AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1064160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064160 MtrunA17_Chr7g0230121 95.327 321 15 0 1 321 1 321 0.0 612
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064160 AT5G40660.1 71.480 277 78 1 44 319 47 323 2.46e-145 412

Find 95 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAATGCTCAATAATTT+TGG 0.051463 7_2:+56626348 None:intergenic
GAGAGGGTGGATGGAAATTT+AGG 0.165187 7_2:+56629092 None:intergenic
TCATCCTGAAAGCTATAATT+TGG 0.166010 7_2:+56624703 None:intergenic
CATCCCAAATTATAGCTTTC+AGG 0.189677 7_2:-56624707 Msa1064160:three_prime_UTR
CACTGGTTGGAGTCAGAATT+TGG 0.210951 7_2:-56625530 Msa1064160:CDS
TCATCACCAGTTGCATTTCT+TGG 0.241027 7_2:-56624775 Msa1064160:CDS
TATTGTTAACTAATTATAAT+AGG 0.247748 7_2:+56624408 None:intergenic
TCAACTTGATCATTGTTCTT+TGG 0.252579 7_2:+56624523 None:intergenic
ATGGGGTCTTGTTCTGTAGA+TGG 0.257323 7_2:-56624647 Msa1064160:three_prime_UTR
ATATTGACATAGCTGATATT+AGG 0.257910 7_2:-56624807 Msa1064160:CDS
TAGACTTGAAGAAGATTTAC+AGG 0.269964 7_2:-56625306 Msa1064160:intron
CACCGGAGTGTCCGGCGTTT+TGG 0.294846 7_2:-56629065 Msa1064160:CDS
TCGCCGCAGTCGGTGATTTC+AGG 0.324473 7_2:+56628973 None:intergenic
AGAGGGTGGATGGAAATTTA+GGG 0.345923 7_2:+56629093 None:intergenic
GACAGGTGGGGCCTTGTTGA+AGG 0.349063 7_2:-56624838 Msa1064160:CDS
TGGGGTCTTGTTCTGTAGAT+GGG 0.350620 7_2:-56624646 Msa1064160:three_prime_UTR
AAATAAGCTGATCGGGAGTT+AGG 0.392386 7_2:-56624553 Msa1064160:three_prime_UTR
ATTAGTTAACAATAATATAA+AGG 0.394720 7_2:-56624399 Msa1064160:three_prime_UTR
CTCCGCGGCGGCGGCCGACG+AGG 0.401254 7_2:-56629042 Msa1064160:CDS
TTATCATTGTAGCAAATAGA+TGG 0.410965 7_2:-56626442 Msa1064160:intron
TGCTTGCACTGCCTTGGAAA+GGG 0.418660 7_2:-56626386 Msa1064160:CDS
TATTGACATAGCTGATATTA+GGG 0.423099 7_2:-56624806 Msa1064160:CDS
ATTGTTGCTCAAAAGTCTCT+TGG 0.424338 7_2:+56624454 None:intergenic
TTTATGACGGGATCGATTGT+AGG 0.424513 7_2:-56628912 Msa1064160:CDS
ATTACTTTGTTGACGAGTTA+TGG 0.427340 7_2:-56624610 Msa1064160:three_prime_UTR
GAGACTTGCTTGCACTGCCT+TGG 0.428917 7_2:-56626392 Msa1064160:CDS
CATCCTGAAAGCTATAATTT+GGG 0.429869 7_2:+56624704 None:intergenic
TTTGTTCTTCAAAAGAAAGA+AGG 0.431518 7_2:+56629158 None:intergenic
GAAAACAGACGACTGTGAAT+TGG 0.434922 7_2:-56625426 Msa1064160:CDS
CGGGATCGATTGTAGGGAAA+AGG 0.450926 7_2:-56628905 Msa1064160:CDS
CTCATAAGAGGCATTGTAAA+GGG 0.454432 7_2:+56626412 None:intergenic
TAACGCTATTGCTGCTGAAT+GGG 0.455806 7_2:-56628760 Msa1064160:CDS
GACGAGTTATGGTGCTCTAT+AGG 0.457251 7_2:-56624599 Msa1064160:three_prime_UTR
GAGGAGGAGGAGGATAGTTT+GGG 0.460511 7_2:+56629229 None:intergenic
CTCCTCGTCGGCCGCCGCCG+CGG 0.460829 7_2:+56629040 None:intergenic
CTAACGCTATTGCTGCTGAA+TGG 0.471281 7_2:-56628761 Msa1064160:CDS
AGCTTAAGCGGTCTCTTAGC+AGG 0.471890 7_2:+56628801 None:intergenic
CAATGATCAAGTTGAGTCTC+CGG 0.474204 7_2:-56624515 Msa1064160:three_prime_UTR
TTTGGTGGAAAGCAGGAAGA+TGG 0.485177 7_2:-56625479 Msa1064160:CDS
ACGTCTGAAATAAGCTGATC+GGG 0.487646 7_2:-56624560 Msa1064160:three_prime_UTR
TCTCAGCTCACCGGAGTGTC+CGG 0.498918 7_2:-56629073 Msa1064160:CDS
ATTAACAATTGCCATTGCAT+TGG 0.499814 7_2:-56625369 Msa1064160:CDS
CTTGCGAGTTCACTGTCATC+AGG 0.500821 7_2:+56626289 None:intergenic
AGGTGGGGCCTTGTTGAAGG+TGG 0.501948 7_2:-56624835 Msa1064160:CDS
GACAAACCAAGAAATGCAAC+TGG 0.502836 7_2:+56624769 None:intergenic
GATCCCGTCATAAAAGAAAT+CGG 0.504982 7_2:+56628921 None:intergenic
TTGCTTGCACTGCCTTGGAA+AGG 0.505924 7_2:-56626387 Msa1064160:CDS
GACACTCCGGTGAGCTGAGA+GGG 0.508697 7_2:+56629076 None:intergenic
CGGTGAGCTGAGAGGGTGGA+TGG 0.511775 7_2:+56629083 None:intergenic
TATCAGCTATGTCAATATCA+TGG 0.523346 7_2:+56624812 None:intergenic
TGACAGTGAACTCGCAAGCT+TGG 0.523425 7_2:-56626284 Msa1064160:CDS
TTGCCATTGCATTGGTGCAT+GGG 0.523502 7_2:-56625361 Msa1064160:CDS
TTATGACGGGATCGATTGTA+GGG 0.523541 7_2:-56628911 Msa1064160:CDS
CCGATCGTACAAAATCTATC+CGG 0.528956 7_2:+56624496 None:intergenic
GGGGTCTTGTTCTGTAGATG+GGG 0.528960 7_2:-56624645 Msa1064160:three_prime_UTR
TCTCATAAGAGGCATTGTAA+AGG 0.532856 7_2:+56626411 None:intergenic
CCGCCGCGGAGCCAAAACGC+CGG 0.535070 7_2:+56629054 None:intergenic
TGATCCTCTACTACACTGGT+TGG 0.535520 7_2:-56625543 Msa1064160:CDS
GTGCAAGCAAGTCTCATAAG+AGG 0.536748 7_2:+56626400 None:intergenic
TTGTTCTTCAAAAGAAAGAA+GGG 0.537004 7_2:+56629159 None:intergenic
AACGTCTGAAATAAGCTGAT+CGG 0.543597 7_2:-56624561 Msa1064160:three_prime_UTR
GATGATAAGAATGTGAAAGA+AGG 0.550170 7_2:+56629184 None:intergenic
AGTTTACGCCTCGCCGCAGT+CGG 0.550895 7_2:+56628963 None:intergenic
AAGACAAGAGAAGCGGATGA+TGG 0.554937 7_2:-56628867 Msa1064160:CDS
ATTGCCATTGCATTGGTGCA+TGG 0.557107 7_2:-56625362 Msa1064160:CDS
