Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980200 | XP_024639113.2 | 47.368 | 133 | 68 | 1 | 29 | 161 | 5 | 135 | 2.85e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980200 | A0A396HMX6 | 46.099 | 141 | 74 | 1 | 21 | 161 | 21 | 159 | 2.95e-31 | 123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0980200 | 0.834044 | 3.763481e-56 | -8.615850e-47 |
| Msa0001940 | Msa0980200 | 0.804620 | 1.979756e-49 | -8.615850e-47 |
| Msa0009180 | Msa0980200 | 0.803688 | 3.094020e-49 | -8.615850e-47 |
| Msa0024550 | Msa0980200 | 0.838717 | 2.436625e-57 | -8.615850e-47 |
| Msa0044090 | Msa0980200 | 0.807773 | 4.291565e-50 | -8.615850e-47 |
| Msa0089750 | Msa0980200 | 0.825860 | 3.722479e-54 | -8.615850e-47 |
| Msa0103770 | Msa0980200 | 0.802154 | 6.418707e-49 | -8.615850e-47 |
| Msa0108410 | Msa0980200 | 0.814856 | 1.244775e-51 | -8.615850e-47 |
| Msa0120400 | Msa0980200 | 0.836220 | 1.063189e-56 | -8.615850e-47 |
| Msa0624420 | Msa0980200 | 0.800646 | 1.307052e-48 | -8.615850e-47 |
| Msa0626510 | Msa0980200 | 0.807210 | 5.649506e-50 | -8.615850e-47 |
| Msa0680660 | Msa0980200 | 0.803438 | 3.485376e-49 | -8.615850e-47 |
| Msa0681250 | Msa0980200 | 0.811466 | 6.903602e-51 | -8.615850e-47 |
| Msa0707250 | Msa0980200 | 0.802805 | 4.711837e-49 | -8.615850e-47 |
| Msa0720690 | Msa0980200 | 0.803267 | 3.782440e-49 | -8.615850e-47 |
| Msa0729800 | Msa0980200 | 0.803272 | 3.773668e-49 | -8.615850e-47 |
| Msa0731940 | Msa0980200 | 0.820034 | 8.488144e-53 | -8.615850e-47 |
| Msa0756460 | Msa0980200 | 0.828236 | 1.005892e-54 | -8.615850e-47 |
| Msa0760130 | Msa0980200 | 0.814751 | 1.313231e-51 | -8.615850e-47 |
| Msa0784290 | Msa0980200 | 0.807266 | 5.496580e-50 | -8.615850e-47 |
| Msa0810220 | Msa0980200 | 0.804268 | 2.344045e-49 | -8.615850e-47 |
| Msa0829330 | Msa0980200 | 0.809143 | 2.188691e-50 | -8.615850e-47 |
| Msa0832340 | Msa0980200 | 0.847510 | 1.105021e-59 | -8.615850e-47 |
| Msa0131770 | Msa0980200 | 0.817154 | 3.820462e-52 | -8.615850e-47 |
| Msa0164330 | Msa0980200 | 0.818029 | 2.426282e-52 | -8.615850e-47 |
| Msa0178740 | Msa0980200 | 0.811695 | 6.154987e-51 | -8.615850e-47 |
| Msa0189930 | Msa0980200 | -0.808082 | 3.688424e-50 | -8.615850e-47 |
| Msa0195100 | Msa0980200 | 0.800728 | 1.257625e-48 | -8.615850e-47 |
| Msa0212990 | Msa0980200 | 0.808474 | 3.043091e-50 | -8.615850e-47 |
| Msa0218810 | Msa0980200 | 0.800644 | 1.308560e-48 | -8.615850e-47 |
| Msa0225100 | Msa0980200 | 0.811354 | 7.302726e-51 | -8.615850e-47 |
| Msa0230320 | Msa0980200 | 0.800240 | 1.581090e-48 | -8.615850e-47 |
| Msa0364340 | Msa0980200 | 0.843221 | 1.600943e-58 | -8.615850e-47 |
| Msa0367870 | Msa0980200 | 0.827079 | 1.907163e-54 | -8.615850e-47 |
