Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066870 | AQZ26214.1 | 100.000 | 379 | 0 | 0 | 1 | 379 | 1 | 379 | 0.0 | 781 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066870 | sp|Q1KLZ2|CAS1_MALDO | 83.465 | 381 | 54 | 3 | 1 | 379 | 1 | 374 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066870 | A0A1U9XPL9 | 100.000 | 379 | 0 | 0 | 1 | 379 | 1 | 379 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0765040 | Msa1066870 | 0.802474 | 5.515418e-49 | -8.615850e-47 |
| Msa0371180 | Msa1066870 | 0.852963 | 3.268125e-61 | -8.615850e-47 |
| Msa0422500 | Msa1066870 | 0.812937 | 3.297650e-51 | -8.615850e-47 |
| Msa0450350 | Msa1066870 | 0.803405 | 3.541189e-49 | -8.615850e-47 |
| Msa1028270 | Msa1066870 | 0.822879 | 1.870613e-53 | -8.615850e-47 |
| Msa1066870 | Msa1112370 | 0.843992 | 9.958262e-59 | -8.615850e-47 |
| Msa1066870 | Msa1212800 | 0.802966 | 4.366255e-49 | -8.615850e-47 |
| Msa1066870 | Msa1213020 | 0.803707 | 3.065238e-49 | -8.615850e-47 |
| Msa1066870 | Msa1225820 | 0.810016 | 1.421467e-50 | -8.615850e-47 |
| Msa1066870 | Msa1260200 | 0.808850 | 2.529318e-50 | -8.615850e-47 |
| Msa1066870 | Msa1300090 | 0.833410 | 5.418276e-56 | -8.615850e-47 |
| Msa0511250 | Msa1066870 | 0.823948 | 1.052064e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066870 | MtrunA17_Chr7g0248021 | 99.211 | 380 | 2 | 1 | 1 | 379 | 1 | 380 | 0.0 | 773 |
| Msa1066870 | MtrunA17_Chr4g0045721 | 56.583 | 357 | 143 | 4 | 21 | 375 | 16 | 362 | 7.22e-145 | 415 |
| Msa1066870 | MtrunA17_Chr1g0191041 | 62.975 | 316 | 117 | 0 | 58 | 373 | 6 | 321 | 4.00e-137 | 394 |
| Msa1066870 | MtrunA17_Chr5g0394491 | 62.025 | 316 | 120 | 0 | 58 | 373 | 6 | 321 | 6.76e-137 | 393 |
| Msa1066870 | MtrunA17_Chr4g0045781 | 61.059 | 321 | 125 | 0 | 55 | 375 | 61 | 381 | 8.94e-137 | 395 |
| Msa1066870 | MtrunA17_Chr1g0191051 | 61.465 | 314 | 121 | 0 | 60 | 373 | 7 | 320 | 2.29e-135 | 389 |
| Msa1066870 | MtrunA17_Chr1g0205381 | 61.709 | 316 | 121 | 0 | 58 | 373 | 6 | 321 | 3.12e-134 | 386 |
| Msa1066870 | MtrunA17_Chr4g0045771 | 56.782 | 317 | 128 | 2 | 59 | 375 | 46 | 353 | 9.56e-133 | 384 |
| Msa1066870 | MtrunA17_Chr1g0191061 | 53.371 | 356 | 120 | 2 | 64 | 373 | 25 | 380 | 8.96e-122 | 357 |
| Msa1066870 | MtrunA17_Chr7g0254401 | 50.578 | 346 | 157 | 3 | 28 | 373 | 37 | 368 | 2.21e-115 | 340 |
| Msa1066870 | MtrunA17_Chr1g0191071 | 56.015 | 266 | 112 | 1 | 108 | 373 | 1 | 261 | 5.26e-97 | 289 |
| Msa1066870 | MtrunA17_Chr5g0446431 | 29.226 | 349 | 188 | 6 | 68 | 359 | 52 | 398 | 3.22e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1066870 | AT3G61440.1 | 80.398 | 352 | 65 | 1 | 28 | 379 | 21 | 368 | 0.0 | 575 |
| Msa1066870 | AT3G61440.4 | 79.392 | 296 | 57 | 1 | 28 | 323 | 21 | 312 | 1.18e-169 | 477 |
| Msa1066870 | AT3G61440.2 | 84.559 | 272 | 42 | 0 | 108 | 379 | 1 | 272 | 2.22e-166 | 466 |
| Msa1066870 | AT3G61440.3 | 85.020 | 247 | 37 | 0 | 133 | 379 | 1 | 247 | 4.55e-151 | 426 |
| Msa1066870 | AT3G59760.1 | 60.870 | 322 | 126 | 0 | 57 | 378 | 110 | 431 | 9.37e-140 | 405 |
| Msa1066870 | AT3G59760.3 | 61.129 | 319 | 124 | 0 | 57 | 375 | 110 | 428 | 9.87e-140 | 405 |
| Msa1066870 | AT4G14880.5 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 9.59e-137 | 393 |
| Msa1066870 | AT4G14880.3 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 9.59e-137 | 393 |
| Msa1066870 | AT4G14880.4 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 9.59e-137 | 393 |
| Msa1066870 | AT4G14880.2 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 9.59e-137 | 393 |
| Msa1066870 | AT4G14880.1 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 9.59e-137 | 393 |
| Msa1066870 | AT2G43750.1 | 59.561 | 319 | 129 | 0 | 57 | 375 | 72 | 390 | 4.98e-136 | 394 |
| Msa1066870 | AT2G43750.2 | 59.561 | 319 | 129 | 0 | 57 | 375 | 72 | 390 | 4.98e-136 | 394 |
| Msa1066870 | AT3G59760.2 | 60.690 | 290 | 114 | 0 | 57 | 346 | 110 | 399 | 1.23e-123 | 363 |
| Msa1066870 | AT3G04940.1 | 56.646 | 316 | 137 | 0 | 58 | 373 | 6 | 321 | 5.93e-123 | 358 |
| Msa1066870 | AT3G04940.2 | 56.646 | 316 | 137 | 0 | 58 | 373 | 6 | 321 | 5.93e-123 | 358 |
| Msa1066870 | AT5G28020.2 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.36e-116 | 341 |
| Msa1066870 | AT5G28020.4 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.36e-116 | 341 |
| Msa1066870 | AT5G28020.1 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.36e-116 | 341 |
| Msa1066870 | AT5G28020.3 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.36e-116 | 341 |
