AlfalfaGEDB | Msa1028270

M. sativa cultivar zhongmu-4 / Msa1028270

KEGG: K13034
GO: GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
PFAM: PF00291.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028270	AQZ26214.1	99.211	380	1	2	1	379	1	379	0.0	770

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028270	sp\|Q1KLZ2\|CAS1_MALDO	83.113	379	59	1	1	379	1	374	0.0	630

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028270	A0A1U9XPL9	99.211	380	1	2	1	379	1	379	0.0	770

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004790	Msa1028270	-0.807929	3.975410e-50	-8.615850e-47
Msa0007230	Msa1028270	0.801071	1.070247e-48	-8.615850e-47
Msa0055590	Msa1028270	0.802059	6.714889e-49	-8.615850e-47
Msa0072000	Msa1028270	0.823570	1.289893e-53	-8.615850e-47
Msa0076670	Msa1028270	0.828247	9.998483e-55	-8.615850e-47
Msa0078660	Msa1028270	0.801358	9.348183e-49	-8.615850e-47
Msa0101060	Msa1028270	0.801077	1.067587e-48	-8.615850e-47
Msa0133980	Msa1028270	-0.809056	2.284543e-50	-8.615850e-47
Msa0140910	Msa1028270	0.800603	1.333805e-48	-8.615850e-47
Msa0171300	Msa1028270	0.811245	7.709171e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028270	MtrunA17_Chr7g0248021	98.425	381	3	2	1	379	1	380	0.0	766
Msa1028270	MtrunA17_Chr4g0045721	56.484	347	149	1	29	375	18	362	1.18e-143	412
Msa1028270	MtrunA17_Chr1g0191041	62.658	316	118	0	58	373	6	321	7.38e-137	393
Msa1028270	MtrunA17_Chr5g0394491	61.709	316	121	0	58	373	6	321	1.35e-136	392
Msa1028270	MtrunA17_Chr4g0045781	60.748	321	126	0	55	375	61	381	2.12e-136	394
Msa1028270	MtrunA17_Chr1g0191051	61.146	314	122	0	60	373	7	320	5.03e-135	388
Msa1028270	MtrunA17_Chr1g0205381	61.392	316	122	0	58	373	6	321	4.68e-134	386
Msa1028270	MtrunA17_Chr4g0045771	52.066	363	163	3	13	375	2	353	2.05e-133	385
Msa1028270	MtrunA17_Chr1g0191061	53.090	356	121	2	64	373	25	380	2.05e-121	356
Msa1028270	MtrunA17_Chr7g0254401	49.162	358	169	2	16	373	24	368	2.81e-115	340

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1028270	AT3G61440.1	79.887	353	66	1	27	379	21	368	0.0	573
Msa1028270	AT3G61440.4	78.788	297	58	1	27	323	21	312	4.02e-169	476
Msa1028270	AT3G61440.2	84.191	272	43	0	108	379	1	272	7.00e-166	465
Msa1028270	AT3G61440.3	85.020	247	37	0	133	379	1	247	3.42e-151	427
Msa1028270	AT3G59760.1	60.559	322	127	0	57	378	110	431	1.99e-139	404
Msa1028270	AT3G59760.3	60.815	319	125	0	57	375	110	428	2.00e-139	404
Msa1028270	AT4G14880.5	60.759	316	124	0	58	373	3	318	2.37e-136	392
Msa1028270	AT4G14880.3	60.759	316	124	0	58	373	3	318	2.37e-136	392
Msa1028270	AT4G14880.4	60.759	316	124	0	58	373	3	318	2.37e-136	392
Msa1028270	AT4G14880.2	60.759	316	124	0	58	373	3	318	2.37e-136	392

