!! TTTTCATTGCCATGATGGAT+AGG + chr7_2:48936497-48936516 None:intergenic 35.0%
! TCAGATTTTCATTGCCATGA+TGG + chr7_2:48936502-48936521 None:intergenic 35.0%
ATCATGGCAATGAAAATCTG+AGG - chr7_2:48936501-48936520 Msa1060540:three_prime_UTR 35.0%
! AGAGAAGTACAAGCTTATGT+GGG - chr7_2:48936529-48936548 Msa1060540:intron 35.0%
AAATACAAGATGCAATCCAG+AGG - chr7_2:48936568-48936587 Msa1060540:intron 35.0%
! TCAACTTGTTCTAGTGATGA+TGG - chr7_2:48936799-48936818 Msa1060540:CDS 35.0%
ACCAAAAATTGATGTGGATG+TGG - chr7_2:48937027-48937046 Msa1060540:CDS 35.0%
! TCCACATCCACATCAATTTT+TGG + chr7_2:48937031-48937050 None:intergenic 35.0%
AGAAGATCAAGAAGATGAGT+GGG + chr7_2:48937067-48937086 None:intergenic 35.0%
! CCTTTGATTTAGATGTGTTG+AGG + chr7_2:48937102-48937121 None:intergenic 35.0%
CCTCAACACATCTAAATCAA+AGG - chr7_2:48937099-48937118 Msa1060540:CDS 35.0%
AAAAATACTTACACCCCTTC+TGG - chr7_2:48937393-48937412 Msa1060540:intron 35.0%
! TATTGGTGACAATGTCACAA+GGG + chr7_2:48937446-48937465 None:intergenic 35.0%
! ATATTGGTGACAATGTCACA+AGG + chr7_2:48937447-48937466 None:intergenic 35.0%
TTGTCACCAATATCTACCAT+AGG - chr7_2:48937454-48937473 Msa1060540:intron 35.0%
!! TGTGGGCATTGACAATAATA+GGG + chr7_2:48937510-48937529 None:intergenic 35.0%
! TGTTTTCAAAGACACTGTGT+GGG + chr7_2:48937527-48937546 None:intergenic 35.0%
! GCTTTAAACATAAAGGGGTT+GGG + chr7_2:48937625-48937644 None:intergenic 35.0%
! TGCTTTAAACATAAAGGGGT+TGG + chr7_2:48937626-48937645 None:intergenic 35.0%
ATGAAGCTAGCTACAAGAAA+CGG - chr7_2:48937659-48937678 Msa1060540:intron 35.0%
ATTCAGAGATGAAGACATAC+AGG - chr7_2:48937692-48937711 Msa1060540:intron 35.0%
GTACAAAACCTAAAAGCAGT+CGG - chr7_2:48937718-48937737 Msa1060540:intron 35.0%
TCGGAGAAATCTATGTCTAA+TGG + chr7_2:48937775-48937794 None:intergenic 35.0%
TTAGACATAGATTTCTCCGA+AGG - chr7_2:48937775-48937794 Msa1060540:CDS 35.0%
! TTTCATATGCTATCAGGTTG+AGG + chr7_2:48937864-48937883 None:intergenic 35.0%
GACACATTTCATATGCTATC+AGG + chr7_2:48937870-48937889 None:intergenic 35.0%
ATAACTTCACATCTTCAGGA+TGG + chr7_2:48937954-48937973 None:intergenic 35.0%
! GGATTTTGCTTAATTCTCCT+TGG - chr7_2:48937986-48938005 Msa1060540:CDS 35.0%
! AAGCACCTTTATTTGTTAGC+CGG + chr7_2:48938246-48938265 None:intergenic 35.0%
ACCTATTGATACCAACTTGG+GGG + chr7_2:48936474-48936493 None:intergenic 40.0%
GACCTATTGATACCAACTTG+GGG + chr7_2:48936475-48936494 None:intergenic 40.0%
GGACCTATTGATACCAACTT+GGG + chr7_2:48936476-48936495 None:intergenic 40.0%
AGGACCTATTGATACCAACT+TGG + chr7_2:48936477-48936496 None:intergenic 40.0%