| Msa0378720 | Msa0980200 | 0.804017 | 2.642945e-49 | -8.615850e-47 |
| Msa0381610 | Msa0980200 | -0.801551 | 8.534647e-49 | -8.615850e-47 |
| Msa0385840 | Msa0980200 | 0.813977 | 1.947954e-51 | -8.615850e-47 |
| Msa0388340 | Msa0980200 | 0.824978 | 6.021115e-54 | -8.615850e-47 |
| Msa0389770 | Msa0980200 | 0.802972 | 4.352886e-49 | -8.615850e-47 |
| Msa0403640 | Msa0980200 | 0.829444 | 5.129594e-55 | -8.615850e-47 |
| Msa0425170 | Msa0980200 | 0.807978 | 3.882026e-50 | -8.615850e-47 |
| Msa0427100 | Msa0980200 | 0.801254 | 9.821671e-49 | -8.615850e-47 |
| Msa0427120 | Msa0980200 | 0.810853 | 9.374498e-51 | -8.615850e-47 |
| Msa0440750 | Msa0980200 | 0.805415 | 1.349759e-49 | -8.615850e-47 |
| Msa0450400 | Msa0980200 | -0.804022 | 2.637355e-49 | -8.615850e-47 |
| Msa0452710 | Msa0980200 | 0.806778 | 6.974113e-50 | -8.615850e-47 |
| Msa0460590 | Msa0980200 | 0.817747 | 2.808641e-52 | -8.615850e-47 |
| Msa0464680 | Msa0980200 | 0.815515 | 8.888790e-52 | -8.615850e-47 |
| Msa0980200 | Msa0997370 | 0.822946 | 1.803982e-53 | -8.615850e-47 |
| Msa0980200 | Msa1002850 | 0.803008 | 4.278972e-49 | -8.615850e-47 |
| Msa0980200 | Msa1016320 | 0.805890 | 1.073043e-49 | -8.615850e-47 |
| Msa0980200 | Msa1017750 | 0.804627 | 1.972737e-49 | -8.615850e-47 |
| Msa0980200 | Msa1019150 | 0.803355 | 3.626192e-49 | -8.615850e-47 |
| Msa0980200 | Msa1029810 | 0.803735 | 3.025260e-49 | -8.615850e-47 |
| Msa0980200 | Msa1036610 | 0.810765 | 9.795971e-51 | -8.615850e-47 |
| Msa0980200 | Msa1039020 | 0.819016 | 1.449105e-52 | -8.615850e-47 |
| Msa0980200 | Msa1043370 | 0.806299 | 8.798845e-50 | -8.615850e-47 |
| Msa0980200 | Msa1060540 | 0.811897 | 5.564532e-51 | -8.615850e-47 |
| Msa0980200 | Msa1065570 | 0.802520 | 5.396784e-49 | -8.615850e-47 |
| Msa0980200 | Msa1075540 | 0.800049 | 1.729437e-48 | -8.615850e-47 |
| Msa0980200 | Msa1083840 | 0.810900 | 9.158702e-51 | -8.615850e-47 |
| Msa0980200 | Msa1101090 | 0.818722 | 1.689654e-52 | -8.615850e-47 |
| Msa0980200 | Msa1121200 | 0.806534 | 7.851338e-50 | -8.615850e-47 |
| Msa0980200 | Msa1121480 | 0.838713 | 2.442603e-57 | -8.615850e-47 |
| Msa0980200 | Msa1121490 | 0.850966 | 1.206390e-60 | -8.615850e-47 |
| Msa0980200 | Msa1137570 | 0.818856 | 1.575870e-52 | -8.615850e-47 |
| Msa0980200 | Msa1142670 | 0.815053 | 1.125820e-51 | -8.615850e-47 |
| Msa0980200 | Msa1144450 | 0.941324 | 5.068883e-101 | -8.615850e-47 |
| Msa0980200 | Msa1147740 | 0.823110 | 1.652494e-53 | -8.615850e-47 |
| Msa0980200 | Msa1155170 | -0.815546 | 8.745625e-52 | -8.615850e-47 |
| Msa0980200 | Msa1162780 | 0.804634 | 1.966257e-49 | -8.615850e-47 |
| Msa0980200 | Msa1186640 | 0.823864 | 1.101135e-53 | -8.615850e-47 |
| Msa0980200 | Msa1225860 | -0.816321 | 5.873600e-52 | -8.615850e-47 |
| Msa0980200 | Msa1232740 | 0.802866 | 4.578944e-49 | -8.615850e-47 |
| Msa0980200 | Msa1236410 | 0.812052 | 5.147431e-51 | -8.615850e-47 |
| Msa0980200 | Msa1238820 | 0.830573 | 2.721850e-55 | -8.615850e-47 |
| Msa0980200 | Msa1243490 | 0.806517 | 7.914925e-50 | -8.615850e-47 |
| Msa0980200 | Msa1248310 | 0.806329 | 8.673796e-50 | -8.615850e-47 |
| Msa0980200 | Msa1248370 | 0.826236 | 3.030449e-54 | -8.615850e-47 |
| Msa0980200 | Msa1271130 | 0.801536 | 8.598695e-49 | -8.615850e-47 |
| Msa0980200 | Msa1285550 | 0.823683 | 1.213908e-53 | -8.615850e-47 |
| Msa0980200 | Msa1286800 | 0.826593 | 2.492042e-54 | -8.615850e-47 |
| Msa0980200 | Msa1288560 | 0.801884 | 7.293867e-49 | -8.615850e-47 |
| Msa0980200 | Msa1297230 | 0.812421 | 4.276117e-51 | -8.615850e-47 |
| Msa0980200 | Msa1313320 | 0.802832 | 4.652679e-49 | -8.615850e-47 |
| Msa0980200 | Msa1325410 | -0.818239 | 2.174581e-52 | -8.615850e-47 |
| Msa0980200 | Msa1330420 | 0.812477 | 4.156436e-51 | -8.615850e-47 |
| Msa0980200 | Msa1333480 | 0.801276 | 9.720941e-49 | -8.615850e-47 |
| Msa0980200 | Msa1343430 | 0.806353 | 8.571220e-50 | -8.615850e-47 |
| Msa0980200 | Msa1355450 | 0.812674 | 3.765448e-51 | -8.615850e-47 |
| Msa0980200 | Msa1366340 | 0.813136 | 2.981709e-51 | -8.615850e-47 |
| Msa0980200 | Msa1366810 | 0.802617 | 5.152089e-49 | -8.615850e-47 |
| Msa0980200 | Msa1382400 | 0.806091 | 9.733881e-50 | -8.615850e-47 |
| Msa0980200 | Msa1390690 | 0.802500 | 5.446287e-49 | -8.615850e-47 |
| Msa0980200 | Msa1390700 | 0.814086 | 1.842728e-51 | -8.615850e-47 |
| Msa0980200 | Msa1392910 | 0.806082 | 9.774190e-50 | -8.615850e-47 |
| Msa0980200 | Msa1423780 | 0.811776 | 5.911015e-51 | -8.615850e-47 |
| Msa0980200 | Msa1444510 | 0.802312 | 5.954581e-49 | -8.615850e-47 |
| Msa0980200 | Msa1452710 | 0.809929 | 1.484036e-50 | -8.615850e-47 |
| Msa0980200 | Msa1466540 | 0.808991 | 2.358725e-50 | -8.615850e-47 |
| Msa0244640 | Msa0980200 | 0.833175 | 6.201741e-56 | -8.615850e-47 |
| Msa0266180 | Msa0980200 | 0.812608 | 3.891607e-51 | -8.615850e-47 |
| Msa0283330 | Msa0980200 | 0.817681 | 2.906804e-52 | -8.615850e-47 |
| Msa0287740 | Msa0980200 | 0.806133 | 9.537092e-50 | -8.615850e-47 |
| Msa0290870 | Msa0980200 | 0.845451 | 4.028082e-59 | -8.615850e-47 |
| Msa0308630 | Msa0980200 | 0.816810 | 4.563858e-52 | -8.615850e-47 |
| Msa0317000 | Msa0980200 | 0.801782 | 7.653290e-49 | -8.615850e-47 |
| Msa0321620 | Msa0980200 | 0.810096 | 1.365964e-50 | -8.615850e-47 |
| Msa0330340 | Msa0980200 | 0.812798 | 3.536778e-51 | -8.615850e-47 |
| Msa0336320 | Msa0980200 | 0.809569 | 1.773720e-50 | -8.615850e-47 |