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Find 120 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGAAGAATCAACAC+TGG	0.622283	7_1:-60966134	None:intergenic
AAAAGGAATTTGATAACTCC+TGG	0.443852	7_1:+60967229	Msa1028270:CDS
AAACAACAGGTCCTGAGATA+TGG	0.318320	7_1:+60967954	Msa1028270:CDS
AACAAAGTAACTGAAGGATG+TGG	0.601957	7_1:+60966762	Msa1028270:CDS
AACAACAGGTCCTGAGATAT+GGG	0.481398	7_1:+60967955	Msa1028270:CDS
AACAGGTCCTGAGATATGGG+AGG	0.695778	7_1:+60967958	Msa1028270:CDS
AACCATCTTATATCCCTTCA+TGG	0.389444	7_1:-60967408	None:intergenic
AACGTTACCTTAGTATTGGC+TGG	0.338770	7_1:-60967599	None:intergenic
AAGATGCAGTTAACATGGCT+AGG	0.610341	7_1:+60968515	Msa1028270:CDS
AATGCAAGAATCGAGAAATT+AGG	0.379372	7_1:-60965882	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCAAGAATCGAGAAATT+AGG	-	chr7_1:60965885-60965904	None:intergenic	30.0%
GATGTTACAGTCTATATAAG+TGG	+	chr7_1:60965937-60965956	Msa1028270:five_prime_UTR	30.0%
TTCTTCTTCTTCTTCTTCAA+TGG	+	chr7_1:60966006-60966025	Msa1028270:exon	30.0%
AAAAGATGAAGAATCAACAC+TGG	-	chr7_1:60966137-60966156	None:intergenic	30.0%
CATCAAAAAACATGTTTCAC+AGG	+	chr7_1:60966201-60966220	Msa1028270:CDS	30.0%
ATGTAAACAACGAGCAAAAT+TGG	-	chr7_1:60967287-60967306	None:intergenic	30.0%
TTCGTGTTTGTGTTAATTGA+TGG	+	chr7_1:60967322-60967341	Msa1028270:intron	30.0%
TGTTAACGTTACCTTAGTAT+TGG	-	chr7_1:60967606-60967625	None:intergenic	30.0%
TACGTATTTATGTTCAAGAC+AGG	+	chr7_1:60967639-60967658	Msa1028270:intron	30.0%
ACGTATTTATGTTCAAGACA+GGG	+	chr7_1:60967640-60967659	Msa1028270:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	60965857	60969403	60965857	ID=Msa1028270;Name=Msa1028270
chr7_1	mRNA	60965857	60969403	60965857	ID=Msa1028270-mRNA-1;Parent=Msa1028270;Name=Msa1028270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=168\|1\|1\|1\|1\|1\|10\|354\|379
chr7_1	exon	60965857	60966222	60965857	ID=Msa1028270-mRNA-1:exon:12760;Parent=Msa1028270-mRNA-1
chr7_1	exon	60966732	60966841	60966732	ID=Msa1028270-mRNA-1:exon:12761;Parent=Msa1028270-mRNA-1
chr7_1	exon	60967198	60967255	60967198	ID=Msa1028270-mRNA-1:exon:12762;Parent=Msa1028270-mRNA-1
chr7_1	exon	60967350	60967613	60967350	ID=Msa1028270-mRNA-1:exon:12763;Parent=Msa1028270-mRNA-1
chr7_1	exon	60967944	60968081	60967944	ID=Msa1028270-mRNA-1:exon:12764;Parent=Msa1028270-mRNA-1
chr7_1	exon	60968179	60968230	60968179	ID=Msa1028270-mRNA-1:exon:12765;Parent=Msa1028270-mRNA-1
chr7_1	exon	60968329	60968408	60968329	ID=Msa1028270-mRNA-1:exon:12766;Parent=Msa1028270-mRNA-1
chr7_1	exon	60968505	60968564	60968505	ID=Msa1028270-mRNA-1:exon:12767;Parent=Msa1028270-mRNA-1
chr7_1	exon	60968711	60968791	60968711	ID=Msa1028270-mRNA-1:exon:12768;Parent=Msa1028270-mRNA-1
chr7_1	exon	60968951	60969403	60968951	ID=Msa1028270-mRNA-1:exon:12769;Parent=Msa1028270-mRNA-1
chr7_1	five_prime_UTR	60965857	60966024	60965857	ID=Msa1028270-mRNA-1:five_prime_utr;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60966025	60966222	60966025	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60966732	60966841	60966732	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60967198	60967255	60967198	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60967350	60967613	60967350	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60967944	60968081	60967944	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60968179	60968230	60968179	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60968329	60968408	60968329	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60968505	60968564	60968505	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60968711	60968791	60968711	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	CDS	60968951	60969049	60968951	ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1
chr7_1	three_prime_UTR	60969050	60969403	60969050	ID=Msa1028270-mRNA-1:three_prime_utr;Parent=Msa1028270-mRNA-1

Gene Sequence

>Msa1028270

ATGGCTTCTCTAATGAGCTTCCTCAAGAGAACCTCTTCATCATCATCATTAGCAGTTGCATGCCAGCATCCAATGATGATGAGGAGATTGATGACAACAACAGCAGCAACCAGTGTTGATTCTTCATCTTTTGCTCAGAGAATCAGAGATTTGCCTAAAGATCTTCCTGGTACCAACATCAAAAAACATGTTTCACAGCTTATTGGTAGGACTCCACTTGTTTATCTTAACAAAGTAACTGAAGGATGTGGTGCTTATATTGCTGTTAAGCAAGAGATGATGCAGCCTACTGCTAGCATCAAAGACAGACCGGCACTTGCTATGATGGAAGATGCTGAGAAAAGGAATTTGATAACTCCTGGAAAGACAATTCTGATAGAGCCAACATCAGGCAACATGGGAATCAGTTTGGCATTTATGGCTGCCATGAAGGGATATAAGATGGTTTTGACTATGCCATCTTACACAAGCTTGGAAAGAAGGGTTTGTATGAGAGCATTTGGAGCTGAATTGATTCTCACGGATCCAACGAAAGGAATGGGAGGAACAGTGAAAAAGGCTTATGACCTTTTGGAATCCACACCAAATGCTTTTATGCTGCAACAATTTTCCAACCCAGCCAATACTAAGGTGCATTTCGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTGATGGGAATAGGTAGCGGAGGCACGGTTTCCGGGGTTGGACAATATCTTAAATCACAAAACCCTAATGTTAAGATATATGGAGTGGAGCCATCTGAAAGTAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCAAATAACTGGAAATGGTGTTGGATTCAAACCAGACATATTGGACATGGATGTAATGGAAAAAGTCCTAGAAGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGACATTGGCCTTGAAAGAAGGACTCATGGTTGGTATATCGTCTGGAGCAAACACAGTTGCAGCACTCAGATTGGCTAACCTTCCTGAGAACAAAGGCAAACTGATTGTGACTGTTCATCCAAGTTTCGGGGAACGATATCTGTCATCCGTCTTGTTCCAAGACCTTCGAACAGAAGCTGAAAACATGCAGCCAGTCTCGGTCGATTAA

Protein sequence

>Msa1028270

MASLMSFLKRTSSSSSLAVACQHPMMMRRLMTTTAATSVDSSSFAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTASIKDRPALAMMEDAEKRNLITPGKTILIEPTSGNMGISLAFMAAMKGYKMVLTMPSYTSLERRVCMRAFGAELILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPSESNVLNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLANLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENMQPVSVD*