Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144450 | XP_024633433.1 | 49.537 | 216 | 107 | 1 | 1 | 216 | 28 | 241 | 1.85e-67 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144450 | A0A396HMX6 | 47.907 | 215 | 110 | 1 | 2 | 216 | 29 | 241 | 1.59e-61 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1144450 | 0.826928 | 2.072196e-54 | -8.615850e-47 |
| Msa0001940 | Msa1144450 | 0.820271 | 7.489646e-53 | -8.615850e-47 |
| Msa0009180 | Msa1144450 | 0.811281 | 7.574277e-51 | -8.615850e-47 |
| Msa0017950 | Msa1144450 | 0.811235 | 7.747493e-51 | -8.615850e-47 |
| Msa0024550 | Msa1144450 | 0.851517 | 8.429146e-61 | -8.615850e-47 |
| Msa0044090 | Msa1144450 | 0.814015 | 1.910407e-51 | -8.615850e-47 |
| Msa0051020 | Msa1144450 | 0.802989 | 4.318508e-49 | -8.615850e-47 |
| Msa0061340 | Msa1144450 | 0.809346 | 1.980293e-50 | -8.615850e-47 |
| Msa0074600 | Msa1144450 | 0.814819 | 1.268632e-51 | -8.615850e-47 |
| Msa0075470 | Msa1144450 | 0.802917 | 4.468765e-49 | -8.615850e-47 |
| Msa0079070 | Msa1144450 | 0.800630 | 1.317284e-48 | -8.615850e-47 |
| Msa0089750 | Msa1144450 | 0.835122 | 2.016138e-56 | -8.615850e-47 |
| Msa0097770 | Msa1144450 | 0.808084 | 3.684247e-50 | -8.615850e-47 |
| Msa0099210 | Msa1144450 | 0.807419 | 5.101743e-50 | -8.615850e-47 |
| Msa0101270 | Msa1144450 | 0.801345 | 9.409454e-49 | -8.615850e-47 |
| Msa0103770 | Msa1144450 | 0.822466 | 2.333178e-53 | -8.615850e-47 |
| Msa0108410 | Msa1144450 | 0.813910 | 2.014792e-51 | -8.615850e-47 |
| Msa0120400 | Msa1144450 | 0.846704 | 1.837056e-59 | -8.615850e-47 |
| Msa0617500 | Msa1144450 | 0.811286 | 7.552333e-51 | -8.615850e-47 |
| Msa0624420 | Msa1144450 | 0.812453 | 4.206767e-51 | -8.615850e-47 |
| Msa0645300 | Msa1144450 | 0.802911 | 4.480400e-49 | -8.615850e-47 |
| Msa0680660 | Msa1144450 | 0.806535 | 7.848764e-50 | -8.615850e-47 |
| Msa0681250 | Msa1144450 | 0.815395 | 9.448757e-52 | -8.615850e-47 |
| Msa0681270 | Msa1144450 | 0.807769 | 4.299919e-50 | -8.615850e-47 |
| Msa0700300 | Msa1144450 | 0.800458 | 1.427428e-48 | -8.615850e-47 |
| Msa0703780 | Msa1144450 | 0.803136 | 4.026341e-49 | -8.615850e-47 |
| Msa0709270 | Msa1144450 | 0.829217 | 5.824520e-55 | -8.615850e-47 |
| Msa0720690 | Msa1144450 | 0.809780 | 1.597776e-50 | -8.615850e-47 |
| Msa0731940 | Msa1144450 | 0.834719 | 2.546994e-56 | -8.615850e-47 |
| Msa0733390 | Msa1144450 | 0.801718 | 7.888825e-49 | -8.615850e-47 |
| Msa0756460 | Msa1144450 | 0.830071 | 3.609795e-55 | -8.615850e-47 |
| Msa0760130 | Msa1144450 | 0.818941 | 1.507231e-52 | -8.615850e-47 |
| Msa0768370 | Msa1144450 | 0.803004 | 4.286042e-49 | -8.615850e-47 |
| Msa0800210 | Msa1144450 | 0.803733 | 3.027992e-49 | -8.615850e-47 |
| Msa0805330 | Msa1144450 | 0.801684 | 8.017061e-49 | -8.615850e-47 |
| Msa0810220 | Msa1144450 | 0.809139 | 2.193175e-50 | -8.615850e-47 |
| Msa0829330 | Msa1144450 | 0.800682 | 1.285472e-48 | -8.615850e-47 |
| Msa0832340 | Msa1144450 | 0.849107 | 3.998613e-60 | -8.615850e-47 |
| Msa0131770 | Msa1144450 | 0.838799 | 2.320663e-57 | -8.615850e-47 |
| Msa0164330 | Msa1144450 | 0.826141 | 3.192145e-54 | -8.615850e-47 |
| Msa0178740 | Msa1144450 | 0.803774 | 2.969629e-49 | -8.615850e-47 |
| Msa0183760 | Msa1144450 | 0.806117 | 9.610441e-50 | -8.615850e-47 |
| Msa0186010 | Msa1144450 | 0.801004 | 1.104804e-48 | -8.615850e-47 |
| Msa0189040 | Msa1144450 | 0.802026 | 6.819088e-49 | -8.615850e-47 |
| Msa0189930 | Msa1144450 | -0.806013 | 1.010761e-49 | -8.615850e-47 |
