AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0783160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783160 MtrunA17_Chr5g0438851 89.444 180 17 2 1 179 1 179 2.02e-109 310
Msa0783160 MtrunA17_Chr5g0438841 67.630 173 48 3 5 174 3 170 1.46e-67 203
Msa0783160 MtrunA17_Chr2g0316931 62.353 85 27 2 9 88 22 106 2.45e-25 97.1
Msa0783160 MtrunA17_Chr5g0438801 76.190 63 14 1 14 75 47 109 2.75e-25 98.6
Msa0783160 MtrunA17_Chr5g0438831 65.333 75 24 2 2 75 31 104 3.28e-25 98.6
Msa0783160 MtrunA17_Chr3g0099871 35.961 203 84 7 14 170 23 225 1.13e-22 90.5
Msa0783160 MtrunA17_Chr2g0282621 67.188 64 20 1 11 73 8 71 5.41e-21 84.7
Msa0783160 MtrunA17_Chr2g0282651 65.152 66 22 1 11 75 63 128 6.27e-21 86.7
Msa0783160 MtrunA17_Chr8g0383591 41.593 113 63 2 17 128 144 254 5.69e-20 85.1
Msa0783160 MtrunA17_Chr2g0297331 62.319 69 24 2 10 76 6 74 2.51e-19 79.3
Msa0783160 MtrunA17_Chr1g0186731 58.571 70 27 2 9 76 12 81 8.23e-19 78.6
Msa0783160 MtrunA17_Chr8g0367911 65.574 61 20 1 16 75 42 102 3.28e-18 79.7
Msa0783160 MtrunA17_Chr1g0184081 62.121 66 23 2 14 77 17 82 6.31e-18 76.3
Msa0783160 MtrunA17_Chr7g0221471 52.500 80 37 1 8 86 41 120 1.03e-17 76.3
Msa0783160 MtrunA17_Chr4g0044881 52.439 82 35 2 13 93 109 187 5.52e-17 75.9
Msa0783160 MtrunA17_Chr7g0221501 55.224 67 29 1 8 73 41 107 5.93e-17 74.3
Msa0783160 MtrunA17_Chr1g0158971 57.143 70 27 2 15 81 112 181 7.40e-17 76.6
Msa0783160 MtrunA17_Chr4g0003421 50.633 79 38 1 8 85 30 108 9.02e-17 75.5
Msa0783160 MtrunA17_Chr5g0412641 63.934 61 21 1 16 75 44 104 1.13e-16 76.3
Msa0783160 MtrunA17_Chr8g0387801 38.017 121 63 2 17 125 106 226 1.72e-16 75.5
Msa0783160 MtrunA17_Chr4g0055781 53.333 75 33 2 13 85 97 171 1.93e-16 74.3
Msa0783160 MtrunA17_Chr4g0044871 63.793 58 20 1 18 74 96 153 2.79e-16 73.6
Msa0783160 MtrunA17_Chr4g0044911 63.793 58 20 1 18 74 96 153 3.24e-16 73.6
Msa0783160 MtrunA17_Chr2g0283181 61.765 68 24 2 15 80 146 213 4.05e-16 74.3
Msa0783160 MtrunA17_Chr4g0044901 63.793 58 20 1 18 74 96 153 4.40e-16 73.2
Msa0783160 MtrunA17_Chr1g0170531 45.556 90 47 2 4 91 75 164 5.52e-16 72.8
Msa0783160 MtrunA17_Chr4g0063751 59.322 59 23 1 17 74 6 64 1.56e-15 71.2
Msa0783160 MtrunA17_Chr8g0335311 51.136 88 39 3 17 100 95 182 2.08e-15 70.9
Msa0783160 MtrunA17_Chr2g0286161 53.521 71 32 1 10 79 42 112 2.11e-15 72.4
Msa0783160 MtrunA17_Chr4g0055801 55.882 68 28 2 12 77 148 215 2.18e-15 72.4
Msa0783160 MtrunA17_Chr1g0186681 52.174 69 30 2 12 77 13 81 2.69e-15 68.9
Msa0783160 MtrunA17_Chr1g0200931 48.000 75 37 2 4 76 9 83 3.38e-15 68.9
Msa0783160 MtrunA17_Chr2g0333011 57.627 59 24 1 17 74 6 64 4.98e-15 69.3
Msa0783160 MtrunA17_Chr1g0186671 52.857 70 31 2 10 77 11 80 5.97e-15 68.2
Msa0783160 MtrunA17_Chr7g0261151 59.677 62 23 2 14 73 16 77 6.09e-15 68.2
Msa0783160 MtrunA17_Chr3g0126321 55.000 60 26 1 17 75 112 171 8.34e-15 70.9
Msa0783160 MtrunA17_Chr6g0486701 59.649 57 22 1 18 73 44 100 8.71e-15 69.3