AGCCAAAACGCCGGACACTC+CGG 0.558989 7_2:+56629063 None:intergenic
CATCCACCCTCTCAGCTCAC+CGG 0.562033 7_2:-56629082 Msa1064160:CDS
TTATAGCTTTCAGGATGAGA+TGG 0.563771 7_2:-56624698 Msa1064160:three_prime_UTR
ATCATCTTTCACATTCTCAT+CGG 0.566012 7_2:-56629012 Msa1064160:CDS
ATCTTTCACATTCTCATCGG+AGG 0.570107 7_2:-56629009 Msa1064160:CDS
AAGCGGATGATGGTAATGGT+TGG 0.574002 7_2:-56628857 Msa1064160:CDS
AGAGAAGCGGATGATGGTAA+TGG 0.574159 7_2:-56628861 Msa1064160:CDS
AAATTGATCCTCTACTACAC+TGG 0.578145 7_2:-56625547 Msa1064160:CDS
GCGTTAGCAAGAGCAACAGT+AGG 0.579760 7_2:+56628777 None:intergenic
GACTCCAACCAGTGTAGTAG+AGG 0.581369 7_2:+56625539 None:intergenic
TGGAAAGGGTTCCTGTGACA+AGG 0.585069 7_2:-56626372 Msa1064160:CDS
CCGCAGTCGGTGATTTCAGG+TGG 0.590652 7_2:+56628976 None:intergenic
TTTCCCATGCACCAATGCAA+TGG 0.595226 7_2:+56625358 None:intergenic
CAGACGTTGAACAATCTGAC+AGG 0.599441 7_2:+56624576 None:intergenic
AGAAGTGAAGACAAGAGAAG+CGG 0.606025 7_2:-56628874 Msa1064160:CDS
GCAGGAAGATGGTCTTGTGA+TGG 0.606259 7_2:-56625468 Msa1064160:CDS
GAGGCGTAAACTGTCGTCGT+CGG 0.606857 7_2:-56628952 Msa1064160:CDS
GAACTCGCAAGCTTGGTCCA+TGG 0.609025 7_2:-56626277 Msa1064160:intron
ACTCCGGTGAGCTGAGAGGG+TGG 0.611094 7_2:+56629079 None:intergenic
TGTCACAGGAACCCTTTCCA+AGG 0.620314 7_2:+56626375 None:intergenic
TTCTTCAAAAGAAAGAAGGG+AGG 0.631937 7_2:+56629162 None:intergenic
TATCATGGCCACCTTCAACA+AGG 0.639788 7_2:+56624827 None:intergenic
GCAACAGTAGGAAGCTTAAG+CGG 0.640307 7_2:+56628789 None:intergenic
TGCTGCAATAGCATCAATTG+CGG 0.640444 7_2:+56625403 None:intergenic
GCATGGGAAATTGCAAATTG+AGG 0.640793 7_2:-56625345 Msa1064160:CDS
GTTCACTGTCATCAGGAGCA+CGG 0.645009 7_2:+56626296 None:intergenic
GGACACTCCGGTGAGCTGAG+AGG 0.655400 7_2:+56629075 None:intergenic
CCACCTGAAATCACCGACTG+CGG 0.657677 7_2:-56628976 Msa1064160:CDS
AGATGATGACTGCTCCTCGT+CGG 0.687316 7_2:+56629028 None:intergenic
TGAAATCACCGACTGCGGCG+AGG 0.688123 7_2:-56628971 Msa1064160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTATTTTTTTTTTTCATT+AGG - chr7_2:56624979-56624998 Msa1064160:intron 10.0%
!! AAAAAATTAAAAATTTGTGA+AGG + chr7_2:56626990-56627009 None:intergenic 10.0%
!! TATTGTTAACTAATTATAAT+AGG + chr7_2:56629218-56629237 None:intergenic 10.0%
!! ATTAGTTAACAATAATATAA+AGG - chr7_2:56629224-56629243 Msa1064160:five_prime_UTR 10.0%
!! AGAACAGTAAATAAATTATA+TGG + chr7_2:56625997-56626016 None:intergenic 15.0%
!! ATTAAATAAATTATATGGTG+TGG + chr7_2:56626021-56626040 None:intergenic 15.0%
!! AGCACATTAAATAAATTATA+TGG + chr7_2:56626026-56626045 None:intergenic 15.0%
!!! TATGAATTTTTAAATTTGGT+AGG - chr7_2:56626137-56626156 Msa1064160:intron 15.0%
!!! ACTTTATATTCTGTTTTATA+TGG - chr7_2:56627102-56627121 Msa1064160:intron 15.0%
!!! ACTTTTAACATATCAATTTT+AGG - chr7_2:56627526-56627545 Msa1064160:intron 15.0%
!!! ATTAATTCATTTTTTCATGT+TGG - chr7_2:56627820-56627839 Msa1064160:intron 15.0%
!!! TTTCTTTTGAAGAACAAAAA+TGG - chr7_2:56624470-56624489 Msa1064160:three_prime_UTR 20.0%
!!! AAAGATTTTCAGTAATCAAT+TGG + chr7_2:56625745-56625764 None:intergenic 20.0%
!! TAAATAATTAACGTGATAGA+GGG + chr7_2:56625866-56625885 None:intergenic 20.0%
!! ATAAATAATTAACGTGATAG+AGG + chr7_2:56625867-56625886 None:intergenic 20.0%
!! TGGTTGAATATAAAATAAAG+TGG + chr7_2:56625944-56625963 None:intergenic 20.0%
!! TCAAATAAGTTAATCAAAAG+AGG - chr7_2:56626538-56626557 Msa1064160:intron 20.0%
!! AAGTTATGATCAAATACAAT+CGG - chr7_2:56626882-56626901 Msa1064160:intron 20.0%
!!! TGTGAAGGTTTTAATAAAAA+TGG + chr7_2:56626975-56626994 None:intergenic 20.0%
!! AAATTATTCTTGATGAATTG+AGG - chr7_2:56627015-56627034 Msa1064160:intron 20.0%
!! TGTCATTGGAAATATTTAAA+AGG - chr7_2:56627067-56627086 Msa1064160:intron 20.0%
!!! TATTCTGTTTTATATGGTTA+TGG - chr7_2:56627108-56627127 Msa1064160:intron 20.0%
!!! ATCAAATGCTCAATAATTTT+GGG + chr7_2:56627277-56627296 None:intergenic 20.0%
!!! TTAACATATCAATTTTAGGA+TGG - chr7_2:56627530-56627549 Msa1064160:intron 20.0%
!! ATTTAGAAAAGTGATATTGA+TGG - chr7_2:56627573-56627592 Msa1064160:intron 20.0%
!! AAGATATATGTATATGAATC+AGG + chr7_2:56628375-56628394 None:intergenic 20.0%
!!! TATCCAGATATTTTTATTCA+TGG - chr7_2:56628957-56628976 Msa1064160:CDS 20.0%
!!! ATCCAGATATTTTTATTCAT+GGG - chr7_2:56628958-56628977 Msa1064160:CDS 20.0%
! TTGTTCTTCAAAAGAAAGAA+GGG + chr7_2:56624467-56624486 None:intergenic 25.0%
! TTTGTTCTTCAAAAGAAAGA+AGG + chr7_2:56624468-56624487 None:intergenic 25.0%
! AGGTTAGTGTAAATGAAATT+TGG - chr7_2:56624999-56625018 Msa1064160:intron 25.0%
! CACAAGATAAAATAGTAGTA+AGG - chr7_2:56625336-56625355 Msa1064160:CDS 25.0%
!!! TTATTGATAGTGGCTTTTAT+TGG + chr7_2:56625768-56625787 None:intergenic 25.0%
! AAAAGCCACTATCAATAATT+AGG - chr7_2:56625770-56625789 Msa1064160:intron 25.0%