| Msa0342750 | Msa0980200 | 0.823509 | 1.333198e-53 | -8.615850e-47 |
| Msa0357340 | Msa0980200 | 0.815128 | 1.083518e-51 | -8.615850e-47 |
| Msa0556430 | Msa0980200 | 0.933003 | 3.633848e-95 | -8.615850e-47 |
| Msa0583360 | Msa0980200 | -0.811507 | 6.762372e-51 | -8.615850e-47 |
| Msa0600700 | Msa0980200 | 0.830727 | 2.495730e-55 | -8.615850e-47 |
| Msa0601540 | Msa0980200 | 0.803892 | 2.806485e-49 | -8.615850e-47 |
| Msa0844490 | Msa0980200 | 0.841554 | 4.428028e-58 | -8.615850e-47 |
| Msa0870610 | Msa0980200 | 0.816356 | 5.769663e-52 | -8.615850e-47 |
| Msa0875290 | Msa0980200 | 0.825069 | 5.729633e-54 | -8.615850e-47 |
| Msa0888130 | Msa0980200 | 0.805637 | 1.212415e-49 | -8.615850e-47 |
| Msa0899430 | Msa0980200 | 0.804147 | 2.483816e-49 | -8.615850e-47 |
| Msa0899450 | Msa0980200 | 0.803104 | 4.086973e-49 | -8.615850e-47 |
| Msa0914270 | Msa0980200 | 0.815232 | 1.027023e-51 | -8.615850e-47 |
| Msa0933760 | Msa0980200 | 0.802206 | 6.262349e-49 | -8.615850e-47 |
| Msa0958550 | Msa0980200 | 0.806282 | 8.874124e-50 | -8.615850e-47 |
| Msa0967380 | Msa0980200 | 0.845758 | 3.325940e-59 | -8.615850e-47 |
| Msa0967870 | Msa0980200 | 0.805862 | 1.087634e-49 | -8.615850e-47 |
| Msa0974080 | Msa0980200 | 0.805808 | 1.116498e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980200 | MtrunA17_Chr5g0393501 | 46.099 | 141 | 74 | 1 | 21 | 161 | 21 | 159 | 5.69e-35 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCTAATATTGATGAATT+TGG | 0.071532 | 6_4:-18172562 | Msa0980200:CDS |
| TATAAGGCATTGTTAAAATT+TGG | 0.194239 | 6_4:+18172773 | None:intergenic |
| AAGAATTCCGCAATGAAAAT+TGG | 0.202897 | 6_4:+18172862 | None:intergenic |
| TGATGAATTTGGGACAAAAT+TGG | 0.234698 | 6_4:-18172551 | Msa0980200:CDS |
| TACTATGAAATCAATGATTA+TGG | 0.240311 | 6_4:-18172721 | Msa0980200:CDS |
| CATCTTCCTTTCATTCATAA+TGG | 0.274505 | 6_4:-18173026 | Msa0980200:CDS |
| GTCCCAAATTCATCAATATT+AGG | 0.280924 | 6_4:+18172559 | None:intergenic |
| TGCCTAATATTGATGAATTT+GGG | 0.308974 | 6_4:-18172561 | Msa0980200:CDS |
| CTAAATATGTAAAAGATATT+AGG | 0.309400 | 6_4:+18172698 | None:intergenic |
| ACCGTGGAAATTCGTTTGTT+TGG | 0.318850 | 6_4:+18172635 | None:intergenic |
| TCCCAACAAAAGGTAATATA+AGG | 0.319342 | 6_4:+18172757 | None:intergenic |
| TTGCATACAGTGATGAAATA+AGG | 0.320941 | 6_4:+18172992 | None:intergenic |
| GGAAATTCGTTTGTTTGGAT+TGG | 0.329638 | 6_4:+18172640 | None:intergenic |
| GAAATTCGTTTGTTTGGATT+GGG | 0.339538 | 6_4:+18172641 | None:intergenic |
| TGCGGAATTCTTCAATGAAC+TGG | 0.345003 | 6_4:-18172851 | Msa0980200:CDS |
| TTCCACATACACGTGTTTCA+TGG | 0.348799 | 6_4:-18172664 | Msa0980200:CDS |
| CAGATCTTACCAAATGACTT+TGG | 0.384038 | 6_4:-18172450 | Msa0980200:exon |