Msa0783160 MtrunA17_Chr8g0344961 52.857 70 32 1 5 73 111 180 8.87e-15 71.2
Msa0783160 MtrunA17_Chr2g0334031 52.857 70 32 1 5 73 104 173 9.56e-15 70.9
Msa0783160 MtrunA17_Chr8g0375031 41.593 113 54 3 3 104 111 222 1.07e-14 69.3
Msa0783160 MtrunA17_Chr5g0396911 58.333 60 24 1 17 75 111 170 1.37e-14 70.1
Msa0783160 MtrunA17_Chr2g0331231 57.895 57 23 1 18 73 41 97 1.47e-14 68.6
Msa0783160 MtrunA17_Chr7g0261101 53.333 75 32 3 2 73 3 77 1.53e-14 67.4
Msa0783160 MtrunA17_Chr8g0334801 59.649 57 22 1 18 73 52 108 1.55e-14 68.6
Msa0783160 MtrunA17_Chr4g0046161 50.667 75 34 3 8 79 46 120 1.56e-14 66.6
Msa0783160 MtrunA17_Chr8g0335331 56.923 65 26 2 11 73 118 182 1.64e-14 68.6
Msa0783160 MtrunA17_Chr4g0066931 61.404 57 21 1 17 72 52 108 1.74e-14 70.1
Msa0783160 MtrunA17_Chr1g0183961 61.111 72 26 2 15 84 24 95 1.75e-14 67.4
Msa0783160 MtrunA17_Chr2g0301191 57.895 57 23 1 18 73 19 75 2.84e-14 68.2
Msa0783160 MtrunA17_Chr4g0055761 50.617 81 37 3 2 79 128 208 3.05e-14 68.6
Msa0783160 MtrunA17_Chr2g0283171 52.000 75 33 3 10 82 56 129 3.17e-14 66.6
Msa0783160 MtrunA17_Chr8g0340311 54.098 61 27 1 14 73 43 103 3.56e-14 67.4
Msa0783160 MtrunA17_Chr5g0432821 53.448 58 26 1 18 74 124 181 3.62e-14 68.6
Msa0783160 MtrunA17_Chr2g0301171 48.000 75 35 2 3 73 1 75 4.11e-14 67.4
Msa0783160 MtrunA17_Chr6g0473741 50.000 78 28 3 14 80 59 136 4.33e-14 67.8
Msa0783160 MtrunA17_Chr1g0184061 61.017 59 21 2 18 74 77 135 5.04e-14 67.4
Msa0783160 MtrunA17_Chr3g0140161 52.308 65 30 1 10 73 35 99 5.15e-14 67.0
Msa0783160 MtrunA17_Chr7g0232261 51.429 70 33 1 5 73 48 117 5.44e-14 67.8
Msa0783160 MtrunA17_Chr7g0225131 57.143 56 22 1 18 73 29 82 6.59e-14 64.3
Msa0783160 MtrunA17_Chr8g0335321 45.882 85 37 3 17 99 95 172 7.14e-14 67.0
Msa0783160 MtrunA17_Chr1g0150671 47.297 74 37 2 11 82 39 112 9.46e-14 67.4
Msa0783160 MtrunA17_Chr2g0295421 56.923 65 26 2 10 73 89 152 1.10e-13 67.0
Msa0783160 MtrunA17_Chr1g0150691 57.895 57 23 1 18 73 22 78 1.28e-13 66.2
Msa0783160 MtrunA17_Chr1g0196871 59.322 59 22 2 18 74 16 74 1.33e-13 63.5
Msa0783160 MtrunA17_Chr7g0250731 51.899 79 33 3 17 93 60 135 1.50e-13 65.9
Msa0783160 MtrunA17_Chr1g0150631 57.895 57 23 1 18 73 38 94 1.83e-13 66.2
Msa0783160 MtrunA17_Chr7g0252381 63.158 57 20 1 17 72 41 97 1.85e-13 66.6
Msa0783160 MtrunA17_Chr7g0265851 45.000 80 40 2 11 89 17 93 1.89e-13 65.5
Msa0783160 MtrunA17_Chr7g0261181 56.579 76 31 2 7 80 2 77 2.08e-13 63.9
Msa0783160 MtrunA17_Chr7g0250711 52.113 71 32 2 17 85 59 129 2.14e-13 65.5
Msa0783160 MtrunA17_Chr1g0195151 59.649 57 22 1 18 73 77 133 2.15e-13 66.6
Msa0783160 MtrunA17_Chr1g0150661 56.140 57 24 1 18 73 35 91 2.36e-13 65.9
Msa0783160 MtrunA17_Chr8g0390091 56.140 57 24 1 18 73 37 93 3.47e-13 65.5
Msa0783160 MtrunA17_Chr1g0183981 59.322 59 22 2 18 74 75 133 3.49e-13 65.1
Msa0783160 MtrunA17_Chr1g0184011 59.649 57 21 2 20 74 86 142 4.15e-13 65.1
Msa0783160 MtrunA17_Chr6g0473931 48.387 93 32 4 14 90 26 118 4.31e-13 64.7
