Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414410 | KEH34477.1 | 90.062 | 161 | 16 | 0 | 1 | 161 | 1 | 161 | 1.41e-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414410 | sp|Q9FJK3|AGL80_ARATH | 50.000 | 156 | 75 | 2 | 1 | 155 | 1 | 154 | 6.58e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414410 | A0A072UY35 | 90.062 | 161 | 16 | 0 | 1 | 161 | 1 | 161 | 6.75e-103 | 301 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0414410 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa0414410 | 0.833097 | 6.485553e-56 | -8.615850e-47 |
| Msa0015750 | Msa0414410 | 0.836186 | 1.084564e-56 | -8.615850e-47 |
| Msa0016570 | Msa0414410 | 0.864551 | 1.121035e-64 | -8.615850e-47 |
| Msa0016580 | Msa0414410 | 0.834434 | 3.003972e-56 | -8.615850e-47 |
| Msa0092630 | Msa0414410 | 0.800868 | 1.177882e-48 | -8.615850e-47 |
| Msa0102070 | Msa0414410 | 0.885855 | 5.672988e-72 | -8.615850e-47 |
| Msa0107580 | Msa0414410 | 0.813693 | 2.249804e-51 | -8.615850e-47 |
| Msa0110270 | Msa0414410 | 0.836986 | 6.785170e-57 | -8.615850e-47 |
| Msa0111510 | Msa0414410 | 0.821698 | 3.516857e-53 | -8.615850e-47 |
| Msa0124100 | Msa0414410 | 0.824175 | 9.304888e-54 | -8.615850e-47 |
| Msa0142220 | Msa0414410 | 0.842894 | 1.956202e-58 | -8.615850e-47 |
| Msa0145750 | Msa0414410 | 0.850885 | 1.271255e-60 | -8.615850e-47 |
| Msa0153910 | Msa0414410 | 0.853502 | 2.290448e-61 | -8.615850e-47 |
| Msa0188460 | Msa0414410 | 0.811064 | 8.437699e-51 | -8.615850e-47 |
| Msa0197010 | Msa0414410 | 0.804346 | 2.257231e-49 | -8.615850e-47 |
| Msa0200000 | Msa0414410 | 0.839419 | 1.603011e-57 | -8.615850e-47 |
| Msa0227480 | Msa0414410 | 0.889182 | 3.045048e-73 | -8.615850e-47 |
| Msa0231000 | Msa0414410 | 0.836754 | 7.776183e-57 | -8.615850e-47 |
| Msa0232850 | Msa0414410 | 0.870494 | 1.399010e-66 | -8.615850e-47 |
| Msa0235140 | Msa0414410 | 0.837190 | 6.014651e-57 | -8.615850e-47 |
| Msa0365500 | Msa0414410 | 0.864536 | 1.132883e-64 | -8.615850e-47 |
| Msa0366420 | Msa0414410 | 0.909708 | 4.224088e-82 | -8.615850e-47 |
| Msa0366430 | Msa0414410 | 0.800987 | 1.113383e-48 | -8.615850e-47 |
| Msa0366580 | Msa0414410 | 0.800698 | 1.275525e-48 | -8.615850e-47 |
| Msa0384800 | Msa0414410 | 0.866024 | 3.857180e-65 | -8.615850e-47 |
| Msa0384890 | Msa0414410 | 0.841131 | 5.722940e-58 | -8.615850e-47 |
| Msa0394970 | Msa0414410 | 0.822186 | 2.709708e-53 | -8.615850e-47 |
| Msa0402290 | Msa0414410 | 0.800579 | 1.348749e-48 | -8.615850e-47 |
| Msa0406120 | Msa0414410 | 0.824024 | 1.009516e-53 | -8.615850e-47 |
| Msa0407750 | Msa0414410 | 0.822118 | 2.811294e-53 | -8.615850e-47 |
| Msa0414410 | Msa0414420 | 0.929044 | 1.221416e-92 | -8.615850e-47 |
| Msa0414410 | Msa0423020 | 0.800994 | 1.109846e-48 | -8.615850e-47 |
| Msa0414410 | Msa0435230 | 0.820089 | 8.244610e-53 | -8.615850e-47 |
| Msa0414410 | Msa0436780 | 0.847863 | 8.833735e-60 | -8.615850e-47 |
| Msa0414410 | Msa0436800 | 0.827797 | 1.282909e-54 | -8.615850e-47 |
| Msa0414410 | Msa0438620 | 0.855916 | 4.576029e-62 | -8.615850e-47 |
| Msa0414410 | Msa0450000 | 0.858442 | 8.217177e-63 | -8.615850e-47 |
| Msa0414410 | Msa0450570 | 0.842029 | 3.319147e-58 | -8.615850e-47 |
| Msa0414410 | Msa0451730 | 0.831404 | 1.701481e-55 | -8.615850e-47 |
| Msa0414410 | Msa0452900 | 0.925004 | 3.297262e-90 | -8.615850e-47 |
| Msa0414410 | Msa0452910 | 0.812605 | 3.897952e-51 | -8.615850e-47 |
| Msa0414410 | Msa0453120 | 0.852178 | 5.475626e-61 | -8.615850e-47 |