TCAATAGGTCCTATCCATCA+TGG - chr7_2:48936485-48936504 Msa1060540:three_prime_UTR 40.0%
! GGCAATGAAAATCTGAGGTT+AGG - chr7_2:48936506-48936525 Msa1060540:three_prime_UTR 40.0%
! GAGAGAAGTACAAGCTTATG+TGG - chr7_2:48936528-48936547 Msa1060540:intron 40.0%
ATCTTTCTGTGTAGATCCTC+TGG + chr7_2:48936587-48936606 None:intergenic 40.0%
TACGAACTGAAGGGTCAATT+TGG - chr7_2:48936620-48936639 Msa1060540:CDS 40.0%
TTAACAGGCAAGTCTCTTGA+AGG - chr7_2:48936659-48936678 Msa1060540:CDS 40.0%
ATGCTCTTTGCTGCATATCT+TGG - chr7_2:48936730-48936749 Msa1060540:CDS 40.0%
!!! GATGATGGATGTGCTTTTGT+TGG - chr7_2:48936814-48936833 Msa1060540:CDS 40.0%
AACTTCCTTATGCAGTACTC+AGG - chr7_2:48936843-48936862 Msa1060540:CDS 40.0%
! AATAGCCTGAGTACTGCATA+AGG + chr7_2:48936851-48936870 None:intergenic 40.0%
TGACCCAAGGATAAAAATGG+AGG + chr7_2:48936922-48936941 None:intergenic 40.0%
GTGTGACCCAAGGATAAAAA+TGG + chr7_2:48936925-48936944 None:intergenic 40.0%
CATGCAAAAGACTACCTATG+AGG - chr7_2:48936976-48936995 Msa1060540:CDS 40.0%
TGCTTCTTCATGAACCTCAT+AGG + chr7_2:48936993-48937012 None:intergenic 40.0%
CAGAAGATCAAGAAGATGAG+TGG + chr7_2:48937068-48937087 None:intergenic 40.0%
AATTGCATTCATCTCTCGAG+AGG - chr7_2:48937361-48937380 Msa1060540:intron 40.0%
ATGTCACAAGGGTGAAACAA+GGG + chr7_2:48937435-48937454 None:intergenic 40.0%
AATGTCACAAGGGTGAAACA+AGG + chr7_2:48937436-48937455 None:intergenic 40.0%
CGACTTCCTATGGTAGATAT+TGG + chr7_2:48937463-48937482 None:intergenic 40.0%
!! GTGTGGGCATTGACAATAAT+AGG + chr7_2:48937511-48937530 None:intergenic 40.0%
! GTGTTTTCAAAGACACTGTG+TGG + chr7_2:48937528-48937547 None:intergenic 40.0%
!! GTCTTATTCCGACTGCTTTT+AGG + chr7_2:48937729-48937748 None:intergenic 40.0%
ACATAGATTTCTCCGAAGGA+TGG - chr7_2:48937779-48937798 Msa1060540:CDS 40.0%
!! TATCAGGTTGAGGAAAGTAG+CGG + chr7_2:48937854-48937873 None:intergenic 40.0%
CCATAGTCGTTCTCAAAATC+TGG + chr7_2:48937892-48937911 None:intergenic 40.0%
!! CCAGATTTTGAGAACGACTA+TGG - chr7_2:48937889-48937908 Msa1060540:CDS 40.0%
TAATTCTCCTTGGAGTGATG+AGG - chr7_2:48937996-48938015 Msa1060540:CDS 40.0%
ATACAAGAATTGGATAGCGC+AGG - chr7_2:48938119-48938138 Msa1060540:CDS 40.0%
TACAAGAATTGGATAGCGCA+GGG - chr7_2:48938120-48938139 Msa1060540:CDS 40.0%
ACACTTACTTCAGCAATCCT+TGG - chr7_2:48938148-48938167 Msa1060540:CDS 40.0%
CACTTACTTCAGCAATCCTT+GGG - chr7_2:48938149-48938168 Msa1060540:CDS 40.0%
ATGAATGCAATAATGGCCCA+AGG + chr7_2:48938168-48938187 None:intergenic 40.0%
CGCAGCAATGAATGCAATAA+TGG + chr7_2:48938175-48938194 None:intergenic 40.0%
TTCACCCGGCTAACAAATAA+AGG - chr7_2:48938238-48938257 Msa1060540:CDS 40.0%