! AAAGCCACTATCAATAATTA+GGG - chr7_2:56625771-56625790 Msa1064160:intron 25.0%
! ATTTCCCTAATTATTGATAG+TGG + chr7_2:56625778-56625797 None:intergenic 25.0%
!! GTTTCTGTTATAGTTTTTCT+AGG + chr7_2:56626276-56626295 None:intergenic 25.0%
! AGATATAGAGATTAATGAGT+TGG - chr7_2:56626305-56626324 Msa1064160:CDS 25.0%
! TAAAGCTAATTGAAAAGTCA+AGG - chr7_2:56626815-56626834 Msa1064160:intron 25.0%
! CATCAAAAACATTATTGTCT+TGG - chr7_2:56626931-56626950 Msa1064160:intron 25.0%
! AGGATTGTAAGCTAATATTT+AGG - chr7_2:56627035-56627054 Msa1064160:intron 25.0%
! ATATTTCCAATGACAGTTAA+GGG + chr7_2:56627062-56627081 None:intergenic 25.0%
! AATATTTCCAATGACAGTTA+AGG + chr7_2:56627063-56627082 None:intergenic 25.0%
! TTATCATTGTAGCAAATAGA+TGG - chr7_2:56627181-56627200 Msa1064160:intron 25.0%
!! CATCAAATGCTCAATAATTT+TGG + chr7_2:56627278-56627297 None:intergenic 25.0%
!!! AAAAGTGATATTGATGGTTT+TGG - chr7_2:56627579-56627598 Msa1064160:intron 25.0%
!!! AAAGTGATATTGATGGTTTT+GGG - chr7_2:56627580-56627599 Msa1064160:intron 25.0%
!!! GATTTTCTATTAGTTTGCTT+AGG - chr7_2:56627766-56627785 Msa1064160:intron 25.0%
!!! ATTTTTTCATGTTGGCTATA+TGG - chr7_2:56627828-56627847 Msa1064160:intron 25.0%
!! TCTGTTATCCTAAAAAGTAT+TGG + chr7_2:56627983-56628002 None:intergenic 25.0%
! AGTACATGAATGTGAATTAT+AGG - chr7_2:56628442-56628461 Msa1064160:intron 25.0%
!! TAGAGAAGAATTTTATGATG+TGG - chr7_2:56628512-56628531 Msa1064160:intron 25.0%
!! AGAGAAGAATTTTATGATGT+GGG - chr7_2:56628513-56628532 Msa1064160:intron 25.0%
! TAAGGTTTCTAACAGAAAAT+AGG + chr7_2:56628596-56628615 None:intergenic 25.0%
! ATATTGACATAGCTGATATT+AGG - chr7_2:56628816-56628835 Msa1064160:CDS 25.0%
! TATTGACATAGCTGATATTA+GGG - chr7_2:56628817-56628836 Msa1064160:CDS 25.0%
! AAAAATATCTGGATATGACA+TGG + chr7_2:56628952-56628971 None:intergenic 25.0%
!!! TCCAGATATTTTTATTCATG+GGG - chr7_2:56628959-56628978 Msa1064160:CDS 25.0%
GAAAGAAGGAAAGAAAAATG+AGG + chr7_2:56624428-56624447 None:intergenic 30.0%
GATGATAAGAATGTGAAAGA+AGG + chr7_2:56624442-56624461 None:intergenic 30.0%
ATCATCTTTCACATTCTCAT+CGG - chr7_2:56624611-56624630 Msa1064160:three_prime_UTR 30.0%
! ATGCTTTACCAAAACTTGTT+TGG + chr7_2:56625198-56625217 None:intergenic 30.0%
TGCTTATTATATGAGCTGTT+AGG - chr7_2:56625298-56625317 Msa1064160:intron 30.0%
!! AAAAACGTTTTGGATGAATC+CGG + chr7_2:56625649-56625668 None:intergenic 30.0%
! ATGTTCGCAAAAAAACGTTT+TGG + chr7_2:56625659-56625678 None:intergenic 30.0%
!!! ACGTTTTTTTGCGAACATAA+AGG - chr7_2:56625661-56625680 Msa1064160:intron 30.0%
! ACTCTTCTAATTCTCTGAAA+CGG - chr7_2:56625701-56625720 Msa1064160:intron 30.0%
TATAAGTATGGGAATTGCAT+TGG + chr7_2:56625833-56625852 None:intergenic 30.0%
GAATTGAGTGCTATAAGTAT+GGG + chr7_2:56625844-56625863 None:intergenic 30.0%
AAGTGGCTATGAAATAATGA+AGG + chr7_2:56625927-56625946 None:intergenic 30.0%
! TAATGAGTTGGACTGAATTA+TGG - chr7_2:56626317-56626336 Msa1064160:CDS 30.0%
! AAGTCTTATGTCACTAAGTA+GGG + chr7_2:56626366-56626385 None:intergenic 30.0%
TATTTGATCATAACTTTCCG+TGG + chr7_2:56626878-56626897 None:intergenic 30.0%
TTATATGGTTATGGTTGCAT+AGG - chr7_2:56627117-56627136 Msa1064160:intron 30.0%
!! AAGTGATATTGATGGTTTTG+GGG - chr7_2:56627581-56627600 Msa1064160:intron 30.0%
TAAATAGTTTCCATTGCCAT+AGG + chr7_2:56627618-56627637 None:intergenic 30.0%
ATCTTCTCTCTATGACAATA+AGG - chr7_2:56627694-56627713 Msa1064160:intron 30.0%
TGAATAATCAGCTAAATTGC+AGG - chr7_2:56627737-56627756 Msa1064160:intron 30.0%
!!! AATATTTTAGCTTTACCTGC+TGG - chr7_2:56627920-56627939 Msa1064160:intron 30.0%
!! CTTGTTGACCAATACTTTTT+AGG - chr7_2:56627972-56627991 Msa1064160:intron 30.0%
! ATGATTTTCAGAAAGATACG+TGG - chr7_2:56628010-56628029 Msa1064160:intron 30.0%
ATTAACAATTGCCATTGCAT+TGG - chr7_2:56628254-56628273 Msa1064160:intron 30.0%
TAGACTTGAAGAAGATTTAC+AGG - chr7_2:56628317-56628336 Msa1064160:intron 30.0%
AATGTGAATTATAGGACTCT+TGG - chr7_2:56628450-56628469 Msa1064160:intron 30.0%
AATTATAGGACTCTTGGTTT+GGG - chr7_2:56628456-56628475 Msa1064160:intron 30.0%
TACCATATTAAGCTTAGTTG+CGG + chr7_2:56628490-56628509 None:intergenic 30.0%
GAAATTGTTAGAATATGCGA+GGG - chr7_2:56628535-56628554 Msa1064160:intron 30.0%
TTCTCTCTTCTCTCTTAATT+TGG - chr7_2:56628706-56628725 Msa1064160:intron 30.0%
TCTCTCTTCTCTCTTAATTT+GGG - chr7_2:56628707-56628726 Msa1064160:intron 30.0%
! ATGTCTTCATTCTCTTTTTC+AGG - chr7_2:56628760-56628779 Msa1064160:CDS 30.0%
TATCAGCTATGTCAATATCA+TGG + chr7_2:56628814-56628833 None:intergenic 30.0%
CATCCTGAAAGCTATAATTT+GGG + chr7_2:56628922-56628941 None:intergenic 30.0%
TCATCCTGAAAGCTATAATT+TGG + chr7_2:56628923-56628942 None:intergenic 30.0%
ACCCCATGAATAAAAATATC+TGG + chr7_2:56628963-56628982 None:intergenic 30.0%