| Msa0195100 | Msa1144450 | 0.808636 | 2.810130e-50 | -8.615850e-47 |
| Msa0211150 | Msa1144450 | 0.810804 | 9.605409e-51 | -8.615850e-47 |
| Msa0212990 | Msa1144450 | 0.804216 | 2.402403e-49 | -8.615850e-47 |
| Msa0218810 | Msa1144450 | 0.804908 | 1.723077e-49 | -8.615850e-47 |
| Msa0219590 | Msa1144450 | 0.811964 | 5.379427e-51 | -8.615850e-47 |
| Msa0225100 | Msa1144450 | 0.819211 | 1.308345e-52 | -8.615850e-47 |
| Msa0230320 | Msa1144450 | 0.805049 | 1.610563e-49 | -8.615850e-47 |
| Msa0232020 | Msa1144450 | 0.800939 | 1.139259e-48 | -8.615850e-47 |
| Msa0237420 | Msa1144450 | 0.830522 | 2.800861e-55 | -8.615850e-47 |
| Msa0364340 | Msa1144450 | 0.814023 | 1.903050e-51 | -8.615850e-47 |
| Msa0367870 | Msa1144450 | 0.822303 | 2.545821e-53 | -8.615850e-47 |
| Msa0378720 | Msa1144450 | 0.811148 | 8.093703e-51 | -8.615850e-47 |
| Msa0388340 | Msa1144450 | 0.827431 | 1.570117e-54 | -8.615850e-47 |
| Msa0389770 | Msa1144450 | 0.811123 | 8.193875e-51 | -8.615850e-47 |
| Msa0403640 | Msa1144450 | 0.815234 | 1.026209e-51 | -8.615850e-47 |
| Msa0405130 | Msa1144450 | 0.818830 | 1.597412e-52 | -8.615850e-47 |
| Msa0409690 | Msa1144450 | 0.806117 | 9.611677e-50 | -8.615850e-47 |
| Msa0413410 | Msa1144450 | 0.826757 | 2.276694e-54 | -8.615850e-47 |
| Msa0427100 | Msa1144450 | 0.810280 | 1.246921e-50 | -8.615850e-47 |
| Msa0427120 | Msa1144450 | 0.813319 | 2.718355e-51 | -8.615850e-47 |
| Msa0440750 | Msa1144450 | 0.801725 | 7.862939e-49 | -8.615850e-47 |
| Msa0450400 | Msa1144450 | -0.815771 | 7.792551e-52 | -8.615850e-47 |
| Msa0452710 | Msa1144450 | 0.804382 | 2.218973e-49 | -8.615850e-47 |
| Msa0460590 | Msa1144450 | 0.814356 | 1.606080e-51 | -8.615850e-47 |
| Msa0464680 | Msa1144450 | 0.813556 | 2.411179e-51 | -8.615850e-47 |
| Msa0474730 | Msa1144450 | 0.802012 | 6.863963e-49 | -8.615850e-47 |
| Msa0980200 | Msa1144450 | 0.941324 | 5.068883e-101 | -8.615850e-47 |
| Msa0997370 | Msa1144450 | 0.845805 | 3.228738e-59 | -8.615850e-47 |
| Msa0999220 | Msa1144450 | 0.807896 | 4.040610e-50 | -8.615850e-47 |
| Msa1002850 | Msa1144450 | 0.812618 | 3.873224e-51 | -8.615850e-47 |
| Msa1004800 | Msa1144450 | 0.802642 | 5.092233e-49 | -8.615850e-47 |
| Msa1004840 | Msa1144450 | 0.804591 | 2.007246e-49 | -8.615850e-47 |
| Msa1016320 | Msa1144450 | 0.809830 | 1.558490e-50 | -8.615850e-47 |
| Msa1017750 | Msa1144450 | 0.816930 | 4.290383e-52 | -8.615850e-47 |
| Msa1019000 | Msa1144450 | 0.808443 | 3.088856e-50 | -8.615850e-47 |
| Msa1019150 | Msa1144450 | 0.813945 | 1.979487e-51 | -8.615850e-47 |
| Msa1019430 | Msa1144450 | 0.805707 | 1.172362e-49 | -8.615850e-47 |
| Msa1019470 | Msa1144450 | 0.804404 | 2.195790e-49 | -8.615850e-47 |
| Msa1029810 | Msa1144450 | 0.805692 | 1.180839e-49 | -8.615850e-47 |
| Msa1034500 | Msa1144450 | 0.804819 | 1.798462e-49 | -8.615850e-47 |
| Msa1036610 | Msa1144450 | 0.803258 | 3.798638e-49 | -8.615850e-47 |
| Msa1043370 | Msa1144450 | 0.804170 | 2.455966e-49 | -8.615850e-47 |
| Msa1060540 | Msa1144450 | 0.811960 | 5.390831e-51 | -8.615850e-47 |
| Msa1066670 | Msa1144450 | 0.815605 | 8.486601e-52 | -8.615850e-47 |
| Msa1075540 | Msa1144450 | 0.810245 | 1.268438e-50 | -8.615850e-47 |
| Msa1083840 | Msa1144450 | 0.811909 | 5.531094e-51 | -8.615850e-47 |
| Msa1101090 | Msa1144450 | 0.842640 | 2.285591e-58 | -8.615850e-47 |
| Msa1104560 | Msa1144450 | 0.812781 | 3.566459e-51 | -8.615850e-47 |
| Msa0244640 | Msa1144450 | 0.830036 | 3.681253e-55 | -8.615850e-47 |
| Msa0251640 | Msa1144450 | 0.810815 | 9.552675e-51 | -8.615850e-47 |
