Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028270 | AQZ26214.1 | 99.211 | 380 | 1 | 2 | 1 | 379 | 1 | 379 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028270 | sp|Q1KLZ2|CAS1_MALDO | 83.113 | 379 | 59 | 1 | 1 | 379 | 1 | 374 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028270 | A0A1U9XPL9 | 99.211 | 380 | 1 | 2 | 1 | 379 | 1 | 379 | 0.0 | 770 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa1028270 | -0.807929 | 3.975410e-50 | -8.615850e-47 |
| Msa0007230 | Msa1028270 | 0.801071 | 1.070247e-48 | -8.615850e-47 |
| Msa0055590 | Msa1028270 | 0.802059 | 6.714889e-49 | -8.615850e-47 |
| Msa0072000 | Msa1028270 | 0.823570 | 1.289893e-53 | -8.615850e-47 |
| Msa0076670 | Msa1028270 | 0.828247 | 9.998483e-55 | -8.615850e-47 |
| Msa0078660 | Msa1028270 | 0.801358 | 9.348183e-49 | -8.615850e-47 |
| Msa0101060 | Msa1028270 | 0.801077 | 1.067587e-48 | -8.615850e-47 |
| Msa0626280 | Msa1028270 | 0.814778 | 1.295504e-51 | -8.615850e-47 |
| Msa0638280 | Msa1028270 | 0.810798 | 9.635162e-51 | -8.615850e-47 |
| Msa0638320 | Msa1028270 | 0.800786 | 1.223931e-48 | -8.615850e-47 |
| Msa0649800 | Msa1028270 | 0.817769 | 2.777255e-52 | -8.615850e-47 |
| Msa0658570 | Msa1028270 | 0.818322 | 2.082314e-52 | -8.615850e-47 |
| Msa0691860 | Msa1028270 | 0.815312 | 9.859624e-52 | -8.615850e-47 |
| Msa0718470 | Msa1028270 | 0.808178 | 3.519145e-50 | -8.615850e-47 |
| Msa0743680 | Msa1028270 | 0.839070 | 1.973870e-57 | -8.615850e-47 |
| Msa0799060 | Msa1028270 | 0.822231 | 2.645787e-53 | -8.615850e-47 |
| Msa0801100 | Msa1028270 | 0.807121 | 5.900555e-50 | -8.615850e-47 |
| Msa0809740 | Msa1028270 | 0.815991 | 6.962005e-52 | -8.615850e-47 |
| Msa0133980 | Msa1028270 | -0.809056 | 2.284543e-50 | -8.615850e-47 |
| Msa0140910 | Msa1028270 | 0.800603 | 1.333805e-48 | -8.615850e-47 |
| Msa0171300 | Msa1028270 | 0.811245 | 7.709171e-51 | -8.615850e-47 |
| Msa0199820 | Msa1028270 | 0.803467 | 3.437434e-49 | -8.615850e-47 |
| Msa0223290 | Msa1028270 | 0.801619 | 8.266067e-49 | -8.615850e-47 |
| Msa0223380 | Msa1028270 | 0.829215 | 5.830579e-55 | -8.615850e-47 |
| Msa0365490 | Msa1028270 | 0.807602 | 4.665728e-50 | -8.615850e-47 |
| Msa0371180 | Msa1028270 | 0.841971 | 3.437651e-58 | -8.615850e-47 |
| Msa0377530 | Msa1028270 | 0.855673 | 5.389454e-62 | -8.615850e-47 |
| Msa0378380 | Msa1028270 | 0.807097 | 5.970883e-50 | -8.615850e-47 |
| Msa0382870 | Msa1028270 | 0.813449 | 2.545055e-51 | -8.615850e-47 |
| Msa0388030 | Msa1028270 | -0.837880 | 4.002790e-57 | -8.615850e-47 |
| Msa0422500 | Msa1028270 | 0.887509 | 1.340519e-72 | -8.615850e-47 |
| Msa0426810 | Msa1028270 | 0.802785 | 4.756778e-49 | -8.615850e-47 |