| Msa0414410 | Msa0454370 | 0.831819 | 1.344555e-55 | -8.615850e-47 |
| Msa0414410 | Msa0454910 | 0.858555 | 7.600331e-63 | -8.615850e-47 |
| Msa0414410 | Msa0459160 | 0.949098 | 2.526942e-107 | -8.615850e-47 |
| Msa0414410 | Msa0459170 | 0.859400 | 4.245001e-63 | -8.615850e-47 |
| Msa0414410 | Msa0479340 | 0.829515 | 4.930432e-55 | -8.615850e-47 |
| Msa0414410 | Msa0485030 | 0.835926 | 1.262591e-56 | -8.615850e-47 |
| Msa0414410 | Msa0491590 | 0.857711 | 1.354575e-62 | -8.615850e-47 |
| Msa0414410 | Msa0500170 | 0.809984 | 1.444273e-50 | -8.615850e-47 |
| Msa0414410 | Msa0502340 | 0.800072 | 1.710570e-48 | -8.615850e-47 |
| Msa0414410 | Msa0502760 | 0.827306 | 1.682506e-54 | -8.615850e-47 |
| Msa0414410 | Msa0505080 | 0.814827 | 1.263736e-51 | -8.615850e-47 |
| Msa0414410 | Msa0506190 | 0.864374 | 1.273456e-64 | -8.615850e-47 |
| Msa0414410 | Msa0506270 | 0.849390 | 3.335244e-60 | -8.615850e-47 |
| Msa0414410 | Msa0534540 | 0.837590 | 4.750735e-57 | -8.615850e-47 |
| Msa0414410 | Msa0564890 | 0.904419 | 1.251926e-79 | -8.615850e-47 |
| Msa0414410 | Msa0596150 | 0.843878 | 1.068832e-58 | -8.615850e-47 |
| Msa0414410 | Msa0598780 | 0.831374 | 1.730681e-55 | -8.615850e-47 |
| Msa0414410 | Msa0604350 | 0.817919 | 2.568010e-52 | -8.615850e-47 |
| Msa0414410 | Msa0636170 | 0.844295 | 8.258223e-59 | -8.615850e-47 |
| Msa0414410 | Msa0639610 | 0.835165 | 1.967087e-56 | -8.615850e-47 |
| Msa0414410 | Msa0678930 | 0.847196 | 1.347705e-59 | -8.615850e-47 |
| Msa0414410 | Msa0694370 | 0.829727 | 4.377597e-55 | -8.615850e-47 |
| Msa0414410 | Msa0697060 | 0.801049 | 1.081520e-48 | -8.615850e-47 |
| Msa0414410 | Msa0725850 | 0.818555 | 1.844019e-52 | -8.615850e-47 |
| Msa0414410 | Msa0726140 | 0.890754 | 7.402509e-74 | -8.615850e-47 |
| Msa0414410 | Msa0729800 | 0.852393 | 4.754724e-61 | -8.615850e-47 |
| Msa0414410 | Msa0732310 | 0.808387 | 3.176268e-50 | -8.615850e-47 |
| Msa0414410 | Msa0733290 | 0.843753 | 1.154383e-58 | -8.615850e-47 |
| Msa0414410 | Msa0735080 | 0.807717 | 4.410448e-50 | -8.615850e-47 |
| Msa0414410 | Msa0741990 | 0.801337 | 9.441964e-49 | -8.615850e-47 |
| Msa0414410 | Msa0743810 | 0.899085 | 2.807853e-77 | -8.615850e-47 |
| Msa0414410 | Msa0745060 | 0.891716 | 3.080734e-74 | -8.615850e-47 |
| Msa0414410 | Msa0766630 | 0.817365 | 3.424590e-52 | -8.615850e-47 |
| Msa0414410 | Msa0767720 | 0.889699 | 1.916866e-73 | -8.615850e-47 |
| Msa0414410 | Msa0777870 | 0.841381 | 4.918124e-58 | -8.615850e-47 |
| Msa0414410 | Msa0783160 | 0.904167 | 1.628791e-79 | -8.615850e-47 |
| Msa0414410 | Msa0784290 | 0.815016 | 1.147236e-51 | -8.615850e-47 |
| Msa0414410 | Msa0784300 | 0.800850 | 1.187684e-48 | -8.615850e-47 |
| Msa0414410 | Msa0787600 | 0.892557 | 1.422686e-74 | -8.615850e-47 |
| Msa0414410 | Msa0808010 | 0.874203 | 8.114722e-68 | -8.615850e-47 |
| Msa0414410 | Msa0808020 | 0.869367 | 3.264403e-66 | -8.615850e-47 |
| Msa0414410 | Msa0811080 | 0.810295 | 1.237764e-50 | -8.615850e-47 |
| Msa0414410 | Msa0811270 | 0.813846 | 2.081253e-51 | -8.615850e-47 |
| Msa0414410 | Msa0825860 | 0.899563 | 1.751143e-77 | -8.615850e-47 |
| Msa0414410 | Msa0833290 | 0.875977 | 2.012640e-68 | -8.615850e-47 |
| Msa0414410 | Msa0833300 | 0.827531 | 1.486084e-54 | -8.615850e-47 |
| Msa0414410 | Msa0845930 | 0.805644 | 1.208320e-49 | -8.615850e-47 |
| Msa0414410 | Msa0846210 | 0.850528 | 1.602057e-60 | -8.615850e-47 |
| Msa0414410 | Msa0846330 | 0.857007 | 2.188576e-62 | -8.615850e-47 |