Msa0783160 MtrunA17_Chr6g0453661 50.000 74 34 2 2 72 20 93 5.47e-13 65.9
Msa0783160 MtrunA17_Chr1g0184031 57.627 59 23 2 18 74 84 142 5.49e-13 64.7
Msa0783160 MtrunA17_Chr6g0473961 41.818 110 44 5 14 103 47 156 6.64e-13 64.3
Msa0783160 MtrunA17_Chr7g0250721 59.322 59 22 2 17 73 60 118 6.95e-13 64.3
Msa0783160 MtrunA17_Chr7g0217991 56.061 66 26 2 8 72 34 97 7.56e-13 65.9
Msa0783160 MtrunA17_Chr6g0473981 47.126 87 33 4 14 89 47 131 7.74e-13 64.7
Msa0783160 MtrunA17_Chr4g0002631 51.389 72 32 2 17 87 7 76 8.99e-13 63.5
Msa0783160 MtrunA17_Chr6g0473881 52.055 73 24 3 14 75 103 175 9.63e-13 65.1
Msa0783160 MtrunA17_Chr6g0473941 51.316 76 26 3 14 78 26 101 1.05e-12 63.5
Msa0783160 MtrunA17_Chr5g0399441 53.226 62 28 1 13 73 23 84 1.20e-12 63.2
Msa0783160 MtrunA17_Chr7g0275841 43.836 73 40 1 2 73 12 84 1.25e-12 62.8
Msa0783160 MtrunA17_Chr2g0301181 47.297 74 35 2 4 73 2 75 1.27e-12 63.9
Msa0783160 MtrunA17_Chr1g0203861 57.143 56 23 1 18 72 44 99 1.54e-12 63.2
Msa0783160 MtrunA17_Chr6g0473781 55.556 63 24 2 14 72 50 112 1.58e-12 63.5
Msa0783160 MtrunA17_Chr8g0378811 56.140 57 24 1 17 72 54 110 1.94e-12 63.9
Msa0783160 MtrunA17_Chr6g0473861 49.296 71 28 2 18 80 63 133 2.19e-12 63.5
Msa0783160 MtrunA17_Chr4g0057241 48.214 56 29 0 18 73 15 70 2.29e-12 62.0
Msa0783160 MtrunA17_Chr2g0324131 57.895 57 23 1 18 73 218 274 2.33e-12 64.3
Msa0783160 MtrunA17_Chr3g0137174 56.452 62 24 2 17 77 7 66 2.39e-12 62.4
Msa0783160 MtrunA17_Chr1g0184071 52.857 70 30 3 8 74 58 127 2.54e-12 62.0
Msa0783160 MtrunA17_Chr4g0055951 52.632 57 26 1 18 73 74 130 2.60e-12 63.2
Msa0783160 MtrunA17_Chr3g0134161 50.000 70 28 2 5 73 38 101 4.66e-12 61.2
Msa0783160 MtrunA17_Chr3g0115631 57.895 57 23 1 18 73 150 206 4.68e-12 63.2
Msa0783160 MtrunA17_Chr1g0186701 45.070 71 30 1 7 77 8 69 5.10e-12 60.1
Msa0783160 MtrunA17_Chr8g0382491 56.140 57 24 1 18 73 113 169 7.41e-12 62.4
Msa0783160 MtrunA17_Chr4g0017851 50.877 57 27 1 18 73 118 174 7.59e-12 62.4
Msa0783160 MtrunA17_Chr8g0350701 54.237 59 26 1 17 74 26 84 8.50e-12 62.4
Msa0783160 MtrunA17_Chr4g0062551 48.438 64 32 1 11 73 46 109 8.52e-12 60.1
Msa0783160 MtrunA17_Chr5g0425561 57.895 57 23 1 18 73 173 229 9.86e-12 62.4
Msa0783160 MtrunA17_Chr2g0321071 36.134 119 59 6 18 126 47 158 1.24e-11 61.2
Msa0783160 MtrunA17_Chr6g0474001 44.828 87 35 4 14 89 47 131 1.25e-11 61.6
Msa0783160 MtrunA17_Chr4g0026881 55.172 58 24 2 18 73 97 154 1.29e-11 61.2
Msa0783160 MtrunA17_Chr8g0346741 50.877 57 27 1 18 73 39 95 1.64e-11 60.1
Msa0783160 MtrunA17_Chr4g0062161 50.000 62 30 1 13 73 48 109 1.65e-11 60.5
Msa0783160 MtrunA17_Chr4g0073521 48.333 60 29 1 17 74 149 208 1.70e-11 61.6
Msa0783160 MtrunA17_Chr4g0026931 56.140 57 23 2 19 73 132 188 1.71e-11 61.2
Msa0783160 MtrunA17_Chr5g0401871 40.449 89 51 2 15 101 22 110 1.74e-11 60.1
Msa0783160 MtrunA17_Chr6g0473971 49.315 73 26 3 14 75 47 119 2.00e-11 60.8
Msa0783160 MtrunA17_Chr7g0216601 46.667 60 30 1 17 74 170 229 2.09e-11 61.6