| Msa0259210 | Msa1144450 | 0.815622 | 8.413306e-52 | -8.615850e-47 |
| Msa0266180 | Msa1144450 | 0.820520 | 6.566702e-53 | -8.615850e-47 |
| Msa0283330 | Msa1144450 | 0.818470 | 1.927407e-52 | -8.615850e-47 |
| Msa0287740 | Msa1144450 | 0.817624 | 2.994275e-52 | -8.615850e-47 |
| Msa0290870 | Msa1144450 | 0.834625 | 2.689576e-56 | -8.615850e-47 |
| Msa0292930 | Msa1144450 | 0.811583 | 6.510340e-51 | -8.615850e-47 |
| Msa0308630 | Msa1144450 | 0.818271 | 2.138917e-52 | -8.615850e-47 |
| Msa0317000 | Msa1144450 | 0.807819 | 4.194506e-50 | -8.615850e-47 |
| Msa0317970 | Msa1144450 | 0.801068 | 1.072100e-48 | -8.615850e-47 |
| Msa0321620 | Msa1144450 | 0.820109 | 8.159758e-53 | -8.615850e-47 |
| Msa0330340 | Msa1144450 | 0.808965 | 2.390126e-50 | -8.615850e-47 |
| Msa0336310 | Msa1144450 | 0.815622 | 8.412816e-52 | -8.615850e-47 |
| Msa0336320 | Msa1144450 | 0.827056 | 1.931498e-54 | -8.615850e-47 |
| Msa0337580 | Msa1144450 | 0.808415 | 3.132749e-50 | -8.615850e-47 |
| Msa0342750 | Msa1144450 | 0.842210 | 2.971377e-58 | -8.615850e-47 |
| Msa0348090 | Msa1144450 | 0.808770 | 2.630970e-50 | -8.615850e-47 |
| Msa1108760 | Msa1144450 | 0.812641 | 3.827833e-51 | -8.615850e-47 |
| Msa1121480 | Msa1144450 | 0.837263 | 5.763809e-57 | -8.615850e-47 |
| Msa1121490 | Msa1144450 | 0.860428 | 2.080543e-63 | -8.615850e-47 |
| Msa1131050 | Msa1144450 | 0.802847 | 4.619862e-49 | -8.615850e-47 |
| Msa1137570 | Msa1144450 | 0.825385 | 4.824825e-54 | -8.615850e-47 |
| Msa1142670 | Msa1144450 | 0.826240 | 3.024582e-54 | -8.615850e-47 |
| Msa1144450 | Msa1147740 | 0.825885 | 3.672892e-54 | -8.615850e-47 |
| Msa1144450 | Msa1148000 | 0.803237 | 3.837322e-49 | -8.615850e-47 |
| Msa1144450 | Msa1155170 | -0.812535 | 4.038486e-51 | -8.615850e-47 |
| Msa1144450 | Msa1186640 | 0.801315 | 9.543803e-49 | -8.615850e-47 |
| Msa1144450 | Msa1188710 | 0.806725 | 7.154883e-50 | -8.615850e-47 |
| Msa1144450 | Msa1190920 | 0.809817 | 1.568625e-50 | -8.615850e-47 |
| Msa1144450 | Msa1211230 | -0.802902 | 4.499648e-49 | -8.615850e-47 |
| Msa1144450 | Msa1221230 | 0.803748 | 3.006701e-49 | -8.615850e-47 |
| Msa1144450 | Msa1225860 | -0.812833 | 3.475259e-51 | -8.615850e-47 |
| Msa1144450 | Msa1226460 | 0.829357 | 5.385791e-55 | -8.615850e-47 |
| Msa1144450 | Msa1232740 | 0.828397 | 9.196888e-55 | -8.615850e-47 |
| Msa1144450 | Msa1236410 | 0.813062 | 3.095425e-51 | -8.615850e-47 |
| Msa1144450 | Msa1238820 | 0.829395 | 5.272983e-55 | -8.615850e-47 |
| Msa1144450 | Msa1242670 | 0.816123 | 6.502934e-52 | -8.615850e-47 |
| Msa1144450 | Msa1243490 | 0.816360 | 5.755375e-52 | -8.615850e-47 |
| Msa1144450 | Msa1248310 | 0.832064 | 1.169940e-55 | -8.615850e-47 |
| Msa1144450 | Msa1248370 | 0.848216 | 7.060274e-60 | -8.615850e-47 |
| Msa1144450 | Msa1271130 | 0.819298 | 1.250024e-52 | -8.615850e-47 |
| Msa1144450 | Msa1272680 | 0.814091 | 1.838066e-51 | -8.615850e-47 |
| Msa1144450 | Msa1284680 | 0.813461 | 2.529597e-51 | -8.615850e-47 |
| Msa1144450 | Msa1285550 | 0.848055 | 7.821336e-60 | -8.615850e-47 |
| Msa1144450 | Msa1286800 | 0.846329 | 2.326112e-59 | -8.615850e-47 |
| Msa1144450 | Msa1287190 | 0.817964 | 2.509075e-52 | -8.615850e-47 |
| Msa1144450 | Msa1287220 | 0.822400 | 2.417609e-53 | -8.615850e-47 |
| Msa1144450 | Msa1288560 | 0.804462 | 2.135906e-49 | -8.615850e-47 |
| Msa1144450 | Msa1297230 | 0.801720 | 7.881250e-49 | -8.615850e-47 |
| Msa1144450 | Msa1299400 | -0.809168 | 2.161951e-50 | -8.615850e-47 |