| Msa0414410 | Msa0846350 | 0.871061 | 9.104695e-67 | -8.615850e-47 |
| Msa0414410 | Msa0848960 | 0.845057 | 5.147862e-59 | -8.615850e-47 |
| Msa0414410 | Msa0854980 | 0.806646 | 7.433546e-50 | -8.615850e-47 |
| Msa0414410 | Msa0858980 | 0.875811 | 2.295464e-68 | -8.615850e-47 |
| Msa0414410 | Msa0865320 | 0.880012 | 7.790120e-70 | -8.615850e-47 |
| Msa0414410 | Msa0872230 | 0.835963 | 1.235544e-56 | -8.615850e-47 |
| Msa0414410 | Msa0873460 | 0.812796 | 3.540473e-51 | -8.615850e-47 |
| Msa0414410 | Msa0885280 | 0.817323 | 3.500343e-52 | -8.615850e-47 |
| Msa0414410 | Msa0885290 | 0.847227 | 1.321468e-59 | -8.615850e-47 |
| Msa0414410 | Msa0887920 | 0.832335 | 1.002545e-55 | -8.615850e-47 |
| Msa0414410 | Msa0888370 | 0.844040 | 9.668949e-59 | -8.615850e-47 |
| Msa0414410 | Msa0888420 | 0.833988 | 3.886932e-56 | -8.615850e-47 |
| Msa0414410 | Msa0895270 | 0.825875 | 3.693362e-54 | -8.615850e-47 |
| Msa0414410 | Msa0896080 | 0.848582 | 5.590486e-60 | -8.615850e-47 |
| Msa0414410 | Msa0907260 | 0.833253 | 5.931812e-56 | -8.615850e-47 |
| Msa0414410 | Msa0914760 | 0.842269 | 2.865916e-58 | -8.615850e-47 |
| Msa0414410 | Msa0952190 | 0.804838 | 1.782095e-49 | -8.615850e-47 |
| Msa0414410 | Msa0952350 | 0.815344 | 9.701486e-52 | -8.615850e-47 |
| Msa0414410 | Msa0952720 | 0.842222 | 2.950260e-58 | -8.615850e-47 |
| Msa0414410 | Msa0954910 | 0.822070 | 2.883309e-53 | -8.615850e-47 |
| Msa0414410 | Msa0956270 | 0.836649 | 8.270235e-57 | -8.615850e-47 |
| Msa0414410 | Msa0957680 | 0.805427 | 1.342034e-49 | -8.615850e-47 |
| Msa0414410 | Msa0979850 | 0.839570 | 1.463794e-57 | -8.615850e-47 |
| Msa0414410 | Msa0981270 | 0.803177 | 3.947447e-49 | -8.615850e-47 |
| Msa0414410 | Msa0981370 | 0.900694 | 5.669700e-78 | -8.615850e-47 |
| Msa0414410 | Msa0989060 | 0.849034 | 4.189435e-60 | -8.615850e-47 |
| Msa0414410 | Msa1016280 | 0.897770 | 1.018905e-76 | -8.615850e-47 |
| Msa0414410 | Msa1023010 | 0.810391 | 1.179612e-50 | -8.615850e-47 |
| Msa0414410 | Msa1023050 | 0.802810 | 4.700440e-49 | -8.615850e-47 |
| Msa0414410 | Msa1024240 | 0.842205 | 2.981565e-58 | -8.615850e-47 |
| Msa0414410 | Msa1025360 | 0.906549 | 1.318034e-80 | -8.615850e-47 |
| Msa0414410 | Msa1025370 | 0.901080 | 3.844441e-78 | -8.615850e-47 |
| Msa0414410 | Msa1044830 | 0.906165 | 1.985428e-80 | -8.615850e-47 |
| Msa0414410 | Msa1044840 | 0.909019 | 9.043117e-82 | -8.615850e-47 |
| Msa0414410 | Msa1057920 | 0.802047 | 6.751289e-49 | -8.615850e-47 |
| Msa0414410 | Msa1060840 | 0.839319 | 1.701451e-57 | -8.615850e-47 |
| Msa0414410 | Msa1063640 | 0.807833 | 4.167012e-50 | -8.615850e-47 |
| Msa0414410 | Msa1088790 | 0.815826 | 7.576574e-52 | -8.615850e-47 |
| Msa0414410 | Msa1092990 | 0.881138 | 3.079328e-70 | -8.615850e-47 |
| Msa0414410 | Msa1099970 | 0.816042 | 6.781892e-52 | -8.615850e-47 |
| Msa0414410 | Msa1100980 | 0.917016 | 8.860513e-86 | -8.615850e-47 |
| Msa0414410 | Msa1109440 | 0.904077 | 1.788134e-79 | -8.615850e-47 |
| Msa0414410 | Msa1121200 | 0.912228 | 2.476004e-83 | -8.615850e-47 |
| Msa0414410 | Msa1135740 | 0.896292 | 4.244516e-76 | -8.615850e-47 |
| Msa0414410 | Msa1136090 | 0.834711 | 2.559592e-56 | -8.615850e-47 |
| Msa0414410 | Msa1146110 | 0.890351 | 1.065903e-73 | -8.615850e-47 |
| Msa0414410 | Msa1149360 | 0.848871 | 4.650119e-60 | -8.615850e-47 |
| Msa0414410 | Msa1150370 | 0.863625 | 2.178074e-64 | -8.615850e-47 |
| Msa0414410 | Msa1150640 | 0.822313 | 2.532927e-53 | -8.615850e-47 |