| Msa1066870 | AT5G28020.6 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.36e-116 | 341 |
| Msa1066870 | AT3G22460.1 | 60.150 | 266 | 86 | 1 | 108 | 373 | 1 | 246 | 3.08e-112 | 328 |
| Msa1066870 | AT5G28030.1 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.33e-112 | 330 |
| Msa1066870 | AT5G28030.4 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.33e-112 | 330 |
| Msa1066870 | AT5G28030.5 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.33e-112 | 330 |
| Msa1066870 | AT5G28030.2 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.33e-112 | 330 |
| Msa1066870 | AT3G03630.1 | 54.114 | 316 | 135 | 1 | 59 | 374 | 98 | 403 | 1.74e-110 | 329 |
| Msa1066870 | AT5G28030.3 | 53.968 | 252 | 116 | 0 | 60 | 311 | 7 | 258 | 1.10e-86 | 263 |
| Msa1066870 | AT3G22460.2 | 62.088 | 182 | 69 | 0 | 59 | 240 | 7 | 188 | 2.57e-81 | 247 |
| Msa1066870 | AT5G28020.5 | 54.701 | 234 | 106 | 0 | 140 | 373 | 1 | 234 | 2.16e-78 | 241 |
| Msa1066870 | AT1G55880.1 | 28.906 | 384 | 209 | 9 | 41 | 365 | 21 | 399 | 2.10e-38 | 142 |
| Msa1066870 | AT1G55880.2 | 29.259 | 270 | 149 | 4 | 41 | 269 | 21 | 289 | 1.12e-31 | 123 |
Find 123 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATCAGTTTGGCATTTA+TGG | 0.111575 | 7_2:-60994234 | Msa1066870:CDS |
| GAAGAAGAAGAAGGAGAATT+TGG | 0.156763 | 7_2:+60995630 | None:intergenic |
| GAGAAAATCACCTTAACATT+AGG | 0.229682 | 7_2:+60993469 | None:intergenic |
| GGTAGCGGAGGCACGGTTTC+CGG | 0.231220 | 7_2:-60993520 | Msa1066870:CDS |
| TTTCAATCATATTAGATATA+TGG | 0.257432 | 7_2:-60993375 | Msa1066870:intron |
| CACTGTTCCTCCCATTCCTT+TGG | 0.269450 | 7_2:+60994103 | None:intergenic |
| GTAGCGGAGGCACGGTTTCC+GGG | 0.287571 | 7_2:-60993519 | Msa1066870:CDS |
| CAGACTGTTCATCCAAGTTT+CGG | 0.294327 | 7_2:-60992594 | Msa1066870:CDS |
| ACAACTAGAAAGCTTTCTTA+TGG | 0.294408 | 7_2:-60992472 | Msa1066870:three_prime_UTR |
| AGAAAATCACCTTAACATTA+GGG | 0.297633 | 7_2:+60993470 | None:intergenic |
| AACCTTACCTTAGTATTGGC+TGG | 0.308983 | 7_2:+60994017 | None:intergenic |
| AAACAACAGGTCCTGAGATA+TGG | 0.318320 | 7_2:-60993585 | Msa1066870:CDS |
| CAGCTTCTGTCCGAAGGTCT+TGG | 0.322978 | 7_2:+60992544 | None:intergenic |
| AGGGTTTGTATGAGAGCATT+TGG | 0.332544 | 7_2:-60994152 | Msa1066870:CDS |
| TCGATTCAACTAACCTTTCC+AGG | 0.333739 | 7_2:+60994369 | None:intergenic |
| AGACTGTTCATCCAAGTTTC+GGG | 0.334413 | 7_2:-60992593 | Msa1066870:CDS |
| ATGTAAATTGTGTCTTCTTT+TGG | 0.342124 | 7_2:-60992224 | Msa1066870:three_prime_UTR |
| TTACATCATACTCACAATTT+CGG | 0.345815 | 7_2:+60992241 | None:intergenic |
| GACATATTTGTGATGGGAAT+AGG | 0.357383 | 7_2:-60993541 | Msa1066870:CDS |
| ACAGGTCCTCATCAAATAAC+TGG | 0.359927 | 7_2:-60993214 | Msa1066870:intron |
| GTTCCTCCCATTCCTTTGGT+TGG | 0.365478 | 7_2:+60994107 | None:intergenic |
| TTCTAGGTTGGTATATCGTC+TGG | 0.366637 | 7_2:-60992837 | Msa1066870:intron |
| AATGGGAGGAACAGTGAAAA+AGG | 0.372245 | 7_2:-60994096 | Msa1066870:CDS |
| AATGCAAGAATCGAGAAATT+AGG | 0.379372 | 7_2:+60995740 | None:intergenic |
| TACCATGAGTCCTTCTTTCA+AGG | 0.380319 | 7_2:+60992992 | None:intergenic |
| TGTTGCAGCATAAAAGCATT+TGG | 0.385420 | 7_2:+60994050 | None:intergenic |
| ATCAGTTTGCCTTTGTTCTC+AGG | 0.389149 | 7_2:+60992777 | None:intergenic |
| AACCATCTTATATCCCTTCA+TGG | 0.389444 | 7_2:+60994208 | None:intergenic |
| ATGCTTTGTAATGTTCTGTT+TGG | 0.391501 | 7_2:-60992321 | Msa1066870:three_prime_UTR |
| CTTTCCAAGCTTGTGTAAGA+TGG | 0.401441 | 7_2:+60994176 | None:intergenic |
| CCTCATCAAATAACTGGAAA+TGG | 0.407277 | 7_2:-60993208 | Msa1066870:CDS |
| GGCATTTATGGCTGCCATGA+AGG | 0.421016 | 7_2:-60994222 | Msa1066870:CDS |
| ATCACAAAACCCTAATGTTA+AGG | 0.422500 | 7_2:-60993479 | Msa1066870:intron |
| ACATCCATGTCCAGTATGTC+TGG | 0.425686 | 7_2:+60993172 | None:intergenic |
| CTTACACAAGCTTGGAAAGA+AGG | 0.427704 | 7_2:-60994172 | Msa1066870:CDS |
| GGAGGCACGGTTTCCGGGGT+TGG | 0.433673 | 7_2:-60993514 | Msa1066870:CDS |
| ATCAACCTCCTCATCATCAT+TGG | 0.433901 | 7_2:+60995525 | None:intergenic |
| TGTTAACCTTACCTTAGTAT+TGG | 0.438994 | 7_2:+60994013 | None:intergenic |
| CAGACCGGCACTTGCTATGA+TGG | 0.446594 | 7_2:-60994421 | Msa1066870:CDS |
| AGGCAACATGGGAATCAGTT+TGG | 0.448530 | 7_2:-60994243 | Msa1066870:CDS |
| AGACATTAATCGACCGAGAC+TGG | 0.451069 | 7_2:+60992510 | None:intergenic |
| TACCTTAGTATTGGCTGGGT+TGG | 0.454890 | 7_2:+60994022 | None:intergenic |
| CAAATAACTGGAAATGGTGT+TGG | 0.466995 | 7_2:-60993202 | Msa1066870:CDS |
| TGGATTCAAACCAGACATAC+TGG | 0.467063 | 7_2:-60993182 | Msa1066870:CDS |