Msa0783160 MtrunA17_Chr7g0257911 40.909 88 48 2 18 104 31 115 2.23e-11 60.8
Msa0783160 MtrunA17_Chr3g0136551 50.847 59 28 1 15 72 62 120 2.85e-11 60.5
Msa0783160 MtrunA17_Chr4g0002011 46.774 62 31 1 17 76 141 202 2.91e-11 60.8
Msa0783160 MtrunA17_Chr1g0170471 57.143 49 20 1 27 74 93 141 3.60e-11 58.9
Msa0783160 MtrunA17_Chr7g0253424 52.632 57 26 1 17 72 38 94 3.96e-11 60.1
Msa0783160 MtrunA17_Chr1g0153151 52.632 57 26 1 18 73 44 100 4.89e-11 58.5
Msa0783160 MtrunA17_Chr4g0042761 54.237 59 26 1 17 74 47 105 5.32e-11 60.1
Msa0783160 MtrunA17_Chr6g0452911 43.038 79 43 1 17 93 173 251 5.33e-11 60.1
Msa0783160 MtrunA17_Chr6g0461271 43.836 73 39 2 1 72 17 88 5.66e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783160 AT5G44210.1 41.071 168 72 5 14 154 29 196 3.21e-24 94.4
Msa0783160 AT1G53170.1 44.910 167 66 5 9 154 22 183 5.26e-24 93.2
Msa0783160 AT1G28370.1 40.373 161 81 5 6 155 8 164 1.51e-23 91.7
Msa0783160 AT1G28370.2 40.373 161 81 5 6 155 46 202 1.77e-23 92.4
Msa0783160 AT3G15210.1 74.194 62 15 1 13 73 20 81 6.50e-23 91.3
Msa0783160 AT1G50640.1 66.154 65 21 1 11 74 21 85 3.75e-22 89.4
Msa0783160 AT1G03800.1 65.079 63 21 1 13 74 48 110 4.09e-22 89.7
Msa0783160 AT1G28360.1 65.625 64 21 1 13 75 7 70 7.14e-22 87.8
Msa0783160 AT5G43410.1 58.904 73 28 2 12 82 9 81 7.57e-19 78.6
Msa0783160 AT3G20310.1 63.077 65 23 1 11 74 20 84 2.25e-18 80.1
Msa0783160 AT5G61600.1 65.000 60 19 2 17 74 87 146 7.77e-18 78.6
Msa0783160 AT2G33710.2 60.606 66 25 1 9 73 61 126 7.81e-18 78.2
Msa0783160 AT2G33710.1 60.606 66 25 1 9 73 61 126 8.29e-18 77.8
Msa0783160 AT5G51190.1 43.636 110 53 3 17 117 71 180 1.12e-17 77.8
Msa0783160 AT1G12980.1 60.606 66 25 1 11 75 50 115 1.59e-17 79.0
Msa0783160 AT1G24590.1 65.574 61 20 1 16 75 56 116 6.27e-17 77.0
Msa0783160 AT4G11140.1 46.237 93 46 2 17 105 86 178 2.01e-16 75.5
Msa0783160 AT5G13330.1 44.554 101 47 2 4 95 17 117 2.33e-16 73.9
Msa0783160 AT5G61890.1 39.474 114 51 3 17 127 89 187 3.40e-16 74.3
Msa0783160 AT4G23750.2 57.377 61 25 1 15 74 119 179 6.13e-16 74.7
Msa0783160 AT4G23750.1 57.377 61 25 1 15 74 119 179 6.13e-16 74.7
Msa0783160 AT1G28160.1 52.381 84 35 3 14 92 35 118 9.21e-16 72.8
Msa0783160 AT3G23230.1 56.923 65 26 2 14 76 16 80 1.15e-15 70.5
Msa0783160 AT1G15360.1 54.839 62 27 1 17 77 6 67 1.20e-15 71.6
Msa0783160 AT1G15360.2 54.839 62 27 1 17 77 6 67 1.20e-15 71.6
Msa0783160 AT5G47230.1 47.778 90 43 3 5 90 141 230 2.08e-15 72.8
Msa0783160 AT4G27950.1 52.308 65 30 1 11 74 111 175 2.63e-15 72.8
Msa0783160 AT4G17500.1 54.930 71 30 2 11 79 141 211 3.50e-15 71.6
Msa0783160 AT2G47520.1 61.404 57 21 1 18 73 50 106 3.77e-15 69.7
Msa0783160 AT5G47220.1 52.778 72 32 2 10 79 109 180 4.91e-15 70.9
Msa0783160 AT1G74930.1 50.000 68 33 1 7 73 10 77 5.05e-15 70.1
Msa0783160 AT5G25390.2 52.941 68 30 2 17 82 6 73 8.48e-15 69.3
Msa0783160 AT5G53290.1 55.932 59 25 1 17 74 124 182 1.18e-14 70.9