| Msa0432930 | Msa1028270 | 0.813964 | 1.960138e-51 | -8.615850e-47 |
| Msa0450350 | Msa1028270 | 0.872698 | 2.604151e-67 | -8.615850e-47 |
| Msa0458440 | Msa1028270 | 0.820811 | 5.630261e-53 | -8.615850e-47 |
| Msa0464900 | Msa1028270 | 0.812024 | 5.221092e-51 | -8.615850e-47 |
| Msa0473240 | Msa1028270 | 0.842883 | 1.970049e-58 | -8.615850e-47 |
| Msa0477020 | Msa1028270 | 0.821098 | 4.837623e-53 | -8.615850e-47 |
| Msa0993530 | Msa1028270 | 0.807979 | 3.878498e-50 | -8.615850e-47 |
| Msa1015060 | Msa1028270 | 0.820250 | 7.573564e-53 | -8.615850e-47 |
| Msa1016110 | Msa1028270 | 0.802798 | 4.728381e-49 | -8.615850e-47 |
| Msa1026760 | Msa1028270 | 0.800969 | 1.122884e-48 | -8.615850e-47 |
| Msa1028270 | Msa1056640 | 0.802812 | 4.697338e-49 | -8.615850e-47 |
| Msa1028270 | Msa1066870 | 0.822879 | 1.870613e-53 | -8.615850e-47 |
| Msa1028270 | Msa1077670 | 0.804826 | 1.792984e-49 | -8.615850e-47 |
| Msa1028270 | Msa1087470 | 0.848009 | 8.053683e-60 | -8.615850e-47 |
| Msa1028270 | Msa1092820 | 0.813891 | 2.034186e-51 | -8.615850e-47 |
| Msa1028270 | Msa1112370 | 0.907677 | 3.913843e-81 | -8.615850e-47 |
| Msa1028270 | Msa1162550 | -0.801136 | 1.038363e-48 | -8.615850e-47 |
| Msa1028270 | Msa1229600 | 0.801769 | 7.701016e-49 | -8.615850e-47 |
| Msa1028270 | Msa1237030 | 0.807796 | 4.243419e-50 | -8.615850e-47 |
| Msa1028270 | Msa1238490 | 0.805289 | 1.434663e-49 | -8.615850e-47 |
| Msa1028270 | Msa1247760 | 0.816714 | 4.797212e-52 | -8.615850e-47 |
| Msa1028270 | Msa1247920 | 0.820349 | 7.187390e-53 | -8.615850e-47 |
| Msa1028270 | Msa1265070 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa1028270 | Msa1308590 | 0.812623 | 3.862360e-51 | -8.615850e-47 |
| Msa1028270 | Msa1362510 | 0.801635 | 8.203860e-49 | -8.615850e-47 |
| Msa1028270 | Msa1365040 | -0.801010 | 1.101790e-48 | -8.615850e-47 |
| Msa1028270 | Msa1369530 | 0.802484 | 5.488899e-49 | -8.615850e-47 |
| Msa1028270 | Msa1371310 | 0.827723 | 1.336685e-54 | -8.615850e-47 |
| Msa1028270 | Msa1376890 | 0.819930 | 8.964720e-53 | -8.615850e-47 |
| Msa1028270 | Msa1393410 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
| Msa1028270 | Msa1395530 | 0.801060 | 1.075971e-48 | -8.615850e-47 |
| Msa1028270 | Msa1397260 | 0.814611 | 1.410552e-51 | -8.615850e-47 |
| Msa1028270 | Msa1401140 | 0.817356 | 3.440327e-52 | -8.615850e-47 |
| Msa1028270 | Msa1408790 | 0.835789 | 1.367226e-56 | -8.615850e-47 |
| Msa1028270 | Msa1436040 | 0.841965 | 3.450851e-58 | -8.615850e-47 |
| Msa0243690 | Msa1028270 | 0.802978 | 4.340108e-49 | -8.615850e-47 |
| Msa0253370 | Msa1028270 | 0.825404 | 4.775710e-54 | -8.615850e-47 |