| ACCTTACCTTAGTATTGGCT+GGG | 0.467817 | 7_2:+60994018 | None:intergenic |
| CCGTCTTGTTCCAAGACCTT+CGG | 0.470134 | 7_2:-60992554 | Msa1066870:CDS |
| TTCCAACCCAGCCAATACTA+AGG | 0.471629 | 7_2:-60994024 | Msa1066870:intron |
| ATTCCCATGTTGCCTGATGT+TGG | 0.472301 | 7_2:+60994251 | None:intergenic |
| CACAGTTGCAGCACTCAGAT+TGG | 0.473290 | 7_2:-60992808 | Msa1066870:CDS |
| TTGGTACCAGGAAGATCTTT+AGG | 0.474343 | 7_2:+60995444 | None:intergenic |
| CATACTGGACATGGATGTAA+TGG | 0.480916 | 7_2:-60993167 | Msa1066870:CDS |
| AACAACAGGTCCTGAGATAT+GGG | 0.481398 | 7_2:-60993584 | Msa1066870:CDS |
| GATTTGCCTAAAGATCTTCC+TGG | 0.483439 | 7_2:-60995450 | Msa1066870:CDS |
| AGCTTTCTTATGGAGTTACA+TGG | 0.489206 | 7_2:-60992462 | Msa1066870:three_prime_UTR |
| GATATTACAGTCTATATAAG+TGG | 0.493514 | 7_2:-60995685 | Msa1066870:five_prime_UTR |
| CACTGATCCAACCAAAGGAA+TGG | 0.496426 | 7_2:-60994114 | Msa1066870:CDS |
| AGGTATCGTTCCCCGAAACT+TGG | 0.499828 | 7_2:+60992582 | None:intergenic |
| CTCGATTCTTGCATTGCAAG+TGG | 0.500392 | 7_2:-60995732 | Msa1066870:five_prime_UTR |
| GACAATGCATGCCACTTGGA+TGG | 0.504836 | 7_2:+60992162 | None:intergenic |
| TTTGTATCCTCCCATATCTC+AGG | 0.504891 | 7_2:+60993574 | None:intergenic |
| TCCTCATCATCATTGGATGC+TGG | 0.506377 | 7_2:+60995532 | None:intergenic |
| GCATTTATGGCTGCCATGAA+GGG | 0.510121 | 7_2:-60994221 | Msa1066870:CDS |
| AGTTAACATGGCTAGGACAT+TGG | 0.511456 | 7_2:-60993015 | Msa1066870:CDS |
| GTTTGCCTTTGTTCTCAGGT+AGG | 0.513242 | 7_2:+60992781 | None:intergenic |
| TGGAGTTACATGGATCAACT+TGG | 0.515646 | 7_2:-60992452 | Msa1066870:three_prime_UTR |
| ACTGATCCAACCAAAGGAAT+GGG | 0.516662 | 7_2:-60994113 | Msa1066870:CDS |
| TATGCCATCTTACACAAGCT+TGG | 0.524193 | 7_2:-60994180 | Msa1066870:CDS |
| TTACACAAGCTTGGAAAGAA+GGG | 0.524356 | 7_2:-60994171 | Msa1066870:CDS |
| GAGATATGGGAGGATACAAA+TGG | 0.524396 | 7_2:-60993571 | Msa1066870:CDS |
| CATTTGGTGTGGATTCCAAA+AGG | 0.529158 | 7_2:+60994066 | None:intergenic |
| ATTCTGATAGAGCCAACATC+AGG | 0.532002 | 7_2:-60994263 | Msa1066870:CDS |
| CTTGCATTGCAAGTGGGAGG+AGG | 0.533423 | 7_2:-60995725 | Msa1066870:five_prime_UTR |
| TCTAGTTGTATGAGAACTCA+TGG | 0.537800 | 7_2:+60992486 | None:intergenic |
| ATTCGACAATGCATGCCACT+TGG | 0.540998 | 7_2:+60992158 | None:intergenic |
| CAGTGAAGATGCAGTTAACA+TGG | 0.541587 | 7_2:-60993027 | Msa1066870:CDS |
| AGGACATTGGCCTTGAAAGA+AGG | 0.544017 | 7_2:-60993002 | Msa1066870:CDS |
| GTGCTGAATGGTGGTAAACC+TGG | 0.548416 | 7_2:-60993330 | Msa1066870:intron |
| ACAATGCATGCCACTTGGAT+GGG | 0.556112 | 7_2:+60992163 | None:intergenic |
| TATCTTAACAAAGTAACTGA+AGG | 0.556227 | 7_2:-60994866 | Msa1066870:CDS |
| TGCCATGAAGGGATATAAGA+TGG | 0.557496 | 7_2:-60994210 | Msa1066870:CDS |
| TTCAGCACATTACTTTCAGA+TGG | 0.557589 | 7_2:+60993345 | None:intergenic |
| CAGGTGCATTTCGAAACAAC+AGG | 0.558100 | 7_2:-60993598 | Msa1066870:CDS |
| TGAAAACATGCAGCCAGTCT+CGG | 0.562721 | 7_2:-60992523 | Msa1066870:CDS |
| AGAGCCAACATCAGGCAACA+TGG | 0.563901 | 7_2:-60994255 | Msa1066870:CDS |
| CTACTGCTAGCATCAAAGAC+AGG | 0.569459 | 7_2:-60994802 | Msa1066870:intron |
| GAACAAAGGCAAACTGATTG+TGG | 0.571821 | 7_2:-60992772 | Msa1066870:intron |
| TCGATTCTTGCATTGCAAGT+GGG | 0.575714 | 7_2:-60995731 | Msa1066870:five_prime_UTR |
| GAATTTGATAACTCCTGGAA+AGG | 0.576005 | 7_2:-60994382 | Msa1066870:intron |
| CTTGGAACAAGACGGATGAC+AGG | 0.576272 | 7_2:+60992562 | None:intergenic |
| ATATTACAGTCTATATAAGT+GGG | 0.576662 | 7_2:-60995684 | Msa1066870:five_prime_UTR |
| CAGCATAAAAGCATTTGGTG+TGG | 0.576924 | 7_2:+60994055 | None:intergenic |
| GGCCTTGAAAGAAGGACTCA+TGG | 0.577659 | 7_2:-60992994 | Msa1066870:intron |
| CAAACCAGACATACTGGACA+TGG | 0.579358 | 7_2:-60993176 | Msa1066870:CDS |
| ACAAGTTGACATATTTGTGA+TGG | 0.584399 | 7_2:-60993548 | Msa1066870:CDS |
| CCATTTCCAGTTATTTGATG+AGG | 0.589789 | 7_2:+60993208 | None:intergenic |
| CAAGTTGACATATTTGTGAT+GGG | 0.592268 | 7_2:-60993547 | Msa1066870:CDS |
| GGGAATAGGTAGCGGAGGCA+CGG | 0.600122 | 7_2:-60993527 | Msa1066870:CDS |
| AACAAAGTAACTGAAGGATG+TGG | 0.601957 | 7_2:-60994860 | Msa1066870:CDS |
| TCTTCCATCATAGCAAGTGC+CGG | 0.604090 | 7_2:+60994417 | None:intergenic |
| GCCAGCATCCAATGATGATG+AGG | 0.606622 | 7_2:-60995533 | Msa1066870:CDS |
| CTGTCTTTGATGCTAGCAGT+AGG | 0.608366 | 7_2:+60994803 | None:intergenic |
| ATGAAGAAGAGGTTCTCTTG+AGG | 0.609055 | 7_2:+60995577 | None:intergenic |
| ATCATATTAGATATATGGAG+TGG | 0.610130 | 7_2:-60993370 | Msa1066870:intron |