| Msa1144450 | Msa1313320 | 0.823802 | 1.138181e-53 | -8.615850e-47 |
| Msa1144450 | Msa1325410 | -0.819303 | 1.246925e-52 | -8.615850e-47 |
| Msa1144450 | Msa1325920 | 0.817329 | 3.489468e-52 | -8.615850e-47 |
| Msa1144450 | Msa1330420 | 0.807904 | 4.025253e-50 | -8.615850e-47 |
| Msa1144450 | Msa1333480 | 0.807499 | 4.907151e-50 | -8.615850e-47 |
| Msa1144450 | Msa1341840 | 0.805781 | 1.130810e-49 | -8.615850e-47 |
| Msa1144450 | Msa1345100 | 0.816037 | 6.798383e-52 | -8.615850e-47 |
| Msa1144450 | Msa1355450 | 0.828674 | 7.883939e-55 | -8.615850e-47 |
| Msa1144450 | Msa1357790 | 0.805696 | 1.178480e-49 | -8.615850e-47 |
| Msa1144450 | Msa1366340 | 0.815926 | 7.197556e-52 | -8.615850e-47 |
| Msa1144450 | Msa1366810 | 0.826392 | 2.781564e-54 | -8.615850e-47 |
| Msa1144450 | Msa1382400 | 0.813895 | 2.030714e-51 | -8.615850e-47 |
| Msa1144450 | Msa1385890 | 0.801046 | 1.082941e-48 | -8.615850e-47 |
| Msa1144450 | Msa1390690 | 0.816020 | 6.859206e-52 | -8.615850e-47 |
| Msa1144450 | Msa1390700 | 0.834204 | 3.430994e-56 | -8.615850e-47 |
| Msa1144450 | Msa1392900 | 0.818269 | 2.140360e-52 | -8.615850e-47 |
| Msa1144450 | Msa1392910 | 0.829377 | 5.327491e-55 | -8.615850e-47 |
| Msa1144450 | Msa1395900 | 0.803065 | 4.165279e-49 | -8.615850e-47 |
| Msa1144450 | Msa1412540 | 0.809578 | 1.765431e-50 | -8.615850e-47 |
| Msa1144450 | Msa1423780 | 0.824971 | 6.042987e-54 | -8.615850e-47 |
| Msa1144450 | Msa1425090 | 0.802132 | 6.486967e-49 | -8.615850e-47 |
| Msa1144450 | Msa1425880 | 0.800922 | 1.147987e-48 | -8.615850e-47 |
| Msa1144450 | Msa1444510 | 0.815015 | 1.147787e-51 | -8.615850e-47 |
| Msa1144450 | Msa1452710 | 0.811277 | 7.589504e-51 | -8.615850e-47 |
| Msa1144450 | Msa1466540 | 0.813901 | 2.024239e-51 | -8.615850e-47 |
| Msa0484650 | Msa1144450 | 0.805674 | 1.191072e-49 | -8.615850e-47 |
| Msa0519830 | Msa1144450 | 0.803340 | 3.652321e-49 | -8.615850e-47 |
| Msa0530050 | Msa1144450 | 0.803357 | 3.622957e-49 | -8.615850e-47 |
| Msa0545700 | Msa1144450 | 0.811021 | 8.622008e-51 | -8.615850e-47 |
| Msa0556430 | Msa1144450 | 0.991829 | 9.017913e-190 | -8.615850e-47 |
| Msa0581470 | Msa1144450 | 0.813427 | 2.574182e-51 | -8.615850e-47 |
| Msa0583360 | Msa1144450 | -0.812361 | 4.407370e-51 | -8.615850e-47 |
| Msa0600700 | Msa1144450 | 0.821631 | 3.644259e-53 | -8.615850e-47 |
| Msa0601540 | Msa1144450 | 0.816032 | 6.816168e-52 | -8.615850e-47 |
| Msa0844420 | Msa1144450 | 0.800021 | 1.752351e-48 | -8.615850e-47 |
| Msa0844490 | Msa1144450 | 0.847957 | 8.324321e-60 | -8.615850e-47 |
| Msa0848990 | Msa1144450 | 0.806286 | 8.854362e-50 | -8.615850e-47 |
| Msa0855870 | Msa1144450 | 0.800245 | 1.577739e-48 | -8.615850e-47 |
| Msa0870380 | Msa1144450 | 0.800768 | 1.234215e-48 | -8.615850e-47 |
| Msa0870610 | Msa1144450 | 0.817460 | 3.259990e-52 | -8.615850e-47 |
| Msa0875290 | Msa1144450 | 0.822127 | 2.796812e-53 | -8.615850e-47 |
| Msa0888130 | Msa1144450 | 0.825251 | 5.189242e-54 | -8.615850e-47 |
| Msa0899430 | Msa1144450 | 0.822303 | 2.545996e-53 | -8.615850e-47 |
| Msa0899450 | Msa1144450 | 0.813568 | 2.397039e-51 | -8.615850e-47 |
| Msa0900910 | Msa1144450 | 0.818115 | 2.319899e-52 | -8.615850e-47 |
| Msa0902510 | Msa1144450 | 0.812189 | 4.803713e-51 | -8.615850e-47 |
| Msa0907950 | Msa1144450 | 0.808479 | 3.034956e-50 | -8.615850e-47 |
| Msa0907960 | Msa1144450 | 0.800815 | 1.207114e-48 | -8.615850e-47 |
| Msa0914270 | Msa1144450 | 0.824796 | 6.647205e-54 | -8.615850e-47 |
| Msa0927380 | Msa1144450 | 0.810888 | 9.214920e-51 | -8.615850e-47 |