! AGCACCTTTATTTGTTAGCC+GGG + chr7_2:48938245-48938264 None:intergenic 40.0%
ACCTATTGATACCAACTTGG+GGG + chr7_2:48936474-48936493 None:intergenic 40.0%
GACCTATTGATACCAACTTG+GGG + chr7_2:48936475-48936494 None:intergenic 40.0%
GGACCTATTGATACCAACTT+GGG + chr7_2:48936476-48936495 None:intergenic 40.0%
AGGACCTATTGATACCAACT+TGG + chr7_2:48936477-48936496 None:intergenic 40.0%
TCAATAGGTCCTATCCATCA+TGG - chr7_2:48936485-48936504 Msa1060540:three_prime_UTR 40.0%
! GGCAATGAAAATCTGAGGTT+AGG - chr7_2:48936506-48936525 Msa1060540:three_prime_UTR 40.0%
! GAGAGAAGTACAAGCTTATG+TGG - chr7_2:48936528-48936547 Msa1060540:intron 40.0%
ATCTTTCTGTGTAGATCCTC+TGG + chr7_2:48936587-48936606 None:intergenic 40.0%
TACGAACTGAAGGGTCAATT+TGG - chr7_2:48936620-48936639 Msa1060540:CDS 40.0%
TTAACAGGCAAGTCTCTTGA+AGG - chr7_2:48936659-48936678 Msa1060540:CDS 40.0%
ATGCTCTTTGCTGCATATCT+TGG - chr7_2:48936730-48936749 Msa1060540:CDS 40.0%
!!! GATGATGGATGTGCTTTTGT+TGG - chr7_2:48936814-48936833 Msa1060540:CDS 40.0%
AACTTCCTTATGCAGTACTC+AGG - chr7_2:48936843-48936862 Msa1060540:CDS 40.0%
! AATAGCCTGAGTACTGCATA+AGG + chr7_2:48936851-48936870 None:intergenic 40.0%
TGACCCAAGGATAAAAATGG+AGG + chr7_2:48936922-48936941 None:intergenic 40.0%
GTGTGACCCAAGGATAAAAA+TGG + chr7_2:48936925-48936944 None:intergenic 40.0%
CATGCAAAAGACTACCTATG+AGG - chr7_2:48936976-48936995 Msa1060540:CDS 40.0%
TGCTTCTTCATGAACCTCAT+AGG + chr7_2:48936993-48937012 None:intergenic 40.0%
CAGAAGATCAAGAAGATGAG+TGG + chr7_2:48937068-48937087 None:intergenic 40.0%
AATTGCATTCATCTCTCGAG+AGG - chr7_2:48937361-48937380 Msa1060540:intron 40.0%
ATGTCACAAGGGTGAAACAA+GGG + chr7_2:48937435-48937454 None:intergenic 40.0%
AATGTCACAAGGGTGAAACA+AGG + chr7_2:48937436-48937455 None:intergenic 40.0%
CGACTTCCTATGGTAGATAT+TGG + chr7_2:48937463-48937482 None:intergenic 40.0%
!! GTGTGGGCATTGACAATAAT+AGG + chr7_2:48937511-48937530 None:intergenic 40.0%
! GTGTTTTCAAAGACACTGTG+TGG + chr7_2:48937528-48937547 None:intergenic 40.0%
!! GTCTTATTCCGACTGCTTTT+AGG + chr7_2:48937729-48937748 None:intergenic 40.0%
ACATAGATTTCTCCGAAGGA+TGG - chr7_2:48937779-48937798 Msa1060540:CDS 40.0%
!! TATCAGGTTGAGGAAAGTAG+CGG + chr7_2:48937854-48937873 None:intergenic 40.0%
CCATAGTCGTTCTCAAAATC+TGG + chr7_2:48937892-48937911 None:intergenic 40.0%
!! CCAGATTTTGAGAACGACTA+TGG - chr7_2:48937889-48937908 Msa1060540:CDS 40.0%
TAATTCTCCTTGGAGTGATG+AGG - chr7_2:48937996-48938015 Msa1060540:CDS 40.0%
ATACAAGAATTGGATAGCGC+AGG - chr7_2:48938119-48938138 Msa1060540:CDS 40.0%