| AAGATGCAGTTAACATGGCT+AGG | 0.610341 | 7_2:-60993022 | Msa1066870:CDS |
| GAGCCAACATCAGGCAACAT+GGG | 0.610601 | 7_2:-60994254 | Msa1066870:CDS |
| CCGAAGGTCTTGGAACAAGA+CGG | 0.613637 | 7_2:+60992554 | None:intergenic |
| TCTGAAAGTAATGTGCTGAA+TGG | 0.619543 | 7_2:-60993342 | Msa1066870:CDS |
| TTTGTGATGGGAATAGGTAG+CGG | 0.619890 | 7_2:-60993535 | Msa1066870:CDS |
| AAAAGATGAAGAATCAACAC+TGG | 0.622283 | 7_2:+60995488 | None:intergenic |
| ATTCTTGCATTGCAAGTGGG+AGG | 0.626591 | 7_2:-60995728 | Msa1066870:five_prime_UTR |
| ATTCTCACTGATCCAACCAA+AGG | 0.629727 | 7_2:-60994119 | Msa1066870:CDS |
| TAATGATGATGATGAAGAAG+AGG | 0.636238 | 7_2:+60995566 | None:intergenic |
| TTTAAGATATTGTCCAACCC+CGG | 0.638530 | 7_2:+60993501 | None:intergenic |
| GCAAGAATCGAGAAATTAGG+TGG | 0.649332 | 7_2:+60995743 | None:intergenic |
| GACTGTTCATCCAAGTTTCG+GGG | 0.652256 | 7_2:-60992592 | Msa1066870:CDS |
| AGCATCCAATGATGATGAGG+AGG | 0.662832 | 7_2:-60995530 | Msa1066870:CDS |
| GATCCAACCAAAGGAATGGG+AGG | 0.667757 | 7_2:-60994110 | Msa1066870:CDS |
| GAAAGTAATGTGCTGAATGG+TGG | 0.674745 | 7_2:-60993339 | Msa1066870:CDS |
| GTGATGGGAATAGGTAGCGG+AGG | 0.681582 | 7_2:-60993532 | Msa1066870:CDS |
| ACTTTGTTAAGATAAACAAG+TGG | 0.682462 | 7_2:+60994875 | None:intergenic |
| GCTAACCTACCTGAGAACAA+AGG | 0.685849 | 7_2:-60992786 | Msa1066870:CDS |
| TTAAAGCAGACCCATCCAAG+TGG | 0.693145 | 7_2:-60992173 | Msa1066870:three_prime_UTR |
| AACAGGTCCTGAGATATGGG+AGG | 0.695778 | 7_2:-60993581 | Msa1066870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATTCTTGAATTTT+GGG | + | chr7_2:60992693-60992712 | None:intergenic | 10.0% |
| !!! | AAAAAAAAATTCTTGAATTT+TGG | + | chr7_2:60992694-60992713 | None:intergenic | 10.0% |
| !!! | TTAAATTTTAGAACATATTT+TGG | + | chr7_2:60995662-60995681 | None:intergenic | 10.0% |
| !! | TATGATTGAAAAAATTTCAA+AGG | + | chr7_2:60994542-60994561 | None:intergenic | 15.0% |
| !! | TTTCAATCATATTAGATATA+TGG | - | chr7_2:60994551-60994570 | Msa1066870:intron | 15.0% |
| !! | ATATTACAGTCTATATAAGT+GGG | - | chr7_2:60992242-60992261 | Msa1066870:three_prime_UTR | 20.0% |
| !! | AATCATTAGATGTATACAAA+AGG | - | chr7_2:60992792-60992811 | Msa1066870:CDS | 20.0% |
| !! | CATTGAATAAGAGAAAAAAT+TGG | + | chr7_2:60992985-60993004 | None:intergenic | 20.0% |
| !!! | CAATTTATTTTTCAGCTTAT+TGG | - | chr7_2:60993021-60993040 | Msa1066870:CDS | 20.0% |
| !!! | AAAGGAATTTGAAATATAGA+GGG | + | chr7_2:60993160-60993179 | None:intergenic | 20.0% |
| !!! | AAAAGGAATTTGAAATATAG+AGG | + | chr7_2:60993161-60993180 | None:intergenic | 20.0% |
| !! | ATACATAACTTACGTTAAAA+TGG | - | chr7_2:60994300-60994319 | Msa1066870:intron | 20.0% |
| !! | TACATAACTTACGTTAAAAT+GGG | - | chr7_2:60994301-60994320 | Msa1066870:intron | 20.0% |
| !! | GTAATATGAATTGTAATCTT+AGG | + | chr7_2:60994482-60994501 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCGAATTTTTCT+AGG | - | chr7_2:60995073-60995092 | Msa1066870:intron | 20.0% |
| !!! | TTGACTGACAATTTTTTATA+TGG | + | chr7_2:60995546-60995565 | None:intergenic | 20.0% |
| ! | GATATTACAGTCTATATAAG+TGG | - | chr7_2:60992241-60992260 | Msa1066870:three_prime_UTR | 25.0% |
| !!! | TGAAACATGTTTTTTGATGT+TGG | + | chr7_2:60992504-60992523 | None:intergenic | 25.0% |
| ! | ATAGTACTTTGTTCCTTAAT+TGG | - | chr7_2:60992564-60992583 | Msa1066870:CDS | 25.0% |
| !! | AGTTGGATAGAGAAATATTT+TGG | + | chr7_2:60992664-60992683 | None:intergenic | 25.0% |
| !!! | TCAGTTCACTTTTTATCAAA+AGG | - | chr7_2:60992864-60992883 | Msa1066870:intron | 25.0% |
| ! | AATGTTTGTTCTTCAAACTT+TGG | + | chr7_2:60992892-60992911 | None:intergenic | 25.0% |
| !!! | TTATTTTTCAGCTTATTGGT+AGG | - | chr7_2:60993025-60993044 | Msa1066870:CDS | 25.0% |
| ! | ACTTTGTTAAGATAAACAAG+TGG | + | chr7_2:60993054-60993073 | None:intergenic | 25.0% |
| ! | TATCTTAACAAAGTAACTGA+AGG | - | chr7_2:60993060-60993079 | Msa1066870:intron | 25.0% |
| !! | AAGGAATTTGAAATATAGAG+GGG | + | chr7_2:60993159-60993178 | None:intergenic | 25.0% |
| ! | AAATTCGGTCAAATTTAAAG+CGG | + | chr7_2:60993191-60993210 | None:intergenic | 25.0% |
| !! | TTTACTTGATTGGTCAAATT+CGG | + | chr7_2:60993206-60993225 | None:intergenic | 25.0% |
| ! | ATTCATGTGATTTACTTGAT+TGG | + | chr7_2:60993216-60993235 | None:intergenic | 25.0% |
| ! | AATAATCGATGCAATTTGAA+AGG | - | chr7_2:60993385-60993404 | Msa1066870:intron | 25.0% |
| ! | TACAAGAAAAAATCTCAAGA+AGG | - | chr7_2:60993420-60993439 | Msa1066870:intron | 25.0% |
| !! | AAAAAGAATTTGATAACTCC+TGG | - | chr7_2:60993539-60993558 | Msa1066870:CDS | 25.0% |
| ! | TTCATGTTTGTGTTAATTGA+TGG | - | chr7_2:60993632-60993651 | Msa1066870:intron | 25.0% |
| ! | TACTATTTATGTTCGAAACA+GGG | - | chr7_2:60993949-60993968 | Msa1066870:intron | 25.0% |
| ! | AGAAAATCACCTTAACATTA+GGG | + | chr7_2:60994459-60994478 | None:intergenic | 25.0% |
| ! | ATCATATTAGATATATGGAG+TGG | - | chr7_2:60994556-60994575 | Msa1066870:intron | 25.0% |
| ! | ATATACATGTACTTACTTCT+AGG | + | chr7_2:60994792-60994811 | None:intergenic | 25.0% |
| ! | CAATATTAAGGTGAAATTCA+TGG | + | chr7_2:60995021-60995040 | None:intergenic | 25.0% |
| ! | TCACTTGCAATTCAATATTA+AGG | + | chr7_2:60995033-60995052 | None:intergenic | 25.0% |
| ! | TTACATCATACTCACAATTT+CGG | + | chr7_2:60995688-60995707 | None:intergenic | 25.0% |
| !! | ATGTAAATTGTGTCTTCTTT+TGG | - | chr7_2:60995702-60995721 | Msa1066870:five_prime_UTR | 25.0% |
| AATGCAAGAATCGAGAAATT+AGG | + | chr7_2:60992189-60992208 | None:intergenic | 30.0% | |
| TTCTTCTTCTTCTTCTTCAA+TGG | - | chr7_2:60992310-60992329 | Msa1066870:three_prime_UTR | 30.0% | |
| ! | TAATGATGATGATGAAGAAG+AGG | + | chr7_2:60992363-60992382 | None:intergenic | 30.0% |
| AAAAGATGAAGAATCAACAC+TGG | + | chr7_2:60992441-60992460 | None:intergenic | 30.0% | |
| CATCAAAAAACATGTTTCAC+AGG | - | chr7_2:60992505-60992524 | Msa1066870:exon | 30.0% | |
| !! | TGAATTTTGGGTAATGAAGT+TGG | + | chr7_2:60992681-60992700 | None:intergenic | 30.0% |
| ! | AGGAATTTGAAATATAGAGG+GGG | + | chr7_2:60993158-60993177 | None:intergenic | 30.0% |
| ! | TTTAAAGCGGTATCTACAAA+AGG | + | chr7_2:60993178-60993197 | None:intergenic | 30.0% |
| ATGTAAACAACGAGCAAAAT+TGG | + | chr7_2:60993597-60993616 | None:intergenic | 30.0% | |
| TGTTAACCTTACCTTAGTAT+TGG | + | chr7_2:60993916-60993935 | None:intergenic | 30.0% | |
| GTACTATTTATGTTCGAAAC+AGG | - | chr7_2:60993948-60993967 | Msa1066870:intron | 30.0% | |
| TTGTTAGATAGTAGCTATGA+CGG | - | chr7_2:60993972-60993991 | Msa1066870:intron | 30.0% | |
| GGATCGTAAAAAATAGTAGT+TGG | + | chr7_2:60994202-60994221 | None:intergenic | 30.0% | |
| TTACGTTAAAATGGGAAAAC+AGG | - | chr7_2:60994309-60994328 | Msa1066870:intron | 30.0% | |
| ! | ACAAGTTGACATATTTGTGA+TGG | - | chr7_2:60994378-60994397 | Msa1066870:intron | 30.0% |
| ! | CAAGTTGACATATTTGTGAT+GGG | - | chr7_2:60994379-60994398 | Msa1066870:intron | 30.0% |
| ATCACAAAACCCTAATGTTA+AGG | - | chr7_2:60994447-60994466 | Msa1066870:intron | 30.0% | |
| GAGAAAATCACCTTAACATT+AGG | + | chr7_2:60994460-60994479 | None:intergenic | 30.0% | |
| TACAACACAACATAAGTTTG+TGG | + | chr7_2:60994873-60994892 | None:intergenic | 30.0% | |
| ACAAACTTATGTTGTGTTGT+AGG | - | chr7_2:60994872-60994891 | Msa1066870:CDS | 30.0% | |
| ! | TTCTTCGAATTTTTCTAGGT+TGG | - | chr7_2:60995077-60995096 | Msa1066870:intron | 30.0% |
| ACAACTAGAAAGCTTTCTTA+TGG | - | chr7_2:60995454-60995473 | Msa1066870:CDS | 30.0% | |
| ATGCTTTGTAATGTTCTGTT+TGG | - | chr7_2:60995605-60995624 | Msa1066870:exon | 30.0% | |
| ! | TTAGGTGGTGATCCTATTTT+TGG | + | chr7_2:60992171-60992190 | None:intergenic | 35.0% |
| GAAGAAGAAGAAGGAGAATT+TGG | + | chr7_2:60992299-60992318 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | chr7_2:60992308-60992327 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGATGTTGGTACC+AGG | + | chr7_2:60992497-60992516 | None:intergenic | 35.0% |
| ! | ATGCTGTAACTGTTTTGCAT+TGG | - | chr7_2:60992595-60992614 | Msa1066870:intron | 35.0% |
| !!! | AAATATTTTGGCCATACACG+TGG | + | chr7_2:60992652-60992671 | None:intergenic | 35.0% |
| CAGCAGAACATCAACAAAAT+TGG | + | chr7_2:60992753-60992772 | None:intergenic | 35.0% | |
| AACAAAGTAACTGAAGGATG+TGG | - | chr7_2:60993066-60993085 | Msa1066870:intron | 35.0% | |
| ! | TTTGAAATATAGAGGGGGTA+AGG | + | chr7_2:60993153-60993172 | None:intergenic | 35.0% |
| ATCGATGCAATTTGAAAGGT+CGG | - | chr7_2:60993389-60993408 | Msa1066870:intron | 35.0% | |
| !! | TCAAGAAGGTCGTGTTTTTA+GGG | - | chr7_2:60993434-60993453 | Msa1066870:intron | 35.0% |
| TTTCTTGAATTTCGACAGAC+CGG | - | chr7_2:60993490-60993509 | Msa1066870:CDS | 35.0% | |
| ! | GAATTTGATAACTCCTGGAA+AGG | - | chr7_2:60993544-60993563 | Msa1066870:CDS | 35.0% |
| TAAACAACGAGCAAAATTGG+TGG | + | chr7_2:60993594-60993613 | None:intergenic | 35.0% | |
| AACCATCTTATATCCCTTCA+TGG | + | chr7_2:60993721-60993740 | None:intergenic | 35.0% | |
| TTACACAAGCTTGGAAAGAA+GGG | - | chr7_2:60993755-60993774 | Msa1066870:intron | 35.0% | |
| ! | GAAAAAGGCTTATGACCTTT+TGG | - | chr7_2:60993845-60993864 | Msa1066870:intron | 35.0% |
