Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556430 | XP_024633433.1 | 49.751 | 201 | 101 | 0 | 5 | 205 | 41 | 241 | 7.19e-63 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556430 | A0A396HMX6 | 47.264 | 201 | 106 | 0 | 5 | 205 | 41 | 241 | 1.95e-56 | 189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0556430 | 0.814919 | 1.205329e-51 | -8.615850e-47 |
| Msa0001940 | Msa0556430 | 0.810562 | 1.083823e-50 | -8.615850e-47 |
| Msa0009180 | Msa0556430 | 0.800282 | 1.550837e-48 | -8.615850e-47 |
| Msa0024550 | Msa0556430 | 0.842360 | 2.712244e-58 | -8.615850e-47 |
| Msa0074600 | Msa0556430 | 0.803703 | 3.071477e-49 | -8.615850e-47 |
| Msa0089750 | Msa0556430 | 0.823197 | 1.576885e-53 | -8.615850e-47 |
| Msa0103770 | Msa0556430 | 0.806457 | 8.151698e-50 | -8.615850e-47 |
| Msa0120400 | Msa0556430 | 0.835168 | 1.962783e-56 | -8.615850e-47 |
| Msa0131770 | Msa0556430 | 0.824352 | 8.457920e-54 | -8.615850e-47 |
| Msa0164330 | Msa0556430 | 0.825315 | 5.011176e-54 | -8.615850e-47 |
| Msa0225100 | Msa0556430 | 0.814876 | 1.232230e-51 | -8.615850e-47 |
| Msa0237420 | Msa0556430 | 0.815306 | 9.888994e-52 | -8.615850e-47 |
| Msa0364340 | Msa0556430 | 0.801155 | 1.028688e-48 | -8.615850e-47 |
| Msa0367870 | Msa0556430 | 0.806617 | 7.540986e-50 | -8.615850e-47 |
| Msa0388340 | Msa0556430 | 0.817747 | 2.808691e-52 | -8.615850e-47 |
| Msa0403640 | Msa0556430 | 0.801580 | 8.420023e-49 | -8.615850e-47 |
| Msa0405130 | Msa0556430 | 0.804451 | 2.146949e-49 | -8.615850e-47 |
| Msa0413410 | Msa0556430 | 0.810355 | 1.201029e-50 | -8.615850e-47 |
| Msa0464680 | Msa0556430 | 0.800498 | 1.401013e-48 | -8.615850e-47 |
| Msa0244640 | Msa0556430 | 0.817828 | 2.693198e-52 | -8.615850e-47 |
| Msa0266180 | Msa0556430 | 0.814741 | 1.320488e-51 | -8.615850e-47 |
| Msa0283330 | Msa0556430 | 0.807359 | 5.252342e-50 | -8.615850e-47 |
| Msa0287740 | Msa0556430 | 0.810928 | 9.032187e-51 | -8.615850e-47 |
| Msa0290870 | Msa0556430 | 0.826949 | 2.048660e-54 | -8.615850e-47 |
| Msa0317000 | Msa0556430 | 0.802898 | 4.508196e-49 | -8.615850e-47 |
| Msa0321620 | Msa0556430 | 0.811435 | 7.011792e-51 | -8.615850e-47 |
| Msa0336320 | Msa0556430 | 0.805338 | 1.401150e-49 | -8.615850e-47 |
| Msa0342750 | Msa0556430 | 0.827626 | 1.410251e-54 | -8.615850e-47 |
| Msa0556430 | Msa0581470 | 0.804071 | 2.576277e-49 | -8.615850e-47 |
| Msa0556430 | Msa0583360 | -0.802161 | 6.397404e-49 | -8.615850e-47 |
| Msa0556430 | Msa0600700 | 0.823308 | 1.485788e-53 | -8.615850e-47 |