| Msa0266000 | Msa1028270 | -0.855418 | 6.393392e-62 | -8.615850e-47 |
| Msa0280570 | Msa1028270 | 0.815713 | 8.028461e-52 | -8.615850e-47 |
| Msa0292180 | Msa1028270 | 0.826143 | 3.189705e-54 | -8.615850e-47 |
| Msa0333720 | Msa1028270 | -0.810782 | 9.714402e-51 | -8.615850e-47 |
| Msa0335040 | Msa1028270 | 0.828093 | 1.088861e-54 | -8.615850e-47 |
| Msa0343590 | Msa1028270 | 0.800547 | 1.369425e-48 | -8.615850e-47 |
| Msa0492880 | Msa1028270 | 0.804952 | 1.687488e-49 | -8.615850e-47 |
| Msa0505060 | Msa1028270 | 0.800219 | 1.597005e-48 | -8.615850e-47 |
| Msa0511250 | Msa1028270 | 0.880561 | 4.961473e-70 | -8.615850e-47 |
| Msa0517490 | Msa1028270 | 0.861160 | 1.246705e-63 | -8.615850e-47 |
| Msa0518560 | Msa1028270 | 0.806580 | 7.677873e-50 | -8.615850e-47 |
| Msa0570640 | Msa1028270 | 0.801820 | 7.517284e-49 | -8.615850e-47 |
| Msa0598460 | Msa1028270 | 0.809678 | 1.680730e-50 | -8.615850e-47 |
| Msa0863800 | Msa1028270 | 0.833428 | 5.363044e-56 | -8.615850e-47 |
| Msa0893810 | Msa1028270 | 0.806658 | 7.390128e-50 | -8.615850e-47 |
| Msa0908170 | Msa1028270 | 0.811508 | 6.760330e-51 | -8.615850e-47 |
| Msa0930400 | Msa1028270 | -0.809505 | 1.830874e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028270 | MtrunA17_Chr7g0248021 | 98.425 | 381 | 3 | 2 | 1 | 379 | 1 | 380 | 0.0 | 766 |
| Msa1028270 | MtrunA17_Chr4g0045721 | 56.484 | 347 | 149 | 1 | 29 | 375 | 18 | 362 | 1.18e-143 | 412 |
| Msa1028270 | MtrunA17_Chr1g0191041 | 62.658 | 316 | 118 | 0 | 58 | 373 | 6 | 321 | 7.38e-137 | 393 |
| Msa1028270 | MtrunA17_Chr5g0394491 | 61.709 | 316 | 121 | 0 | 58 | 373 | 6 | 321 | 1.35e-136 | 392 |
| Msa1028270 | MtrunA17_Chr4g0045781 | 60.748 | 321 | 126 | 0 | 55 | 375 | 61 | 381 | 2.12e-136 | 394 |
| Msa1028270 | MtrunA17_Chr1g0191051 | 61.146 | 314 | 122 | 0 | 60 | 373 | 7 | 320 | 5.03e-135 | 388 |
| Msa1028270 | MtrunA17_Chr1g0205381 | 61.392 | 316 | 122 | 0 | 58 | 373 | 6 | 321 | 4.68e-134 | 386 |
| Msa1028270 | MtrunA17_Chr4g0045771 | 52.066 | 363 | 163 | 3 | 13 | 375 | 2 | 353 | 2.05e-133 | 385 |
| Msa1028270 | MtrunA17_Chr1g0191061 | 53.090 | 356 | 121 | 2 | 64 | 373 | 25 | 380 | 2.05e-121 | 356 |
| Msa1028270 | MtrunA17_Chr7g0254401 | 49.162 | 358 | 169 | 2 | 16 | 373 | 24 | 368 | 2.81e-115 | 340 |
| Msa1028270 | MtrunA17_Chr1g0191071 | 55.639 | 266 | 113 | 1 | 108 | 373 | 1 | 261 | 9.89e-97 | 289 |
| Msa1028270 | MtrunA17_Chr5g0446431 | 29.226 | 349 | 188 | 6 | 68 | 359 | 52 | 398 | 3.39e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1028270 | AT3G61440.1 | 79.887 | 353 | 66 | 1 | 27 | 379 | 21 | 368 | 0.0 | 573 |
| Msa1028270 | AT3G61440.4 | 78.788 | 297 | 58 | 1 | 27 | 323 | 21 | 312 | 4.02e-169 | 476 |