| Msa0414410 | Msa1160670 | 0.801387 | 9.221996e-49 | -8.615850e-47 |
| Msa0414410 | Msa1164120 | 0.805104 | 1.568066e-49 | -8.615850e-47 |
| Msa0414410 | Msa1173920 | 0.827337 | 1.654515e-54 | -8.615850e-47 |
| Msa0414410 | Msa1178340 | 0.800450 | 1.433420e-48 | -8.615850e-47 |
| Msa0414410 | Msa1182090 | 0.803651 | 3.148470e-49 | -8.615850e-47 |
| Msa0414410 | Msa1184420 | 0.822422 | 2.389140e-53 | -8.615850e-47 |
| Msa0414410 | Msa1187940 | 0.869046 | 4.150860e-66 | -8.615850e-47 |
| Msa0414410 | Msa1187950 | 0.868135 | 8.177114e-66 | -8.615850e-47 |
| Msa0414410 | Msa1192640 | 0.900116 | 1.010890e-77 | -8.615850e-47 |
| Msa0414410 | Msa1193730 | 0.826872 | 2.137484e-54 | -8.615850e-47 |
| Msa0414410 | Msa1230430 | 0.829579 | 4.756475e-55 | -8.615850e-47 |
| Msa0414410 | Msa1246880 | 0.852081 | 5.834425e-61 | -8.615850e-47 |
| Msa0414410 | Msa1248310 | 0.816314 | 5.895160e-52 | -8.615850e-47 |
| Msa0414410 | Msa1260100 | 0.828032 | 1.126237e-54 | -8.615850e-47 |
| Msa0414410 | Msa1269670 | 0.890572 | 8.727742e-74 | -8.615850e-47 |
| Msa0414410 | Msa1270230 | 0.911875 | 3.701969e-83 | -8.615850e-47 |
| Msa0414410 | Msa1270240 | 0.880951 | 3.594910e-70 | -8.615850e-47 |
| Msa0414410 | Msa1270270 | 0.874093 | 8.838890e-68 | -8.615850e-47 |
| Msa0414410 | Msa1273230 | 0.821710 | 3.493170e-53 | -8.615850e-47 |
| Msa0414410 | Msa1283330 | 0.902158 | 1.290350e-78 | -8.615850e-47 |
| Msa0414410 | Msa1285930 | 0.907136 | 7.016168e-81 | -8.615850e-47 |
| Msa0414410 | Msa1287800 | 0.914983 | 1.009031e-84 | -8.615850e-47 |
| Msa0414410 | Msa1287810 | 0.926315 | 5.548842e-91 | -8.615850e-47 |
| Msa0414410 | Msa1287820 | 0.807362 | 5.244690e-50 | -8.615850e-47 |
| Msa0414410 | Msa1287830 | 0.842505 | 2.482198e-58 | -8.615850e-47 |
| Msa0414410 | Msa1289420 | 0.821681 | 3.547358e-53 | -8.615850e-47 |
| Msa0414410 | Msa1289430 | 0.875661 | 2.584910e-68 | -8.615850e-47 |
| Msa0414410 | Msa1297210 | 0.815055 | 1.124396e-51 | -8.615850e-47 |
| Msa0414410 | Msa1305480 | 0.844336 | 8.051726e-59 | -8.615850e-47 |
| Msa0414410 | Msa1307890 | 0.877250 | 7.302763e-69 | -8.615850e-47 |
| Msa0414410 | Msa1310120 | 0.816796 | 4.596769e-52 | -8.615850e-47 |
| Msa0414410 | Msa1314280 | 0.801075 | 1.068232e-48 | -8.615850e-47 |
| Msa0414410 | Msa1320300 | 0.856276 | 3.590122e-62 | -8.615850e-47 |
| Msa0414410 | Msa1321560 | 0.801346 | 9.404327e-49 | -8.615850e-47 |
| Msa0414410 | Msa1340590 | 0.852559 | 4.264952e-61 | -8.615850e-47 |
| Msa0414410 | Msa1342200 | 0.828804 | 7.332388e-55 | -8.615850e-47 |
| Msa0414410 | Msa1344520 | 0.840516 | 8.296285e-58 | -8.615850e-47 |
| Msa0414410 | Msa1369430 | 0.829441 | 5.138407e-55 | -8.615850e-47 |
| Msa0414410 | Msa1382690 | 0.823874 | 1.094974e-53 | -8.615850e-47 |
| Msa0414410 | Msa1382700 | 0.815763 | 7.823944e-52 | -8.615850e-47 |
| Msa0414410 | Msa1386330 | 0.802312 | 5.954936e-49 | -8.615850e-47 |
| Msa0414410 | Msa1397150 | 0.800448 | 1.434781e-48 | -8.615850e-47 |
| Msa0414410 | Msa1397580 | 0.845669 | 3.516913e-59 | -8.615850e-47 |
| Msa0414410 | Msa1402790 | 0.820603 | 6.286381e-53 | -8.615850e-47 |
| Msa0414410 | Msa1404000 | 0.891124 | 5.286673e-74 | -8.615850e-47 |
| Msa0414410 | Msa1404020 | 0.803849 | 2.864896e-49 | -8.615850e-47 |
| Msa0414410 | Msa1408780 | 0.828221 | 1.014096e-54 | -8.615850e-47 |
| Msa0414410 | Msa1415310 | 0.876375 | 1.467849e-68 | -8.615850e-47 |
| Msa0414410 | Msa1422180 | 0.870657 | 1.236111e-66 | -8.615850e-47 |