| TGCGAGTTATAGATGTAGTT+TGG | 0.385150 | 6_4:+18172605 | None:intergenic |
| CAATGAACTGGATGAACAAT+GGG | 0.420513 | 6_4:-18172839 | Msa0980200:CDS |
| ACACAAACTATTGTTAAGAT+AGG | 0.424067 | 6_4:-18172327 | Msa0980200:three_prime_UTR |
| TCCCAATGATTCCCAACAAA+AGG | 0.467567 | 6_4:+18172747 | None:intergenic |
| CATTCTCATTTACGATTGTG+TGG | 0.506907 | 6_4:-18172405 | Msa0980200:three_prime_UTR |
| AGTGATGAAATAAGGTCTGT+TGG | 0.517513 | 6_4:+18173000 | None:intergenic |
| CATTATGAATGAAAGGAAGA+TGG | 0.523264 | 6_4:+18173027 | None:intergenic |
| TTGTTAAGATAGGACGTAGC+TGG | 0.529092 | 6_4:-18172317 | Msa0980200:three_prime_UTR |
| GGTTAAATACAACAATGTGT+TGG | 0.550805 | 6_4:+18172794 | None:intergenic |
| TCAATGAACTGGATGAACAA+TGG | 0.558244 | 6_4:-18172840 | Msa0980200:CDS |
| GGCCATGAAACACGTGTATG+TGG | 0.560867 | 6_4:+18172662 | None:intergenic |
| TGGAGTCCATTATGAATGAA+AGG | 0.569698 | 6_4:+18173020 | None:intergenic |
| TCCAAACAAACGAATTTCCA+CGG | 0.596587 | 6_4:-18172636 | Msa0980200:CDS |
| ATTTGGTAAGATCTGCAAGA+AGG | 0.603404 | 6_4:+18172458 | None:intergenic |
| GTGTTGCAAAGATTTACTTG+AGG | 0.660916 | 6_4:+18173060 | None:intergenic |
| GTAGTTTGGCTATGATACCG+TGG | 0.697972 | 6_4:+18172619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATATGTAAAAGATATT+AGG | + | chr6_4:18172689-18172708 | None:intergenic | 15.0% |
| !!! | CTAATATCTTTTACATATTT+AGG | - | chr6_4:18172687-18172706 | Msa0980200:CDS | 15.0% |
| !! | CTAAATATGTAAAAGATATT+AGG | + | chr6_4:18172689-18172708 | None:intergenic | 15.0% |
| !!! | CTAATATCTTTTACATATTT+AGG | - | chr6_4:18172687-18172706 | Msa0980200:CDS | 15.0% |
| !!! | TATAAGGCATTGTTAAAATT+TGG | + | chr6_4:18172614-18172633 | None:intergenic | 20.0% |
| !! | TACTATGAAATCAATGATTA+TGG | - | chr6_4:18172663-18172682 | Msa0980200:CDS | 20.0% |
| !!! | TATAAGGCATTGTTAAAATT+TGG | + | chr6_4:18172614-18172633 | None:intergenic | 20.0% |
| !! | TACTATGAAATCAATGATTA+TGG | - | chr6_4:18172663-18172682 | Msa0980200:CDS | 20.0% |
| ! | ATGCCTAATATTGATGAATT+TGG | - | chr6_4:18172822-18172841 | Msa0980200:CDS | 25.0% |
| ! | TGCCTAATATTGATGAATTT+GGG | - | chr6_4:18172823-18172842 | Msa0980200:CDS | 25.0% |
| !! | ACAACTGTCTTATATTTTTC+TGG | - | chr6_4:18172865-18172884 | Msa0980200:CDS | 25.0% |
| ! | AAAAAAGATCCAAAGTCATT+TGG | + | chr6_4:18172946-18172965 | None:intergenic | 25.0% |
| ! | ACACAAACTATTGTTAAGAT+AGG | - | chr6_4:18173057-18173076 | Msa0980200:CDS | 25.0% |
| ! | ATGCCTAATATTGATGAATT+TGG | - | chr6_4:18172822-18172841 | Msa0980200:CDS | 25.0% |
| ! | TGCCTAATATTGATGAATTT+GGG | - | chr6_4:18172823-18172842 | Msa0980200:CDS | 25.0% |
| !! | ACAACTGTCTTATATTTTTC+TGG | - | chr6_4:18172865-18172884 | Msa0980200:CDS | 25.0% |