| !! | TGTTGCAGCATAAAAGCATT+TGG | + | chr7_2:60993879-60993898 | None:intergenic | 35.0% |
| !!! | CTACTATTTTTTACGATCCG+TGG | - | chr7_2:60994203-60994222 | Msa1066870:CDS | 35.0% |
| ! | AAACCAGTGTTTGTTAACCA+CGG | + | chr7_2:60994223-60994242 | None:intergenic | 35.0% |
| ! | GACATATTTGTGATGGGAAT+AGG | - | chr7_2:60994385-60994404 | Msa1066870:CDS | 35.0% |
| ! | TTTAAGATATTGTCCAACCC+CGG | + | chr7_2:60994428-60994447 | None:intergenic | 35.0% |
| TTCAGCACATTACTTTCAGA+TGG | + | chr7_2:60994584-60994603 | None:intergenic | 35.0% | |
| TCTGAAAGTAATGTGCTGAA+TGG | - | chr7_2:60994584-60994603 | Msa1066870:intron | 35.0% | |
| GAAACAAAAAGATGCTTACC+AGG | + | chr7_2:60994617-60994636 | None:intergenic | 35.0% | |
| ATTTGATGAGGACCTGTATA+TGG | + | chr7_2:60994709-60994728 | None:intergenic | 35.0% | |
| CCATTTCCAGTTATTTGATG+AGG | + | chr7_2:60994721-60994740 | None:intergenic | 35.0% | |
| CCTCATCAAATAACTGGAAA+TGG | - | chr7_2:60994718-60994737 | Msa1066870:intron | 35.0% | |
| CAAATAACTGGAAATGGTGT+TGG | - | chr7_2:60994724-60994743 | Msa1066870:intron | 35.0% | |
| AACATAAGTTTGTGGCAGTT+AGG | + | chr7_2:60994865-60994884 | None:intergenic | 35.0% | |
| TCTAGTTGTATGAGAACTCA+TGG | + | chr7_2:60995443-60995462 | None:intergenic | 35.0% | |
| AGCTTTCTTATGGAGTTACA+TGG | - | chr7_2:60995464-60995483 | Msa1066870:CDS | 35.0% | |
| GCAAGAATCGAGAAATTAGG+TGG | + | chr7_2:60992186-60992205 | None:intergenic | 40.0% | |
| TCGATTCTTGCATTGCAAGT+GGG | - | chr7_2:60992195-60992214 | Msa1066870:three_prime_UTR | 40.0% | |
| ATGAAGAAGAGGTTCTCTTG+AGG | + | chr7_2:60992352-60992371 | None:intergenic | 40.0% | |
| ATCAACCTCCTCATCATCAT+TGG | + | chr7_2:60992404-60992423 | None:intergenic | 40.0% | |
| GATTTGCCTAAAGATCTTCC+TGG | - | chr7_2:60992476-60992495 | Msa1066870:three_prime_UTR | 40.0% | |
| TTGGTACCAGGAAGATCTTT+AGG | + | chr7_2:60992485-60992504 | None:intergenic | 40.0% | |
| AGCATCACAGTCACCAATTA+AGG | + | chr7_2:60992580-60992599 | None:intergenic | 40.0% | |
| ! | CTCAAGAAGGTCGTGTTTTT+AGG | - | chr7_2:60993433-60993452 | Msa1066870:intron | 40.0% |
| TCGATTCAACTAACCTTTCC+AGG | + | chr7_2:60993560-60993579 | None:intergenic | 40.0% | |
| ATTCTGATAGAGCCAACATC+AGG | - | chr7_2:60993663-60993682 | Msa1066870:intron | 40.0% | |
| GGGAATCAGTTTGGCATTTA+TGG | - | chr7_2:60993692-60993711 | Msa1066870:intron | 40.0% | |
| TGCCATGAAGGGATATAAGA+TGG | - | chr7_2:60993716-60993735 | Msa1066870:intron | 40.0% | |
| TATGCCATCTTACACAAGCT+TGG | - | chr7_2:60993746-60993765 | Msa1066870:intron | 40.0% | |
| CTTTCCAAGCTTGTGTAAGA+TGG | + | chr7_2:60993753-60993772 | None:intergenic | 40.0% | |
| CTTACACAAGCTTGGAAAGA+AGG | - | chr7_2:60993754-60993773 | Msa1066870:intron | 40.0% | |
| !! | AGGGTTTGTATGAGAGCATT+TGG | - | chr7_2:60993774-60993793 | Msa1066870:intron | 40.0% |
| ATTCTCACTGATCCAACCAA+AGG | - | chr7_2:60993807-60993826 | Msa1066870:intron | 40.0% | |
| ACTGATCCAACCAAAGGAAT+GGG | - | chr7_2:60993813-60993832 | Msa1066870:intron | 40.0% | |
| AATGGGAGGAACAGTGAAAA+AGG | - | chr7_2:60993830-60993849 | Msa1066870:intron | 40.0% | |
| !! | CATTTGGTGTGGATTCCAAA+AGG | + | chr7_2:60993863-60993882 | None:intergenic | 40.0% |
| !! | CAGCATAAAAGCATTTGGTG+TGG | + | chr7_2:60993874-60993893 | None:intergenic | 40.0% |
| !! | ACCTTACCTTAGTATTGGCT+GGG | + | chr7_2:60993911-60993930 | None:intergenic | 40.0% |
| !! | AACCTTACCTTAGTATTGGC+TGG | + | chr7_2:60993912-60993931 | None:intergenic | 40.0% |
| CCATCAAATAGTGACTAGAG+CGG | - | chr7_2:60994144-60994163 | Msa1066870:CDS | 40.0% | |
| AAACAACAGGTCCTGAGATA+TGG | - | chr7_2:60994341-60994360 | Msa1066870:intron | 40.0% | |
| AACAACAGGTCCTGAGATAT+GGG | - | chr7_2:60994342-60994361 | Msa1066870:intron | 40.0% | |
| TTTGTATCCTCCCATATCTC+AGG | + | chr7_2:60994355-60994374 | None:intergenic | 40.0% | |
| GAGATATGGGAGGATACAAA+TGG | - | chr7_2:60994355-60994374 | Msa1066870:intron | 40.0% | |
| ! | TTTGTGATGGGAATAGGTAG+CGG | - | chr7_2:60994391-60994410 | Msa1066870:CDS | 40.0% |
| GAAAGTAATGTGCTGAATGG+TGG | - | chr7_2:60994587-60994606 | Msa1066870:intron | 40.0% | |
| CAAGTCTCTTACTGCGAAAT+CGG | - | chr7_2:60994676-60994695 | Msa1066870:intron | 40.0% | |
| ACAGGTCCTCATCAAATAAC+TGG | - | chr7_2:60994712-60994731 | Msa1066870:intron | 40.0% | |
| TGGATTCAAACCAGACATAC+TGG | - | chr7_2:60994744-60994763 | Msa1066870:intron | 40.0% | |
| CATACTGGACATGGATGTAA+TGG | - | chr7_2:60994759-60994778 | Msa1066870:intron | 40.0% | |