| Msa0414410 | Msa1433120 | 0.911171 | 8.224360e-83 | -8.615850e-47 |
| Msa0414410 | Msa1451570 | 0.808095 | 3.664626e-50 | -8.615850e-47 |
| Msa0267000 | Msa0414410 | 0.900466 | 7.126215e-78 | -8.615850e-47 |
| Msa0267010 | Msa0414410 | 0.901141 | 3.617554e-78 | -8.615850e-47 |
| Msa0270520 | Msa0414410 | 0.860416 | 2.097073e-63 | -8.615850e-47 |
| Msa0282310 | Msa0414410 | 0.809551 | 1.789245e-50 | -8.615850e-47 |
| Msa0285810 | Msa0414410 | 0.804926 | 1.708641e-49 | -8.615850e-47 |
| Msa0304170 | Msa0414410 | 0.836782 | 7.646762e-57 | -8.615850e-47 |
| Msa0306460 | Msa0414410 | 0.828085 | 1.093503e-54 | -8.615850e-47 |
| Msa0309020 | Msa0414410 | 0.807216 | 5.632294e-50 | -8.615850e-47 |
| Msa0313760 | Msa0414410 | 0.858854 | 6.187732e-63 | -8.615850e-47 |
| Msa0342240 | Msa0414410 | 0.894680 | 1.963147e-75 | -8.615850e-47 |
| Msa0360510 | Msa0414410 | 0.898343 | 5.820773e-77 | -8.615850e-47 |
| Msa0362420 | Msa0414410 | 0.805896 | 1.069598e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414410 | MtrunA17_Chr3g0107461 | 90.062 | 161 | 16 | 0 | 1 | 161 | 1 | 161 | 1.30e-106 | 301 |
| Msa0414410 | MtrunA17_Chr4g0031421 | 78.947 | 133 | 28 | 0 | 29 | 161 | 1 | 133 | 6.90e-74 | 218 |
| Msa0414410 | MtrunA17_Chr3g0105791 | 78.195 | 133 | 29 | 0 | 29 | 161 | 1 | 133 | 1.59e-72 | 214 |
| Msa0414410 | MtrunA17_Chr3g0107381 | 55.195 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 5.55e-57 | 177 |
| Msa0414410 | MtrunA17_Chr3g0110131 | 50.323 | 155 | 76 | 1 | 1 | 155 | 1 | 154 | 7.54e-43 | 142 |
| Msa0414410 | MtrunA17_Chr2g0283941 | 43.590 | 156 | 88 | 0 | 5 | 160 | 5 | 160 | 9.62e-42 | 139 |
| Msa0414410 | MtrunA17_Chr2g0296861 | 48.387 | 155 | 79 | 1 | 1 | 155 | 1 | 154 | 4.76e-41 | 135 |
| Msa0414410 | MtrunA17_Chr5g0432691 | 40.260 | 154 | 91 | 1 | 1 | 154 | 1 | 153 | 4.36e-38 | 127 |
| Msa0414410 | MtrunA17_Chr8g0351751 | 41.509 | 159 | 91 | 1 | 1 | 157 | 1 | 159 | 4.17e-37 | 127 |
| Msa0414410 | MtrunA17_Chr4g0014321 | 38.312 | 154 | 95 | 0 | 1 | 154 | 1 | 154 | 1.03e-36 | 126 |
| Msa0414410 | MtrunA17_Chr3g0107331 | 41.060 | 151 | 88 | 1 | 3 | 153 | 2 | 151 | 2.26e-34 | 118 |
| Msa0414410 | MtrunA17_Chr4g0014031 | 43.590 | 156 | 88 | 0 | 1 | 156 | 1 | 156 | 4.59e-34 | 119 |
| Msa0414410 | MtrunA17_Chr4g0014131 | 43.478 | 161 | 91 | 0 | 1 | 161 | 1 | 161 | 4.62e-34 | 119 |
| Msa0414410 | MtrunA17_Chr3g0106421 | 44.697 | 132 | 73 | 0 | 29 | 160 | 1 | 132 | 8.64e-34 | 118 |
| Msa0414410 | MtrunA17_Chr2g0296831 | 51.282 | 117 | 57 | 0 | 1 | 117 | 1 | 117 | 1.41e-33 | 115 |
| Msa0414410 | MtrunA17_Chr3g0106501 | 45.736 | 129 | 70 | 0 | 29 | 157 | 1 | 129 | 5.62e-32 | 112 |
| Msa0414410 | MtrunA17_Chr4g0014121 | 39.744 | 156 | 94 | 0 | 1 | 156 | 29 | 184 | 3.97e-31 | 110 |
| Msa0414410 | MtrunA17_Chr4g0013041 | 37.791 | 172 | 86 | 4 | 1 | 157 | 1 | 166 | 4.87e-31 | 111 |
| Msa0414410 | MtrunA17_Chr5g0420351 | 38.854 | 157 | 94 | 2 | 1 | 157 | 1 | 155 | 6.21e-31 | 109 |
| Msa0414410 | MtrunA17_Chr3g0107351 | 36.774 | 155 | 97 | 1 | 3 | 157 | 2 | 155 | 2.56e-30 | 107 |
| Msa0414410 | MtrunA17_Chr1g0188681 | 40.000 | 160 | 88 | 4 | 1 | 157 | 1 | 155 | 9.90e-29 | 103 |
| Msa0414410 | MtrunA17_Chr3g0107341 | 37.500 | 152 | 94 | 1 | 3 | 154 | 2 | 152 | 2.73e-28 | 102 |
| Msa0414410 | MtrunA17_Chr3g0107361 | 37.500 | 152 | 94 | 1 | 3 | 154 | 2 | 152 | 3.21e-28 | 102 |
| Msa0414410 | MtrunA17_Chr1g0197461 | 34.839 | 155 | 99 | 2 | 3 | 157 | 2 | 154 | 1.64e-27 | 100 |