| Msa0935640 | Msa1144450 | 0.801422 | 9.073596e-49 | -8.615850e-47 |
| Msa0958550 | Msa1144450 | 0.814170 | 1.765808e-51 | -8.615850e-47 |
| Msa0964900 | Msa1144450 | 0.801655 | 8.128818e-49 | -8.615850e-47 |
| Msa0967280 | Msa1144450 | 0.826172 | 3.137924e-54 | -8.615850e-47 |
| Msa0967380 | Msa1144450 | 0.858871 | 6.116099e-63 | -8.615850e-47 |
| Msa0967870 | Msa1144450 | 0.817144 | 3.839917e-52 | -8.615850e-47 |
| Msa0969520 | Msa1144450 | 0.808105 | 3.646526e-50 | -8.615850e-47 |
| Msa0973190 | Msa1144450 | 0.806206 | 9.206263e-50 | -8.615850e-47 |
| Msa0974080 | Msa1144450 | 0.819892 | 9.147031e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144450 | MtrunA17_Chr5g0393501 | 47.907 | 215 | 110 | 1 | 2 | 216 | 29 | 241 | 3.06e-65 | 202 |
| Msa1144450 | MtrunA17_Chr4g0044671 | 25.500 | 200 | 142 | 2 | 7 | 204 | 15 | 209 | 5.19e-12 | 63.2 |
| Msa1144450 | MtrunA17_Chr4g0034781 | 26.000 | 200 | 141 | 2 | 7 | 204 | 9 | 203 | 5.75e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCTAATATTGATGAATT+TGG | 0.071532 | 7_4:+20491209 | Msa1144450:CDS |
| TATAAGGCATTGTTAAAATT+TGG | 0.194239 | 7_4:-20490998 | None:intergenic |
| AAGAATTCCGCAATGAAAAT+TGG | 0.202897 | 7_4:-20490909 | None:intergenic |
| TGATGAATTTGGGACAAAAT+TGG | 0.234698 | 7_4:+20491220 | Msa1144450:CDS |
| TACTATGAAATCAATGATTA+TGG | 0.240311 | 7_4:+20491050 | Msa1144450:CDS |
| CATCTTCCTTTCATTCATAA+TGG | 0.274505 | 7_4:+20490745 | Msa1144450:exon |
| GTCCCAAATTCATCAATATT+AGG | 0.280924 | 7_4:-20491212 | None:intergenic |
| GTTTAAGTGTGACTCAATTA+TGG | 0.303074 | 7_4:+20491524 | Msa1144450:CDS |
| TGCCTAATATTGATGAATTT+GGG | 0.308974 | 7_4:+20491210 | Msa1144450:CDS |
| CTAAATATGTAAAAGATATT+AGG | 0.309400 | 7_4:-20491073 | None:intergenic |
| ACCGTGGAAATTCGTTTGTT+TGG | 0.318850 | 7_4:-20491136 | None:intergenic |
| TCCCAACAAAAGGTAATATA+AGG | 0.319342 | 7_4:-20491014 | None:intergenic |
| TTGCATACAGTGATGAAATA+AGG | 0.320941 | 7_4:-20490779 | None:intergenic |
| GGAAATTCGTTTGTTTGGAT+TGG | 0.329638 | 7_4:-20491131 | None:intergenic |
| GAAATTCGTTTGTTTGGATT+GGG | 0.339538 | 7_4:-20491130 | None:intergenic |
| TGCGGAATTCTTCAATGAAC+TGG | 0.345003 | 7_4:+20490920 | Msa1144450:CDS |
| TTCCACATACACGTGTTTCA+TGG | 0.348799 | 7_4:+20491107 | Msa1144450:CDS |
| TTAAACTCTAAAATATCATT+TGG | 0.369978 | 7_4:-20491507 | None:intergenic |
| CAGATCTTACCAAATGACTT+TGG | 0.384038 | 7_4:+20491321 | Msa1144450:intron |
| TGCGAGTTATAGATGTAGTT+TGG | 0.385150 | 7_4:-20491166 | None:intergenic |
| CAATGAACTGGATGAACAAT+GGG | 0.420513 | 7_4:+20490932 | Msa1144450:CDS |
| ACACAAACTATTGTTAAGAT+AGG | 0.424067 | 7_4:+20491444 | Msa1144450:CDS |
| AATATTACAATACTTAAAAC+AGG | 0.460074 | 7_4:-20491593 | None:intergenic |
| TCCCAATGATTCCCAACAAA+AGG | 0.467567 | 7_4:-20491024 | None:intergenic |
| CATTCTCATTTACGATTGTG+TGG | 0.506907 | 7_4:+20491366 | Msa1144450:CDS |
| AGTGATGAAATAAGGTCTGT+TGG | 0.517513 | 7_4:-20490771 | None:intergenic |
| CATTATGAATGAAAGGAAGA+TGG | 0.523264 | 7_4:-20490744 | None:intergenic |
| TTGTTAAGATAGGACGTAGC+TGG | 0.529092 | 7_4:+20491454 | Msa1144450:CDS |
| GGTTAAATACAACAATGTGT+TGG | 0.550805 | 7_4:-20490977 | None:intergenic |
| TCAATGAACTGGATGAACAA+TGG | 0.558244 | 7_4:+20490931 | Msa1144450:CDS |
| GGCCATGAAACACGTGTATG+TGG | 0.560867 | 7_4:-20491109 | None:intergenic |
| TGGAGTCCATTATGAATGAA+AGG | 0.569698 | 7_4:-20490751 | None:intergenic |
| GGAATGGTGATAATTAGTAA+TGG | 0.583941 | 7_4:-20491653 | None:intergenic |