| Msa0556430 | Msa0617500 | 0.803594 | 3.236224e-49 | -8.615850e-47 |
| Msa0556430 | Msa0681250 | 0.804140 | 2.491923e-49 | -8.615850e-47 |
| Msa0556430 | Msa0709270 | 0.816255 | 6.077508e-52 | -8.615850e-47 |
| Msa0556430 | Msa0731940 | 0.812656 | 3.798474e-51 | -8.615850e-47 |
| Msa0556430 | Msa0756460 | 0.823594 | 1.273411e-53 | -8.615850e-47 |
| Msa0556430 | Msa0760130 | 0.802626 | 5.130810e-49 | -8.615850e-47 |
| Msa0556430 | Msa0832340 | 0.835313 | 1.804824e-56 | -8.615850e-47 |
| Msa0556430 | Msa0844490 | 0.830363 | 3.062773e-55 | -8.615850e-47 |
| Msa0556430 | Msa0875290 | 0.804674 | 1.928854e-49 | -8.615850e-47 |
| Msa0556430 | Msa0888130 | 0.816465 | 5.454527e-52 | -8.615850e-47 |
| Msa0556430 | Msa0899430 | 0.803926 | 2.761464e-49 | -8.615850e-47 |
| Msa0556430 | Msa0900910 | 0.808662 | 2.773726e-50 | -8.615850e-47 |
| Msa0556430 | Msa0914270 | 0.813186 | 2.907590e-51 | -8.615850e-47 |
| Msa0556430 | Msa0967280 | 0.810703 | 1.010028e-50 | -8.615850e-47 |
| Msa0556430 | Msa0967380 | 0.847936 | 8.435765e-60 | -8.615850e-47 |
| Msa0556430 | Msa0967870 | 0.807482 | 4.946108e-50 | -8.615850e-47 |
| Msa0556430 | Msa0974080 | 0.800612 | 1.328469e-48 | -8.615850e-47 |
| Msa0556430 | Msa0980200 | 0.933003 | 3.633848e-95 | -8.615850e-47 |
| Msa0556430 | Msa0997370 | 0.826340 | 2.861892e-54 | -8.615850e-47 |
| Msa0556430 | Msa1017750 | 0.805590 | 1.240383e-49 | -8.615850e-47 |
| Msa0556430 | Msa1019150 | 0.804765 | 1.846118e-49 | -8.615850e-47 |
| Msa0556430 | Msa1060540 | 0.810393 | 1.178969e-50 | -8.615850e-47 |
| Msa0556430 | Msa1066670 | 0.806367 | 8.514507e-50 | -8.615850e-47 |
| Msa0556430 | Msa1083840 | 0.808677 | 2.753267e-50 | -8.615850e-47 |
| Msa0556430 | Msa1101090 | 0.832303 | 1.020716e-55 | -8.615850e-47 |
| Msa0556430 | Msa1108760 | 0.801004 | 1.104861e-48 | -8.615850e-47 |
| Msa0556430 | Msa1121480 | 0.825508 | 4.510932e-54 | -8.615850e-47 |
| Msa0556430 | Msa1121490 | 0.843396 | 1.437931e-58 | -8.615850e-47 |
| Msa0556430 | Msa1137570 | 0.806395 | 8.401292e-50 | -8.615850e-47 |
| Msa0556430 | Msa1142670 | 0.804736 | 1.872011e-49 | -8.615850e-47 |
| Msa0556430 | Msa1144450 | 0.991829 | 9.017913e-190 | -8.615850e-47 |
| Msa0556430 | Msa1147740 | 0.816970 | 4.200912e-52 | -8.615850e-47 |
| Msa0556430 | Msa1155170 | -0.802493 | 5.465612e-49 | -8.615850e-47 |
| Msa0556430 | Msa1221230 | 0.805512 | 1.288127e-49 | -8.615850e-47 |
| Msa0556430 | Msa1225860 | -0.802464 | 5.541862e-49 | -8.615850e-47 |