TACAAGAATTGGATAGCGCA+GGG - chr7_2:48938120-48938139 Msa1060540:CDS 40.0%
ACACTTACTTCAGCAATCCT+TGG - chr7_2:48938148-48938167 Msa1060540:CDS 40.0%
CACTTACTTCAGCAATCCTT+GGG - chr7_2:48938149-48938168 Msa1060540:CDS 40.0%
ATGAATGCAATAATGGCCCA+AGG + chr7_2:48938168-48938187 None:intergenic 40.0%
CGCAGCAATGAATGCAATAA+TGG + chr7_2:48938175-48938194 None:intergenic 40.0%
TTCACCCGGCTAACAAATAA+AGG - chr7_2:48938238-48938257 Msa1060540:CDS 40.0%
! AGCACCTTTATTTGTTAGCC+GGG + chr7_2:48938245-48938264 None:intergenic 40.0%
TGTGGCACCCTTTGTATCTT+TGG + chr7_2:48936413-48936432 None:intergenic 45.0%
ATACCAACTTGGGGGAGTAA+AGG + chr7_2:48936466-48936485 None:intergenic 45.0%
!! TCCCCCAAGTTGGTATCAAT+AGG - chr7_2:48936470-48936489 Msa1060540:three_prime_UTR 45.0%
ACCTTGAAGAAAAGCTGTCG+TGG - chr7_2:48936690-48936709 Msa1060540:CDS 45.0%
! TCCACGACAGCTTTTCTTCA+AGG + chr7_2:48936694-48936713 None:intergenic 45.0%
GTGCTTTGGTTGATCAAGCT+TGG + chr7_2:48936762-48936781 None:intergenic 45.0%
ATGCAGTACTCAGGCTATTG+TGG - chr7_2:48936852-48936871 Msa1060540:CDS 45.0%
TCATTAACTGGTGTGACCCA+AGG + chr7_2:48936935-48936954 None:intergenic 45.0%
TTAATGAGTGGAGCAGGAGA+TGG - chr7_2:48936948-48936967 Msa1060540:CDS 45.0%
AGAAGATGAGTGGGTATCAC+TGG + chr7_2:48937058-48937077 None:intergenic 45.0%
TGTCACAAGGGTGAAACAAG+GGG + chr7_2:48937434-48937453 None:intergenic 45.0%
GGGTTGGGTCATCTTTCTTA+TGG + chr7_2:48937610-48937629 None:intergenic 45.0%
! TTTTGCAGCGAACCATCCTT+CGG + chr7_2:48937794-48937813 None:intergenic 45.0%
TGTGGCACCCTTTGTATCTT+TGG + chr7_2:48936413-48936432 None:intergenic 45.0%
ATACCAACTTGGGGGAGTAA+AGG + chr7_2:48936466-48936485 None:intergenic 45.0%
!! TCCCCCAAGTTGGTATCAAT+AGG - chr7_2:48936470-48936489 Msa1060540:three_prime_UTR 45.0%
ACCTTGAAGAAAAGCTGTCG+TGG - chr7_2:48936690-48936709 Msa1060540:CDS 45.0%
! TCCACGACAGCTTTTCTTCA+AGG + chr7_2:48936694-48936713 None:intergenic 45.0%
GTGCTTTGGTTGATCAAGCT+TGG + chr7_2:48936762-48936781 None:intergenic 45.0%
ATGCAGTACTCAGGCTATTG+TGG - chr7_2:48936852-48936871 Msa1060540:CDS 45.0%
TCATTAACTGGTGTGACCCA+AGG + chr7_2:48936935-48936954 None:intergenic 45.0%
TTAATGAGTGGAGCAGGAGA+TGG - chr7_2:48936948-48936967 Msa1060540:CDS 45.0%
AGAAGATGAGTGGGTATCAC+TGG + chr7_2:48937058-48937077 None:intergenic 45.0%
TGTCACAAGGGTGAAACAAG+GGG + chr7_2:48937434-48937453 None:intergenic 45.0%
GGGTTGGGTCATCTTTCTTA+TGG + chr7_2:48937610-48937629 None:intergenic 45.0%
! TTTTGCAGCGAACCATCCTT+CGG + chr7_2:48937794-48937813 None:intergenic 45.0%
!!! TTTTTTAATGAATAAATTTT+AGG - chr7_2:48938332-48938351 Msa1060540:CDS 5.0%