| ! | AAAAAAGATCCAAAGTCATT+TGG | + | chr6_4:18172946-18172965 | None:intergenic | 25.0% |
| ! | ACACAAACTATTGTTAAGAT+AGG | - | chr6_4:18173057-18173076 | Msa0980200:CDS | 25.0% |
| CATTATGAATGAAAGGAAGA+TGG | + | chr6_4:18172360-18172379 | None:intergenic | 30.0% | |
| CATCTTCCTTTCATTCATAA+TGG | - | chr6_4:18172358-18172377 | Msa0980200:three_prime_UTR | 30.0% | |
| TTGCATACAGTGATGAAATA+AGG | + | chr6_4:18172395-18172414 | None:intergenic | 30.0% | |
| CACTGTATGCAAAAAAAATC+AGG | - | chr6_4:18172403-18172422 | Msa0980200:three_prime_UTR | 30.0% | |
| AAGAATTCCGCAATGAAAAT+TGG | + | chr6_4:18172525-18172544 | None:intergenic | 30.0% | |
| GGTTAAATACAACAATGTGT+TGG | + | chr6_4:18172593-18172612 | None:intergenic | 30.0% | |
| ! | TGCCTTATATTACCTTTTGT+TGG | - | chr6_4:18172625-18172644 | Msa0980200:CDS | 30.0% |
| ! | GCCTTATATTACCTTTTGTT+GGG | - | chr6_4:18172626-18172645 | Msa0980200:CDS | 30.0% |
| TCCCAACAAAAGGTAATATA+AGG | + | chr6_4:18172630-18172649 | None:intergenic | 30.0% | |
| GAAATTCGTTTGTTTGGATT+GGG | + | chr6_4:18172746-18172765 | None:intergenic | 30.0% | |
| GCATAAAAACCACAAAAGTT+GGG | + | chr6_4:18172806-18172825 | None:intergenic | 30.0% | |
| GTCCCAAATTCATCAATATT+AGG | + | chr6_4:18172828-18172847 | None:intergenic | 30.0% | |
| ! | TGATGAATTTGGGACAAAAT+TGG | - | chr6_4:18172833-18172852 | Msa0980200:CDS | 30.0% |
| !!! | GACTTTGGATCTTTTTTGAA+AGG | - | chr6_4:18172949-18172968 | Msa0980200:intron | 30.0% |
| CATTATGAATGAAAGGAAGA+TGG | + | chr6_4:18172360-18172379 | None:intergenic | 30.0% | |
| CATCTTCCTTTCATTCATAA+TGG | - | chr6_4:18172358-18172377 | Msa0980200:three_prime_UTR | 30.0% | |
| TTGCATACAGTGATGAAATA+AGG | + | chr6_4:18172395-18172414 | None:intergenic | 30.0% | |
| CACTGTATGCAAAAAAAATC+AGG | - | chr6_4:18172403-18172422 | Msa0980200:three_prime_UTR | 30.0% | |
| AAGAATTCCGCAATGAAAAT+TGG | + | chr6_4:18172525-18172544 | None:intergenic | 30.0% | |
| GGTTAAATACAACAATGTGT+TGG | + | chr6_4:18172593-18172612 | None:intergenic | 30.0% | |
| ! | TGCCTTATATTACCTTTTGT+TGG | - | chr6_4:18172625-18172644 | Msa0980200:CDS | 30.0% |
| ! | GCCTTATATTACCTTTTGTT+GGG | - | chr6_4:18172626-18172645 | Msa0980200:CDS | 30.0% |
| TCCCAACAAAAGGTAATATA+AGG | + | chr6_4:18172630-18172649 | None:intergenic | 30.0% | |
| GAAATTCGTTTGTTTGGATT+GGG | + | chr6_4:18172746-18172765 | None:intergenic | 30.0% | |
| GCATAAAAACCACAAAAGTT+GGG | + | chr6_4:18172806-18172825 | None:intergenic | 30.0% | |
| GTCCCAAATTCATCAATATT+AGG | + | chr6_4:18172828-18172847 | None:intergenic | 30.0% | |
| ! | TGATGAATTTGGGACAAAAT+TGG | - | chr6_4:18172833-18172852 | Msa0980200:CDS | 30.0% |