| Msa0414410 | MtrunA17_Chr1g0188661 | 38.608 | 158 | 93 | 3 | 1 | 157 | 1 | 155 | 1.75e-26 | 98.2 |
| Msa0414410 | MtrunA17_Chr4g0012761 | 38.854 | 157 | 94 | 2 | 1 | 157 | 1 | 155 | 2.34e-26 | 97.8 |
| Msa0414410 | MtrunA17_Chr7g0218151 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 9.13e-25 | 93.6 |
| Msa0414410 | MtrunA17_Chr1g0188651 | 37.267 | 161 | 97 | 2 | 1 | 161 | 1 | 157 | 1.29e-24 | 93.2 |
| Msa0414410 | MtrunA17_Chr1g0197261 | 32.911 | 158 | 102 | 3 | 1 | 157 | 1 | 155 | 3.70e-24 | 92.0 |
| Msa0414410 | MtrunA17_Chr1g0197321 | 33.333 | 159 | 101 | 3 | 1 | 157 | 1 | 156 | 9.78e-24 | 90.9 |
| Msa0414410 | MtrunA17_Chr1g0193311 | 36.709 | 158 | 96 | 3 | 1 | 157 | 1 | 155 | 1.32e-23 | 90.5 |
| Msa0414410 | MtrunA17_Chr4g0008701 | 28.859 | 149 | 99 | 3 | 3 | 148 | 6 | 150 | 4.63e-15 | 71.6 |
| Msa0414410 | MtrunA17_Chr7g0267601 | 28.947 | 114 | 81 | 0 | 5 | 118 | 8 | 121 | 1.88e-13 | 67.0 |
| Msa0414410 | MtrunA17_Chr3g0128721 | 25.490 | 153 | 105 | 2 | 5 | 153 | 8 | 155 | 2.94e-12 | 63.5 |
| Msa0414410 | MtrunA17_Chr6g0457851 | 29.204 | 113 | 73 | 3 | 1 | 107 | 11 | 122 | 6.25e-12 | 62.4 |
| Msa0414410 | MtrunA17_Chr1g0212151 | 28.448 | 116 | 76 | 3 | 1 | 110 | 1 | 115 | 1.38e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414410 | AT5G48670.1 | 50.000 | 156 | 75 | 2 | 1 | 155 | 1 | 154 | 6.69e-39 | 134 |
| Msa0414410 | AT3G05860.2 | 53.535 | 99 | 46 | 0 | 1 | 99 | 1 | 99 | 8.61e-31 | 110 |
| Msa0414410 | AT1G65330.1 | 41.892 | 148 | 85 | 1 | 3 | 150 | 2 | 148 | 1.30e-30 | 112 |
| Msa0414410 | AT3G05860.3 | 53.535 | 99 | 46 | 0 | 1 | 99 | 1 | 99 | 1.78e-30 | 111 |
| Msa0414410 | AT3G05860.1 | 53.535 | 99 | 46 | 0 | 1 | 99 | 1 | 99 | 2.84e-30 | 110 |
| Msa0414410 | AT1G65300.1 | 40.127 | 157 | 92 | 2 | 5 | 161 | 4 | 158 | 4.05e-30 | 110 |
| Msa0414410 | AT5G27810.1 | 53.933 | 89 | 41 | 0 | 29 | 117 | 1 | 89 | 4.04e-29 | 103 |
| Msa0414410 | AT5G26650.1 | 36.601 | 153 | 96 | 1 | 5 | 157 | 3 | 154 | 8.21e-26 | 101 |
| Msa0414410 | AT5G27960.1 | 35.294 | 153 | 98 | 1 | 5 | 157 | 3 | 154 | 1.64e-24 | 97.1 |
| Msa0414410 | AT1G31630.1 | 36.076 | 158 | 87 | 4 | 3 | 154 | 2 | 151 | 7.49e-24 | 95.5 |
| Msa0414410 | AT1G31640.1 | 39.623 | 159 | 82 | 4 | 3 | 155 | 2 | 152 | 1.28e-23 | 96.3 |
| Msa0414410 | AT1G22590.2 | 33.750 | 160 | 89 | 2 | 1 | 157 | 1 | 146 | 1.54e-23 | 90.9 |
| Msa0414410 | AT2G28700.1 | 32.667 | 150 | 100 | 1 | 1 | 150 | 1 | 149 | 9.77e-22 | 89.7 |
| Msa0414410 | AT5G26630.1 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 4.05e-21 | 85.9 |
| Msa0414410 | AT5G06500.1 | 33.333 | 147 | 88 | 3 | 1 | 147 | 1 | 137 | 3.82e-19 | 81.3 |
| Msa0414410 | AT2G40210.1 | 34.653 | 101 | 66 | 0 | 1 | 101 | 1 | 101 | 2.78e-14 | 69.3 |
| Msa0414410 | AT5G26580.1 | 37.624 | 101 | 49 | 1 | 1 | 101 | 1 | 87 | 8.81e-14 | 67.8 |
| Msa0414410 | AT3G57230.1 | 29.012 | 162 | 100 | 4 | 1 | 161 | 1 | 148 | 3.51e-12 | 62.8 |
| Msa0414410 | AT3G57230.4 | 29.012 | 162 | 100 | 4 | 1 | 161 | 1 | 148 | 3.51e-12 | 62.8 |
Find 36 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCTGCTTTC+TGG | 0.066665 | 3_2:-59915203 | None:intergenic |
| ATTCATACCACAGAATTTAA+TGG | 0.196701 | 3_2:+59915241 | Msa0414410:CDS |
| CAGGTTTGGCCATCAGATTC+AGG | 0.224706 | 3_2:+59915046 | Msa0414410:CDS |
| CCTGGGCTTGAGGATTGTTT+TGG | 0.292217 | 3_2:-59915027 | None:intergenic |
| GATGAAATTAGCACTCTTTG+TGG | 0.382102 | 3_2:+59914977 | Msa0414410:CDS |
| GTTCAGGAGTTTGCCTGGAC+TGG | 0.382826 | 3_2:+59915090 | Msa0414410:CDS |