!!! TTTTTTAATGAATAAATTTT+AGG - chr7_2:48938332-48938351 Msa1060540:CDS 5.0%
GAACCTTTACTCCCCCAAGT+TGG - chr7_2:48936460-48936479 Msa1060540:three_prime_UTR 50.0%
GGCAAGTCTCTTGAAGGCTT+TGG - chr7_2:48936665-48936684 Msa1060540:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG - chr7_2:48936707-48936726 Msa1060540:CDS 50.0%
GGGTCACACCAGTTAATGAG+TGG - chr7_2:48936936-48936955 Msa1060540:CDS 50.0%
CACCAGTTAATGAGTGGAGC+AGG - chr7_2:48936942-48936961 Msa1060540:CDS 50.0%
CTCCTGCTCCACTCATTAAC+TGG + chr7_2:48936947-48936966 None:intergenic 50.0%
GACTCTTCCTGAGATCGTTG+TGG - chr7_2:48937816-48937835 Msa1060540:CDS 50.0%
GTGTTGTCCACAACGATCTC+AGG + chr7_2:48937826-48937845 None:intergenic 50.0%
GCAACTTCCTCATCACTCCA+AGG + chr7_2:48938006-48938025 None:intergenic 50.0%
GACATGGTTTACGGTTCACC+CGG - chr7_2:48938224-48938243 Msa1060540:CDS 50.0%
TGGCACTCATCACTTCTCAG+TGG - chr7_2:48938291-48938310 Msa1060540:CDS 50.0%
GAACCTTTACTCCCCCAAGT+TGG - chr7_2:48936460-48936479 Msa1060540:three_prime_UTR 50.0%
GGCAAGTCTCTTGAAGGCTT+TGG - chr7_2:48936665-48936684 Msa1060540:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG - chr7_2:48936707-48936726 Msa1060540:CDS 50.0%
GGGTCACACCAGTTAATGAG+TGG - chr7_2:48936936-48936955 Msa1060540:CDS 50.0%
CACCAGTTAATGAGTGGAGC+AGG - chr7_2:48936942-48936961 Msa1060540:CDS 50.0%
CTCCTGCTCCACTCATTAAC+TGG + chr7_2:48936947-48936966 None:intergenic 50.0%
GACTCTTCCTGAGATCGTTG+TGG - chr7_2:48937816-48937835 Msa1060540:CDS 50.0%
GTGTTGTCCACAACGATCTC+AGG + chr7_2:48937826-48937845 None:intergenic 50.0%
GCAACTTCCTCATCACTCCA+AGG + chr7_2:48938006-48938025 None:intergenic 50.0%
GACATGGTTTACGGTTCACC+CGG - chr7_2:48938224-48938243 Msa1060540:CDS 50.0%
TGGCACTCATCACTTCTCAG+TGG - chr7_2:48938291-48938310 Msa1060540:CDS 50.0%
GCTGTCGTGGATGTTGTTCG+TGG - chr7_2:48936703-48936722 Msa1060540:CDS 55.0%
TCAAGTCAAGCGCGACACGA+AGG - chr7_2:48937749-48937768 Msa1060540:CDS 55.0%
GCTGTCGTGGATGTTGTTCG+TGG - chr7_2:48936703-48936722 Msa1060540:CDS 55.0%
TCAAGTCAAGCGCGACACGA+AGG - chr7_2:48937749-48937768 Msa1060540:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 48936208 48938648 48936208 ID=Msa1060540;Name=Msa1060540
chr7_2 mRNA 48936208 48938648 48936208 ID=Msa1060540-mRNA-1;Parent=Msa1060540;Name=Msa1060540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|0.5|0.33|3|361|464
chr7_2 exon 48936208 48936545 48936208 ID=Msa1060540-mRNA-1:exon:8788;Parent=Msa1060540-mRNA-1
chr7_2 exon 48936576 48937207 48936576 ID=Msa1060540-mRNA-1:exon:8787;Parent=Msa1060540-mRNA-1