| !!! | GACTTTGGATCTTTTTTGAA+AGG | - | chr6_4:18172949-18172968 | Msa0980200:intron | 30.0% |
| GTGTTGCAAAGATTTACTTG+AGG | + | chr6_4:18172327-18172346 | None:intergenic | 35.0% | |
| TGGAGTCCATTATGAATGAA+AGG | + | chr6_4:18172367-18172386 | None:intergenic | 35.0% | |
| AGTGATGAAATAAGGTCTGT+TGG | + | chr6_4:18172387-18172406 | None:intergenic | 35.0% | |
| ! | GCTTGATCCAATTTTCATTG+CGG | - | chr6_4:18172515-18172534 | Msa0980200:CDS | 35.0% |
| TCAATGAACTGGATGAACAA+TGG | - | chr6_4:18172544-18172563 | Msa0980200:CDS | 35.0% | |
| CAATGAACTGGATGAACAAT+GGG | - | chr6_4:18172545-18172564 | Msa0980200:CDS | 35.0% | |
| ! | TACCTTTTGTTGGGAATCAT+TGG | - | chr6_4:18172635-18172654 | Msa0980200:CDS | 35.0% |
| ! | ACCTTTTGTTGGGAATCATT+GGG | - | chr6_4:18172636-18172655 | Msa0980200:CDS | 35.0% |
| GGAAATTCGTTTGTTTGGAT+TGG | + | chr6_4:18172747-18172766 | None:intergenic | 35.0% | |
| TCCAAACAAACGAATTTCCA+CGG | - | chr6_4:18172748-18172767 | Msa0980200:CDS | 35.0% | |
| TGCGAGTTATAGATGTAGTT+TGG | + | chr6_4:18172782-18172801 | None:intergenic | 35.0% | |
| GGCATAAAAACCACAAAAGT+TGG | + | chr6_4:18172807-18172826 | None:intergenic | 35.0% | |
| GATCTGCAAGAAGGAAAAAA+TGG | + | chr6_4:18172920-18172939 | None:intergenic | 35.0% | |
| ATTTGGTAAGATCTGCAAGA+AGG | + | chr6_4:18172929-18172948 | None:intergenic | 35.0% | |
| CAGATCTTACCAAATGACTT+TGG | - | chr6_4:18172934-18172953 | Msa0980200:intron | 35.0% | |
| CATTCTCATTTACGATTGTG+TGG | - | chr6_4:18172979-18172998 | Msa0980200:intron | 35.0% | |
| GTGTTGCAAAGATTTACTTG+AGG | + | chr6_4:18172327-18172346 | None:intergenic | 35.0% | |
| TGGAGTCCATTATGAATGAA+AGG | + | chr6_4:18172367-18172386 | None:intergenic | 35.0% | |
| AGTGATGAAATAAGGTCTGT+TGG | + | chr6_4:18172387-18172406 | None:intergenic | 35.0% | |
| ! | GCTTGATCCAATTTTCATTG+CGG | - | chr6_4:18172515-18172534 | Msa0980200:CDS | 35.0% |
| TCAATGAACTGGATGAACAA+TGG | - | chr6_4:18172544-18172563 | Msa0980200:CDS | 35.0% | |
| CAATGAACTGGATGAACAAT+GGG | - | chr6_4:18172545-18172564 | Msa0980200:CDS | 35.0% | |
| ! | TACCTTTTGTTGGGAATCAT+TGG | - | chr6_4:18172635-18172654 | Msa0980200:CDS | 35.0% |
| ! | ACCTTTTGTTGGGAATCATT+GGG | - | chr6_4:18172636-18172655 | Msa0980200:CDS | 35.0% |
| GGAAATTCGTTTGTTTGGAT+TGG | + | chr6_4:18172747-18172766 | None:intergenic | 35.0% | |
| TCCAAACAAACGAATTTCCA+CGG | - | chr6_4:18172748-18172767 | Msa0980200:CDS | 35.0% | |
| TGCGAGTTATAGATGTAGTT+TGG | + | chr6_4:18172782-18172801 | None:intergenic | 35.0% | |
| GGCATAAAAACCACAAAAGT+TGG | + | chr6_4:18172807-18172826 | None:intergenic | 35.0% | |
| GATCTGCAAGAAGGAAAAAA+TGG | + | chr6_4:18172920-18172939 | None:intergenic | 35.0% | |
| ATTTGGTAAGATCTGCAAGA+AGG | + | chr6_4:18172929-18172948 | None:intergenic | 35.0% | |