| TCCAAACAAACGAATTTCCA+CGG | 0.596587 | 7_4:+20491135 | Msa1144450:CDS |
| GTAGTTTGGCTATGATACCG+TGG | 0.697972 | 7_4:-20491152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTATTTTTTAGCATAA+AGG | - | chr7_4:20491484-20491503 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTAGCATAA+AGG | - | chr7_4:20491484-20491503 | None:intergenic | 10.0% |
| !! | CTAAATATGTAAAAGATATT+AGG | - | chr7_4:20491076-20491095 | None:intergenic | 15.0% |
| !!! | CTAATATCTTTTACATATTT+AGG | + | chr7_4:20491074-20491093 | Msa1144450:CDS | 15.0% |
| !!! | TTAAACTCTAAAATATCATT+TGG | - | chr7_4:20491510-20491529 | None:intergenic | 15.0% |
| !! | AATATTACAATACTTAAAAC+AGG | - | chr7_4:20491596-20491615 | None:intergenic | 15.0% |
| !! | CTAAATATGTAAAAGATATT+AGG | - | chr7_4:20491076-20491095 | None:intergenic | 15.0% |
| !!! | CTAATATCTTTTACATATTT+AGG | + | chr7_4:20491074-20491093 | Msa1144450:CDS | 15.0% |
| !!! | TTAAACTCTAAAATATCATT+TGG | - | chr7_4:20491510-20491529 | None:intergenic | 15.0% |
| !! | AATATTACAATACTTAAAAC+AGG | - | chr7_4:20491596-20491615 | None:intergenic | 15.0% |
| !!! | TATAAGGCATTGTTAAAATT+TGG | - | chr7_4:20491001-20491020 | None:intergenic | 20.0% |
| !! | TACTATGAAATCAATGATTA+TGG | + | chr7_4:20491050-20491069 | Msa1144450:CDS | 20.0% |
| !!! | TATAAGGCATTGTTAAAATT+TGG | - | chr7_4:20491001-20491020 | None:intergenic | 20.0% |
| !! | TACTATGAAATCAATGATTA+TGG | + | chr7_4:20491050-20491069 | Msa1144450:CDS | 20.0% |
| ! | ATGCCTAATATTGATGAATT+TGG | + | chr7_4:20491209-20491228 | Msa1144450:CDS | 25.0% |
| ! | TGCCTAATATTGATGAATTT+GGG | + | chr7_4:20491210-20491229 | Msa1144450:CDS | 25.0% |
| !! | ACAACTGTCTTATATTTTTC+TGG | + | chr7_4:20491252-20491271 | Msa1144450:intron | 25.0% |
| ! | AAAAAAGATCCAAAGTCATT+TGG | - | chr7_4:20491333-20491352 | None:intergenic | 25.0% |
| ! | ACACAAACTATTGTTAAGAT+AGG | + | chr7_4:20491444-20491463 | Msa1144450:CDS | 25.0% |
| ! | ATGCCTAATATTGATGAATT+TGG | + | chr7_4:20491209-20491228 | Msa1144450:CDS | 25.0% |
| ! | TGCCTAATATTGATGAATTT+GGG | + | chr7_4:20491210-20491229 | Msa1144450:CDS | 25.0% |
| !! | ACAACTGTCTTATATTTTTC+TGG | + | chr7_4:20491252-20491271 | Msa1144450:intron | 25.0% |
| ! | AAAAAAGATCCAAAGTCATT+TGG | - | chr7_4:20491333-20491352 | None:intergenic | 25.0% |
| ! | ACACAAACTATTGTTAAGAT+AGG | + | chr7_4:20491444-20491463 | Msa1144450:CDS | 25.0% |
| CATTATGAATGAAAGGAAGA+TGG | - | chr7_4:20490747-20490766 | None:intergenic | 30.0% | |
| CATCTTCCTTTCATTCATAA+TGG | + | chr7_4:20490745-20490764 | Msa1144450:exon | 30.0% | |
| TTGCATACAGTGATGAAATA+AGG | - | chr7_4:20490782-20490801 | None:intergenic | 30.0% | |
| CACTGTATGCAAAAAAAATC+AGG | + | chr7_4:20490790-20490809 | Msa1144450:CDS | 30.0% | |
| AAGAATTCCGCAATGAAAAT+TGG | - | chr7_4:20490912-20490931 | None:intergenic | 30.0% | |
| GGTTAAATACAACAATGTGT+TGG | - | chr7_4:20490980-20490999 | None:intergenic | 30.0% | |
| ! | TGCCTTATATTACCTTTTGT+TGG | + | chr7_4:20491012-20491031 | Msa1144450:CDS | 30.0% |
| ! | GCCTTATATTACCTTTTGTT+GGG | + | chr7_4:20491013-20491032 | Msa1144450:CDS | 30.0% |
| TCCCAACAAAAGGTAATATA+AGG | - | chr7_4:20491017-20491036 | None:intergenic | 30.0% | |
| GAAATTCGTTTGTTTGGATT+GGG | - | chr7_4:20491133-20491152 | None:intergenic | 30.0% | |
| GCATAAAAACCACAAAAGTT+GGG | - | chr7_4:20491193-20491212 | None:intergenic | 30.0% | |
| GTCCCAAATTCATCAATATT+AGG | - | chr7_4:20491215-20491234 | None:intergenic | 30.0% | |
| ! | TGATGAATTTGGGACAAAAT+TGG | + | chr7_4:20491220-20491239 | Msa1144450:CDS | 30.0% |