| Msa1028270 | AT3G61440.2 | 84.191 | 272 | 43 | 0 | 108 | 379 | 1 | 272 | 7.00e-166 | 465 |
| Msa1028270 | AT3G61440.3 | 85.020 | 247 | 37 | 0 | 133 | 379 | 1 | 247 | 3.42e-151 | 427 |
| Msa1028270 | AT3G59760.1 | 60.559 | 322 | 127 | 0 | 57 | 378 | 110 | 431 | 1.99e-139 | 404 |
| Msa1028270 | AT3G59760.3 | 60.815 | 319 | 125 | 0 | 57 | 375 | 110 | 428 | 2.00e-139 | 404 |
| Msa1028270 | AT4G14880.5 | 60.759 | 316 | 124 | 0 | 58 | 373 | 3 | 318 | 2.37e-136 | 392 |
| Msa1028270 | AT4G14880.3 | 60.759 | 316 | 124 | 0 | 58 | 373 | 3 | 318 | 2.37e-136 | 392 |
| Msa1028270 | AT4G14880.4 | 60.759 | 316 | 124 | 0 | 58 | 373 | 3 | 318 | 2.37e-136 | 392 |
| Msa1028270 | AT4G14880.2 | 60.759 | 316 | 124 | 0 | 58 | 373 | 3 | 318 | 2.37e-136 | 392 |
| Msa1028270 | AT4G14880.1 | 60.759 | 316 | 124 | 0 | 58 | 373 | 3 | 318 | 2.37e-136 | 392 |
| Msa1028270 | AT2G43750.1 | 59.248 | 319 | 130 | 0 | 57 | 375 | 72 | 390 | 1.56e-135 | 392 |
| Msa1028270 | AT2G43750.2 | 59.248 | 319 | 130 | 0 | 57 | 375 | 72 | 390 | 1.56e-135 | 392 |
| Msa1028270 | AT3G59760.2 | 60.345 | 290 | 115 | 0 | 57 | 346 | 110 | 399 | 2.38e-123 | 363 |
| Msa1028270 | AT3G04940.1 | 56.329 | 316 | 138 | 0 | 58 | 373 | 6 | 321 | 1.13e-122 | 357 |
| Msa1028270 | AT3G04940.2 | 56.329 | 316 | 138 | 0 | 58 | 373 | 6 | 321 | 1.13e-122 | 357 |
| Msa1028270 | AT5G28020.2 | 56.051 | 314 | 138 | 0 | 60 | 373 | 7 | 320 | 7.53e-116 | 340 |
| Msa1028270 | AT5G28020.4 | 56.051 | 314 | 138 | 0 | 60 | 373 | 7 | 320 | 7.53e-116 | 340 |
| Msa1028270 | AT5G28020.1 | 56.051 | 314 | 138 | 0 | 60 | 373 | 7 | 320 | 7.53e-116 | 340 |
| Msa1028270 | AT5G28020.3 | 56.051 | 314 | 138 | 0 | 60 | 373 | 7 | 320 | 7.53e-116 | 340 |
| Msa1028270 | AT5G28020.6 | 56.051 | 314 | 138 | 0 | 60 | 373 | 7 | 320 | 7.53e-116 | 340 |
| Msa1028270 | AT3G22460.1 | 59.774 | 266 | 87 | 1 | 108 | 373 | 1 | 246 | 6.76e-112 | 327 |
| Msa1028270 | AT5G28030.1 | 55.096 | 314 | 141 | 0 | 60 | 373 | 7 | 320 | 1.22e-111 | 329 |
| Msa1028270 | AT5G28030.4 | 55.096 | 314 | 141 | 0 | 60 | 373 | 7 | 320 | 1.22e-111 | 329 |
| Msa1028270 | AT5G28030.5 | 55.096 | 314 | 141 | 0 | 60 | 373 | 7 | 320 | 1.22e-111 | 329 |
| Msa1028270 | AT5G28030.2 | 55.096 | 314 | 141 | 0 | 60 | 373 | 7 | 320 | 1.22e-111 | 329 |
| Msa1028270 | AT3G03630.1 | 54.114 | 316 | 135 | 1 | 59 | 374 | 98 | 403 | 2.65e-110 | 329 |
| Msa1028270 | AT5G28030.3 | 53.571 | 252 | 117 | 0 | 60 | 311 | 7 | 258 | 2.57e-86 | 262 |
| Msa1028270 | AT3G22460.2 | 61.538 | 182 | 70 | 0 | 59 | 240 | 7 | 188 | 4.67e-81 | 246 |
| Msa1028270 | AT5G28020.5 | 54.701 | 234 | 106 | 0 | 140 | 373 | 1 | 234 | 2.89e-78 | 241 |
| Msa1028270 | AT1G55880.1 | 28.906 | 384 | 209 | 9 | 41 | 365 | 21 | 399 | 2.40e-38 | 142 |
| Msa1028270 | AT1G55880.2 | 29.259 | 270 | 149 | 4 | 41 | 269 | 21 | 289 | 1.65e-31 | 122 |
Find 120 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATCAGTTTGGCATTTA+TGG | 0.111575 | 7_1:+60967382 | Msa1028270:CDS |
| GAAGAAGAAGAAGGAGAATT+TGG | 0.156763 | 7_1:-60965992 | None:intergenic |
| GAGAAAATCACCTTAACATT+AGG | 0.229682 | 7_1:-60968070 | None:intergenic |
| GGTAGCGGAGGCACGGTTTC+CGG | 0.231220 | 7_1:+60968019 | Msa1028270:CDS |
| TTTCAATCATATTAGATATA+TGG | 0.257432 | 7_1:+60968164 | Msa1028270:intron |
| GTAGCGGAGGCACGGTTTCC+GGG | 0.287571 | 7_1:+60968020 | Msa1028270:CDS |
| CAGACTGTTCATCCAAGTTT+CGG | 0.294327 | 7_1:+60968948 | Msa1028270:intron |
| AGAAAATCACCTTAACATTA+GGG | 0.297633 | 7_1:-60968069 | None:intergenic |
| CAGCTTCTGTTCGAAGGTCT+TGG | 0.298409 | 7_1:-60968998 | None:intergenic |
| ATGTAAATTATGTCTTCTTT+TGG | 0.317824 | 7_1:+60969318 | Msa1028270:three_prime_UTR |
| AAACAACAGGTCCTGAGATA+TGG | 0.318320 | 7_1:+60967954 | Msa1028270:CDS |
| AGGGTTTGTATGAGAGCATT+TGG | 0.332544 | 7_1:+60967464 | Msa1028270:CDS |
| TTGATTCAACTAACCTTTCC+AGG | 0.333739 | 7_1:-60967247 | None:intergenic |
| AGACTGTTCATCCAAGTTTC+GGG | 0.334413 | 7_1:+60968949 | Msa1028270:intron |
| AACGTTACCTTAGTATTGGC+TGG | 0.338770 | 7_1:-60967599 | None:intergenic |
| GACATATTTGTGATGGGAAT+AGG | 0.357383 | 7_1:+60967998 | Msa1028270:CDS |
| ACAGGTCCTCATCAAATAAC+TGG | 0.359927 | 7_1:+60968325 | Msa1028270:intron |
| TTCTAGGTTGGTATATCGTC+TGG | 0.366637 | 7_1:+60968705 | Msa1028270:intron |
| AATGGGAGGAACAGTGAAAA+AGG | 0.372245 | 7_1:+60967520 | Msa1028270:CDS |
| TGGATTCAAACCAGACATAT+TGG | 0.377923 | 7_1:+60968357 | Msa1028270:CDS |
| AATGCAAGAATCGAGAAATT+AGG | 0.379372 | 7_1:-60965882 | None:intergenic |
| TACCATGAGTCCTTCTTTCA+AGG | 0.380319 | 7_1:-60968545 | None:intergenic |
| TGTTGCAGCATAAAAGCATT+TGG | 0.385420 | 7_1:-60967566 | None:intergenic |
| ATCAGTTTGCCTTTGTTCTC+AGG | 0.387081 | 7_1:-60968765 | None:intergenic |
| AACCATCTTATATCCCTTCA+TGG | 0.389444 | 7_1:-60967408 | None:intergenic |
| GTTCCTCCCATTCCTTTCGT+TGG | 0.398796 | 7_1:-60967509 | None:intergenic |
| CTTTCCAAGCTTGTGTAAGA+TGG | 0.401441 | 7_1:-60967440 | None:intergenic |
| CCTCATCAAATAACTGGAAA+TGG | 0.407277 | 7_1:+60968331 | Msa1028270:CDS |
| ATCAATCTCCTCATCATCAT+TGG | 0.416899 | 7_1:-60966094 | None:intergenic |
| TTACATCATACTCACAAATT+CGG | 0.419867 | 7_1:-60969301 | None:intergenic |
| GGCATTTATGGCTGCCATGA+AGG | 0.421016 | 7_1:+60967394 | Msa1028270:CDS |
| ATCACAAAACCCTAATGTTA+AGG | 0.422500 | 7_1:+60968060 | Msa1028270:CDS |