ATTACTTTGTTGACGAGTTA+TGG - chr7_2:56629013-56629032 Msa1064160:CDS 30.0%
TCAACTTGATCATTGTTCTT+TGG + chr7_2:56629103-56629122 None:intergenic 30.0%
AGAAGGAAAGAAAAATGAGG+AGG + chr7_2:56624425-56624444 None:intergenic 35.0%
TTCTTCAAAAGAAAGAAGGG+AGG + chr7_2:56624464-56624483 None:intergenic 35.0%
!!! GATGCCGATTTCTTTTATGA+CGG - chr7_2:56624698-56624717 Msa1064160:three_prime_UTR 35.0%
!!! ATGCCGATTTCTTTTATGAC+GGG - chr7_2:56624699-56624718 Msa1064160:three_prime_UTR 35.0%
GATCCCGTCATAAAAGAAAT+CGG + chr7_2:56624705-56624724 None:intergenic 35.0%
CTGAATGGGATTATCAAGTA+TGG - chr7_2:56624877-56624896 Msa1064160:intron 35.0%
TTGATTCATCTGTGCTTCAT+TGG - chr7_2:56624906-56624925 Msa1064160:intron 35.0%
TGATTCATCTGTGCTTCATT+GGG - chr7_2:56624907-56624926 Msa1064160:intron 35.0%
! CATAGATGCCAAACAAGTTT+TGG - chr7_2:56625187-56625206 Msa1064160:intron 35.0%
GCATAGCTCATTTACCTATA+TGG - chr7_2:56625214-56625233 Msa1064160:intron 35.0%
!! ACCTATATGGTGTTGCATTA+AGG - chr7_2:56625227-56625246 Msa1064160:intron 35.0%
AAGGAGAGTAGATTAGATGA+AGG - chr7_2:56625355-56625374 Msa1064160:CDS 35.0%
ATGAAGGATAGTCATATCCA+AGG - chr7_2:56625371-56625390 Msa1064160:CDS 35.0%
!! AACGATTCTGCGTTTTTCAA+CGG + chr7_2:56625508-56625527 None:intergenic 35.0%
ATCGTTTGTATCGTTCGATT+CGG - chr7_2:56625522-56625541 Msa1064160:CDS 35.0%
! AGATTTGAGATCCAGAAATC+CGG - chr7_2:56625551-56625570 Msa1064160:CDS 35.0%
TTAGTAAGTGAAACGCAAAC+CGG + chr7_2:56625598-56625617 None:intergenic 35.0%
! CTTACTAAAGACCAGGTTTT+CGG - chr7_2:56625610-56625629 Msa1064160:intron 35.0%
! TTACTAAAGACCAGGTTTTC+GGG - chr7_2:56625611-56625630 Msa1064160:intron 35.0%
!! AAAACGTTTTGGATGAATCC+GGG + chr7_2:56625648-56625667 None:intergenic 35.0%
TCCAATACACCCATAAATCA+TGG - chr7_2:56625800-56625819 Msa1064160:intron 35.0%
TCCATGATTTATGGGTGTAT+TGG + chr7_2:56625804-56625823 None:intergenic 35.0%
GGTAAGGTTCCATGATTTAT+GGG + chr7_2:56625812-56625831 None:intergenic 35.0%
TGGTAAGGTTCCATGATTTA+TGG + chr7_2:56625813-56625832 None:intergenic 35.0%
GGAATTGAGTGCTATAAGTA+TGG + chr7_2:56625845-56625864 None:intergenic 35.0%
TTGTAGTCTGCAGAACTAAT+GGG + chr7_2:56625903-56625922 None:intergenic 35.0%
ATTGTAGTCTGCAGAACTAA+TGG + chr7_2:56625904-56625923 None:intergenic 35.0%
AGAACAGAACAAAGGGAAAA+TGG + chr7_2:56625964-56625983 None:intergenic 35.0%
GTGTTTGAGAACAGAACAAA+GGG + chr7_2:56625971-56625990 None:intergenic 35.0%
TGTGTTTGAGAACAGAACAA+AGG + chr7_2:56625972-56625991 None:intergenic 35.0%
TACCTTGGTCATATCACTAA+AGG - chr7_2:56626240-56626259 Msa1064160:intron 35.0%
! CAAGTCTTATGTCACTAAGT+AGG + chr7_2:56626367-56626386 None:intergenic 35.0%
CTACTTAGTGACATAAGACT+TGG - chr7_2:56626365-56626384 Msa1064160:CDS 35.0%
GACTTTAGTACCTACTACTT+AGG + chr7_2:56626565-56626584 None:intergenic 35.0%
AAATCCTACCACATGATGAA+GGG + chr7_2:56626587-56626606 None:intergenic 35.0%
AAAATCCTACCACATGATGA+AGG + chr7_2:56626588-56626607 None:intergenic 35.0%
GGGAAAATATATGTTGAGTG+AGG - chr7_2:56626628-56626647 Msa1064160:intron 35.0%
!! CTCATAAGAGGCATTGTAAA+GGG + chr7_2:56627214-56627233 None:intergenic 35.0%
!! TCTCATAAGAGGCATTGTAA+AGG + chr7_2:56627215-56627234 None:intergenic 35.0%
CAATAACTAACACCATACCA+TGG + chr7_2:56627366-56627385 None:intergenic 35.0%
ATTGAGATCAGAGATCTGAA+AGG + chr7_2:56627397-56627416 None:intergenic 35.0%
CTGAGTATACTGAACTTGAA+GGG - chr7_2:56627450-56627469 Msa1064160:intron 35.0%
AATAATTCTATCACTCCAGC+AGG + chr7_2:56627938-56627957 None:intergenic 35.0%
! GAGGATCAATTTTCTCAACT+TGG + chr7_2:56628068-56628087 None:intergenic 35.0%
AAATTGATCCTCTACTACAC+TGG - chr7_2:56628076-56628095 Msa1064160:intron 35.0%
AAAAAGCTGGAGTATACAAC+AGG + chr7_2:56628126-56628145 None:intergenic 35.0%
!!! GTTGTATACTCCAGCTTTTT+TGG - chr7_2:56628126-56628145 Msa1064160:intron 35.0%
GAAGAAGATTTACAGGTACT+TGG - chr7_2:56628324-56628343 Msa1064160:intron 35.0%
GAATTATAGGACTCTTGGTT+TGG - chr7_2:56628455-56628474 Msa1064160:intron 35.0%
ACCATATTAAGCTTAGTTGC+GGG + chr7_2:56628489-56628508 None:intergenic 35.0%
GGAAATTGTTAGAATATGCG+AGG - chr7_2:56628534-56628553 Msa1064160:intron 35.0%
TAGAATATGCGAGGGAATAT+AGG - chr7_2:56628543-56628562 Msa1064160:intron 35.0%
AAAAGAGAAGACTGTCTCTA+AGG + chr7_2:56628614-56628633 None:intergenic 35.0%
!!! TCTTCATTCTCTTTTTCAGG+TGG - chr7_2:56628763-56628782 Msa1064160:CDS 35.0%
CATCCCAAATTATAGCTTTC+AGG - chr7_2:56628916-56628935 Msa1064160:CDS 35.0%
TTATAGCTTTCAGGATGAGA+TGG - chr7_2:56628925-56628944 Msa1064160:CDS 35.0%
! AACGTCTGAAATAAGCTGAT+CGG - chr7_2:56629062-56629081 Msa1064160:CDS 35.0%
ATTGTTGCTCAAAAGTCTCT+TGG + chr7_2:56629172-56629191 None:intergenic 35.0%
AAAGAAAAATGAGGAGGAGG+AGG + chr7_2:56624419-56624438 None:intergenic 40.0%