| CAGTGAAGATGCAGTTAACA+TGG | - | chr7_2:60994899-60994918 | Msa1066870:intron | 40.0% | |
| AAGATGCAGTTAACATGGCT+AGG | - | chr7_2:60994904-60994923 | Msa1066870:intron | 40.0% | |
| AGTTAACATGGCTAGGACAT+TGG | - | chr7_2:60994911-60994930 | Msa1066870:intron | 40.0% | |
| TACCATGAGTCCTTCTTTCA+AGG | + | chr7_2:60994937-60994956 | None:intergenic | 40.0% | |
| !! | TTCTAGGTTGGTATATCGTC+TGG | - | chr7_2:60995089-60995108 | Msa1066870:intron | 40.0% |
| ATCAGTTTGCCTTTGTTCTC+AGG | + | chr7_2:60995152-60995171 | None:intergenic | 40.0% | |
| GAACAAAGGCAAACTGATTG+TGG | - | chr7_2:60995154-60995173 | Msa1066870:intron | 40.0% | |
| ! | ATGCTTCGCACTGTGATTTT+AGG | - | chr7_2:60995264-60995283 | Msa1066870:intron | 40.0% |
| CAGACTGTTCATCCAAGTTT+CGG | - | chr7_2:60995332-60995351 | Msa1066870:intron | 40.0% | |
| AGACTGTTCATCCAAGTTTC+GGG | - | chr7_2:60995333-60995352 | Msa1066870:intron | 40.0% | |
| TGGAGTTACATGGATCAACT+TGG | - | chr7_2:60995474-60995493 | Msa1066870:CDS | 40.0% | |
| ! | TTGTGTCTTCTTTTGGCACA+TGG | - | chr7_2:60995709-60995728 | Msa1066870:five_prime_UTR | 40.0% |
| CTCGATTCTTGCATTGCAAG+TGG | - | chr7_2:60992194-60992213 | Msa1066870:three_prime_UTR | 45.0% | |
| ATTCTTGCATTGCAAGTGGG+AGG | - | chr7_2:60992198-60992217 | Msa1066870:three_prime_UTR | 45.0% | |
| TCCTCATCATCATTGGATGC+TGG | + | chr7_2:60992397-60992416 | None:intergenic | 45.0% | |
| ! | AGCATCCAATGATGATGAGG+AGG | - | chr7_2:60992396-60992415 | Msa1066870:three_prime_UTR | 45.0% |
| CTCATATCATGCCACGTGTA+TGG | - | chr7_2:60992638-60992657 | Msa1066870:intron | 45.0% | |
| CTGTCTTTGATGCTAGCAGT+AGG | + | chr7_2:60993126-60993145 | None:intergenic | 45.0% | |
| CTACTGCTAGCATCAAAGAC+AGG | - | chr7_2:60993124-60993143 | Msa1066870:intron | 45.0% | |
| TCTTCCATCATAGCAAGTGC+CGG | + | chr7_2:60993512-60993531 | None:intergenic | 45.0% | |
| ! | AACGAGCAAAATTGGTGGCA+TGG | + | chr7_2:60993589-60993608 | None:intergenic | 45.0% |
| ATTCCCATGTTGCCTGATGT+TGG | + | chr7_2:60993678-60993697 | None:intergenic | 45.0% | |
| AGGCAACATGGGAATCAGTT+TGG | - | chr7_2:60993683-60993702 | Msa1066870:intron | 45.0% | |
| GCATTTATGGCTGCCATGAA+GGG | - | chr7_2:60993705-60993724 | Msa1066870:intron | 45.0% | |
| CACTGATCCAACCAAAGGAA+TGG | - | chr7_2:60993812-60993831 | Msa1066870:intron | 45.0% | |
| TTCCAACCCAGCCAATACTA+AGG | - | chr7_2:60993902-60993921 | Msa1066870:intron | 45.0% | |
| !! | TACCTTAGTATTGGCTGGGT+TGG | + | chr7_2:60993907-60993926 | None:intergenic | 45.0% |
| ACCCAGCCAATACTAAGGTA+AGG | - | chr7_2:60993907-60993926 | Msa1066870:intron | 45.0% | |
| CCGCTCTAGTCACTATTTGA+TGG | + | chr7_2:60994147-60994166 | None:intergenic | 45.0% | |
| GATCCGTGGTTAACAAACAC+TGG | - | chr7_2:60994217-60994236 | Msa1066870:CDS | 45.0% | |
| CAGGTGCATTTCGAAACAAC+AGG | - | chr7_2:60994328-60994347 | Msa1066870:intron | 45.0% | |
| ATCGGATGTCGTCCATATAC+AGG | - | chr7_2:60994694-60994713 | Msa1066870:intron | 45.0% | |
| CAAACCAGACATACTGGACA+TGG | - | chr7_2:60994750-60994769 | Msa1066870:intron | 45.0% | |
| ACATCCATGTCCAGTATGTC+TGG | + | chr7_2:60994757-60994776 | None:intergenic | 45.0% | |
| TGGCAGTTAGGATAAACGCA+AGG | + | chr7_2:60994853-60994872 | None:intergenic | 45.0% | |
| !! | AGGACATTGGCCTTGAAAGA+AGG | - | chr7_2:60994924-60994943 | Msa1066870:intron | 45.0% |
| GCTAACCTACCTGAGAACAA+AGG | - | chr7_2:60995140-60995159 | Msa1066870:intron | 45.0% | |
| GTTTGCCTTTGTTCTCAGGT+AGG | + | chr7_2:60995148-60995167 | None:intergenic | 45.0% | |
| GACTGTTCATCCAAGTTTCG+GGG | - | chr7_2:60995334-60995353 | Msa1066870:intron | 45.0% | |
| ! | TGTTTTCAGCTTCTGTCCGA+AGG | + | chr7_2:60995391-60995410 | None:intergenic | 45.0% |
| TGAAAACATGCAGCCAGTCT+CGG | - | chr7_2:60995403-60995422 | Msa1066870:intron | 45.0% | |
| AGACATTAATCGACCGAGAC+TGG | + | chr7_2:60995419-60995438 | None:intergenic | 45.0% | |
| TTAAAGCAGACCCATCCAAG+TGG | - | chr7_2:60995753-60995772 | Msa1066870:five_prime_UTR | 45.0% | |
| ! | ACAATGCATGCCACTTGGAT+GGG | + | chr7_2:60995766-60995785 | None:intergenic | 45.0% |
| !!! | TTTTTTAAACAATTTTTTAT+TGG | - | chr7_2:60992949-60992968 | Msa1066870:intron | 5.0% |
| ! | GCCAGCATCCAATGATGATG+AGG | - | chr7_2:60992393-60992412 | Msa1066870:three_prime_UTR | 50.0% |
| AGAGCCAACATCAGGCAACA+TGG | - | chr7_2:60993671-60993690 | Msa1066870:intron | 50.0% | |
| GAGCCAACATCAGGCAACAT+GGG | - | chr7_2:60993672-60993691 | Msa1066870:intron | 50.0% | |
| GGCATTTATGGCTGCCATGA+AGG | - | chr7_2:60993704-60993723 | Msa1066870:intron | 50.0% | |