| Msa0556430 | Msa1226460 | 0.816806 | 4.573312e-52 | -8.615850e-47 |
| Msa0556430 | Msa1232740 | 0.813472 | 2.515284e-51 | -8.615850e-47 |
| Msa0556430 | Msa1236410 | 0.800838 | 1.194459e-48 | -8.615850e-47 |
| Msa0556430 | Msa1238820 | 0.812073 | 5.092014e-51 | -8.615850e-47 |
| Msa0556430 | Msa1248310 | 0.823000 | 1.752894e-53 | -8.615850e-47 |
| Msa0556430 | Msa1248370 | 0.839630 | 1.412621e-57 | -8.615850e-47 |
| Msa0556430 | Msa1285550 | 0.830970 | 2.175904e-55 | -8.615850e-47 |
| Msa0556430 | Msa1286800 | 0.832278 | 1.035661e-55 | -8.615850e-47 |
| Msa0556430 | Msa1287190 | 0.802985 | 4.325495e-49 | -8.615850e-47 |
| Msa0556430 | Msa1287220 | 0.809711 | 1.653255e-50 | -8.615850e-47 |
| Msa0556430 | Msa1313320 | 0.806288 | 8.847496e-50 | -8.615850e-47 |
| Msa0556430 | Msa1325410 | -0.807637 | 4.587208e-50 | -8.615850e-47 |
| Msa0556430 | Msa1325920 | 0.800032 | 1.743429e-48 | -8.615850e-47 |
| Msa0556430 | Msa1345100 | 0.803306 | 3.711932e-49 | -8.615850e-47 |
| Msa0556430 | Msa1355450 | 0.815231 | 1.028038e-51 | -8.615850e-47 |
| Msa0556430 | Msa1366340 | 0.806917 | 6.515342e-50 | -8.615850e-47 |
| Msa0556430 | Msa1366810 | 0.805557 | 1.260588e-49 | -8.615850e-47 |
| Msa0556430 | Msa1390700 | 0.812992 | 3.207414e-51 | -8.615850e-47 |
| Msa0556430 | Msa1392900 | 0.802327 | 5.914111e-49 | -8.615850e-47 |
| Msa0556430 | Msa1392910 | 0.807807 | 4.219762e-50 | -8.615850e-47 |
| Msa0556430 | Msa1423780 | 0.807249 | 5.543618e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556430 | MtrunA17_Chr5g0393501 | 47.264 | 201 | 106 | 0 | 5 | 205 | 41 | 241 | 3.76e-60 | 189 |
| Msa0556430 | MtrunA17_Chr4g0034781 | 26.178 | 191 | 134 | 2 | 5 | 193 | 18 | 203 | 5.93e-12 | 62.8 |
| Msa0556430 | MtrunA17_Chr4g0044671 | 25.654 | 191 | 135 | 2 | 5 | 193 | 24 | 209 | 1.65e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCTAATATTGATGAATT+TGG | 0.071532 | 4_1:+54635991 | Msa0556430:CDS |
| TATAAGGCATTGTTAAAATT+TGG | 0.194239 | 4_1:-54635780 | None:intergenic |
| AAGAATTCCGCAATGAAAAT+TGG | 0.202897 | 4_1:-54635691 | None:intergenic |
| TGATGAATTTGGGACAAAAT+TGG | 0.234698 | 4_1:+54636002 | Msa0556430:CDS |
| TACTATGAAATCAATGATTA+TGG | 0.240311 | 4_1:+54635832 | Msa0556430:CDS |
| CATCTTCCTTTCATTCATAA+TGG | 0.274505 | 4_1:+54635528 | Msa0556430:five_prime_UTR |
| GTCCCAAATTCATCAATATT+AGG | 0.280924 | 4_1:-54635994 | None:intergenic |
| GTTTAAGTGTGACTCAATTA+TGG | 0.303074 | 4_1:+54636306 | Msa0556430:CDS |