AGGAAAGAAAAATGAGGAGG+AGG + chr7_2:56624422-56624441 None:intergenic 40.0%
AGAGGGTGGATGGAAATTTA+GGG + chr7_2:56624533-56624552 None:intergenic 40.0%
ATCTTTCACATTCTCATCGG+AGG - chr7_2:56624614-56624633 Msa1064160:three_prime_UTR 40.0%
! TTTATGACGGGATCGATTGT+AGG - chr7_2:56624711-56624730 Msa1064160:three_prime_UTR 40.0%
! TTATGACGGGATCGATTGTA+GGG - chr7_2:56624712-56624731 Msa1064160:three_prime_UTR 40.0%
AGAAGTGAAGACAAGAGAAG+CGG - chr7_2:56624749-56624768 Msa1064160:exon 40.0%
TAACGCTATTGCTGCTGAAT+GGG - chr7_2:56624863-56624882 Msa1064160:intron 40.0%
GCCTTAATGCAACACCATAT+AGG + chr7_2:56625231-56625250 None:intergenic 40.0%
TTGTTTGTCCAACTCCAAAC+AGG + chr7_2:56625253-56625272 None:intergenic 40.0%
! GATTTGAGATCCAGAAATCC+GGG - chr7_2:56625552-56625571 Msa1064160:CDS 40.0%
TAGTAAGTGAAACGCAAACC+GGG + chr7_2:56625597-56625616 None:intergenic 40.0%
CGTTTCACTTACTAAAGACC+AGG - chr7_2:56625603-56625622 Msa1064160:intron 40.0%
! GTATGGGAATTGCATTGGTA+AGG + chr7_2:56625828-56625847 None:intergenic 40.0%
TGTAGTCTGCAGAACTAATG+GGG + chr7_2:56625902-56625921 None:intergenic 40.0%
TCGAGATCCTAAGTAAGATC+GGG + chr7_2:56626213-56626232 None:intergenic 40.0%
CTCGAGATCCTAAGTAAGAT+CGG + chr7_2:56626214-56626233 None:intergenic 40.0%
TGCCTTTAGTGATATGACCA+AGG + chr7_2:56626245-56626264 None:intergenic 40.0%
ACTAAGTAGGGTCAGTTACA+TGG + chr7_2:56626354-56626373 None:intergenic 40.0%
CAAAAGAGGTCCTAAGTAGT+AGG - chr7_2:56626552-56626571 Msa1064160:intron 40.0%
ACTAAAGTCCCTTCATCATG+TGG - chr7_2:56626576-56626595 Msa1064160:intron 40.0%
! TTTTCCCATACACATAGCCA+GGG + chr7_2:56626615-56626634 None:intergenic 40.0%
! ATTTTCCCATACACATAGCC+AGG + chr7_2:56626616-56626635 None:intergenic 40.0%
AATAAATCCAAGTTGCCTCG+AGG - chr7_2:56626666-56626685 Msa1064160:intron 40.0%
ATAAATCCAAGTTGCCTCGA+GGG - chr7_2:56626667-56626686 Msa1064160:intron 40.0%
!! TCTTGGCATATTTGCTGTTG+CGG - chr7_2:56626948-56626967 Msa1064160:intron 40.0%
TTAGGTCCCTTAACTGTCAT+TGG - chr7_2:56627053-56627072 Msa1064160:intron 40.0%
!! ATAATTTTGGGCCTTGTCAC+AGG + chr7_2:56627265-56627284 None:intergenic 40.0%
TGTATTTCGTCAGGCAATCA+CGG + chr7_2:56627428-56627447 None:intergenic 40.0%
TACTCAGCATGTATTTCGTC+AGG + chr7_2:56627437-56627456 None:intergenic 40.0%
GCTGAGTATACTGAACTTGA+AGG - chr7_2:56627449-56627468 Msa1064160:intron 40.0%
!!! ATTGATGGTTTTGGGGTCAT+AGG - chr7_2:56627588-56627607 Msa1064160:intron 40.0%
! AAGTTCTACAGTTCTGACCT+TGG - chr7_2:56627637-56627656 Msa1064160:intron 40.0%
GTATAGTAATCACTGCACCA+AGG + chr7_2:56627657-56627676 None:intergenic 40.0%
TGGTGCAGTGATTACTATAC+AGG - chr7_2:56627657-56627676 Msa1064160:intron 40.0%
GGTGCAGTGATTACTATACA+GGG - chr7_2:56627658-56627677 Msa1064160:intron 40.0%
TGCTTAGGTCTATATGTCTC+AGG - chr7_2:56627781-56627800 Msa1064160:intron 40.0%
TTAGGTCTATATGTCTCAGG+AGG - chr7_2:56627784-56627803 Msa1064160:intron 40.0%
CTTCATGTTTACCTCATCTG+TGG - chr7_2:56627881-56627900 Msa1064160:intron 40.0%
AATAACAGCTTCCACAGATG+AGG + chr7_2:56627895-56627914 None:intergenic 40.0%
!!! GTATACTCCAGCTTTTTTGG+TGG - chr7_2:56628129-56628148 Msa1064160:intron 40.0%
GAAAACAGACGACTGTGAAT+TGG - chr7_2:56628197-56628216 Msa1064160:intron 40.0%
TGCTGCAATAGCATCAATTG+CGG + chr7_2:56628223-56628242 None:intergenic 40.0%
GCATGGGAAATTGCAAATTG+AGG - chr7_2:56628278-56628297 Msa1064160:intron 40.0%
CCATATTAAGCTTAGTTGCG+GGG + chr7_2:56628488-56628507 None:intergenic 40.0%
! TTTCCGATGAGCATTTTCTC+TGG - chr7_2:56628631-56628650 Msa1064160:intron 40.0%
! TTCCGATGAGCATTTTCTCT+GGG - chr7_2:56628632-56628651 Msa1064160:intron 40.0%
ATCCCAGAGAAAATGCTCAT+CGG + chr7_2:56628637-56628656 None:intergenic 40.0%
!!! GCATTTTCTCTGGGATTACA+CGG - chr7_2:56628641-56628660 Msa1064160:intron 40.0%
!!! CATTTTCTCTGGGATTACAC+GGG - chr7_2:56628642-56628661 Msa1064160:intron 40.0%
!!! ATTCTCTTTTTCAGGTGGAC+AGG - chr7_2:56628768-56628787 Msa1064160:CDS 40.0%
TCATCACCAGTTGCATTTCT+TGG - chr7_2:56628848-56628867 Msa1064160:CDS 40.0%
GACAAACCAAGAAATGCAAC+TGG + chr7_2:56628857-56628876 None:intergenic 40.0%
! ACGTCTGAAATAAGCTGATC+GGG - chr7_2:56629063-56629082 Msa1064160:CDS 40.0%
AAATAAGCTGATCGGGAGTT+AGG - chr7_2:56629070-56629089 Msa1064160:CDS 40.0%
!! CAATGATCAAGTTGAGTCTC+CGG - chr7_2:56629108-56629127 Msa1064160:CDS 40.0%
CCGATCGTACAAAATCTATC+CGG + chr7_2:56629130-56629149 None:intergenic 40.0%
! CCGGATAGATTTTGTACGAT+CGG - chr7_2:56629127-56629146 Msa1064160:CDS 40.0%
GAGAGGGTGGATGGAAATTT+AGG + chr7_2:56624534-56624553 None:intergenic 45.0%
AAGACAAGAGAAGCGGATGA+TGG - chr7_2:56624756-56624775 Msa1064160:CDS 45.0%
! AGAGAAGCGGATGATGGTAA+TGG - chr7_2:56624762-56624781 Msa1064160:CDS 45.0%
!! AAGCGGATGATGGTAATGGT+TGG - chr7_2:56624766-56624785 Msa1064160:CDS 45.0%