| CTTACACAAGCTTGGAAAGA+AGG | 0.427704 | 7_1:+60967444 | Msa1028270:CDS |
| GGAGGCACGGTTTCCGGGGT+TGG | 0.433673 | 7_1:+60968025 | Msa1028270:CDS |
| AAAAGGAATTTGATAACTCC+TGG | 0.443852 | 7_1:+60967229 | Msa1028270:CDS |
| TGTTAACGTTACCTTAGTAT+TGG | 0.446582 | 7_1:-60967603 | None:intergenic |
| CAGACCGGCACTTGCTATGA+TGG | 0.446594 | 7_1:+60967195 | Msa1028270:intron |
| CATATTGGACATGGATGTAA+TGG | 0.448326 | 7_1:+60968372 | Msa1028270:CDS |
| AGGCAACATGGGAATCAGTT+TGG | 0.448530 | 7_1:+60967373 | Msa1028270:CDS |
| ACATCCATGTCCAATATGTC+TGG | 0.450862 | 7_1:-60968367 | None:intergenic |
| AGACATTAATCGACCGAGAC+TGG | 0.451069 | 7_1:-60969032 | None:intergenic |
| AGATATCGTTCCCCGAAACT+TGG | 0.451933 | 7_1:-60968960 | None:intergenic |
| TACCTTAGTATTGGCTGGGT+TGG | 0.462384 | 7_1:-60967594 | None:intergenic |
| CAAATAACTGGAAATGGTGT+TGG | 0.466995 | 7_1:+60968337 | Msa1028270:CDS |
| TTCCAACCCAGCCAATACTA+AGG | 0.471629 | 7_1:+60967592 | Msa1028270:CDS |
| ATTCCCATGTTGCCTGATGT+TGG | 0.472301 | 7_1:-60967365 | None:intergenic |
| CACAGTTGCAGCACTCAGAT+TGG | 0.473290 | 7_1:+60968734 | Msa1028270:CDS |
| TTGGTACCAGGAAGATCTTT+AGG | 0.474343 | 7_1:-60966178 | None:intergenic |
| AACAACAGGTCCTGAGATAT+GGG | 0.481398 | 7_1:+60967955 | Msa1028270:CDS |
| GATTTGCCTAAAGATCTTCC+TGG | 0.483439 | 7_1:+60966172 | Msa1028270:CDS |
| GATGTTACAGTCTATATAAG+TGG | 0.495126 | 7_1:+60965937 | Msa1028270:five_prime_UTR |
| TGATGGAAGATGCTGAGAAA+AGG | 0.498728 | 7_1:+60967212 | Msa1028270:CDS |
| CTCGATTCTTGCATTGCAAG+TGG | 0.500392 | 7_1:+60965890 | Msa1028270:five_prime_UTR |
| GACAATGCATGCCACTTGGA+TGG | 0.504836 | 7_1:-60969380 | None:intergenic |
| TTTGTATCCTCCCATATCTC+AGG | 0.504891 | 7_1:-60967965 | None:intergenic |
| TCCTCATCATCATTGGATGC+TGG | 0.506377 | 7_1:-60966087 | None:intergenic |
| GCATTTATGGCTGCCATGAA+GGG | 0.510121 | 7_1:+60967395 | Msa1028270:CDS |
| ACGGATCCAACGAAAGGAAT+GGG | 0.510673 | 7_1:+60967503 | Msa1028270:CDS |
| AGTTAACATGGCTAGGACAT+TGG | 0.511456 | 7_1:+60968522 | Msa1028270:CDS |
| TGGAGCTGAATTGATTCTCA+CGG | 0.517514 | 7_1:+60967484 | Msa1028270:CDS |
| TATGCCATCTTACACAAGCT+TGG | 0.524193 | 7_1:+60967436 | Msa1028270:CDS |
| TTACACAAGCTTGGAAAGAA+GGG | 0.524356 | 7_1:+60967445 | Msa1028270:CDS |
| GAGATATGGGAGGATACAAA+TGG | 0.524396 | 7_1:+60967968 | Msa1028270:CDS |
| CACGGATCCAACGAAAGGAA+TGG | 0.526798 | 7_1:+60967502 | Msa1028270:CDS |
| CATTTGGTGTGGATTCCAAA+AGG | 0.529158 | 7_1:-60967550 | None:intergenic |
| ATTCTGATAGAGCCAACATC+AGG | 0.532002 | 7_1:+60967353 | Msa1028270:CDS |
| CTTGCATTGCAAGTGGGAGG+AGG | 0.533423 | 7_1:+60965897 | Msa1028270:five_prime_UTR |