| CTGAATCTGATGGCCAAACC+TGG | 0.394792 | 3_2:-59915045 | None:intergenic |
| GAAGTGTGATATCCAGGTTC+AGG | 0.406864 | 3_2:+59915074 | Msa0414410:CDS |
| AATGAAATGATGAATGATAT+TGG | 0.442815 | 3_2:-59915221 | None:intergenic |
| AGGTTTGGCCATCAGATTCA+GGG | 0.444978 | 3_2:+59915047 | Msa0414410:CDS |
| TCCAGGTTCAGGAGTTTGCC+TGG | 0.447666 | 3_2:+59915085 | Msa0414410:CDS |
| ACAATCCTCAAGCCCAGGTT+TGG | 0.451431 | 3_2:+59915032 | Msa0414410:CDS |
| TATTCTTGAGGCAAAGCATT+GGG | 0.452810 | 3_2:+59915143 | Msa0414410:CDS |
| GGGTTAGAAGTGTGATATCC+AGG | 0.506627 | 3_2:+59915068 | Msa0414410:CDS |
| TCCAGGCAAACTCCTGAACC+TGG | 0.517673 | 3_2:-59915086 | None:intergenic |
| AAGGAAGGAAACCAGAAAGC+AGG | 0.520416 | 3_2:+59915192 | Msa0414410:CDS |
| CAAATTCTCAGCAATAAAAG+AGG | 0.520681 | 3_2:-59915299 | None:intergenic |
| GGAGGATGACATTCAGAAAG+AGG | 0.520726 | 3_2:+59914737 | Msa0414410:CDS |
| ACTCTTTGTGGAATAGAAGC+TGG | 0.543874 | 3_2:+59914989 | Msa0414410:CDS |
| TAAATATCCATTAAATTCTG+TGG | 0.554522 | 3_2:-59915248 | None:intergenic |
| GTATTCTTGAGGCAAAGCAT+TGG | 0.555152 | 3_2:+59915142 | Msa0414410:CDS |
| GATGGCCAAACCTGGGCTTG+AGG | 0.558655 | 3_2:-59915037 | None:intergenic |
| CACTATCATGGCTAGAGGGA+AGG | 0.570504 | 3_2:+59914681 | None:intergenic |
| CCAAAACAATCCTCAAGCCC+AGG | 0.591446 | 3_2:+59915027 | Msa0414410:CDS |
| TGAATCTGATGGCCAAACCT+GGG | 0.592740 | 3_2:-59915044 | None:intergenic |
| TCCTCACTATCATGGCTAGA+GGG | 0.594549 | 3_2:+59914677 | None:intergenic |
| GAGGTCGATCAAAAGATGAA+AGG | 0.605953 | 3_2:+59915325 | Msa0414410:CDS |
| CTTCTAACCCCTGAATCTGA+TGG | 0.608216 | 3_2:-59915055 | None:intergenic |
| ATGAGCAGTTGATGAAACAA+AGG | 0.608842 | 3_2:+59915173 | Msa0414410:CDS |
| ACATAACATGTGACTCGAAG+AGG | 0.616371 | 3_2:+59914716 | Msa0414410:CDS |
| GGTTTGGCCATCAGATTCAG+GGG | 0.621539 | 3_2:+59915048 | Msa0414410:CDS |
| GCAGTTGATGAAACAAAGGA+AGG | 0.627441 | 3_2:+59915177 | Msa0414410:CDS |
| ATCCTCACTATCATGGCTAG+AGG | 0.627794 | 3_2:+59914676 | None:intergenic |
| TATTGCTGAGAATTTGAGGG+AGG | 0.639350 | 3_2:+59915306 | Msa0414410:CDS |
| TAACATGTGACTCGAAGAGG+AGG | 0.651743 | 3_2:+59914719 | Msa0414410:CDS |
| TGGATCAAGAGGTATTCTTG+AGG | 0.709854 | 3_2:+59915131 | Msa0414410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAGAATTTTACTAT+AGG | + | chr3_2:59914902-59914921 | Msa0414410:intron | 10.0% |
| !!! | ATGGATATATTTTTTTTAAT+AGG | + | chr3_2:59914938-59914957 | Msa0414410:intron | 10.0% |
| !! | TATAGGTTATATATTGTTTA+TGG | + | chr3_2:59914919-59914938 | Msa0414410:intron | 15.0% |
| !! | AATGAAATGATGAATGATAT+TGG | - | chr3_2:59915224-59915243 | None:intergenic | 20.0% |
| !! | TAAATATCCATTAAATTCTG+TGG | - | chr3_2:59915251-59915270 | None:intergenic | 20.0% |
| ! | ATTCATACCACAGAATTTAA+TGG | + | chr3_2:59915241-59915260 | Msa0414410:CDS | 25.0% |
| !! | TTTTATTGCTGAGAATTTGA+GGG | + | chr3_2:59915303-59915322 | Msa0414410:CDS | 25.0% |
| ACATTCAGAAAGAGGAAAAA+TGG | + | chr3_2:59914745-59914764 | Msa0414410:CDS | 30.0% | |
| TATGTATGATATGCAAAGAG+AGG | - | chr3_2:59914781-59914800 | None:intergenic | 30.0% | |
| ACTGGAACAAAGTAAAAAGA+TGG | + | chr3_2:59915108-59915127 | Msa0414410:CDS | 30.0% | |
| CAAATTCTCAGCAATAAAAG+AGG | - | chr3_2:59915302-59915321 | None:intergenic | 30.0% | |
| ! | CTTTTATTGCTGAGAATTTG+AGG | + | chr3_2:59915302-59915321 | Msa0414410:CDS | 30.0% |
| GATGAAATTAGCACTCTTTG+TGG | + | chr3_2:59914977-59914996 | Msa0414410:CDS | 35.0% | |
