AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967380 MtrunA17_Chr1g0178751 97.714 175 4 0 1 175 1 175 6.34e-128 356
Msa0967380 MtrunA17_Chr7g0266201 68.571 175 54 1 1 175 1 174 8.51e-91 262
Msa0967380 MtrunA17_Chr2g0321301 68.786 173 53 1 3 175 2 173 2.20e-88 256
Msa0967380 MtrunA17_Chr6g0472451 63.905 169 59 2 7 175 6 172 1.44e-80 236
Msa0967380 MtrunA17_Chr7g0252784 52.047 171 80 1 1 171 1 169 4.80e-65 197
Msa0967380 MtrunA17_Chr7g0214771 51.515 165 77 2 5 168 5 167 8.67e-61 186
Msa0967380 MtrunA17_Chr6g0461711 51.786 168 79 2 1 168 1 166 2.54e-60 185
Msa0967380 MtrunA17_Chr7g0214761 51.807 166 77 2 7 171 7 170 6.91e-60 184
Msa0967380 MtrunA17_Chr7g0252800 50.909 165 79 1 7 171 8 170 5.83e-57 176
Msa0967380 MtrunA17_Chr8g0392741 47.429 175 90 2 1 175 1 173 3.05e-54 169
Msa0967380 MtrunA17_Chr7g0252811 50.617 162 74 4 7 168 32 187 3.07e-52 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967380 AT5G03840.1 66.102 177 55 2 1 175 4 177 7.47e-87 253
Msa0967380 AT2G27550.1 63.636 176 62 2 1 175 1 175 3.50e-82 241
Msa0967380 AT5G62040.1 61.765 170 63 2 7 175 6 174 8.23e-75 222
Msa0967380 AT1G65480.1 53.333 165 75 2 7 171 7 169 1.20e-63 194
Msa0967380 AT1G65480.2 53.333 165 75 2 7 171 51 213 1.74e-63 195
Msa0967380 AT4G20370.1 52.727 165 76 2 7 171 7 169 2.26e-60 185
Msa0967380 AT1G18100.1 48.555 173 88 1 3 175 2 173 4.80e-56 174

Find 51 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTCCTAGCGCCTTCT+AGG 0.228115 6_3:+96890404 None:intergenic
TGCAAATGTTCTTTCATATA+AGG 0.264953 6_3:+96896355 None:intergenic
ACTTCAGATCCACTAATTCT+TGG 0.327033 6_3:-96896810 Msa0967380:CDS
TGCCCTTCTTGCATTGAAAT+AGG 0.331372 6_3:+96890433 None:intergenic
TGGATTCCTATATTAGGCTT+TGG 0.361496 6_3:+96890587 None:intergenic
ATGATAGACCCGGATGTTCC+TGG 0.362611 6_3:-96896388 Msa0967380:CDS
CTAATTCTTGGGAGAGTGAT+AGG 0.367036 6_3:-96896798 Msa0967380:CDS
TACCTGTGGATTCCTATATT+AGG 0.369722 6_3:+96890581 None:intergenic
ATCACTCTCCCAAGAATTAG+TGG 0.393204 6_3:+96896801 None:intergenic
GAAAGACCAAAGCCTAATAT+AGG 0.393718 6_3:-96890593 Msa0967380:CDS
TTGAAGTGATCCCTTGAAAA+AGG 0.403656 6_3:+96890506 None:intergenic
TTGAAATAGGCAGCAGCAAC+AGG 0.406751 6_3:+96890446 None:intergenic
GGAACAACAGATTCCACATT+TGG 0.406979 6_3:-96890771 Msa0967380:intron
GAAGGGCAACGGCTCCTAGA+AGG 0.416697 6_3:-96890418 Msa0967380:CDS
CTTCAGATCCACTAATTCTT+GGG 0.427576 6_3:-96896809 Msa0967380:CDS
TCACTTGGGCCAGGAACATC+CGG 0.429086 6_3:+96896379 None:intergenic
GTCCTATTCAAGCAAGAAAA+GGG 0.433490 6_3:-96890551 Msa0967380:CDS
TCCAATCTCAATCCTTGGCT+TGG 0.437325 6_3:+96896674 None:intergenic
AATGTGGAATCTGTTGTTCC+TGG 0.441986 6_3:+96890774 None:intergenic
TGTCCTATTCAAGCAAGAAA+AGG 0.447589 6_3:-96890552 Msa0967380:CDS
TCTCCTCCAATCTCAATCCT+TGG 0.456612 6_3:+96896669 None:intergenic
AATCTCAATCCTTGGCTTGG+TGG 0.460499 6_3:+96896677 None:intergenic
ACCAAGCCAAGGATTGAGAT+TGG 0.488676 6_3:-96896675 Msa0967380:CDS
AACAACAAAGAAATCTTCAA+TGG 0.490702 6_3:-96896726 Msa0967380:CDS
AGGATGGTGACAGACATTCC+AGG 0.505982 6_3:-96890792 Msa0967380:CDS
GGCTTGGTGGTAACTGAAGA+AGG 0.508899 6_3:+96896690 None:intergenic
ATATAAGGATCACTTGGGCC+AGG 0.520355 6_3:+96896370 None:intergenic
TCTTTCATATAAGGATCACT+TGG 0.526849 6_3:+96896364 None:intergenic
AATATAATACCAGTGTAAAG+AGG 0.529031 6_3:+96896634 None:intergenic
CTGCCTATTTCAATGCAAGA+AGG 0.532302 6_3:-96890436 Msa0967380:CDS
ATCCATAAACCTACCAAATG+TGG 0.542587 6_3:+96890758 None:intergenic
ATATGAAAGAACATTTGCAC+TGG 0.561788 6_3:-96896351 Msa0967380:intron
ATATAATACCAGTGTAAAGA+GGG 0.562460 6_3:+96896635 None:intergenic
AAGGATTGAGATTGGAGGAG+AGG 0.578470 6_3:-96896667 Msa0967380:CDS
CTTTCATATAAGGATCACTT+GGG 0.579211 6_3:+96896365 None:intergenic
GGTGGTAACTGAAGAAGGAA+AGG 0.582057 6_3:+96896695 None:intergenic
AAGCCAAGGATTGAGATTGG+AGG 0.587134 6_3:-96896672 Msa0967380:CDS
GTGGTAACTGAAGAAGGAAA+GGG 0.591441 6_3:+96896696 None:intergenic
AACGGCTCCTAGAAGGCGCT+AGG 0.601323 6_3:-96890411 None:intergenic
CTTCAGTTACCACCAAGCCA+AGG 0.603242 6_3:-96896686 Msa0967380:CDS
CACTTGGGCCAGGAACATCC+GGG 0.604987 6_3:+96896380 None:intergenic
AGCCTAATATAGGAATCCAC+AGG 0.609965 6_3:-96890583 Msa0967380:CDS
TCTGCAGGTCATGATAGACC+CGG 0.613879 6_3:-96896398 Msa0967380:intron
AGATTGGAGGAGAGGACATG+AGG 0.621266 6_3:-96896659 Msa0967380:CDS
TTTCAATGCAAGAAGGGCAA+CGG 0.623654 6_3:-96890429 Msa0967380:CDS
TCCTATTCAAGCAAGAAAAG+GGG 0.624185 6_3:-96890550 Msa0967380:CDS
TGCCTATTTCAATGCAAGAA+GGG 0.625343 6_3:-96890435 Msa0967380:CDS
TATTCAAGCAAGAAAAGGGG+AGG 0.658997 6_3:-96890547 Msa0967380:CDS
CATGAGGTCCCTCTTTACAC+TGG 0.660776 6_3:-96896643 Msa0967380:intron
ATAGGACAAACACATACCTG+TGG 0.703087 6_3:+96890567 None:intergenic
CAGCAGCAACAGGTACACCA+AGG 0.740949 6_3:+96890456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATATAAATATAT+AGG + chr6_3:96892858-96892877 None:intergenic 0.0%
!!! AATTTAATTTTTTTTATAAT+AGG + chr6_3:96893688-96893707 None:intergenic 0.0%
!!! ATAAATTCTTTTTTTTTTCA+TGG - chr6_3:96890633-96890652 Msa0967380:intron 10.0%
!!! TAAATTCTTTTTTTTTTCAT+GGG - chr6_3:96890634-96890653 Msa0967380:intron 10.0%
!!! TAATTATAGAAATGTATTTT+CGG - chr6_3:96890679-96890698 Msa0967380:intron 10.0%
!!! GAAAAATATAACTTTTTTTT+AGG + chr6_3:96890789-96890808 None:intergenic 10.0%
!!! AAAAAAGTTATATTTTTCAA+TGG - chr6_3:96890791-96890810 Msa0967380:CDS 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr6_3:96891334-96891353 None:intergenic 10.0%
!! ATAAATATATTAAAATAGGT+TGG + chr6_3:96892217-96892236 None:intergenic 10.0%
!! AATAAATATAAATATATAGG+TGG + chr6_3:96892855-96892874 None:intergenic 10.0%
!!! TTTTATTATAAAACATTGTA+AGG + chr6_3:96893924-96893943 None:intergenic 10.0%
!!! TATAAATTTTTAAGTTTATG+GGG + chr6_3:96894451-96894470 None:intergenic 10.0%
!!! AGATAATTTTTTTACAAATA+AGG - chr6_3:96894637-96894656 Msa0967380:intron 10.0%
!!! TTTTAAAAATGAAAAAACAA+AGG - chr6_3:96895407-96895426 Msa0967380:intron 10.0%
!! GAATAAATAATATTAAAGAT+AGG + chr6_3:96895941-96895960 None:intergenic 10.0%
!!! CTTATTGTTTTATTATAATA+GGG + chr6_3:96896153-96896172 None:intergenic 10.0%
!!! TCTTATTGTTTTATTATAAT+AGG + chr6_3:96896154-96896173 None:intergenic 10.0%
!! AAACAAATTAAAAGTGATTA+TGG - chr6_3:96891031-96891050 Msa0967380:intron 15.0%
!! AAACACATAAATAAAATAGT+TGG + chr6_3:96891140-96891159 None:intergenic 15.0%
!! AGTTATATTGAAAATTGAAA+TGG + chr6_3:96891236-96891255 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr6_3:96891369-96891388 Msa0967380:intron 15.0%
!!! ATAAAGTAAACTTTAAAAAG+CGG + chr6_3:96892165-96892184 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr6_3:96891268-96891287 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr6_3:96891269-96891288 None:intergenic 15.0%
!! AAACTAGAATATATTGTATT+GGG + chr6_3:96893158-96893177 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr6_3:96893182-96893201 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr6_3:96893183-96893202 None:intergenic 15.0%
!!! TCACTATATAATTAACATTT+TGG - chr6_3:96893616-96893635 Msa0967380:intron 15.0%
!!! TTTTTTATAATAGGATCAAA+GGG + chr6_3:96893679-96893698 None:intergenic 15.0%
!!! TTTTTTTATAATAGGATCAA+AGG + chr6_3:96893680-96893699 None:intergenic 15.0%
!! AATATGAAATATGAATGAAA+AGG + chr6_3:96894602-96894621 None:intergenic 15.0%
!!! ATTGGTCATATAAATTTTTA+TGG + chr6_3:96895078-96895097 None:intergenic 15.0%
!! ATTGATCATATAAATCTTTA+TGG + chr6_3:96895120-96895139 None:intergenic 15.0%
!!! ACAATAGATAAAGTTTTTTT+TGG - chr6_3:96895315-96895334 Msa0967380:intron 15.0%
!!! TTTTTCTTATAATAAGAATC+AGG - chr6_3:96895526-96895545 Msa0967380:intron 15.0%
!!! TTTTCTTATAATAAGAATCA+GGG - chr6_3:96895527-96895546 Msa0967380:intron 15.0%
!!! TTATAATAGGGTTTTATTTT+AGG + chr6_3:96896141-96896160 None:intergenic 15.0%
!!! TACAATATAGTTTTTTTTGA+AGG + chr6_3:96896249-96896268 None:intergenic 15.0%
!!! ATTAACAATATATCCAATTT+TGG - chr6_3:96896396-96896415 Msa0967380:intron 15.0%
!!! ACTTTTTTATTAACCAAAAT+TGG + chr6_3:96896412-96896431 None:intergenic 15.0%
!!! ATAAAAAAGTCATATTTTTC+AGG - chr6_3:96896422-96896441 Msa0967380:intron 15.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr6_3:96891199-96891218 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr6_3:96891309-96891328 None:intergenic 20.0%
!! AAAAGTGGAATATATTGTAT+TGG + chr6_3:96891310-96891329 None:intergenic 20.0%
!! TGTATAAATAAAGGAAAAAG+TGG + chr6_3:96891325-96891344 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr6_3:96891368-96891387 Msa0967380:intron 20.0%
!!! ACAGTGTCTTTTTAATTAAA+AGG - chr6_3:96892027-96892046 Msa0967380:intron 20.0%
!!! TAAAGTAAACTTTAAAAAGC+GGG + chr6_3:96892164-96892183 None:intergenic 20.0%
!!! TTTTTGTTGCTATGAAAAAA+TGG - chr6_3:96892343-96892362 Msa0967380:intron 20.0%
!!! TATAAAAAATAGAGTTTTCG+CGG - chr6_3:96892391-96892410 Msa0967380:intron 20.0%
!!! TTTTTACCTCTAATATAGTT+TGG - chr6_3:96892474-96892493 Msa0967380:intron 20.0%
!!! TTTTACCTCTAATATAGTTT+GGG - chr6_3:96892475-96892494 Msa0967380:intron 20.0%
!!! TACATGTTATTTGATATGTT+AGG - chr6_3:96892626-96892645 Msa0967380:intron 20.0%
!!! AGACACTTTTTTTAGAAAAT+GGG + chr6_3:96893048-96893067 None:intergenic 20.0%
!! GAAACTAGAATATATTGTAT+TGG + chr6_3:96893159-96893178 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr6_3:96893181-96893200 None:intergenic 20.0%
!!! TCTATTTCTTGTTTTTTTGA+AGG + chr6_3:96893429-96893448 None:intergenic 20.0%
!! TTCAAAAAAACAAGAAATAG+AGG - chr6_3:96893428-96893447 Msa0967380:intron 20.0%
!!! ATAAAAATGTTTGGCTTAAA+TGG + chr6_3:96893493-96893512 None:intergenic 20.0%
!!! GAAGTTTTCATAAAAATGTT+TGG + chr6_3:96893502-96893521 None:intergenic 20.0%
!! TTTATAATAAAACATCAACC+TGG - chr6_3:96893932-96893951 Msa0967380:intron 20.0%
!! TAAACGTTTATATATTAACC+AGG + chr6_3:96893953-96893972 None:intergenic 20.0%
!! AATATATAAACGTTTAGAGA+AGG - chr6_3:96893957-96893976 Msa0967380:intron 20.0%
!!! TAGCTTTTTCCAAATTTTAA+TGG - chr6_3:96894207-96894226 Msa0967380:intron 20.0%
!!! TACTTTTAACTAGAGTAAAT+AGG - chr6_3:96894243-96894262 Msa0967380:intron 20.0%
!!! AATAGAATTTTGATGACAAT+AGG + chr6_3:96894525-96894544 None:intergenic 20.0%
!! AATATATGCCAAAGAAATAA+TGG - chr6_3:96894561-96894580 Msa0967380:intron 20.0%
!!! CTTGATATCTTTTTAATGTT+TGG + chr6_3:96894675-96894694 None:intergenic 20.0%
!! TATCTATCATATAACTTTGT+AGG - chr6_3:96894742-96894761 Msa0967380:intron 20.0%
!!! TAACCTATGAATTTTCTTTA+TGG - chr6_3:96894926-96894945 Msa0967380:intron 20.0%
!!! CATATGAATTAGTAATGTTT+TGG + chr6_3:96895229-96895248 None:intergenic 20.0%
!!! ACTTCTAAGAACTTTATTAT+TGG + chr6_3:96895572-96895591 None:intergenic 20.0%
!! CTGAGAAATTATTTATATCT+GGG + chr6_3:96895597-96895616 None:intergenic 20.0%
!! CTTGTTAAAAAATCTACTTA+CGG + chr6_3:96895620-96895639 None:intergenic 20.0%
!!! TTAGAAAATGTTTCTCTTTT+AGG - chr6_3:96895876-96895895 Msa0967380:intron 20.0%
!! AAATAATATTAAAGATAGGG+TGG + chr6_3:96895937-96895956 None:intergenic 20.0%
!! CTTACTAAAAACAATTCAAT+AGG - chr6_3:96896196-96896215 Msa0967380:intron 20.0%
!! AAAAAAACTATATTGTAGTC+TGG - chr6_3:96896252-96896271 Msa0967380:intron 20.0%
!! ATTACGTAATACTAATGAAT+TGG - chr6_3:96896352-96896371 Msa0967380:CDS 20.0%
!!! ATAAGTTACAGTCATTTTTG+TGG + chr6_3:96890488-96890507 None:intergenic 25.0%
! AACAACAAAGAAATCTTCAA+TGG - chr6_3:96890508-96890527 Msa0967380:CDS 25.0%
! ATATAATACCAGTGTAAAGA+GGG + chr6_3:96890602-96890621 None:intergenic 25.0%
! AATATAATACCAGTGTAAAG+AGG + chr6_3:96890603-96890622 None:intergenic 25.0%
! TGCAAATGTTCTTTCATATA+AGG + chr6_3:96890882-96890901 None:intergenic 25.0%
!! GAATTTAAGATAAACCTAGT+TGG - chr6_3:96890951-96890970 Msa0967380:intron 25.0%
! TAAAGCTATATATACCAACT+AGG + chr6_3:96890968-96890987 None:intergenic 25.0%
!!! GCTATTATTTTGCTTGATTA+AGG - chr6_3:96890993-96891012 Msa0967380:intron 25.0%
!! ATCGATTTAGATATTACTTG+TGG + chr6_3:96891069-96891088 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr6_3:96891200-96891219 None:intergenic 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG + chr6_3:96891221-96891240 None:intergenic 25.0%
!! TTGAAATGGATCAGTTATTT+TGG + chr6_3:96891222-96891241 None:intergenic 25.0%
! AATGAGGGTTATGTAATAAA+TGG + chr6_3:96891455-96891474 None:intergenic 25.0%
!! TATGATTTGTACGAAAATGA+GGG + chr6_3:96891470-96891489 None:intergenic 25.0%
!!! TACTACTTGCTTTTCTAAAA+GGG + chr6_3:96891592-96891611 None:intergenic 25.0%
!!! ATACTACTTGCTTTTCTAAA+AGG + chr6_3:96891593-96891612 None:intergenic 25.0%
! CATTAATGACACAGATTTAA+TGG + chr6_3:96891754-96891773 None:intergenic 25.0%
!! CATTAAATCTGTGTCATTAA+TGG - chr6_3:96891752-96891771 Msa0967380:intron 25.0%
! AAACAGTCAAATATGTTAGA+GGG + chr6_3:96891877-96891896 None:intergenic 25.0%
! TAAACAGTCAAATATGTTAG+AGG + chr6_3:96891878-96891897 None:intergenic 25.0%
!! ATAAAAAATAGAGTTTTCGC+GGG - chr6_3:96892392-96892411 Msa0967380:intron 25.0%
! TTTACCTCTAATATAGTTTG+GGG - chr6_3:96892476-96892495 Msa0967380:intron 25.0%
! AACTTTGTGGATTCAAAAAT+CGG + chr6_3:96892798-96892817 None:intergenic 25.0%
!! CATCAAATGAATTGATGATA+TGG - chr6_3:96892906-96892925 Msa0967380:intron 25.0%
!!! GAGACACTTTTTTTAGAAAA+TGG + chr6_3:96893049-96893068 None:intergenic 25.0%
! AAACTTCATGTTGCAATTTA+TGG - chr6_3:96893515-96893534 Msa0967380:intron 25.0%
!!! GTGTGTTTTTATATGTTTAG+AGG - chr6_3:96893557-96893576 Msa0967380:intron 25.0%
! GATAATATATATCAGATGAG+AGG - chr6_3:96893733-96893752 Msa0967380:intron 25.0%
! AGCAACTCTCTTAAAATTTA+CGG + chr6_3:96893824-96893843 None:intergenic 25.0%
!!! ATTTTAAGAGAGTTGCTATA+CGG - chr6_3:96893827-96893846 Msa0967380:intron 25.0%
!! ATGTGGTATTCTCTTTTAAT+GGG - chr6_3:96893893-96893912 Msa0967380:intron 25.0%
!!! ACTCTAGTTAAAAGTATCAA+GGG + chr6_3:96894239-96894258 None:intergenic 25.0%
!!! TACTCTAGTTAAAAGTATCA+AGG + chr6_3:96894240-96894259 None:intergenic 25.0%
! ATTGACGAAACTTACAATTT+CGG + chr6_3:96894282-96894301 None:intergenic 25.0%
! TTAACGTTATGCAAATTTCA+GGG + chr6_3:96894339-96894358 None:intergenic 25.0%
! ATTAACGTTATGCAAATTTC+AGG + chr6_3:96894340-96894359 None:intergenic 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr6_3:96894376-96894395 None:intergenic 25.0%
!! AGAACTGAATGTATGATTTT+TGG + chr6_3:96894485-96894504 None:intergenic 25.0%
!! TGACAAAACCATTATTTCTT+TGG + chr6_3:96894572-96894591 None:intergenic 25.0%
!!! ATATCAATTTTTTGCTGCTA+TGG + chr6_3:96894725-96894744 None:intergenic 25.0%
!! TTAGCTGCAACATTTTAAAT+AGG + chr6_3:96894811-96894830 None:intergenic 25.0%
! TGTCCATAAAGAAAATTCAT+AGG + chr6_3:96894932-96894951 None:intergenic 25.0%
!!! AGACTTTTTTTTACACAAGT+TGG + chr6_3:96895007-96895026 None:intergenic 25.0%
! ATGTATGTTTATGTAGCTAT+TGG + chr6_3:96895096-96895115 None:intergenic 25.0%
! GCTGAGAAATTATTTATATC+TGG + chr6_3:96895598-96895617 None:intergenic 25.0%
! CAATAGTTATCTTCATTTCT+TGG - chr6_3:96895708-96895727 Msa0967380:intron 25.0%
! TTTGCCTTAAAGATATTACA+AGG + chr6_3:96895742-96895761 None:intergenic 25.0%
!! GGCTTTTATGTTAAATAGAT+GGG + chr6_3:96896116-96896135 None:intergenic 25.0%
!!! AATAGGGTTTTATTTTAGGT+GGG + chr6_3:96896137-96896156 None:intergenic 25.0%
!!! TAATAGGGTTTTATTTTAGG+TGG + chr6_3:96896138-96896157 None:intergenic 25.0%
!!! AAAAGTCATATTTTTCAGGA+TGG - chr6_3:96896426-96896445 Msa0967380:intron 25.0%
! TCTTTCTTTCAACAATTACA+TGG + chr6_3:96896564-96896583 None:intergenic 25.0%
!!! TTACAGTCATTTTTGTGGTT+GGG + chr6_3:96890483-96890502 None:intergenic 30.0%
CTTTCATATAAGGATCACTT+GGG + chr6_3:96890872-96890891 None:intergenic 30.0%
TCTTTCATATAAGGATCACT+TGG + chr6_3:96890873-96890892 None:intergenic 30.0%
ATATGAAAGAACATTTGCAC+TGG - chr6_3:96890883-96890902 Msa0967380:intron 30.0%
ATTAAGTTAGACTCCGTAAT+TGG - chr6_3:96891104-96891123 Msa0967380:intron 30.0%
TTAAGTTAGACTCCGTAATT+GGG - chr6_3:96891105-96891124 Msa0967380:intron 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr6_3:96891373-96891392 Msa0967380:intron 30.0%
GGGTTATGTAATAAATGGTA+CGG + chr6_3:96891450-96891469 None:intergenic 30.0%
! GTATGATTTGTACGAAAATG+AGG + chr6_3:96891471-96891490 None:intergenic 30.0%
!! GGGTCAATCAAATTGTTTTA+TGG + chr6_3:96891650-96891669 None:intergenic 30.0%
AACAGTCAAATATGTTAGAG+GGG + chr6_3:96891876-96891895 None:intergenic 30.0%
!! TTAAAATAGGTTGGTGCTTA+TGG + chr6_3:96892208-96892227 None:intergenic 30.0%
!! TGTTATTCTAGGATGTTGTT+AGG + chr6_3:96892571-96892590 None:intergenic 30.0%
!! AGATTTCTGGTTGTTATTCT+AGG + chr6_3:96892582-96892601 None:intergenic 30.0%
! GATTTTTGAATCCACAAAGT+TGG - chr6_3:96892797-96892816 Msa0967380:intron 30.0%
ATTAACCCATATCACACAAA+AGG + chr6_3:96892974-96892993 None:intergenic 30.0%
CCAAAGTAGGTCAATTATAT+CGG - chr6_3:96893217-96893236 Msa0967380:intron 30.0%
CAAAGTAGGTCAATTATATC+GGG - chr6_3:96893218-96893237 Msa0967380:intron 30.0%
! CATGTGGTATTCTCTTTTAA+TGG - chr6_3:96893892-96893911 Msa0967380:intron 30.0%
!! GGGTTTTGACCATTAAAATT+TGG + chr6_3:96894219-96894238 None:intergenic 30.0%
TTGACGAAACTTACAATTTC+GGG + chr6_3:96894281-96894300 None:intergenic 30.0%
!! TGAAGCTTTGTTAATTTCAG+CGG + chr6_3:96894309-96894328 None:intergenic 30.0%
TAACGTTATGCAAATTTCAG+GGG + chr6_3:96894338-96894357 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr6_3:96894372-96894391 None:intergenic 30.0%
TGTAGTTAAAAGGAGTAAAG+AGG + chr6_3:96895159-96895178 None:intergenic 30.0%
ACTTGTTCGTTGTAGTTAAA+AGG + chr6_3:96895169-96895188 None:intergenic 30.0%
!!! TGAATTAGTAATGTTTTGGC+AGG + chr6_3:96895225-96895244 None:intergenic 30.0%
GCAAAGTTCACTGTTAATAT+TGG - chr6_3:96895639-96895658 Msa0967380:intron 30.0%
CTTCGATCTTATTAAAGTCT+TGG - chr6_3:96895677-96895696 Msa0967380:intron 30.0%
CATGCCTTGTAATATCTTTA+AGG - chr6_3:96895735-96895754 Msa0967380:intron 30.0%
GATCTATCAAACAGTAATAG+AGG + chr6_3:96895973-96895992 None:intergenic 30.0%
! CCGTACAACTTCTTTATTTA+GGG + chr6_3:96896010-96896029 None:intergenic 30.0%
CCCTAAATAAAGAAGTTGTA+CGG - chr6_3:96896007-96896026 Msa0967380:intron 30.0%
! ACCGTACAACTTCTTTATTT+AGG + chr6_3:96896011-96896030 None:intergenic 30.0%
! GGGCTTTTATGTTAAATAGA+TGG + chr6_3:96896117-96896136 None:intergenic 30.0%
!! CATATTCAAGGTATTGTTCT+AGG + chr6_3:96896321-96896340 None:intergenic 30.0%
CTAGAACAATACCTTGAATA+TGG - chr6_3:96896319-96896338 Msa0967380:intron 30.0%
TTCCCAAAATACAACTATAG+GGG + chr6_3:96896598-96896617 None:intergenic 30.0%
GTTCCCAAAATACAACTATA+GGG + chr6_3:96896599-96896618 None:intergenic 30.0%
TGTTCCCAAAATACAACTAT+AGG + chr6_3:96896600-96896619 None:intergenic 30.0%
!! TATAGTTGTATTTTGGGAAC+AGG - chr6_3:96896599-96896618 Msa0967380:intron 30.0%
!!! AATTGTTGCTCCTTTTTCAA+GGG - chr6_3:96896718-96896737 Msa0967380:CDS 30.0%
ACTTCAGATCCACTAATTCT+TGG - chr6_3:96890424-96890443 Msa0967380:CDS 35.0%
CTTCAGATCCACTAATTCTT+GGG - chr6_3:96890425-96890444 Msa0967380:CDS 35.0%
!!! TACAGTCATTTTTGTGGTTG+GGG + chr6_3:96890482-96890501 None:intergenic 35.0%
!!! GTTACAGTCATTTTTGTGGT+TGG + chr6_3:96890484-96890503 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr6_3:96891186-96891205 None:intergenic 35.0%
TGTAGCCACATACTCTTTAA+CGG - chr6_3:96891680-96891699 Msa0967380:intron 35.0%
ATGACACAGATTTAATGGCA+CGG + chr6_3:96891749-96891768 None:intergenic 35.0%
AACACATTGTCATTGCATCT+GGG + chr6_3:96891802-96891821 None:intergenic 35.0%
AAACACATTGTCATTGCATC+TGG + chr6_3:96891803-96891822 None:intergenic 35.0%
GAAAGCTATGCAGTAAATTC+TGG + chr6_3:96891967-96891986 None:intergenic 35.0%
TACTGCATAGCTTTCAATCT+CGG - chr6_3:96891972-96891991 Msa0967380:intron 35.0%
ATGTTGTAAGGCATATGAGT+CGG + chr6_3:96892078-96892097 None:intergenic 35.0%
! TAAACTTTAAAAAGCGGGTG+CGG + chr6_3:96892159-96892178 None:intergenic 35.0%
TGCGCAGAAATGAAAATTAG+AGG + chr6_3:96892666-96892685 None:intergenic 35.0%
AAATTGAGAGACCAACTTTG+TGG + chr6_3:96892811-96892830 None:intergenic 35.0%
! ACAGTTCCTTTTGTGTGATA+TGG - chr6_3:96892965-96892984 Msa0967380:intron 35.0%
! CAGTTCCTTTTGTGTGATAT+GGG - chr6_3:96892966-96892985 Msa0967380:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr6_3:96891186-96891205 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr6_3:96893204-96893223 Msa0967380:intron 35.0%
CCGATATAATTGACCTACTT+TGG + chr6_3:96893220-96893239 None:intergenic 35.0%
AGATGCTTATGTGACAACTA+AGG + chr6_3:96893295-96893314 None:intergenic 35.0%
AAACCAGTGAGCTAAAATCA+TGG - chr6_3:96893382-96893401 Msa0967380:intron 35.0%
!!! AATCCATGATTTTAGCTCAC+TGG + chr6_3:96893388-96893407 None:intergenic 35.0%
AGAGGTGATGTTTACTTCAT+TGG - chr6_3:96893575-96893594 Msa0967380:intron 35.0%
ATGTTTACTTCATTGGAGCA+AGG - chr6_3:96893582-96893601 Msa0967380:intron 35.0%
ACGACAACTTCAATTTCATG+TGG - chr6_3:96893876-96893895 Msa0967380:intron 35.0%
AAACGTTTAGAGAAGGCAAA+CGG - chr6_3:96893964-96893983 Msa0967380:intron 35.0%
TGACGAAACTTACAATTTCG+GGG + chr6_3:96894280-96894299 None:intergenic 35.0%
!! AAGCTTTGTTAATTTCAGCG+GGG + chr6_3:96894307-96894326 None:intergenic 35.0%
!! GAAGCTTTGTTAATTTCAGC+GGG + chr6_3:96894308-96894327 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr6_3:96894371-96894390 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr6_3:96894373-96894392 None:intergenic 35.0%
GAGATTGTGTCATAGCTAAA+TGG - chr6_3:96895381-96895400 Msa0967380:intron 35.0%
!! ATCATTAACTTGTGCCTTGA+GGG + chr6_3:96895777-96895796 None:intergenic 35.0%
!! AATCATTAACTTGTGCCTTG+AGG + chr6_3:96895778-96895797 None:intergenic 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr6_3:96895899-96895918 Msa0967380:intron 35.0%
TGCATATTGCACCATATTCA+AGG + chr6_3:96896333-96896352 None:intergenic 35.0%
TTCCACATTTGGTAGGTTTA+TGG - chr6_3:96896474-96896493 Msa0967380:intron 35.0%
ATCCATAAACCTACCAAATG+TGG + chr6_3:96896479-96896498 None:intergenic 35.0%
! TGACCCCTATAGTTGTATTT+TGG - chr6_3:96896592-96896611 Msa0967380:intron 35.0%
! GACCCCTATAGTTGTATTTT+GGG - chr6_3:96896593-96896612 Msa0967380:intron 35.0%
GAAAGACCAAAGCCTAATAT+AGG - chr6_3:96896641-96896660 Msa0967380:intron 35.0%
TGGATTCCTATATTAGGCTT+TGG + chr6_3:96896650-96896669 None:intergenic 35.0%
TACCTGTGGATTCCTATATT+AGG + chr6_3:96896656-96896675 None:intergenic 35.0%
TGTCCTATTCAAGCAAGAAA+AGG - chr6_3:96896682-96896701 Msa0967380:CDS 35.0%
GTCCTATTCAAGCAAGAAAA+GGG - chr6_3:96896683-96896702 Msa0967380:CDS 35.0%
TCCTATTCAAGCAAGAAAAG+GGG - chr6_3:96896684-96896703 Msa0967380:CDS 35.0%
!! CAATTGTTGCTCCTTTTTCA+AGG - chr6_3:96896717-96896736 Msa0967380:CDS 35.0%
TTGAAGTGATCCCTTGAAAA+AGG + chr6_3:96896731-96896750 None:intergenic 35.0%
! TTTTCTGCTCAAAATGACCT+TGG - chr6_3:96896761-96896780 Msa0967380:CDS 35.0%
TGCCTATTTCAATGCAAGAA+GGG - chr6_3:96896799-96896818 Msa0967380:CDS 35.0%
ATCACTCTCCCAAGAATTAG+TGG + chr6_3:96890436-96890455 None:intergenic 40.0%
CTAATTCTTGGGAGAGTGAT+AGG - chr6_3:96890436-96890455 Msa0967380:CDS 40.0%
GTGGTAACTGAAGAAGGAAA+GGG + chr6_3:96890541-96890560 None:intergenic 40.0%
! GTTGTCTCTTCTTTTTCTGC+AGG - chr6_3:96890821-96890840 Msa0967380:intron 40.0%
TGGTGTTCGATTCCCAATTA+CGG + chr6_3:96891120-96891139 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr6_3:96891185-96891204 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr6_3:96891376-96891395 Msa0967380:intron 40.0%
! TAGAGGCATATGACAGCTAA+GGG + chr6_3:96891493-96891512 None:intergenic 40.0%
! TTAGAGGCATATGACAGCTA+AGG + chr6_3:96891494-96891513 None:intergenic 40.0%
TGCCTCTAAATTGATCGATC+TGG - chr6_3:96891505-96891524 Msa0967380:intron 40.0%
GACCAGATCGATCAATTTAG+AGG + chr6_3:96891510-96891529 None:intergenic 40.0%
GTAGCCACATACTCTTTAAC+GGG - chr6_3:96891681-96891700 Msa0967380:intron 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG - chr6_3:96891704-96891723 Msa0967380:intron 40.0%
!! TAATGGCACGGTGTCATTAA+TGG + chr6_3:96891737-96891756 None:intergenic 40.0%
TTTGTGTCGCCCAGATTTAA+TGG - chr6_3:96891820-96891839 Msa0967380:intron 40.0%
TAATGGCACGTTGCCATTAA+TGG - chr6_3:96891837-96891856 Msa0967380:intron 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG + chr6_3:96891704-96891723 None:intergenic 40.0%
TGCCTTACAACATCTAGACT+TGG - chr6_3:96892085-96892104 Msa0967380:intron 40.0%
TGCCAAGTCTAGATGTTGTA+AGG + chr6_3:96892090-96892109 None:intergenic 40.0%
! AAACTTTAAAAAGCGGGTGC+GGG + chr6_3:96892158-96892177 None:intergenic 40.0%
! AAAAATAGAGTTTTCGCGGG+TGG - chr6_3:96892395-96892414 Msa0967380:intron 40.0%
CCTCTAATATAGTTTGGGGA+CGG - chr6_3:96892480-96892499 Msa0967380:intron 40.0%
!! TTCTAGGATGTTGTTAGGCA+TGG + chr6_3:96892566-96892585 None:intergenic 40.0%
! AGTAGTGGGAAGTAGATTTC+TGG + chr6_3:96892595-96892614 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr6_3:96891185-96891204 None:intergenic 40.0%
TTCATTGGAGCAAGGATAGA+AGG - chr6_3:96893590-96893609 Msa0967380:intron 40.0%
TCATTGGAGCAAGGATAGAA+GGG - chr6_3:96893591-96893610 Msa0967380:intron 40.0%
! TTCCTGTTTGCTACAACACA+TGG - chr6_3:96893996-96894015 Msa0967380:intron 40.0%
CTACAACACATGGCAATCAA+TGG - chr6_3:96894006-96894025 Msa0967380:intron 40.0%
TGGACATCAACAACTCACAA+AGG - chr6_3:96894026-96894045 Msa0967380:intron 40.0%
CATACAACTCATTCGTGCAA+TGG - chr6_3:96894159-96894178 Msa0967380:intron 40.0%
ACGAAACTTACAATTTCGGG+GGG + chr6_3:96894278-96894297 None:intergenic 40.0%
GACGAAACTTACAATTTCGG+GGG + chr6_3:96894279-96894298 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr6_3:96894370-96894389 None:intergenic 40.0%
ACGTAAGTGCAAAAGTTCAG+GGG + chr6_3:96894420-96894439 None:intergenic 40.0%
CACGTAAGTGCAAAAGTTCA+GGG + chr6_3:96894421-96894440 None:intergenic 40.0%
TGTAGGACAATGTGATCTAC+CGG - chr6_3:96894759-96894778 Msa0967380:intron 40.0%
AGGAAGAAGAAACAAGGCTT+AGG + chr6_3:96894895-96894914 None:intergenic 40.0%
! CTTGTTTCTTCTTCCTTCTG+CGG - chr6_3:96894899-96894918 Msa0967380:intron 40.0%
CATAGGTTAATATCCGCAGA+AGG + chr6_3:96894915-96894934 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr6_3:96895760-96895779 Msa0967380:intron 40.0%
GTTTCTTAACATGTGCCCTA+AGG - chr6_3:96895898-96895917 Msa0967380:intron 40.0%
AATGTGGAATCTGTTGTTCC+TGG + chr6_3:96896463-96896482 None:intergenic 40.0%
GGAACAACAGATTCCACATT+TGG - chr6_3:96896463-96896482 Msa0967380:intron 40.0%
CAACAGATTCCACATTTGGT+AGG - chr6_3:96896467-96896486 Msa0967380:intron 40.0%
AGCCTAATATAGGAATCCAC+AGG - chr6_3:96896651-96896670 Msa0967380:CDS 40.0%
ATAGGACAAACACATACCTG+TGG + chr6_3:96896670-96896689 None:intergenic 40.0%
! TCCCCTTTTCTTGCTTGAAT+AGG + chr6_3:96896688-96896707 None:intergenic 40.0%
TATTCAAGCAAGAAAAGGGG+AGG - chr6_3:96896687-96896706 Msa0967380:CDS 40.0%
CTGCCTATTTCAATGCAAGA+AGG - chr6_3:96896798-96896817 Msa0967380:CDS 40.0%
TGCCCTTCTTGCATTGAAAT+AGG + chr6_3:96896804-96896823 None:intergenic 40.0%
TTTCAATGCAAGAAGGGCAA+CGG - chr6_3:96896805-96896824 Msa0967380:CDS 40.0%
GGTGGTAACTGAAGAAGGAA+AGG + chr6_3:96890542-96890561 None:intergenic 45.0%
!! AATCTCAATCCTTGGCTTGG+TGG + chr6_3:96890560-96890579 None:intergenic 45.0%
ACCAAGCCAAGGATTGAGAT+TGG - chr6_3:96890559-96890578 Msa0967380:CDS 45.0%
TCCAATCTCAATCCTTGGCT+TGG + chr6_3:96890563-96890582 None:intergenic 45.0%
AAGCCAAGGATTGAGATTGG+AGG - chr6_3:96890562-96890581 Msa0967380:CDS 45.0%
TCTCCTCCAATCTCAATCCT+TGG + chr6_3:96890568-96890587 None:intergenic 45.0%
AAGGATTGAGATTGGAGGAG+AGG - chr6_3:96890567-96890586 Msa0967380:CDS 45.0%
ATATAAGGATCACTTGGGCC+AGG + chr6_3:96890867-96890886 None:intergenic 45.0%
TTGTAATACTCCCTCTGTCC+CGG - chr6_3:96891164-96891183 Msa0967380:intron 45.0%
ATGTGGCTACACAAGACGTA+CGG + chr6_3:96891671-96891690 None:intergenic 45.0%
! GCTACCCGTTAAAGAGTATG+TGG + chr6_3:96891688-96891707 None:intergenic 45.0%