| ATTCGACAATGCATGCCACT+TGG | 0.540998 | 7_1:-60969384 | None:intergenic |
| CAGTGAAGATGCAGTTAACA+TGG | 0.541587 | 7_1:+60968510 | Msa1028270:CDS |
| AGGACATTGGCCTTGAAAGA+AGG | 0.544017 | 7_1:+60968535 | Msa1028270:CDS |
| ACGTTACCTTAGTATTGGCT+GGG | 0.545493 | 7_1:-60967598 | None:intergenic |
| GTGCTGAATGGTGGTAAACC+TGG | 0.548416 | 7_1:+60968209 | Msa1028270:CDS |
| ACAATGCATGCCACTTGGAT+GGG | 0.556112 | 7_1:-60969379 | None:intergenic |
| TATCTTAACAAAGTAACTGA+AGG | 0.556227 | 7_1:+60966756 | Msa1028270:CDS |
| GTTTGCCTTTGTTCTCAGGA+AGG | 0.556474 | 7_1:-60968761 | None:intergenic |
| TGCCATGAAGGGATATAAGA+TGG | 0.557496 | 7_1:+60967406 | Msa1028270:CDS |
| TTCAGCACATTACTTTCAGA+TGG | 0.557589 | 7_1:-60968194 | None:intergenic |
| CAGGTGCATTTCGAAACAAC+AGG | 0.558100 | 7_1:+60967941 | Msa1028270:intron |
| TGAAAACATGCAGCCAGTCT+CGG | 0.562721 | 7_1:+60969019 | Msa1028270:CDS |
| ATGTTACAGTCTATATAAGT+GGG | 0.563439 | 7_1:+60965938 | Msa1028270:five_prime_UTR |
| AGAGCCAACATCAGGCAACA+TGG | 0.563901 | 7_1:+60967361 | Msa1028270:CDS |
| CTACTGCTAGCATCAAAGAC+AGG | 0.569459 | 7_1:+60966820 | Msa1028270:CDS |
| GAACAAAGGCAAACTGATTG+TGG | 0.571821 | 7_1:+60968770 | Msa1028270:CDS |
| AGCTGTGTTGTGGAGTTACA+TGG | 0.572386 | 7_1:+60969080 | Msa1028270:three_prime_UTR |
| TCGATTCTTGCATTGCAAGT+GGG | 0.575714 | 7_1:+60965891 | Msa1028270:five_prime_UTR |
| GAATTTGATAACTCCTGGAA+AGG | 0.576005 | 7_1:+60967234 | Msa1028270:CDS |
| CAGCATAAAAGCATTTGGTG+TGG | 0.576924 | 7_1:-60967561 | None:intergenic |
| GGCCTTGAAAGAAGGACTCA+TGG | 0.577659 | 7_1:+60968543 | Msa1028270:CDS |
| ACAAGTTGACATATTTGTGA+TGG | 0.584399 | 7_1:+60967991 | Msa1028270:CDS |
| CCATTTCCAGTTATTTGATG+AGG | 0.589789 | 7_1:-60968331 | None:intergenic |
| TGCTAATGATGATGATGAAG+AGG | 0.591847 | 7_1:-60966056 | None:intergenic |
| CAAGTTGACATATTTGTGAT+GGG | 0.592268 | 7_1:+60967992 | Msa1028270:CDS |
| GGGAATAGGTAGCGGAGGCA+CGG | 0.600122 | 7_1:+60968012 | Msa1028270:CDS |
| AACAAAGTAACTGAAGGATG+TGG | 0.601957 | 7_1:+60966762 | Msa1028270:CDS |
| TCTTCCATCATAGCAAGTGC+CGG | 0.604090 | 7_1:-60967199 | None:intergenic |
| GCCAGCATCCAATGATGATG+AGG | 0.606622 | 7_1:+60966086 | Msa1028270:CDS |
| CAAACCAGACATATTGGACA+TGG | 0.607682 | 7_1:+60968363 | Msa1028270:CDS |
| CTGTCTTTGATGCTAGCAGT+AGG | 0.608366 | 7_1:-60966819 | None:intergenic |
| ATCATATTAGATATATGGAG+TGG | 0.610130 | 7_1:+60968169 | Msa1028270:intron |
| AAGATGCAGTTAACATGGCT+AGG | 0.610341 | 7_1:+60968515 | Msa1028270:CDS |
| GAGCCAACATCAGGCAACAT+GGG | 0.610601 | 7_1:+60967362 | Msa1028270:CDS |
| TCTAGTTGTATGAAAACTCG+TGG | 0.614683 | 7_1:-60969056 | None:intergenic |
| TCTGAAAGTAATGTGCTGAA+TGG | 0.619543 | 7_1:+60968197 | Msa1028270:CDS |