| !!! | GACTTTGGATCTTTTTTGAA+AGG | + | chr7_4:20491336-20491355 | Msa1144450:CDS | 30.0% |
| GTTTAAGTGTGACTCAATTA+TGG | + | chr7_4:20491524-20491543 | Msa1144450:CDS | 30.0% | |
| CATTATGAATGAAAGGAAGA+TGG | - | chr7_4:20490747-20490766 | None:intergenic | 30.0% | |
| CATCTTCCTTTCATTCATAA+TGG | + | chr7_4:20490745-20490764 | Msa1144450:exon | 30.0% | |
| TTGCATACAGTGATGAAATA+AGG | - | chr7_4:20490782-20490801 | None:intergenic | 30.0% | |
| CACTGTATGCAAAAAAAATC+AGG | + | chr7_4:20490790-20490809 | Msa1144450:CDS | 30.0% | |
| AAGAATTCCGCAATGAAAAT+TGG | - | chr7_4:20490912-20490931 | None:intergenic | 30.0% | |
| GGTTAAATACAACAATGTGT+TGG | - | chr7_4:20490980-20490999 | None:intergenic | 30.0% | |
| ! | TGCCTTATATTACCTTTTGT+TGG | + | chr7_4:20491012-20491031 | Msa1144450:CDS | 30.0% |
| ! | GCCTTATATTACCTTTTGTT+GGG | + | chr7_4:20491013-20491032 | Msa1144450:CDS | 30.0% |
| TCCCAACAAAAGGTAATATA+AGG | - | chr7_4:20491017-20491036 | None:intergenic | 30.0% | |
| GAAATTCGTTTGTTTGGATT+GGG | - | chr7_4:20491133-20491152 | None:intergenic | 30.0% | |
| GCATAAAAACCACAAAAGTT+GGG | - | chr7_4:20491193-20491212 | None:intergenic | 30.0% | |
| GTCCCAAATTCATCAATATT+AGG | - | chr7_4:20491215-20491234 | None:intergenic | 30.0% | |
| ! | TGATGAATTTGGGACAAAAT+TGG | + | chr7_4:20491220-20491239 | Msa1144450:CDS | 30.0% |
| !!! | GACTTTGGATCTTTTTTGAA+AGG | + | chr7_4:20491336-20491355 | Msa1144450:CDS | 30.0% |
| GTTTAAGTGTGACTCAATTA+TGG | + | chr7_4:20491524-20491543 | Msa1144450:CDS | 30.0% | |
| TGGAGTCCATTATGAATGAA+AGG | - | chr7_4:20490754-20490773 | None:intergenic | 35.0% | |
| AGTGATGAAATAAGGTCTGT+TGG | - | chr7_4:20490774-20490793 | None:intergenic | 35.0% | |
| ! | GCTTGATCCAATTTTCATTG+CGG | + | chr7_4:20490902-20490921 | Msa1144450:CDS | 35.0% |
| TCAATGAACTGGATGAACAA+TGG | + | chr7_4:20490931-20490950 | Msa1144450:CDS | 35.0% | |
| CAATGAACTGGATGAACAAT+GGG | + | chr7_4:20490932-20490951 | Msa1144450:CDS | 35.0% | |
| ! | TACCTTTTGTTGGGAATCAT+TGG | + | chr7_4:20491022-20491041 | Msa1144450:CDS | 35.0% |
| ! | ACCTTTTGTTGGGAATCATT+GGG | + | chr7_4:20491023-20491042 | Msa1144450:CDS | 35.0% |
| GGAAATTCGTTTGTTTGGAT+TGG | - | chr7_4:20491134-20491153 | None:intergenic | 35.0% | |
| TCCAAACAAACGAATTTCCA+CGG | + | chr7_4:20491135-20491154 | Msa1144450:CDS | 35.0% | |
| TGCGAGTTATAGATGTAGTT+TGG | - | chr7_4:20491169-20491188 | None:intergenic | 35.0% | |
| GGCATAAAAACCACAAAAGT+TGG | - | chr7_4:20491194-20491213 | None:intergenic | 35.0% | |
| GATCTGCAAGAAGGAAAAAA+TGG | - | chr7_4:20491307-20491326 | None:intergenic | 35.0% | |
| ATTTGGTAAGATCTGCAAGA+AGG | - | chr7_4:20491316-20491335 | None:intergenic | 35.0% | |
| CAGATCTTACCAAATGACTT+TGG | + | chr7_4:20491321-20491340 | Msa1144450:intron | 35.0% | |
| CATTCTCATTTACGATTGTG+TGG | + | chr7_4:20491366-20491385 | Msa1144450:CDS | 35.0% | |
| TGGAGTCCATTATGAATGAA+AGG | - | chr7_4:20490754-20490773 | None:intergenic | 35.0% | |
| AGTGATGAAATAAGGTCTGT+TGG | - | chr7_4:20490774-20490793 | None:intergenic | 35.0% | |
| ! | GCTTGATCCAATTTTCATTG+CGG | + | chr7_4:20490902-20490921 | Msa1144450:CDS | 35.0% |
| TCAATGAACTGGATGAACAA+TGG | + | chr7_4:20490931-20490950 | Msa1144450:CDS | 35.0% | |
| CAATGAACTGGATGAACAAT+GGG | + | chr7_4:20490932-20490951 | Msa1144450:CDS | 35.0% | |
| ! | TACCTTTTGTTGGGAATCAT+TGG | + | chr7_4:20491022-20491041 | Msa1144450:CDS | 35.0% |
| ! | ACCTTTTGTTGGGAATCATT+GGG | + | chr7_4:20491023-20491042 | Msa1144450:CDS | 35.0% |