! CTCTTTAACGGGTAGCACTT+TGG - chr6_3:96891692-96891711 Msa0967380:intron 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr6_3:96891720-96891739 None:intergenic 45.0%
! GGCAACGTGCCATTAAATCT+GGG + chr6_3:96891832-96891851 None:intergenic 45.0%
! TGGCAACGTGCCATTAAATC+TGG + chr6_3:96891833-96891852 None:intergenic 45.0%
ATGTTAGAGGGGTAGCACTT+TGG + chr6_3:96891865-96891884 None:intergenic 45.0%
CGGCGTTCTATAAGATCGAA+CGG - chr6_3:96891992-96892011 Msa0967380:intron 45.0%
! AACTTTAAAAAGCGGGTGCG+GGG + chr6_3:96892157-96892176 None:intergenic 45.0%
CCGTCCCCAAACTATATTAG+AGG + chr6_3:96892483-96892502 None:intergenic 45.0%
ATATAGTTTGGGGACGGAGA+CGG - chr6_3:96892486-96892505 Msa0967380:intron 45.0%
ATGTTGTTAGGCATGGCAAC+GGG + chr6_3:96892559-96892578 None:intergenic 45.0%
GATGTTGTTAGGCATGGCAA+CGG + chr6_3:96892560-96892579 None:intergenic 45.0%
TCTACTTCCCACTACTCACA+TGG - chr6_3:96892599-96892618 Msa0967380:intron 45.0%
GTAGCTACCATGTGAGTAGT+GGG + chr6_3:96892609-96892628 None:intergenic 45.0%
TGTAGCTACCATGTGAGTAG+TGG + chr6_3:96892610-96892629 None:intergenic 45.0%
AAATTAGTACTCCTCCGTCC+CGG - chr6_3:96893013-96893032 Msa0967380:intron 45.0%
GGTCAATTATATCGGGACGA+AGG - chr6_3:96893225-96893244 Msa0967380:intron 45.0%
TGCCATGTGTTGTAGCAAAC+AGG + chr6_3:96894001-96894020 None:intergenic 45.0%
AAACTTACAATTTCGGGGGG+GGG + chr6_3:96894275-96894294 None:intergenic 45.0%
GAAACTTACAATTTCGGGGG+GGG + chr6_3:96894276-96894295 None:intergenic 45.0%
CGAAACTTACAATTTCGGGG+GGG + chr6_3:96894277-96894296 None:intergenic 45.0%
GTAAGTGCAAAAGTTCAGGG+GGG + chr6_3:96894418-96894437 None:intergenic 45.0%
CGTAAGTGCAAAAGTTCAGG+GGG + chr6_3:96894419-96894438 None:intergenic 45.0%
GCACGTAAGTGCAAAAGTTC+AGG + chr6_3:96894422-96894441 None:intergenic 45.0%
CTGCTATGGCATTCTTGTCT+TGG + chr6_3:96894711-96894730 None:intergenic 45.0%
CGCAGAAGGAAGAAGAAACA+AGG + chr6_3:96894901-96894920 None:intergenic 45.0%
!! GGTGTTAACTTGTGCCCTTA+GGG + chr6_3:96895916-96895935 None:intergenic 45.0%
!! TGGTGTTAACTTGTGCCCTT+AGG + chr6_3:96895917-96895936 None:intergenic 45.0%
TTGAAATAGGCAGCAGCAAC+AGG + chr6_3:96896791-96896810 None:intergenic 45.0%
!!! AAAAATATAACTTTTTTTTA+GGG + chr6_3:96890788-96890807 None:intergenic 5.0%
!! AGTAATAAATATATTAAAAT+AGG + chr6_3:96892221-96892240 None:intergenic 5.0%
!!! ATATAAATTTTTAAGTTTAT+GGG + chr6_3:96894452-96894471 None:intergenic 5.0%
!!! AATATAAATTTTTAAGTTTA+TGG + chr6_3:96894453-96894472 None:intergenic 5.0%
!! AATAAATAATATTAAAGATA+GGG + chr6_3:96895940-96895959 None:intergenic 5.0%
!! TTAATATTATTTATTCATAA+AGG - chr6_3:96895945-96895964 Msa0967380:intron 5.0%
!! GGCTTGGTGGTAACTGAAGA+AGG + chr6_3:96890547-96890566 None:intergenic 50.0%
CTTCAGTTACCACCAAGCCA+AGG - chr6_3:96890548-96890567 Msa0967380:CDS 50.0%
AGATTGGAGGAGAGGACATG+AGG - chr6_3:96890575-96890594 Msa0967380:CDS 50.0%
CATGAGGTCCCTCTTTACAC+TGG - chr6_3:96890591-96890610 Msa0967380:CDS 50.0%
TCTGCAGGTCATGATAGACC+CGG - chr6_3:96890836-96890855 Msa0967380:intron 50.0%
ATGATAGACCCGGATGTTCC+TGG - chr6_3:96890846-96890865 Msa0967380:intron 50.0%
GTCAGTTATTCCGGGACAGA+GGG + chr6_3:96891177-96891196 None:intergenic 50.0%
TGTGGCTACACAAGACGTAC+GGG + chr6_3:96891670-96891689 None:intergenic 50.0%
!! GCACGGTGTCATTAATGGCA+CGG + chr6_3:96891732-96891751 None:intergenic 50.0%
! AATAGAGTTTTCGCGGGTGG+AGG - chr6_3:96892398-96892417 Msa0967380:intron 50.0%
TATAGTTTGGGGACGGAGAC+GGG - chr6_3:96892487-96892506 Msa0967380:intron 50.0%
TGTTGTTAGGCATGGCAACG+GGG + chr6_3:96892558-96892577 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr6_3:96891181-96891200 None:intergenic 50.0%
! CTCACAAAGGTACAGTGACG+AGG - chr6_3:96894039-96894058 Msa0967380:intron 50.0%
GCAGATCTTCTGCATGAAGC+CGG + chr6_3:96894781-96894800 None:intergenic 50.0%
AGGATGGTGACAGACATTCC+AGG - chr6_3:96896442-96896461 Msa0967380:intron 50.0%
TCACTTGGGCCAGGAACATC+CGG + chr6_3:96890858-96890877 None:intergenic 55.0%
GGTCAGTTATTCCGGGACAG+AGG + chr6_3:96891178-96891197 None:intergenic 55.0%
TTAAAAAGCGGGTGCGGGGT+GGG + chr6_3:96892153-96892172 None:intergenic 55.0%
TTTAAAAAGCGGGTGCGGGG+TGG + chr6_3:96892154-96892173 None:intergenic 55.0%
ATAGTTTGGGGACGGAGACG+GGG - chr6_3:96892488-96892507 Msa0967380:intron 55.0%
CGGGGACGAGTACATAGAAG+CGG - chr6_3:96892506-96892525 Msa0967380:intron 55.0%
GGGGACGAGTACATAGAAGC+GGG - chr6_3:96892507-96892526 Msa0967380:intron 55.0%
GGGACGAGTACATAGAAGCG+GGG - chr6_3:96892508-96892527 Msa0967380:intron 55.0%
CAGCAGCAACAGGTACACCA+AGG + chr6_3:96896781-96896800 None:intergenic 55.0%
CACTTGGGCCAGGAACATCC+GGG + chr6_3:96890857-96890876 None:intergenic 60.0%
! AGTTTTCGCGGGTGGAGGCA+GGG - chr6_3:96892403-96892422 Msa0967380:intron 60.0%
ACCGGGAGACCTGTTCCCAT+TGG - chr6_3:96892431-96892450 Msa0967380:intron 60.0%
CCCAATGGGAACAGGTCTCC+CGG + chr6_3:96892435-96892454 None:intergenic 60.0%
CCGGGAGACCTGTTCCCATT+GGG - chr6_3:96892432-96892451 Msa0967380:intron 60.0%
CGGGAGACCTGTTCCCATTG+GGG - chr6_3:96892433-96892452 Msa0967380:intron 60.0%
GGGAGACCTGTTCCCATTGG+GGG - chr6_3:96892434-96892453 Msa0967380:intron 60.0%
AGACCTGTTCCCATTGGGGG+CGG - chr6_3:96892437-96892456 Msa0967380:intron 60.0%
TGTTAGGCATGGCAACGGGG+CGG + chr6_3:96892555-96892574 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr6_3:96893027-96893046 None:intergenic 60.0%
GAAGGGCAACGGCTCCTAGA+AGG - chr6_3:96896816-96896835 Msa0967380:CDS 60.0%
! GAGTTTTCGCGGGTGGAGGC+AGG - chr6_3:96892402-96892421 Msa0967380:intron 65.0%
GACCTGTTCCCATTGGGGGC+GGG - chr6_3:96892438-96892457 Msa0967380:intron 65.0%
ACCTGTTCCCATTGGGGGCG+GGG - chr6_3:96892439-96892458 Msa0967380:intron 65.0%
CACTCAACCCCGCCCCCAAT+GGG + chr6_3:96892449-96892468 None:intergenic 65.0%
ACACTCAACCCCGCCCCCAA+TGG + chr6_3:96892450-96892469 None:intergenic 65.0%
GTTAGGCATGGCAACGGGGC+GGG + chr6_3:96892554-96892573 None:intergenic 65.0%
!! TGCGGGCGGGTTTTGTGGCG+GGG + chr6_3:96892124-96892143 None:intergenic 70.0%
!! GTGCGGGCGGGTTTTGTGGC+GGG + chr6_3:96892125-96892144 None:intergenic 70.0%
!! GGTGCGGGCGGGTTTTGTGG+CGG + chr6_3:96892126-96892145 None:intergenic 70.0%
!! GTGGGTGCGGGCGGGTTTTG+TGG + chr6_3:96892129-96892148 None:intergenic 70.0%
GGTGGAGGCAGGGCTGAGAC+CGG - chr6_3:96892413-96892432 Msa0967380:intron 70.0%
GTGGAGGCAGGGCTGAGACC+GGG - chr6_3:96892414-96892433 Msa0967380:intron 70.0%
ACCCCGCCCCCAATGGGAAC+AGG + chr6_3:96892443-96892462 None:intergenic 70.0%
!! GGCGGGTTTTGTGGCGGGGG+CGG + chr6_3:96892120-96892139 None:intergenic 75.0%
!! GCGGGCGGGTTTTGTGGCGG+GGG + chr6_3:96892123-96892142 None:intergenic 75.0%
CATGGCAACGGGGCGGGTCG+GGG + chr6_3:96892548-96892567 None:intergenic 75.0%
GCATGGCAACGGGGCGGGTC+GGG + chr6_3:96892549-96892568 None:intergenic 75.0%
GGCATGGCAACGGGGCGGGT+CGG + chr6_3:96892550-96892569 None:intergenic 75.0%
! TGCGGGGTGGGCGTGGGTGC+GGG + chr6_3:96892141-96892160 None:intergenic 80.0%
! GTGCGGGGTGGGCGTGGGTG+CGG + chr6_3:96892142-96892161 None:intergenic 80.0%
! AGCGGGTGCGGGGTGGGCGT+GGG + chr6_3:96892147-96892166 None:intergenic 80.0%
! AAGCGGGTGCGGGGTGGGCG+TGG + chr6_3:96892148-96892167 None:intergenic 80.0%
! CAACGGGGCGGGTCGGGGAC+GGG + chr6_3:96892543-96892562 None:intergenic 80.0%
! GCAACGGGGCGGGTCGGGGA+CGG + chr6_3:96892544-96892563 None:intergenic 80.0%
! GGGTGGGCGTGGGTGCGGGC+GGG + chr6_3:96892137-96892156 None:intergenic 85.0%
! GGGGTGGGCGTGGGTGCGGG+CGG + chr6_3:96892138-96892157 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 96890412 96896844 96890412 ID=Msa0967380;Name=Msa0967380
chr6_3 mRNA 96890412 96896844 96890412 ID=Msa0967380-mRNA-1;Parent=Msa0967380;Name=Msa0967380-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|175
chr6_3 exon 96896644 96896844 96896644 ID=Msa0967380-mRNA-1:exon:17981;Parent=Msa0967380-mRNA-1
chr6_3 exon 96896352 96896413 96896352 ID=Msa0967380-mRNA-1:exon:17980;Parent=Msa0967380-mRNA-1
chr6_3 exon 96890772 96890812 96890772 ID=Msa0967380-mRNA-1:exon:17979;Parent=Msa0967380-mRNA-1
chr6_3 exon 96890412 96890635 96890412 ID=Msa0967380-mRNA-1:exon:17978;Parent=Msa0967380-mRNA-1
chr6_3 CDS 96896644 96896844 96896644 ID=Msa0967380-mRNA-1:cds;Parent=Msa0967380-mRNA-1
chr6_3 CDS 96896352 96896413 96896352 ID=Msa0967380-mRNA-1:cds;Parent=Msa0967380-mRNA-1
chr6_3 CDS 96890772 96890812 96890772 ID=Msa0967380-mRNA-1:cds;Parent=Msa0967380-mRNA-1
chr6_3 CDS 96890412 96890635 96890412 ID=Msa0967380-mRNA-1:cds;Parent=Msa0967380-mRNA-1
Gene Sequence

>Msa0967380

ATGGGAAGTATCACTTCAGATCCACTAATTCTTGGGAGAGTGATAGGAGATGTTATTGACTATTTCACCCCAACCACAAAAATGACTGTAACTTATAACAACAAAGAAATCTTCAATGGATATGAACCCTTTCCTTCTTCAGTTACCACCAAGCCAAGGATTGAGATTGGAGGAGAGGACATGAGGTCCCTCTTTACACTGGTCATGATAGACCCGGATGTTCCTGGCCCAAGTGATCCTTATATGAAAGAACATTTGCACTGGATGGTGACAGACATTCCAGGAACAACAGATTCCACATTTGGCAAAGAGTTGACAAGCTATGAAAGACCAAAGCCTAATATAGGAATCCACAGGTATGTGTTTGTCCTATTCAAGCAAGAAAAGGGGAGGAAGCACTCAATTGTTGCTCCTTTTTCAAGGGATCACTTCAACACACGTGCTTTTTCTGCTCAAAATGACCTTGGTGTACCTGTTGCTGCTGCCTATTTCAATGCAAGAAGGGCAACGGCTCCTAGAAGGCGCTAG

Protein sequence

>Msa0967380

MGSITSDPLILGRVIGDVIDYFTPTTKMTVTYNNKEIFNGYEPFPSSVTTKPRIEIGGEDMRSLFTLVMIDPDVPGPSDPYMKEHLHWMVTDIPGTTDSTFGKELTSYERPKPNIGIHRYVFVLFKQEKGRKHSIVAPFSRDHFNTRAFSAQNDLGVPVAAAYFNARRATAPRRR*