Msa0783160 AT5G25810.1 53.846 65 29 1 10 73 28 92 1.20e-14 69.3
Msa0783160 AT4G32800.1 53.030 66 30 1 9 73 10 75 1.24e-14 69.3
Msa0783160 AT1G12890.1 46.237 93 44 3 9 97 12 102 1.33e-14 69.3
Msa0783160 AT5G18560.1 43.878 98 52 3 17 112 54 150 1.41e-14 70.9
Msa0783160 AT3G61630.1 53.030 66 30 1 11 75 98 163 1.67e-14 70.5
Msa0783160 AT5G13910.1 53.623 69 31 1 5 72 7 75 2.64e-14 68.6
Msa0783160 AT1G19210.1 53.125 64 29 1 11 73 5 68 2.69e-14 67.8
Msa0783160 AT2G46310.1 55.738 61 26 1 16 75 97 157 4.14e-14 68.9
Msa0783160 AT1G71450.1 56.140 57 24 1 18 73 24 80 6.36e-14 67.0
Msa0783160 AT5G11590.1 48.750 80 33 2 2 73 28 107 8.51e-14 67.4
Msa0783160 AT3G16770.1 61.404 57 21 1 18 73 79 135 1.00e-13 67.4
Msa0783160 AT4G17490.1 57.576 66 25 3 12 74 130 195 1.03e-13 67.8
Msa0783160 AT1G72360.1 56.897 58 24 1 17 73 24 81 1.08e-13 66.6
Msa0783160 AT5G64750.1 65.957 47 16 0 27 73 195 241 1.30e-13 68.2
Msa0783160 AT2G35700.1 51.613 62 29 1 13 73 40 101 1.39e-13 66.2
Msa0783160 AT2G25820.1 57.895 57 23 1 18 73 26 82 1.42e-13 66.6
Msa0783160 AT2G44840.1 58.065 62 24 2 14 73 88 149 1.51e-13 66.6
Msa0783160 AT4G16750.1 48.485 66 33 1 9 73 31 96 1.57e-13 65.9
Msa0783160 AT2G44940.1 57.895 57 23 1 18 73 100 156 1.79e-13 67.4
Msa0783160 AT1G72360.2 56.897 58 24 1 17 73 75 132 2.39e-13 66.6
Msa0783160 AT1G72360.3 56.897 58 24 1 17 73 73 130 2.51e-13 66.6
Msa0783160 AT5G07580.1 50.000 72 34 2 5 74 97 168 2.65e-13 65.9
Msa0783160 AT5G25390.1 51.471 68 28 3 17 82 6 70 2.83e-13 65.1
Msa0783160 AT3G16280.1 54.386 57 25 1 18 73 61 117 5.04e-13 65.5
Msa0783160 AT3G60490.1 56.140 57 24 1 18 73 71 127 5.18e-13 65.5
Msa0783160 AT4G06746.1 50.794 63 30 1 12 73 30 92 5.54e-13 63.5
Msa0783160 AT4G28140.1 56.140 57 24 1 18 73 143 199 5.59e-13 65.9
Msa0783160 AT5G19790.1 52.308 65 30 1 9 72 13 77 5.90e-13 65.5
Msa0783160 AT4G25470.1 57.143 56 23 1 18 72 51 106 6.37e-13 64.7
Msa0783160 AT2G36450.1 41.667 72 40 1 4 73 1 72 7.09e-13 63.9
Msa0783160 AT1G36060.1 51.389 72 33 2 18 87 143 214 7.51e-13 65.9
Msa0783160 AT3G16280.2 54.386 57 25 1 18 73 79 135 7.59e-13 65.1
Msa0783160 AT4G13620.1 59.649 57 22 1 18 73 232 288 9.32e-13 65.9
Msa0783160 AT1G22190.1 56.923 65 26 2 11 73 75 139 9.94e-13 64.7
Msa0783160 AT5G25190.1 48.718 78 34 2 17 88 7 84 1.04e-12 63.5
Msa0783160 AT3G50260.1 41.667 84 46 2 4 84 7 90 1.05e-12 63.2
Msa0783160 AT4G25490.1 55.357 56 24 1 18 72 48 103 1.14e-12 63.9
Msa0783160 AT4G25480.1 55.357 56 24 1 18 72 51 106 1.18e-12 63.9
Msa0783160 AT4G39780.1 52.308 65 30 1 10 73 85 149 1.68e-12 64.3
Msa0783160 AT4G31060.1 54.386 57 25 1 18 73 27 83 1.81e-12 63.2
Msa0783160 AT1G04370.1 61.972 71 25 2 13 81 15 85 2.07e-12 61.6
Msa0783160 AT3G23240.1 54.688 64 27 2 11 72 75 138 2.34e-12 63.2
Msa0783160 AT5G65130.2 56.140 57 24 1 18 73 113 169 3.19e-12 63.5
Msa0783160 AT5G65130.1 56.140 57 24 1 18 73 111 167 3.27e-12 63.5
Msa0783160 AT2G22200.1 56.140 57 24 1 18 73 71 127 3.33e-12 63.5