| TGCCTAATATTGATGAATTT+GGG | 0.308974 | 4_1:+54635992 | Msa0556430:CDS |
| CTAAATATGTAAAAGATATT+AGG | 0.309400 | 4_1:-54635855 | None:intergenic |
| ACCGTGGAAATTCGTTTGTT+TGG | 0.318850 | 4_1:-54635918 | None:intergenic |
| TCCCAACAAAAGGTAATATA+AGG | 0.319342 | 4_1:-54635796 | None:intergenic |
| TTGCATACAGTGATGAAATA+AGG | 0.320941 | 4_1:-54635562 | None:intergenic |
| GGAAATTCGTTTGTTTGGAT+TGG | 0.329638 | 4_1:-54635913 | None:intergenic |
| GAAATTCGTTTGTTTGGATT+GGG | 0.339538 | 4_1:-54635912 | None:intergenic |
| TGCGGAATTCTTCAATGAAC+TGG | 0.345003 | 4_1:+54635702 | Msa0556430:CDS |
| TTCCACATACACGTGTTTCA+TGG | 0.348799 | 4_1:+54635889 | Msa0556430:CDS |
| TTAAACTCTAAAATATCATT+TGG | 0.369978 | 4_1:-54636289 | None:intergenic |
| CAGATCTTACCAAATGACTT+TGG | 0.384038 | 4_1:+54636103 | Msa0556430:intron |
| TGCGAGTTATAGATGTAGTT+TGG | 0.385150 | 4_1:-54635948 | None:intergenic |
| CAATGAACTGGATGAACAAT+GGG | 0.420513 | 4_1:+54635714 | Msa0556430:CDS |
| ACACAAACTATTGTTAAGAT+AGG | 0.424067 | 4_1:+54636226 | Msa0556430:CDS |
| AATATTACAATACTTAAAAC+AGG | 0.460074 | 4_1:-54636375 | None:intergenic |
| TCCCAATGATTCCCAACAAA+AGG | 0.467567 | 4_1:-54635806 | None:intergenic |
| CATTCTCATTTACGATTGTG+TGG | 0.506907 | 4_1:+54636148 | Msa0556430:CDS |
| AGTGATGAAATAAGGTCTGT+TGG | 0.517513 | 4_1:-54635554 | None:intergenic |
| CATTATGAATGAAAGGAAGA+TGG | 0.523264 | 4_1:-54635527 | None:intergenic |
| TTGTTAAGATAGGACGTAGC+TGG | 0.529092 | 4_1:+54636236 | Msa0556430:CDS |
| GGTTAAATACAACAATGTGT+TGG | 0.550805 | 4_1:-54635759 | None:intergenic |
| TCAATGAACTGGATGAACAA+TGG | 0.558244 | 4_1:+54635713 | Msa0556430:CDS |
| GGCCATGAAACACGTGTATG+TGG | 0.560867 | 4_1:-54635891 | None:intergenic |
| TGGAGTCCATTATGAATGAA+AGG | 0.569698 | 4_1:-54635534 | None:intergenic |
| GGAATGGTGATAATTAGTAA+TGG | 0.583941 | 4_1:-54636435 | None:intergenic |
| TCCAAACAAACGAATTTCCA+CGG | 0.596587 | 4_1:+54635917 | Msa0556430:CDS |
| GTAGTTTGGCTATGATACCG+TGG | 0.697972 | 4_1:-54635934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTATTTTTTAGCATAA+AGG | - | chr4_1:54636266-54636285 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTAGCATAA+AGG | - | chr4_1:54636266-54636285 | None:intergenic | 10.0% |
| !! | CTAAATATGTAAAAGATATT+AGG | - | chr4_1:54635858-54635877 | None:intergenic | 15.0% |
| !!! | CTAATATCTTTTACATATTT+AGG | + | chr4_1:54635856-54635875 | Msa0556430:CDS | 15.0% |
| !!! | TTAAACTCTAAAATATCATT+TGG | - | chr4_1:54636292-54636311 | None:intergenic | 15.0% |
| !! | AATATTACAATACTTAAAAC+AGG | - | chr4_1:54636378-54636397 | None:intergenic | 15.0% |
| !! | CTAAATATGTAAAAGATATT+AGG | - | chr4_1:54635858-54635877 | None:intergenic | 15.0% |
| !!! | CTAATATCTTTTACATATTT+AGG | + | chr4_1:54635856-54635875 | Msa0556430:CDS | 15.0% |
| !!! | TTAAACTCTAAAATATCATT+TGG | - | chr4_1:54636292-54636311 | None:intergenic | 15.0% |
| !! | AATATTACAATACTTAAAAC+AGG | - | chr4_1:54636378-54636397 | None:intergenic | 15.0% |
| !!! | TATAAGGCATTGTTAAAATT+TGG | - | chr4_1:54635783-54635802 | None:intergenic | 20.0% |
| !! | TACTATGAAATCAATGATTA+TGG | + | chr4_1:54635832-54635851 | Msa0556430:CDS | 20.0% |
| !!! | TATAAGGCATTGTTAAAATT+TGG | - | chr4_1:54635783-54635802 | None:intergenic | 20.0% |
| !! | TACTATGAAATCAATGATTA+TGG | + | chr4_1:54635832-54635851 | Msa0556430:CDS | 20.0% |
| ! | ATGCCTAATATTGATGAATT+TGG | + | chr4_1:54635991-54636010 | Msa0556430:CDS | 25.0% |
| ! | TGCCTAATATTGATGAATTT+GGG | + | chr4_1:54635992-54636011 | Msa0556430:CDS | 25.0% |
| !! | ACAACTGTCTTATATTTTTC+TGG | + | chr4_1:54636034-54636053 | Msa0556430:intron | 25.0% |
| ! | AAAAAAGATCCAAAGTCATT+TGG | - | chr4_1:54636115-54636134 | None:intergenic | 25.0% |
| ! | ACACAAACTATTGTTAAGAT+AGG | + | chr4_1:54636226-54636245 | Msa0556430:CDS | 25.0% |
| ! | ATGCCTAATATTGATGAATT+TGG | + | chr4_1:54635991-54636010 | Msa0556430:CDS | 25.0% |
| ! | TGCCTAATATTGATGAATTT+GGG | + | chr4_1:54635992-54636011 | Msa0556430:CDS | 25.0% |
| !! | ACAACTGTCTTATATTTTTC+TGG | + | chr4_1:54636034-54636053 | Msa0556430:intron | 25.0% |
| ! | AAAAAAGATCCAAAGTCATT+TGG | - | chr4_1:54636115-54636134 | None:intergenic | 25.0% |
| ! | ACACAAACTATTGTTAAGAT+AGG | + | chr4_1:54636226-54636245 | Msa0556430:CDS | 25.0% |
| CATTATGAATGAAAGGAAGA+TGG | - | chr4_1:54635530-54635549 | None:intergenic | 30.0% | |
| CATCTTCCTTTCATTCATAA+TGG | + | chr4_1:54635528-54635547 | Msa0556430:five_prime_UTR | 30.0% | |
| TTGCATACAGTGATGAAATA+AGG | - | chr4_1:54635565-54635584 | None:intergenic | 30.0% | |
| TCACTGTATGCAAAAAAATC+AGG | + | chr4_1:54635572-54635591 | Msa0556430:exon | 30.0% | |
| AAGAATTCCGCAATGAAAAT+TGG | - | chr4_1:54635694-54635713 | None:intergenic | 30.0% | |
| GGTTAAATACAACAATGTGT+TGG | - | chr4_1:54635762-54635781 | None:intergenic | 30.0% | |
| ! | TGCCTTATATTACCTTTTGT+TGG | + | chr4_1:54635794-54635813 | Msa0556430:CDS | 30.0% |
| ! | GCCTTATATTACCTTTTGTT+GGG | + | chr4_1:54635795-54635814 | Msa0556430:CDS | 30.0% |