| GGAAATTCGTTTGTTTGGAT+TGG | - | chr7_4:20491134-20491153 | None:intergenic | 35.0% | |
| TCCAAACAAACGAATTTCCA+CGG | + | chr7_4:20491135-20491154 | Msa1144450:CDS | 35.0% | |
| TGCGAGTTATAGATGTAGTT+TGG | - | chr7_4:20491169-20491188 | None:intergenic | 35.0% | |
| GGCATAAAAACCACAAAAGT+TGG | - | chr7_4:20491194-20491213 | None:intergenic | 35.0% | |
| GATCTGCAAGAAGGAAAAAA+TGG | - | chr7_4:20491307-20491326 | None:intergenic | 35.0% | |
| ATTTGGTAAGATCTGCAAGA+AGG | - | chr7_4:20491316-20491335 | None:intergenic | 35.0% | |
| CAGATCTTACCAAATGACTT+TGG | + | chr7_4:20491321-20491340 | Msa1144450:intron | 35.0% | |
| CATTCTCATTTACGATTGTG+TGG | + | chr7_4:20491366-20491385 | Msa1144450:CDS | 35.0% | |
| TGCGGAATTCTTCAATGAAC+TGG | + | chr7_4:20490920-20490939 | Msa1144450:CDS | 40.0% | |
| TCCCAATGATTCCCAACAAA+AGG | - | chr7_4:20491027-20491046 | None:intergenic | 40.0% | |
| TTCCACATACACGTGTTTCA+TGG | + | chr7_4:20491107-20491126 | Msa1144450:CDS | 40.0% | |
| ACCGTGGAAATTCGTTTGTT+TGG | - | chr7_4:20491139-20491158 | None:intergenic | 40.0% | |
| TTGTTAAGATAGGACGTAGC+TGG | + | chr7_4:20491454-20491473 | Msa1144450:CDS | 40.0% | |
| TGCGGAATTCTTCAATGAAC+TGG | + | chr7_4:20490920-20490939 | Msa1144450:CDS | 40.0% | |
| TCCCAATGATTCCCAACAAA+AGG | - | chr7_4:20491027-20491046 | None:intergenic | 40.0% | |
| TTCCACATACACGTGTTTCA+TGG | + | chr7_4:20491107-20491126 | Msa1144450:CDS | 40.0% | |
| ACCGTGGAAATTCGTTTGTT+TGG | - | chr7_4:20491139-20491158 | None:intergenic | 40.0% | |
| TTGTTAAGATAGGACGTAGC+TGG | + | chr7_4:20491454-20491473 | Msa1144450:CDS | 40.0% | |
| GTAGTTTGGCTATGATACCG+TGG | - | chr7_4:20491155-20491174 | None:intergenic | 45.0% | |
| ! | AACTCGCAACCCAACTTTTG+TGG | + | chr7_4:20491181-20491200 | Msa1144450:CDS | 45.0% |
| GTAGTTTGGCTATGATACCG+TGG | - | chr7_4:20491155-20491174 | None:intergenic | 45.0% | |
| ! | AACTCGCAACCCAACTTTTG+TGG | + | chr7_4:20491181-20491200 | Msa1144450:CDS | 45.0% |
| GATCAAGCTCAGCACTCATC+TGG | - | chr7_4:20490890-20490909 | None:intergenic | 50.0% | |
| GGCCATGAAACACGTGTATG+TGG | - | chr7_4:20491112-20491131 | None:intergenic | 50.0% | |
| GATCAAGCTCAGCACTCATC+TGG | - | chr7_4:20490890-20490909 | None:intergenic | 50.0% | |
| GGCCATGAAACACGTGTATG+TGG | - | chr7_4:20491112-20491131 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 20490727 | 20491661 | 20490727 | ID=Msa1144450;Name=Msa1144450 |
| chr7_4 | mRNA | 20490727 | 20491661 | 20490727 | ID=Msa1144450-mRNA-1;Parent=Msa1144450;Name=Msa1144450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=37|1|1|1|0|0|3|59|225 |
| chr7_4 | exon | 20490727 | 20490811 | 20490727 | ID=Msa1144450-mRNA-1:exon:4917;Parent=Msa1144450-mRNA-1 |
| chr7_4 | exon | 20490891 | 20491241 | 20490891 | ID=Msa1144450-mRNA-1:exon:4918;Parent=Msa1144450-mRNA-1 |
| chr7_4 | exon | 20491324 | 20491661 | 20491324 | ID=Msa1144450-mRNA-1:exon:4919;Parent=Msa1144450-mRNA-1 |
| chr7_4 | five_prime_UTR | 20490727 | 20490763 | 20490727 | ID=Msa1144450-mRNA-1:five_prime_utr;Parent=Msa1144450-mRNA-1 |
| chr7_4 | CDS | 20490764 | 20490811 | 20490764 | ID=Msa1144450-mRNA-1:cds;Parent=Msa1144450-mRNA-1 |
| chr7_4 | CDS | 20490891 | 20491241 | 20490891 | ID=Msa1144450-mRNA-1:cds;Parent=Msa1144450-mRNA-1 |
| chr7_4 | CDS | 20491324 | 20491602 | 20491324 | ID=Msa1144450-mRNA-1:cds;Parent=Msa1144450-mRNA-1 |
| chr7_4 | three_prime_UTR | 20491603 | 20491661 | 20491603 | ID=Msa1144450-mRNA-1:three_prime_utr;Parent=Msa1144450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