Msa0783160 AT2G20880.1 56.140 57 24 1 18 73 187 243 4.67e-12 63.5
Msa0783160 AT1G01250.1 47.059 68 35 1 7 73 34 101 6.86e-12 61.6
Msa0783160 AT1G78080.1 57.895 57 23 1 18 73 152 208 6.97e-12 63.2
Msa0783160 AT2G31230.1 53.521 71 30 3 7 74 74 144 7.36e-12 62.4
Msa0783160 AT1G46768.1 52.632 57 26 1 18 73 31 87 7.72e-12 60.8
Msa0783160 AT1G46768.2 52.632 57 26 1 18 73 31 87 7.72e-12 60.8
Msa0783160 AT1G46768.3 52.632 57 26 1 18 73 31 87 8.78e-12 60.1
Msa0783160 AT5G51990.1 53.571 56 25 1 18 72 54 109 9.81e-12 61.6
Msa0783160 AT5G21960.1 53.448 58 26 1 17 73 6 63 1.09e-11 61.6
Msa0783160 AT4G36900.1 52.632 57 26 1 18 73 30 86 1.11e-11 61.2
Msa0783160 AT2G23340.1 32.258 155 83 6 18 162 28 170 1.77e-11 60.1
Msa0783160 AT1G71130.1 45.570 79 37 2 3 75 64 142 2.12e-11 59.7
Msa0783160 AT1G63030.2 50.794 63 27 2 14 72 23 85 2.70e-11 59.7
Msa0783160 AT1G63030.1 50.794 63 27 2 14 72 23 85 2.70e-11 59.7
Msa0783160 AT3G57600.1 39.326 89 51 2 17 104 27 113 3.84e-11 60.5
Msa0783160 AT2G40340.2 33.099 142 83 5 18 151 14 151 4.27e-11 60.5
Msa0783160 AT2G40340.5 33.099 142 83 5 18 151 14 151 4.27e-11 60.5
Msa0783160 AT2G40340.4 33.099 142 83 5 18 151 14 151 4.27e-11 60.5
Msa0783160 AT4G18450.1 53.030 66 28 3 12 74 104 169 4.39e-11 60.5
Msa0783160 AT5G67190.1 52.632 57 26 1 18 73 21 77 4.53e-11 59.3
Msa0783160 AT2G40340.1 33.099 142 83 5 18 151 72 209 5.43e-11 60.5
Msa0783160 AT1G68550.1 56.000 50 21 1 20 68 115 164 6.20e-11 60.5
Msa0783160 AT1G68550.2 56.000 50 21 1 20 68 115 164 6.20e-11 60.5
Msa0783160 AT2G40340.6 33.099 142 83 5 18 151 79 216 6.27e-11 60.5

Find 42 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCAACCATTGTTTCT+AGG 0.157875 5_2:+66972218 Msa0783160:CDS
TCTTCATCGTCATTGAAATT+TGG 0.174328 5_2:-66972397 None:intergenic
AGACCTGTTGTTGCTGTTGA+AGG 0.328034 5_2:+66972259 Msa0783160:CDS
AAATTGAGATCAATGTTTAA+AGG 0.377276 5_2:-66972364 None:intergenic
TTCTTCAACCATTGTTTCTA+GGG 0.392078 5_2:+66972219 Msa0783160:CDS
GTAGAAGCATTGTAAGGTAT+TGG 0.399183 5_2:-66972151 None:intergenic
GGATCAATTGAAAGCAGAAC+TGG 0.417674 5_2:+66971937 Msa0783160:CDS
TAGAAGCATTGTAAGGTATT+GGG 0.419441 5_2:-66972150 None:intergenic
GTAGTACTGCTGAAGCATCT+AGG 0.462215 5_2:+66972182 Msa0783160:CDS
TCATCGTCATTGAAATTTGG+TGG 0.466889 5_2:-66972394 None:intergenic
GAAGCATCTAGGGTTGTTGT+TGG 0.473611 5_2:+66972193 Msa0783160:CDS
ATGAGATCGGTCTTCATTGG+CGG 0.475602 5_2:-66972465 None:intergenic
TCATTGAAATTTGGTGGAGG+GGG 0.492767 5_2:-66972388 None:intergenic
CAACCTTCAACAGCAACAAC+AGG 0.494426 5_2:-66972262 None:intergenic
GCTTCCTCACGCCGCGATAA+CGG 0.494924 5_2:-66971982 None:intergenic
AAGTGAGAGGCACAAGGTAG+TGG 0.502459 5_2:-66972428 None:intergenic
TGCTGCTGCATCATAAGCTC+GGG 0.507532 5_2:-66972092 None:intergenic
AGGTATTGGGAAGTTTGTAA+TGG 0.509964 5_2:-66972137 None:intergenic
TAGTACTGCTGAAGCATCTA+GGG 0.511702 5_2:+66972183 Msa0783160:CDS
TTGCTGCTGCATCATAAGCT+CGG 0.520694 5_2:-66972093 None:intergenic