GCAACAGTAGGAAGCTTAAG+CGG + chr7_2:56624837-56624856 None:intergenic 45.0%
CTAACGCTATTGCTGCTGAA+TGG - chr7_2:56624862-56624881 Msa1064160:intron 45.0%
AATATCCGTGCTTCACGGTT+TGG + chr7_2:56625043-56625062 None:intergenic 45.0%
GTGTCAATATCCGTGCTTCA+CGG + chr7_2:56625048-56625067 None:intergenic 45.0%
TGAAGCACGGATATTGACAC+CGG - chr7_2:56625048-56625067 Msa1064160:intron 45.0%
GCACAGACACTCCTCAAATT+AGG + chr7_2:56625165-56625184 None:intergenic 45.0%
GTGTTGCATTAAGGCCTGTT+TGG - chr7_2:56625236-56625255 Msa1064160:intron 45.0%
! CATTAAGGCCTGTTTGGAGT+TGG - chr7_2:56625242-56625261 Msa1064160:intron 45.0%
AAGTCGTCGGAATCGGAAAT+TGG - chr7_2:56625464-56625483 Msa1064160:CDS 45.0%
!!! TAAAGACCAGGTTTTCGGGT+CGG - chr7_2:56625615-56625634 Msa1064160:intron 45.0%
GTAGTCTGCAGAACTAATGG+GGG + chr7_2:56625901-56625920 None:intergenic 45.0%
TGAATCGGAGGATCGTAACA+CGG + chr7_2:56626173-56626192 None:intergenic 45.0%
GATCCTAAGTAAGATCGGGT+AGG + chr7_2:56626209-56626228 None:intergenic 45.0%
GATCTCGAGTTTGTCTACCT+TGG - chr7_2:56626225-56626244 Msa1064160:intron 45.0%
AAGTCCCTTCATCATGTGGT+AGG - chr7_2:56626580-56626599 Msa1064160:intron 45.0%
! GTGGTAGGATTTTCTATCCC+TGG - chr7_2:56626595-56626614 Msa1064160:intron 45.0%
TCTATCCCTGGCTATGTGTA+TGG - chr7_2:56626607-56626626 Msa1064160:intron 45.0%
CTATCCCTGGCTATGTGTAT+GGG - chr7_2:56626608-56626627 Msa1064160:intron 45.0%
TAAATCCAAGTTGCCTCGAG+GGG - chr7_2:56626668-56626687 Msa1064160:intron 45.0%
AGTTGCATGTGGGGATACTT+TGG - chr7_2:56626701-56626720 Msa1064160:intron 45.0%
GCATTGAAACCTCACTACCA+CGG - chr7_2:56626858-56626877 Msa1064160:intron 45.0%
! CATAACTTTCCGTGGTAGTG+AGG + chr7_2:56626870-56626889 None:intergenic 45.0%
GTGCAAGCAAGTCTCATAAG+AGG + chr7_2:56627226-56627245 None:intergenic 45.0%
! ATACTGAACTTGAAGGGTGC+TGG - chr7_2:56627456-56627475 Msa1064160:intron 45.0%
!! TACTGAACTTGAAGGGTGCT+GGG - chr7_2:56627457-56627476 Msa1064160:intron 45.0%
TGATCCTCTACTACACTGGT+TGG - chr7_2:56628080-56628099 Msa1064160:intron 45.0%
! CACTGGTTGGAGTCAGAATT+TGG - chr7_2:56628093-56628112 Msa1064160:intron 45.0%
CTGCTTTCCACCAAAAAAGC+TGG + chr7_2:56628139-56628158 None:intergenic 45.0%
!!! CAGCTTTTTTGGTGGAAAGC+AGG - chr7_2:56628137-56628156 Msa1064160:intron 45.0%
TTTGGTGGAAAGCAGGAAGA+TGG - chr7_2:56628144-56628163 Msa1064160:intron 45.0%
! ATTGCCATTGCATTGGTGCA+TGG - chr7_2:56628261-56628280 Msa1064160:intron 45.0%
! TTGCCATTGCATTGGTGCAT+GGG - chr7_2:56628262-56628281 Msa1064160:intron 45.0%
TTTCCCATGCACCAATGCAA+TGG + chr7_2:56628268-56628287 None:intergenic 45.0%
CCCCGCAACTAAGCTTAATA+TGG - chr7_2:56628485-56628504 Msa1064160:intron 45.0%
!!! TCTTTTTCAGGTGGACAGGT+GGG - chr7_2:56628772-56628791 Msa1064160:CDS 45.0%
TATCATGGCCACCTTCAACA+AGG + chr7_2:56628799-56628818 None:intergenic 45.0%
!! ATGGGGTCTTGTTCTGTAGA+TGG - chr7_2:56628976-56628995 Msa1064160:CDS 45.0%
!! TGGGGTCTTGTTCTGTAGAT+GGG - chr7_2:56628977-56628996 Msa1064160:CDS 45.0%
GACGAGTTATGGTGCTCTAT+AGG - chr7_2:56629024-56629043 Msa1064160:CDS 45.0%
CAGACGTTGAACAATCTGAC+AGG + chr7_2:56629050-56629069 None:intergenic 45.0%
! CTTTTGAGCAACAATGCGAG+AGG - chr7_2:56629177-56629196 Msa1064160:five_prime_UTR 45.0%
!!! TATATATGAATTTTTAAATT+TGG - chr7_2:56626133-56626152 Msa1064160:intron 5.0%
!! AAAAAATGAATTAATATTTA+TGG + chr7_2:56627815-56627834 None:intergenic 5.0%
GAGGAGGAGGAGGATAGTTT+GGG + chr7_2:56624397-56624416 None:intergenic 50.0%
GAAAAATGAGGAGGAGGAGG+AGG + chr7_2:56624416-56624435 None:intergenic 50.0%
AGATGATGACTGCTCCTCGT+CGG + chr7_2:56624598-56624617 None:intergenic 50.0%
CGGGATCGATTGTAGGGAAA+AGG - chr7_2:56624718-56624737 Msa1064160:three_prime_UTR 50.0%
AGCTTAAGCGGTCTCTTAGC+AGG + chr7_2:56624825-56624844 None:intergenic 50.0%
GCGTTAGCAAGAGCAACAGT+AGG + chr7_2:56624849-56624868 None:intergenic 50.0%
GAATGCCAAACCGTGAAGCA+CGG - chr7_2:56625035-56625054 Msa1064160:intron 50.0%
TCCTCAAATTAGGCGTGTCC+CGG + chr7_2:56625155-56625174 None:intergenic 50.0%
GATCGCGAGTTTGTCTACCT+TGG + chr7_2:56625391-56625410 None:intergenic 50.0%
AAACTCGCGATCCAACTCGT+AGG - chr7_2:56625399-56625418 Msa1064160:CDS 50.0%
GGGAGGTGAGATCGTAAACT+CGG + chr7_2:56625430-56625449 None:intergenic 50.0%
TTCCGATTCCGACGACTTTC+CGG + chr7_2:56625462-56625481 None:intergenic 50.0%
TCGTCGGAATCGGAAATTGG+TGG - chr7_2:56625467-56625486 Msa1064160:CDS 50.0%
! GAATCGGAAATTGGTGGTCG+CGG - chr7_2:56625473-56625492 Msa1064160:CDS 50.0%
!!! AAAGACCAGGTTTTCGGGTC+GGG - chr7_2:56625616-56625635 Msa1064160:intron 50.0%
TCCTCCGATTCACGATCTCA+TGG - chr7_2:56626181-56626200 Msa1064160:intron 50.0%
CCTCCGATTCACGATCTCAT+GGG - chr7_2:56626182-56626201 Msa1064160:intron 50.0%