| CAGATCTTACCAAATGACTT+TGG | - | chr6_4:18172934-18172953 | Msa0980200:intron | 35.0% | |
| CATTCTCATTTACGATTGTG+TGG | - | chr6_4:18172979-18172998 | Msa0980200:intron | 35.0% | |
| TGCGGAATTCTTCAATGAAC+TGG | - | chr6_4:18172533-18172552 | Msa0980200:CDS | 40.0% | |
| TCCCAATGATTCCCAACAAA+AGG | + | chr6_4:18172640-18172659 | None:intergenic | 40.0% | |
| TTCCACATACACGTGTTTCA+TGG | - | chr6_4:18172720-18172739 | Msa0980200:CDS | 40.0% | |
| ACCGTGGAAATTCGTTTGTT+TGG | + | chr6_4:18172752-18172771 | None:intergenic | 40.0% | |
| TTGTTAAGATAGGACGTAGC+TGG | - | chr6_4:18173067-18173086 | Msa0980200:CDS | 40.0% | |
| TGCGGAATTCTTCAATGAAC+TGG | - | chr6_4:18172533-18172552 | Msa0980200:CDS | 40.0% | |
| TCCCAATGATTCCCAACAAA+AGG | + | chr6_4:18172640-18172659 | None:intergenic | 40.0% | |
| TTCCACATACACGTGTTTCA+TGG | - | chr6_4:18172720-18172739 | Msa0980200:CDS | 40.0% | |
| ACCGTGGAAATTCGTTTGTT+TGG | + | chr6_4:18172752-18172771 | None:intergenic | 40.0% | |
| TTGTTAAGATAGGACGTAGC+TGG | - | chr6_4:18173067-18173086 | Msa0980200:CDS | 40.0% | |
| GTAGTTTGGCTATGATACCG+TGG | + | chr6_4:18172768-18172787 | None:intergenic | 45.0% | |
| ! | AACTCGCAACCCAACTTTTG+TGG | - | chr6_4:18172794-18172813 | Msa0980200:CDS | 45.0% |
| GTAGTTTGGCTATGATACCG+TGG | + | chr6_4:18172768-18172787 | None:intergenic | 45.0% | |
| ! | AACTCGCAACCCAACTTTTG+TGG | - | chr6_4:18172794-18172813 | Msa0980200:CDS | 45.0% |
| GATCAAGCTCAGCACTCATC+TGG | + | chr6_4:18172503-18172522 | None:intergenic | 50.0% | |
| GGCCATGAAACACGTGTATG+TGG | + | chr6_4:18172725-18172744 | None:intergenic | 50.0% | |
| GATCAAGCTCAGCACTCATC+TGG | + | chr6_4:18172503-18172522 | None:intergenic | 50.0% | |
| GGCCATGAAACACGTGTATG+TGG | + | chr6_4:18172725-18172744 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 18172296 | 18173110 | 18172296 | ID=Msa0980200;Name=Msa0980200 |
| chr6_4 | mRNA | 18172296 | 18173110 | 18172296 | ID=Msa0980200-mRNA-1;Parent=Msa0980200;Name=Msa0980200-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|1|0.5|1|1|1|2|160|191 |
| chr6_4 | exon | 18172296 | 18172902 | 18172296 | ID=Msa0980200-mRNA-1:exon:5632;Parent=Msa0980200-mRNA-1 |
| chr6_4 | exon | 18172982 | 18173110 | 18172982 | ID=Msa0980200-mRNA-1:exon:5631;Parent=Msa0980200-mRNA-1 |
| chr6_4 | CDS | 18172982 | 18173110 | 18172982 | ID=Msa0980200-mRNA-1:cds;Parent=Msa0980200-mRNA-1 |
| chr6_4 | CDS | 18172456 | 18172902 | 18172456 | ID=Msa0980200-mRNA-1:cds;Parent=Msa0980200-mRNA-1 |
| chr6_4 | three_prime_UTR | 18172296 | 18172455 | 18172296 | ID=Msa0980200-mRNA-1:three_prime_utr;Parent=Msa0980200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