| TCCCAACAAAAGGTAATATA+AGG | - | chr4_1:54635799-54635818 | None:intergenic | 30.0% | |
| GAAATTCGTTTGTTTGGATT+GGG | - | chr4_1:54635915-54635934 | None:intergenic | 30.0% | |
| GCATAAAAACCACAAAAGTT+GGG | - | chr4_1:54635975-54635994 | None:intergenic | 30.0% | |
| GTCCCAAATTCATCAATATT+AGG | - | chr4_1:54635997-54636016 | None:intergenic | 30.0% | |
| ! | TGATGAATTTGGGACAAAAT+TGG | + | chr4_1:54636002-54636021 | Msa0556430:CDS | 30.0% |
| !!! | GACTTTGGATCTTTTTTGAA+AGG | + | chr4_1:54636118-54636137 | Msa0556430:CDS | 30.0% |
| GTTTAAGTGTGACTCAATTA+TGG | + | chr4_1:54636306-54636325 | Msa0556430:CDS | 30.0% | |
| CATTATGAATGAAAGGAAGA+TGG | - | chr4_1:54635530-54635549 | None:intergenic | 30.0% | |
| CATCTTCCTTTCATTCATAA+TGG | + | chr4_1:54635528-54635547 | Msa0556430:five_prime_UTR | 30.0% | |
| TTGCATACAGTGATGAAATA+AGG | - | chr4_1:54635565-54635584 | None:intergenic | 30.0% | |
| TCACTGTATGCAAAAAAATC+AGG | + | chr4_1:54635572-54635591 | Msa0556430:exon | 30.0% | |
| AAGAATTCCGCAATGAAAAT+TGG | - | chr4_1:54635694-54635713 | None:intergenic | 30.0% | |
| GGTTAAATACAACAATGTGT+TGG | - | chr4_1:54635762-54635781 | None:intergenic | 30.0% | |
| ! | TGCCTTATATTACCTTTTGT+TGG | + | chr4_1:54635794-54635813 | Msa0556430:CDS | 30.0% |
| ! | GCCTTATATTACCTTTTGTT+GGG | + | chr4_1:54635795-54635814 | Msa0556430:CDS | 30.0% |
| TCCCAACAAAAGGTAATATA+AGG | - | chr4_1:54635799-54635818 | None:intergenic | 30.0% | |
| GAAATTCGTTTGTTTGGATT+GGG | - | chr4_1:54635915-54635934 | None:intergenic | 30.0% | |
| GCATAAAAACCACAAAAGTT+GGG | - | chr4_1:54635975-54635994 | None:intergenic | 30.0% | |
| GTCCCAAATTCATCAATATT+AGG | - | chr4_1:54635997-54636016 | None:intergenic | 30.0% | |
| ! | TGATGAATTTGGGACAAAAT+TGG | + | chr4_1:54636002-54636021 | Msa0556430:CDS | 30.0% |
| !!! | GACTTTGGATCTTTTTTGAA+AGG | + | chr4_1:54636118-54636137 | Msa0556430:CDS | 30.0% |
| GTTTAAGTGTGACTCAATTA+TGG | + | chr4_1:54636306-54636325 | Msa0556430:CDS | 30.0% | |
| TGGAGTCCATTATGAATGAA+AGG | - | chr4_1:54635537-54635556 | None:intergenic | 35.0% | |
| AGTGATGAAATAAGGTCTGT+TGG | - | chr4_1:54635557-54635576 | None:intergenic | 35.0% | |
| ! | GCTTGATCCAATTTTCATTG+CGG | + | chr4_1:54635684-54635703 | Msa0556430:CDS | 35.0% |
| TCAATGAACTGGATGAACAA+TGG | + | chr4_1:54635713-54635732 | Msa0556430:CDS | 35.0% | |
| CAATGAACTGGATGAACAAT+GGG | + | chr4_1:54635714-54635733 | Msa0556430:CDS | 35.0% | |
| ! | TACCTTTTGTTGGGAATCAT+TGG | + | chr4_1:54635804-54635823 | Msa0556430:CDS | 35.0% |