GGACCCATGAGATCGTGAAT+CGG + chr7_2:56626188-56626207 None:intergenic 50.0%
GGTCCTACCCGATCTTACTT+AGG - chr7_2:56626203-56626222 Msa1064160:intron 50.0%
TTAGCGTCGCAGTTGCATGT+GGG - chr7_2:56626691-56626710 Msa1064160:intron 50.0%
! ACAATCGGTTCAGCTGCAGT+TGG - chr7_2:56626897-56626916 Msa1064160:intron 50.0%
! CAATCGGTTCAGCTGCAGTT+GGG - chr7_2:56626898-56626917 Msa1064160:intron 50.0%
! AATCGGTTCAGCTGCAGTTG+GGG - chr7_2:56626899-56626918 Msa1064160:intron 50.0%
TTGCTTGCACTGCCTTGGAA+AGG - chr7_2:56627236-56627255 Msa1064160:intron 50.0%
TGCTTGCACTGCCTTGGAAA+GGG - chr7_2:56627237-56627256 Msa1064160:intron 50.0%
TGTCACAGGAACCCTTTCCA+AGG + chr7_2:56627251-56627270 None:intergenic 50.0%
TGGAAAGGGTTCCTGTGACA+AGG - chr7_2:56627251-56627270 Msa1064160:intron 50.0%
GTTCACTGTCATCAGGAGCA+CGG + chr7_2:56627330-56627349 None:intergenic 50.0%
CTTGCGAGTTCACTGTCATC+AGG + chr7_2:56627337-56627356 None:intergenic 50.0%
TGACAGTGAACTCGCAAGCT+TGG - chr7_2:56627339-56627358 Msa1064160:intron 50.0%
!! ACTGAACTTGAAGGGTGCTG+GGG - chr7_2:56627458-56627477 Msa1064160:intron 50.0%
CATAGGCTTGCCTATGGCAA+TGG - chr7_2:56627605-56627624 Msa1064160:intron 50.0%
TCTCAACTTGGCGTTCTGCA+AGG + chr7_2:56628056-56628075 None:intergenic 50.0%
GACTCCAACCAGTGTAGTAG+AGG + chr7_2:56628087-56628106 None:intergenic 50.0%
!! GCAGGAAGATGGTCTTGTGA+TGG - chr7_2:56628155-56628174 Msa1064160:intron 50.0%
TAAGCTTAGTTGCGGGGCTT+AGG + chr7_2:56628482-56628501 None:intergenic 50.0%
GAGGGAATATAGGAGCAGAG+AGG - chr7_2:56628553-56628572 Msa1064160:intron 50.0%
TATAGGAGCAGAGAGGAGAG+TGG - chr7_2:56628560-56628579 Msa1064160:intron 50.0%
ATAGGAGCAGAGAGGAGAGT+GGG - chr7_2:56628561-56628580 Msa1064160:intron 50.0%
!!! CTCTTTTTCAGGTGGACAGG+TGG - chr7_2:56628771-56628790 Msa1064160:CDS 50.0%
!!! CTTTTTCAGGTGGACAGGTG+GGG - chr7_2:56628773-56628792 Msa1064160:CDS 50.0%
!! GGGGTCTTGTTCTGTAGATG+GGG - chr7_2:56628978-56628997 Msa1064160:CDS 50.0%
GGAGGAGGAGGAGGATAGTT+TGG + chr7_2:56624398-56624417 None:intergenic 55.0%
AAATGAGGAGGAGGAGGAGG+AGG + chr7_2:56624413-56624432 None:intergenic 55.0%
! CCACCTGAAATCACCGACTG+CGG - chr7_2:56624647-56624666 Msa1064160:three_prime_UTR 55.0%
GAGGCGTAAACTGTCGTCGT+CGG - chr7_2:56624671-56624690 Msa1064160:three_prime_UTR 55.0%
CGGATATTGACACCGGACAC+TGG - chr7_2:56625055-56625074 Msa1064160:intron 55.0%
TGTGTCAGCATGCCAGTGTC+CGG + chr7_2:56625070-56625089 None:intergenic 55.0%
AAGTGTCACGTGTCCGACAC+CGG - chr7_2:56625133-56625152 Msa1064160:intron 55.0%
AATTAGGCGTGTCCCGGTGT+CGG + chr7_2:56625149-56625168 None:intergenic 55.0%
ACCGGGACACGCCTAATTTG+AGG - chr7_2:56625151-56625170 Msa1064160:intron 55.0%
ACTCGGACGATCCTACGAGT+TGG + chr7_2:56625413-56625432 None:intergenic 55.0%
ATTCCGACGACTTTCCGGCA+CGG + chr7_2:56625457-56625476 None:intergenic 55.0%
TGCCGGAAAGTCGTCGGAAT+CGG - chr7_2:56625457-56625476 Msa1064160:CDS 55.0%
! GGAAATTGGTGGTCGCGGTT+TGG - chr7_2:56625478-56625497 Msa1064160:CDS 55.0%
GATCCAGAAATCCGGGTTCG+CGG - chr7_2:56625559-56625578 Msa1064160:CDS 55.0%
ATCCAGAAATCCGGGTTCGC+GGG - chr7_2:56625560-56625579 Msa1064160:CDS 55.0%
CCCATGAGATCGTGAATCGG+AGG + chr7_2:56626185-56626204 None:intergenic 55.0%
GTTAGCGTCGCAGTTGCATG+TGG - chr7_2:56626690-56626709 Msa1064160:intron 55.0%
TAGCGTCGCAGTTGCATGTG+GGG - chr7_2:56626692-56626711 Msa1064160:intron 55.0%
! GAGACTTGCTTGCACTGCCT+TGG - chr7_2:56627231-56627250 Msa1064160:intron 55.0%
GAACTCGCAAGCTTGGTCCA+TGG - chr7_2:56627346-56627365 Msa1064160:intron 55.0%
CGCAAGCTTGGTCCATGGTA+TGG - chr7_2:56627351-56627370 Msa1064160:intron 55.0%
TGGGGTCATAGGCTTGCCTA+TGG - chr7_2:56627599-56627618 Msa1064160:intron 55.0%
TAGGAGCAGAGAGGAGAGTG+GGG - chr7_2:56628562-56628581 Msa1064160:intron 55.0%
CATCCACCCTCTCAGCTCAC+CGG - chr7_2:56624541-56624560 Msa1064160:three_prime_UTR 60.0%
GACACTCCGGTGAGCTGAGA+GGG + chr7_2:56624550-56624569 None:intergenic 60.0%
! TCTCAGCTCACCGGAGTGTC+CGG - chr7_2:56624550-56624569 Msa1064160:three_prime_UTR 60.0%
AGCCAAAACGCCGGACACTC+CGG + chr7_2:56624563-56624582 None:intergenic 60.0%
CCGCAGTCGGTGATTTCAGG+TGG + chr7_2:56624650-56624669 None:intergenic 60.0%
TCGCCGCAGTCGGTGATTTC+AGG + chr7_2:56624653-56624672 None:intergenic 60.0%
! TGAAATCACCGACTGCGGCG+AGG - chr7_2:56624652-56624671 Msa1064160:three_prime_UTR 60.0%
AGTTTACGCCTCGCCGCAGT+CGG + chr7_2:56624663-56624682 None:intergenic 60.0%
AGTGTCACGTGTCCGACACC+GGG - chr7_2:56625134-56625153 Msa1064160:intron 60.0%
ACGACTTTCCGGCACGGCAA+GGG + chr7_2:56625451-56625470 None:intergenic 60.0%
TTGCCGTGCCGGAAAGTCGT+CGG - chr7_2:56625451-56625470 Msa1064160:CDS 60.0%
AGAAATCCGGGTTCGCGGGT+CGG - chr7_2:56625564-56625583 Msa1064160:CDS 60.0%
CAAGACCCGACCCGAAAACC+TGG + chr7_2:56625624-56625643 None:intergenic 60.0%