chr7_2 exon 48937736 48938648 48937736 ID=Msa1060540-mRNA-1:exon:8786;Parent=Msa1060540-mRNA-1
chr7_2 five_prime_UTR 48938522 48938648 48938522 ID=Msa1060540-mRNA-1:five_prime_utr;Parent=Msa1060540-mRNA-1
chr7_2 CDS 48937736 48938521 48937736 ID=Msa1060540-mRNA-1:cds;Parent=Msa1060540-mRNA-1
chr7_2 CDS 48936599 48937207 48936599 ID=Msa1060540-mRNA-1:cds;Parent=Msa1060540-mRNA-1
chr7_2 three_prime_UTR 48936576 48936598 48936576 ID=Msa1060540-mRNA-1:three_prime_utr;Parent=Msa1060540-mRNA-1
chr7_2 three_prime_UTR 48936208 48936545 48936208 ID=Msa1060540-mRNA-1:three_prime_utr;Parent=Msa1060540-mRNA-1
Gene Sequence

>Msa1060540

ATGATGGCATCCCAAACTATTAAAGAAAAATTTGTGGAGCTACAAAAATCAAAGCAAACACCCCAAAATTCACGACCAAAGATACAAAGGGTGCCACATTATCTCAGAAATAGGAAAAAATTTGAGAACCTTTACTCCCCCAAGTTGGTATCAATAGGTCCTATCCATCATGGCAATGAAAATCTGAGGTTAGGAGAGAAGTACAAGCTTATGTGGGCAGCTGAATACATTGAAAATACAAGATGCAATCCAGAGGATCTACACAGAAAGATTGCAGATAACATTTACGAACTGAAGGGTCAATTTGGCGACGATGTTTTAACTTTAACAGGCAAGTCTCTTGAAGGCTTTGGTAACCTTGAAGAAAAGCTGTCGTGGATGTTGTTCGTGGATGGATGCTCTTTGCTGCATATCTTGGAGAAAGCCAAGCTTGATCAACCAAAGCACATGAATATTAAAGTTGATCAACTTGTTCTAGTGATGATGGATGTGCTTTTGTTGGAGAATCAACTTCCTTATGCAGTACTCAGGCTATTGTGGAAAGCTGACCACGAGAATGAATTGATAAAGACCATGAAAAATTTCCTCCATTTTTATCCTTGGGTCACACCAGTTAATGAGTGGAGCAGGAGATGGAAACGCATGCAAAAGACTACCTATGAGGTTCATGAAGAAGCAGAGCATCTTCATGTACCAAAAATTGATGTGGATGTGGATGCGCCAGTGATACCCACTCATCTTCTTGATCTTCTGCGTAAAATCATCCTCAACACATCTAAATCAAAGACTGAAAGCAATGAAGCTAGCTACAAGAAACGGAGTCAGATGAATTCAGAGATGAAGACATACAGGAGCGTACAAAACCTAAAAGCAGTCGGAATAAGACTCAAGTCAAGCGCGACACGAAGGCCATTAGACATAGATTTCTCCGAAGGATGGTTCGCTGCAAAACTGACTCTTCCTGAGATCGTTGTGGACAACACTGTAGCCGCTACTTTCCTCAACCTGATAGCATATGAAATGTGTCCAGATTTTGAGAACGACTATGGAATTTGTTCTTTTGCAGATTTCATGGACTCACTCATCGACCATCCTGAAGATGTGAAGTTATTAAGATCAAAAGGGATTTTGCTTAATTCTCCTTGGAGTGATGAGGAAGTTGCCGATCTTTTCAATATCATAAGTACTGACTTGGTACCTAACACACAAACATATTTTGATGTTAGAGCCAAAATAGATGAGCATTACTGTAATAAATACAAGAATTGGATAGCGCAGGGTCTTAACACTTACTTCAGCAATCCTTGGGCCATTATTGCATTCATTGCTGCGTTTATCGCCCTTGTTCTTACTTTCATTCAGACATGGTTTACGGTTCACCCGGCTAACAAATAA
Protein sequence

>Msa1060540

MMASQTIKEKFVELQKSKQTPQNSRPKIQRVPHYLRNRKKFENLYSPKLVSIGPIHHGNENLRLGEKYKLMWAAEYIENTRCNPEDLHRKIADNIYELKGQFGDDVLTLTGKSLEGFGNLEEKLSWMLFVDGCSLLHILEKAKLDQPKHMNIKVDQLVLVMMDVLLLENQLPYAVLRLLWKADHENELIKTMKNFLHFYPWVTPVNEWSRRWKRMQKTTYEVHEEAEHLHVPKIDVDVDAPVIPTHLLDLLRKIILNTSKSKTESNEASYKKRSQMNSEMKTYRSVQNLKAVGIRLKSSATRRPLDIDFSEGWFAAKLTLPEIVVDNTVAATFLNLIAYEMCPDFENDYGICSFADFMDSLIDHPEDVKLLRSKGILLNSPWSDEEVADLFNIISTDLVPNTQTYFDVRAKIDEHYCNKYKNWIAQGLNTYFSNPWAIIAFIAAFIALVLTFIQTWFTVHPANK*