| ! | TTTTTACTTTGTTCCAGTCC+AGG | - | chr3_2:59915106-59915125 | None:intergenic | 35.0% |
| GGAACAAAGTAAAAAGATGG+TGG | + | chr3_2:59915111-59915130 | Msa0414410:CDS | 35.0% | |
| !! | TAAAAAGATGGTGGATCAAG+AGG | + | chr3_2:59915120-59915139 | Msa0414410:CDS | 35.0% |
| ! | TATTCTTGAGGCAAAGCATT+GGG | + | chr3_2:59915143-59915162 | Msa0414410:CDS | 35.0% |
| !! | ATGAGCAGTTGATGAAACAA+AGG | + | chr3_2:59915173-59915192 | Msa0414410:CDS | 35.0% |
| ACATAACATGTGACTCGAAG+AGG | + | chr3_2:59914716-59914735 | Msa0414410:CDS | 40.0% | |
| ACTCTTTGTGGAATAGAAGC+TGG | + | chr3_2:59914989-59915008 | Msa0414410:CDS | 40.0% | |
| !! | TGGATCAAGAGGTATTCTTG+AGG | + | chr3_2:59915131-59915150 | Msa0414410:CDS | 40.0% |
| GTATTCTTGAGGCAAAGCAT+TGG | + | chr3_2:59915142-59915161 | Msa0414410:CDS | 40.0% | |
| !! | GCAGTTGATGAAACAAAGGA+AGG | + | chr3_2:59915177-59915196 | Msa0414410:CDS | 40.0% |
| ATTGGTCATTTCCTGCTTTC+TGG | - | chr3_2:59915206-59915225 | None:intergenic | 40.0% | |
| TATTGCTGAGAATTTGAGGG+AGG | + | chr3_2:59915306-59915325 | Msa0414410:CDS | 40.0% | |
| GAGGTCGATCAAAAGATGAA+AGG | + | chr3_2:59915325-59915344 | Msa0414410:CDS | 40.0% | |
| TAACATGTGACTCGAAGAGG+AGG | + | chr3_2:59914719-59914738 | Msa0414410:CDS | 45.0% | |
| GGAGGATGACATTCAGAAAG+AGG | + | chr3_2:59914737-59914756 | Msa0414410:CDS | 45.0% | |
| TGAATCTGATGGCCAAACCT+GGG | - | chr3_2:59915047-59915066 | None:intergenic | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | + | chr3_2:59915047-59915066 | Msa0414410:CDS | 45.0% | |
| CTTCTAACCCCTGAATCTGA+TGG | - | chr3_2:59915058-59915077 | None:intergenic | 45.0% | |
| ! | GGGTTAGAAGTGTGATATCC+AGG | + | chr3_2:59915068-59915087 | Msa0414410:CDS | 45.0% |
| GAAGTGTGATATCCAGGTTC+AGG | + | chr3_2:59915074-59915093 | Msa0414410:CDS | 45.0% | |
| AAGGAAGGAAACCAGAAAGC+AGG | + | chr3_2:59915192-59915211 | Msa0414410:CDS | 45.0% | |
| ! | CCTGGGCTTGAGGATTGTTT+TGG | - | chr3_2:59915030-59915049 | None:intergenic | 50.0% |
| CCAAAACAATCCTCAAGCCC+AGG | + | chr3_2:59915027-59915046 | Msa0414410:CDS | 50.0% | |
| ACAATCCTCAAGCCCAGGTT+TGG | + | chr3_2:59915032-59915051 | Msa0414410:CDS | 50.0% | |
| CTGAATCTGATGGCCAAACC+TGG | - | chr3_2:59915048-59915067 | None:intergenic | 50.0% | |
| CAGGTTTGGCCATCAGATTC+AGG | + | chr3_2:59915046-59915065 | Msa0414410:CDS | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | + | chr3_2:59915048-59915067 | Msa0414410:CDS | 50.0% | |
| TCCAGGTTCAGGAGTTTGCC+TGG | + | chr3_2:59915085-59915104 | Msa0414410:CDS | 55.0% | |
| TCCAGGCAAACTCCTGAACC+TGG | - | chr3_2:59915089-59915108 | None:intergenic | 55.0% | |
| GTTCAGGAGTTTGCCTGGAC+TGG | + | chr3_2:59915090-59915109 | Msa0414410:CDS | 55.0% | |
| GATGGCCAAACCTGGGCTTG+AGG | - | chr3_2:59915040-59915059 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 59914688 | 59915366 | 59914688 | ID=Msa0414410;Name=Msa0414410 |
| chr3_2 | mRNA | 59914688 | 59915366 | 59914688 | ID=Msa0414410-mRNA-1;Parent=Msa0414410;Name=Msa0414410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|161 |
| chr3_2 | exon | 59914688 | 59914766 | 59914688 | ID=Msa0414410-mRNA-1:exon:12455;Parent=Msa0414410-mRNA-1 |
| chr3_2 | exon | 59914960 | 59915366 | 59914960 | ID=Msa0414410-mRNA-1:exon:12456;Parent=Msa0414410-mRNA-1 |
| chr3_2 | CDS | 59914688 | 59914766 | 59914688 | ID=Msa0414410-mRNA-1:cds;Parent=Msa0414410-mRNA-1 |
| chr3_2 | CDS | 59914960 | 59915366 | 59914960 | ID=Msa0414410-mRNA-1:cds;Parent=Msa0414410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