| ! | ACCTTTTGTTGGGAATCATT+GGG | + | chr4_1:54635805-54635824 | Msa0556430:CDS | 35.0% |
| GGAAATTCGTTTGTTTGGAT+TGG | - | chr4_1:54635916-54635935 | None:intergenic | 35.0% | |
| TCCAAACAAACGAATTTCCA+CGG | + | chr4_1:54635917-54635936 | Msa0556430:CDS | 35.0% | |
| TGCGAGTTATAGATGTAGTT+TGG | - | chr4_1:54635951-54635970 | None:intergenic | 35.0% | |
| GGCATAAAAACCACAAAAGT+TGG | - | chr4_1:54635976-54635995 | None:intergenic | 35.0% | |
| GATCTGCAAGAAGGAAAAAA+TGG | - | chr4_1:54636089-54636108 | None:intergenic | 35.0% | |
| ATTTGGTAAGATCTGCAAGA+AGG | - | chr4_1:54636098-54636117 | None:intergenic | 35.0% | |
| CAGATCTTACCAAATGACTT+TGG | + | chr4_1:54636103-54636122 | Msa0556430:intron | 35.0% | |
| CATTCTCATTTACGATTGTG+TGG | + | chr4_1:54636148-54636167 | Msa0556430:CDS | 35.0% | |
| TGGAGTCCATTATGAATGAA+AGG | - | chr4_1:54635537-54635556 | None:intergenic | 35.0% | |
| AGTGATGAAATAAGGTCTGT+TGG | - | chr4_1:54635557-54635576 | None:intergenic | 35.0% | |
| ! | GCTTGATCCAATTTTCATTG+CGG | + | chr4_1:54635684-54635703 | Msa0556430:CDS | 35.0% |
| TCAATGAACTGGATGAACAA+TGG | + | chr4_1:54635713-54635732 | Msa0556430:CDS | 35.0% | |
| CAATGAACTGGATGAACAAT+GGG | + | chr4_1:54635714-54635733 | Msa0556430:CDS | 35.0% | |
| ! | TACCTTTTGTTGGGAATCAT+TGG | + | chr4_1:54635804-54635823 | Msa0556430:CDS | 35.0% |
| ! | ACCTTTTGTTGGGAATCATT+GGG | + | chr4_1:54635805-54635824 | Msa0556430:CDS | 35.0% |
| GGAAATTCGTTTGTTTGGAT+TGG | - | chr4_1:54635916-54635935 | None:intergenic | 35.0% | |
| TCCAAACAAACGAATTTCCA+CGG | + | chr4_1:54635917-54635936 | Msa0556430:CDS | 35.0% | |
| TGCGAGTTATAGATGTAGTT+TGG | - | chr4_1:54635951-54635970 | None:intergenic | 35.0% | |
| GGCATAAAAACCACAAAAGT+TGG | - | chr4_1:54635976-54635995 | None:intergenic | 35.0% | |
| GATCTGCAAGAAGGAAAAAA+TGG | - | chr4_1:54636089-54636108 | None:intergenic | 35.0% | |
| ATTTGGTAAGATCTGCAAGA+AGG | - | chr4_1:54636098-54636117 | None:intergenic | 35.0% | |
| CAGATCTTACCAAATGACTT+TGG | + | chr4_1:54636103-54636122 | Msa0556430:intron | 35.0% | |
| CATTCTCATTTACGATTGTG+TGG | + | chr4_1:54636148-54636167 | Msa0556430:CDS | 35.0% | |
| TGCGGAATTCTTCAATGAAC+TGG | + | chr4_1:54635702-54635721 | Msa0556430:CDS | 40.0% | |
| TCCCAATGATTCCCAACAAA+AGG | - | chr4_1:54635809-54635828 | None:intergenic | 40.0% | |
| TTCCACATACACGTGTTTCA+TGG | + | chr4_1:54635889-54635908 | Msa0556430:CDS | 40.0% | |
| ACCGTGGAAATTCGTTTGTT+TGG | - | chr4_1:54635921-54635940 | None:intergenic | 40.0% | |