ACAGGTCTAGGAGTAGCAAC+AGG 0.542027 5_2:-66972244 None:intergenic
GTCATTGAAATTTGGTGGAG+GGG 0.542132 5_2:-66972389 None:intergenic
TCGTCATTGAAATTTGGTGG+AGG 0.545606 5_2:-66972391 None:intergenic
TGAGATCGGTCTTCATTGGC+GGG 0.546290 5_2:-66972464 None:intergenic
GCAGCAGCAATTTCATTCCG+TGG 0.546846 5_2:+66972106 Msa0783160:CDS
TTGTAATGGCATTGAGCCCA+CGG 0.547937 5_2:-66972123 None:intergenic
CGTCATTGAAATTTGGTGGA+GGG 0.553404 5_2:-66972390 None:intergenic
CAGCAGCAATTTCATTCCGT+GGG 0.559441 5_2:+66972107 Msa0783160:CDS
GTGCAGAAATTCGAGATCCA+TGG 0.562453 5_2:+66972020 Msa0783160:CDS
ACTGGAGAAAAGTGCTGCAA+AGG 0.563060 5_2:+66971955 Msa0783160:CDS
CATTGAAATTTGGTGGAGGG+GGG 0.564772 5_2:-66972387 None:intergenic
AGATCGGTCTTCATTGGCGG+GGG 0.565594 5_2:-66972462 None:intergenic
GGGTAGCAGCGGGAAGTGAG+AGG 0.570385 5_2:-66972441 None:intergenic
ATAGCAGTAGAAGCATTGTA+AGG 0.571059 5_2:-66972157 None:intergenic
TCAACAGCAACAACAGGTCT+AGG 0.571940 5_2:-66972256 None:intergenic
AGGAAGCGAAGACACAAATA+CGG 0.620972 5_2:+66971998 Msa0783160:CDS
AACAGGAACCCTAGAAACAA+TGG 0.629858 5_2:-66972227 None:intergenic
AAATCCGTTATCGCGGCGTG+AGG 0.633090 5_2:+66971978 Msa0783160:CDS
AGCGGGAAGTGAGAGGCACA+AGG 0.648559 5_2:-66972434 None:intergenic
GAGATCGGTCTTCATTGGCG+GGG 0.651599 5_2:-66972463 None:intergenic
GCAAAGGAAATCCGTTATCG+CGG 0.686320 5_2:+66971971 Msa0783160:CDS
GATCGGTCTTCATTGGCGGG+GGG 0.722305 5_2:-66972461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAGATCAATGTTTAA+AGG - chr5_2:66972367-66972386 None:intergenic 20.0%
! AAAAAAGAATGTGTATGGTT+AGG + chr5_2:66972043-66972062 Msa0783160:CDS 25.0%
!!! CATACACATTCTTTTTTCCA+TGG - chr5_2:66972040-66972059 None:intergenic 30.0%
CATGGAAAAAAGAATGTGTA+TGG + chr5_2:66972038-66972057 Msa0783160:CDS 30.0%
!! TAGAAGCATTGTAAGGTATT+GGG - chr5_2:66972153-66972172 None:intergenic 30.0%
!! TTCTTCAACCATTGTTTCTA+GGG + chr5_2:66972219-66972238 Msa0783160:CDS 30.0%
TCTTCATCGTCATTGAAATT+TGG - chr5_2:66972400-66972419 None:intergenic 30.0%
!! AGGTATTGGGAAGTTTGTAA+TGG - chr5_2:66972140-66972159 None:intergenic 35.0%
!! GTAGAAGCATTGTAAGGTAT+TGG - chr5_2:66972154-66972173 None:intergenic 35.0%
!! ATAGCAGTAGAAGCATTGTA+AGG - chr5_2:66972160-66972179 None:intergenic 35.0%
! CTTCTTCAACCATTGTTTCT+AGG + chr5_2:66972218-66972237 Msa0783160:CDS 35.0%
TCATCGTCATTGAAATTTGG+TGG - chr5_2:66972397-66972416 None:intergenic 35.0%
GGATCAATTGAAAGCAGAAC+TGG + chr5_2:66971937-66971956 Msa0783160:CDS 40.0%
AGGAAGCGAAGACACAAATA+CGG + chr5_2:66971998-66972017 Msa0783160:CDS 40.0%
! TAGTACTGCTGAAGCATCTA+GGG + chr5_2:66972183-66972202 Msa0783160:CDS 40.0%
AACAGGAACCCTAGAAACAA+TGG - chr5_2:66972230-66972249 None:intergenic 40.0%
! TCATTGAAATTTGGTGGAGG+GGG - chr5_2:66972391-66972410 None:intergenic 40.0%
! GTCATTGAAATTTGGTGGAG+GGG - chr5_2:66972392-66972411 None:intergenic 40.0%
! CGTCATTGAAATTTGGTGGA+GGG - chr5_2:66972393-66972412 None:intergenic 40.0%
! TCGTCATTGAAATTTGGTGG+AGG - chr5_2:66972394-66972413 None:intergenic 40.0%
!! ACTGGAGAAAAGTGCTGCAA+AGG + chr5_2:66971955-66971974 Msa0783160:CDS 45.0%
GCAAAGGAAATCCGTTATCG+CGG + chr5_2:66971971-66971990 Msa0783160:CDS 45.0%
GTGCAGAAATTCGAGATCCA+TGG + chr5_2:66972020-66972039 Msa0783160:CDS 45.0%
TTGCTGCTGCATCATAAGCT+CGG - chr5_2:66972096-66972115 None:intergenic 45.0%
CAGCAGCAATTTCATTCCGT+GGG + chr5_2:66972107-66972126 Msa0783160:CDS 45.0%
! TTGTAATGGCATTGAGCCCA+CGG - chr5_2:66972126-66972145 None:intergenic 45.0%
! GTAGTACTGCTGAAGCATCT+AGG + chr5_2:66972182-66972201 Msa0783160:CDS 45.0%
! GAAGCATCTAGGGTTGTTGT+TGG + chr5_2:66972193-66972212 Msa0783160:CDS 45.0%
TCAACAGCAACAACAGGTCT+AGG - chr5_2:66972259-66972278 None:intergenic 45.0%
! AGACCTGTTGTTGCTGTTGA+AGG + chr5_2:66972259-66972278 Msa0783160:CDS 45.0%
CAACCTTCAACAGCAACAAC+AGG - chr5_2:66972265-66972284 None:intergenic 45.0%
! CATTGAAATTTGGTGGAGGG+GGG - chr5_2:66972390-66972409 None:intergenic 45.0%
TGCTGCTGCATCATAAGCTC+GGG - chr5_2:66972095-66972114 None:intergenic 50.0%
GCAGCAGCAATTTCATTCCG+TGG + chr5_2:66972106-66972125 Msa0783160:CDS 50.0%
ACAGGTCTAGGAGTAGCAAC+AGG - chr5_2:66972247-66972266 None:intergenic 50.0%
! AAGTGAGAGGCACAAGGTAG+TGG - chr5_2:66972431-66972450 None:intergenic 50.0%
AAATCCGTTATCGCGGCGTG+AGG + chr5_2:66971978-66971997 Msa0783160:CDS 55.0%
GCTTCCTCACGCCGCGATAA+CGG - chr5_2:66971985-66972004 None:intergenic 60.0%
! AGCGGGAAGTGAGAGGCACA+AGG - chr5_2:66972437-66972456 None:intergenic 60.0%
GGGTAGCAGCGGGAAGTGAG+AGG - chr5_2:66972444-66972463 None:intergenic 65.0%
TCATTGGCGGGGGGTAGCAG+CGG - chr5_2:66972455-66972474 None:intergenic 65.0%
CATTGGCGGGGGGTAGCAGC+GGG - chr5_2:66972454-66972473 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 66971935 66972474 66971935 ID=Msa0783160;Name=Msa0783160
chr5_2 mRNA 66971935 66972474 66971935 ID=Msa0783160-mRNA-1;Parent=Msa0783160;Name=Msa0783160-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|179
chr5_2 exon 66971935 66972474 66971935 ID=Msa0783160-mRNA-1:exon:20112;Parent=Msa0783160-mRNA-1
chr5_2 CDS 66971935 66972474 66971935 ID=Msa0783160-mRNA-1:cds;Parent=Msa0783160-mRNA-1
Gene Sequence

>Msa0783160

ATGGATCAATTGAAAGCAGAACTGGAGAAAAGTGCTGCAAAGGAAATCCGTTATCGCGGCGTGAGGAAGCGAAGACACAAATACGGTGCAGAAATTCGAGATCCATGGAAAAAAGAATGTGTATGGTTAGGCACTTACGATACTGCAGAGCAAGCAGCCCGAGCTTATGATGCAGCAGCAATTTCATTCCGTGGGCTCAATGCCATTACAAACTTCCCAATACCTTACAATGCTTCTACTGCTATGAGTAGTACTGCTGAAGCATCTAGGGTTGTTGTTGGTTCTTCTTCAACCATTGTTTCTAGGGTTCCTGTTGCTACTCCTAGACCTGTTGTTGCTGTTGAAGGTTGTCACAGTGAATGTGATTCTTCTTCTGTTGTTGACGATGAAGATGAAGATTGTATTATCATTTCTTCTTCAATTCGAAAGCCTTTAAACATTGATCTCAATTTCCCCCCTCCACCAAATTTCAATGACGATGAAGAGATTCGCGCCACTACCTTGTGCCTCTCACTTCCCGCTGCTACCCCCCGCCAATGA
Protein sequence

>Msa0783160

MDQLKAELEKSAAKEIRYRGVRKRRHKYGAEIRDPWKKECVWLGTYDTAEQAARAYDAAAISFRGLNAITNFPIPYNASTAMSSTAEASRVVVGSSSTIVSRVPVATPRPVVAVEGCHSECDSSSVVDDEDEDCIIISSSIRKPLNIDLNFPPPPNFNDDEEIRATTLCLSLPAATPRQ*