! TTTCGGGTCGGGTCTTGACC+CGG - chr7_2:56625627-56625646 Msa1064160:intron 60.0%
GCTAACCCCTCGAGGCAACT+TGG + chr7_2:56626676-56626695 None:intergenic 60.0%
AGCTGCAGTTGGGGTCGCAA+AGG - chr7_2:56626908-56626927 Msa1064160:intron 60.0%
AGGAGCAGAGAGGAGAGTGG+GGG - chr7_2:56628563-56628582 Msa1064160:intron 60.0%
!! GACAGGTGGGGCCTTGTTGA+AGG - chr7_2:56628785-56628804 Msa1064160:CDS 60.0%
!! AGGTGGGGCCTTGTTGAAGG+TGG - chr7_2:56628788-56628807 Msa1064160:CDS 60.0%
TGAGGAGGAGGAGGAGGAGG+AGG + chr7_2:56624410-56624429 None:intergenic 65.0%
CGGTGAGCTGAGAGGGTGGA+TGG + chr7_2:56624543-56624562 None:intergenic 65.0%
ACTCCGGTGAGCTGAGAGGG+TGG + chr7_2:56624547-56624566 None:intergenic 65.0%
GGACACTCCGGTGAGCTGAG+AGG + chr7_2:56624551-56624570 None:intergenic 65.0%
!! CACCGGAGTGTCCGGCGTTT+TGG - chr7_2:56624558-56624577 Msa1064160:three_prime_UTR 65.0%
!!! TGTCCGGCGTTTTGGCTCCG+CGG - chr7_2:56624566-56624585 Msa1064160:three_prime_UTR 65.0%
CGACTTTCCGGCACGGCAAG+GGG + chr7_2:56625450-56625469 None:intergenic 65.0%
GACGACTTTCCGGCACGGCA+AGG + chr7_2:56625452-56625471 None:intergenic 65.0%
GACCCGCGAACCCGGATTTC+TGG + chr7_2:56625565-56625584 None:intergenic 65.0%
ACTGCGACGCTAACCCCTCG+AGG + chr7_2:56626684-56626703 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr7_2:56624404-56624423 None:intergenic 70.0%
CTCACCTCCCCTTGCCGTGC+CGG - chr7_2:56625440-56625459 Msa1064160:CDS 70.0%
CTTTCCGGCACGGCAAGGGG+AGG + chr7_2:56625447-56625466 None:intergenic 70.0%
CGAGAACCGACCCGCGAACC+CGG + chr7_2:56625573-56625592 None:intergenic 70.0%
! TCGCGGGTCGGTTCTCGACC+CGG - chr7_2:56625576-56625595 Msa1064160:intron 70.0%
CCGCCGCGGAGCCAAAACGC+CGG + chr7_2:56624572-56624591 None:intergenic 75.0%
!!! CCGGCGTTTTGGCTCCGCGG+CGG - chr7_2:56624569-56624588 Msa1064160:three_prime_UTR 75.0%
!!! GCGTTTTGGCTCCGCGGCGG+CGG - chr7_2:56624572-56624591 Msa1064160:three_prime_UTR 75.0%
! CTCCTCGTCGGCCGCCGCCG+CGG + chr7_2:56624586-56624605 None:intergenic 85.0%
! CTCCGCGGCGGCGGCCGACG+AGG - chr7_2:56624581-56624600 Msa1064160:three_prime_UTR 90.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 56624389 56629256 56624389 ID=Msa1064160;Name=Msa1064160
chr7_2 mRNA 56624389 56629256 56624389 ID=Msa1064160-mRNA-1;Parent=Msa1064160;Name=Msa1064160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=100|1|1|1|0.66|1|4|367|321
chr7_2 exon 56624389 56624863 56624389 ID=Msa1064160-mRNA-1:exon:10704;Parent=Msa1064160-mRNA-1
chr7_2 exon 56625307 56625584 56625307 ID=Msa1064160-mRNA-1:exon:10703;Parent=Msa1064160-mRNA-1
chr7_2 exon 56626278 56626452 56626278 ID=Msa1064160-mRNA-1:exon:10702;Parent=Msa1064160-mRNA-1
chr7_2 exon 56628752 56629256 56628752 ID=Msa1064160-mRNA-1:exon:10701;Parent=Msa1064160-mRNA-1
chr7_2 five_prime_UTR 56629157 56629256 56629157 ID=Msa1064160-mRNA-1:five_prime_utr;Parent=Msa1064160-mRNA-1
chr7_2 CDS 56628752 56629156 56628752 ID=Msa1064160-mRNA-1:cds;Parent=Msa1064160-mRNA-1
chr7_2 CDS 56626278 56626452 56626278 ID=Msa1064160-mRNA-1:cds;Parent=Msa1064160-mRNA-1
chr7_2 CDS 56625307 56625584 56625307 ID=Msa1064160-mRNA-1:cds;Parent=Msa1064160-mRNA-1
chr7_2 CDS 56624756 56624863 56624756 ID=Msa1064160-mRNA-1:cds;Parent=Msa1064160-mRNA-1
chr7_2 three_prime_UTR 56624389 56624755 56624389 ID=Msa1064160-mRNA-1:three_prime_utr;Parent=Msa1064160-mRNA-1
Gene Sequence

>Msa1064160

ATGGCTCACTCATTAATAAAAAATTCAATCAAATCAATAAACCCTAAATTTCCATCCACCCTCTCAGCTCACCGGAGTGTCCGGCGTTTTGGCTCCGCGGCGGCGGCCGACGAGGAGCAGTCATCATCTTTCACATTCTCATCGGAGGCAGACAACATCCACCTGAAATCACCGACTGCGGCGAGGCGTAAACTGTCGTCGTCGGTGACGATGCCGATTTCTTTTATGACGGGATCGATTGTAGGGAAAAGGTTTTACAAAGAAGTGAAGACAAGAGAAGCGGATGATGGTAATGGTTGGACTGTGATGCTTGATTATAGAACGCTTAAGACTCCTGCTAAGAGACCGCTTAAGCTTCCTACTGTTGCTCTTGCTAACGCTATTGCTGCTGAATGGGATTATCAACAAATAGATGGCATAAGACCCTTTACAATGCCTCTTATGAGACTTGCTTGCACTGCCTTGGAAAGGGTTCCTGTGACAAGGCCCAAAATTATTGAGCATTTGATGAAGAAATTTAATCAAGATTTAGTATTTTGCCGTGCTCCTGATGACAGTGAACTCGCAAGCTTGGTCCATGAACGCCAAGTTGAGAAAATTGATCCTCTACTACACTGGTTGGAGTCAGAATTTGGCTTTAAGCCTGTTGTATACTCCAGCTTTTTTGGTGGAAAGCAGGAAGATGGTCTTGTGATGGCTATAGAGAAACTTCTAAAGAAAACAGACGACTGTGAATTGGCCGCAATTGATGCTATTGCAGCATCAGCGCAGTCATTAACAATTGCCATTGCATTGGTGCATGGGAAATTGCAAATTGAGGAAGCAGTTGAGCTTATTAGACTTGAAGAAGATTTACAGGTGGACAGGTGGGGCCTTGTTGAAGGTGGCCATGATATTGACATAGCTGATATTAGGGTACAGATTTCATCACCAGTTGCATTTCTTGGTTTGTCAAGAAATATGTAG
Protein sequence

>Msa1064160

MAHSLIKNSIKSINPKFPSTLSAHRSVRRFGSAAAADEEQSSSFTFSSEADNIHLKSPTAARRKLSSSVTMPISFMTGSIVGKRFYKEVKTREADDGNGWTVMLDYRTLKTPAKRPLKLPTVALANAIAAEWDYQQIDGIRPFTMPLMRLACTALERVPVTRPKIIEHLMKKFNQDLVFCRAPDDSELASLVHERQVEKIDPLLHWLESEFGFKPVVYSSFFGGKQEDGLVMAIEKLLKKTDDCELAAIDAIAASAQSLTIAIALVHGKLQIEEAVELIRLEEDLQVDRWGLVEGGHDIDIADIRVQISSPVAFLGLSRNM*