| TTGTTAAGATAGGACGTAGC+TGG | + | chr4_1:54636236-54636255 | Msa0556430:CDS | 40.0% | |
| TGCGGAATTCTTCAATGAAC+TGG | + | chr4_1:54635702-54635721 | Msa0556430:CDS | 40.0% | |
| TCCCAATGATTCCCAACAAA+AGG | - | chr4_1:54635809-54635828 | None:intergenic | 40.0% | |
| TTCCACATACACGTGTTTCA+TGG | + | chr4_1:54635889-54635908 | Msa0556430:CDS | 40.0% | |
| ACCGTGGAAATTCGTTTGTT+TGG | - | chr4_1:54635921-54635940 | None:intergenic | 40.0% | |
| TTGTTAAGATAGGACGTAGC+TGG | + | chr4_1:54636236-54636255 | Msa0556430:CDS | 40.0% | |
| GTAGTTTGGCTATGATACCG+TGG | - | chr4_1:54635937-54635956 | None:intergenic | 45.0% | |
| ! | AACTCGCAACCCAACTTTTG+TGG | + | chr4_1:54635963-54635982 | Msa0556430:CDS | 45.0% |
| GTAGTTTGGCTATGATACCG+TGG | - | chr4_1:54635937-54635956 | None:intergenic | 45.0% | |
| ! | AACTCGCAACCCAACTTTTG+TGG | + | chr4_1:54635963-54635982 | Msa0556430:CDS | 45.0% |
| GATCAAGCTCAGCACTCATC+TGG | - | chr4_1:54635672-54635691 | None:intergenic | 50.0% | |
| GGCCATGAAACACGTGTATG+TGG | - | chr4_1:54635894-54635913 | None:intergenic | 50.0% | |
| GATCAAGCTCAGCACTCATC+TGG | - | chr4_1:54635672-54635691 | None:intergenic | 50.0% | |
| GGCCATGAAACACGTGTATG+TGG | - | chr4_1:54635894-54635913 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54635510 | 54636443 | 54635510 | ID=Msa0556430;Name=Msa0556430 |
| chr4_1 | mRNA | 54635510 | 54636443 | 54635510 | ID=Msa0556430-mRNA-1;Parent=Msa0556430;Name=Msa0556430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69|1|1|1|0|0|3|59|214 |
| chr4_1 | exon | 54635510 | 54635593 | 54635510 | ID=Msa0556430-mRNA-1:exon:16088;Parent=Msa0556430-mRNA-1 |
| chr4_1 | exon | 54635673 | 54636023 | 54635673 | ID=Msa0556430-mRNA-1:exon:16089;Parent=Msa0556430-mRNA-1 |
| chr4_1 | exon | 54636106 | 54636443 | 54636106 | ID=Msa0556430-mRNA-1:exon:16090;Parent=Msa0556430-mRNA-1 |
| chr4_1 | five_prime_UTR | 54635510 | 54635578 | 54635510 | ID=Msa0556430-mRNA-1:five_prime_utr;Parent=Msa0556430-mRNA-1 |
| chr4_1 | CDS | 54635579 | 54635593 | 54635579 | ID=Msa0556430-mRNA-1:cds;Parent=Msa0556430-mRNA-1 |
| chr4_1 | CDS | 54635673 | 54636023 | 54635673 | ID=Msa0556430-mRNA-1:cds;Parent=Msa0556430-mRNA-1 |
| chr4_1 | CDS | 54636106 | 54636384 | 54636106 | ID=Msa0556430-mRNA-1:cds;Parent=Msa0556430-mRNA-1 |
| chr4_1 | three_prime_UTR | 54636385 | 54636443 | 54636385 | ID=Msa0556430-mRNA-1:three_prime_utr;Parent=Msa0556430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