| GATCCAACCAAAGGAATGGG+AGG | - | chr7_2:60993816-60993835 | Msa1066870:intron | 50.0% | |
| GTTCCTCCCATTCCTTTGGT+TGG | + | chr7_2:60993822-60993841 | None:intergenic | 50.0% | |
| CACTGTTCCTCCCATTCCTT+TGG | + | chr7_2:60993826-60993845 | None:intergenic | 50.0% | |
| AACAGGTCCTGAGATATGGG+AGG | - | chr7_2:60994345-60994364 | Msa1066870:intron | 50.0% | |
| GTGCTGAATGGTGGTAAACC+TGG | - | chr7_2:60994596-60994615 | Msa1066870:intron | 50.0% | |
| GGCCTTGAAAGAAGGACTCA+TGG | - | chr7_2:60994932-60994951 | Msa1066870:intron | 50.0% | |
| CACAGTTGCAGCACTCAGAT+TGG | - | chr7_2:60995118-60995137 | Msa1066870:intron | 50.0% | |
| ! | AGGTATCGTTCCCCGAAACT+TGG | + | chr7_2:60995347-60995366 | None:intergenic | 50.0% |
| CTTGGAACAAGACGGATGAC+AGG | + | chr7_2:60995367-60995386 | None:intergenic | 50.0% | |
| CCGAAGGTCTTGGAACAAGA+CGG | + | chr7_2:60995375-60995394 | None:intergenic | 50.0% | |
| ! | CCGTCTTGTTCCAAGACCTT+CGG | - | chr7_2:60995372-60995391 | Msa1066870:intron | 50.0% |
| ! | GACAATGCATGCCACTTGGA+TGG | + | chr7_2:60995767-60995786 | None:intergenic | 50.0% |
| CTTGCATTGCAAGTGGGAGG+AGG | - | chr7_2:60992201-60992220 | Msa1066870:three_prime_UTR | 55.0% | |
| !! | CAGACCGGCACTTGCTATGA+TGG | - | chr7_2:60993505-60993524 | Msa1066870:CDS | 55.0% |
| ! | GTGATGGGAATAGGTAGCGG+AGG | - | chr7_2:60994394-60994413 | Msa1066870:CDS | 55.0% |
| CAGCTTCTGTCCGAAGGTCT+TGG | + | chr7_2:60995385-60995404 | None:intergenic | 55.0% | |
| !! | GGGAATAGGTAGCGGAGGCA+CGG | - | chr7_2:60994399-60994418 | Msa1066870:CDS | 60.0% |
| !! | GGTAGCGGAGGCACGGTTTC+CGG | - | chr7_2:60994406-60994425 | Msa1066870:CDS | 65.0% |
| ! | GTAGCGGAGGCACGGTTTCC+GGG | - | chr7_2:60994407-60994426 | Msa1066870:CDS | 65.0% |
| ! | TAGCGGAGGCACGGTTTCCG+GGG | - | chr7_2:60994408-60994427 | Msa1066870:CDS | 65.0% |
| ! | GGAGGCACGGTTTCCGGGGT+TGG | - | chr7_2:60994412-60994431 | Msa1066870:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 60992161 | 60995787 | 60992161 | ID=Msa1066870;Name=Msa1066870 |
| chr7_2 | mRNA | 60992161 | 60995787 | 60992161 | ID=Msa1066870-mRNA-1;Parent=Msa1066870;Name=Msa1066870-mRNA-1;_AED=0.16;_eAED=0.16;_QI=168|1|1|1|1|1|10|354|379 |
| chr7_2 | exon | 60992161 | 60992613 | 60992161 | ID=Msa1066870-mRNA-1:exon:12213;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60992773 | 60992853 | 60992773 | ID=Msa1066870-mRNA-1:exon:12212;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60992995 | 60993054 | 60992995 | ID=Msa1066870-mRNA-1:exon:12211;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60993153 | 60993232 | 60993153 | ID=Msa1066870-mRNA-1:exon:12210;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60993331 | 60993382 | 60993331 | ID=Msa1066870-mRNA-1:exon:12209;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60993480 | 60993617 | 60993480 | ID=Msa1066870-mRNA-1:exon:12208;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60994025 | 60994288 | 60994025 | ID=Msa1066870-mRNA-1:exon:12207;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60994383 | 60994440 | 60994383 | ID=Msa1066870-mRNA-1:exon:12206;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60994803 | 60994912 | 60994803 | ID=Msa1066870-mRNA-1:exon:12205;Parent=Msa1066870-mRNA-1 |
| chr7_2 | exon | 60995422 | 60995787 | 60995422 | ID=Msa1066870-mRNA-1:exon:12204;Parent=Msa1066870-mRNA-1 |
| chr7_2 | five_prime_UTR | 60995620 | 60995787 | 60995620 | ID=Msa1066870-mRNA-1:five_prime_utr;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60995422 | 60995619 | 60995422 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60994803 | 60994912 | 60994803 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60994383 | 60994440 | 60994383 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60994025 | 60994288 | 60994025 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60993480 | 60993617 | 60993480 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60993331 | 60993382 | 60993331 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60993153 | 60993232 | 60993153 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60992995 | 60993054 | 60992995 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60992773 | 60992853 | 60992773 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | CDS | 60992515 | 60992613 | 60992515 | ID=Msa1066870-mRNA-1:cds;Parent=Msa1066870-mRNA-1 |
| chr7_2 | three_prime_UTR | 60992161 | 60992514 | 60992161 | ID=Msa1066870-mRNA-1:three_prime_utr;Parent=Msa1066870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