| TTTGTGATGGGAATAGGTAG+CGG | 0.619890 | 7_1:+60968004 | Msa1028270:CDS |
| AAAAGATGAAGAATCAACAC+TGG | 0.622283 | 7_1:-60966134 | None:intergenic |
| ATGATGAAGAGGTTCTCTTG+AGG | 0.624060 | 7_1:-60966045 | None:intergenic |
| ATTCTTGCATTGCAAGTGGG+AGG | 0.626591 | 7_1:+60965894 | Msa1028270:five_prime_UTR |
| TCGAAGGTCTTGGAACAAGA+CGG | 0.631912 | 7_1:-60968988 | None:intergenic |
| ACAACTAGAAAGCTGTGTTG+TGG | 0.633105 | 7_1:+60969070 | Msa1028270:three_prime_UTR |
| ATTCTCACGGATCCAACGAA+AGG | 0.634433 | 7_1:+60967497 | Msa1028270:CDS |
| TTTAAGATATTGTCCAACCC+CGG | 0.638530 | 7_1:-60968038 | None:intergenic |
| GCAAGAATCGAGAAATTAGG+TGG | 0.649332 | 7_1:-60965879 | None:intergenic |
| GACTGTTCATCCAAGTTTCG+GGG | 0.652256 | 7_1:+60968950 | Msa1028270:intron |
| GCTAACCTTCCTGAGAACAA+AGG | 0.659190 | 7_1:+60968756 | Msa1028270:CDS |
| GAAAGTAATGTGCTGAATGG+TGG | 0.674745 | 7_1:+60968200 | Msa1028270:CDS |
| GTGATGGGAATAGGTAGCGG+AGG | 0.681582 | 7_1:+60968007 | Msa1028270:CDS |
| ACTTTGTTAAGATAAACAAG+TGG | 0.682462 | 7_1:-60966747 | None:intergenic |
| TTAAAGCAGACCCATCCAAG+TGG | 0.693145 | 7_1:+60969369 | Msa1028270:three_prime_UTR |
| AACAGGTCCTGAGATATGGG+AGG | 0.695778 | 7_1:+60967958 | Msa1028270:CDS |
| GATCCAACGAAAGGAATGGG+AGG | 0.697448 | 7_1:+60967506 | Msa1028270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTTCTTGAATTTT+GGG | - | chr7_1:60966389-60966408 | None:intergenic | 10.0% |
| !!! | AAAAAAAATTTCTTGAATTT+TGG | - | chr7_1:60966390-60966409 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTGTATATTTTTT+AGG | - | chr7_1:60967102-60967121 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTGA+AGG | - | chr7_1:60967851-60967870 | None:intergenic | 10.0% |
| !!! | TTAAATTTTAGAACATATTT+TGG | - | chr7_1:60969278-60969297 | None:intergenic | 10.0% |
| !!! | ATACATAACTTACTTTAAAA+TGG | + | chr7_1:60967913-60967932 | Msa1028270:intron | 15.0% |
| !!! | TACATAACTTACTTTAAAAT+GGG | + | chr7_1:60967914-60967933 | Msa1028270:intron | 15.0% |
| !! | TATGATTGAAAAAATTTCAA+AGG | - | chr7_1:60968155-60968174 | None:intergenic | 15.0% |
| !! | TTTCAATCATATTAGATATA+TGG | + | chr7_1:60968164-60968183 | Msa1028270:intron | 15.0% |
| !! | CATTGAATAAGAGAAAAAAT+TGG | - | chr7_1:60966681-60966700 | None:intergenic | 20.0% |
| !!! | CAATTTATTTTTCAGCTTAT+TGG | + | chr7_1:60966717-60966736 | Msa1028270:intron | 20.0% |
| !!! | AAAGGAATTTGAAATATAGA+GGG | - | chr7_1:60966856-60966875 | None:intergenic | 20.0% |
| !!! | AAAAGGAATTTGAAATATAG+AGG | - | chr7_1:60966857-60966876 | None:intergenic | 20.0% |
| !! | GTAATATGAATTGTAATCTT+AGG | - | chr7_1:60968095-60968114 | None:intergenic | 20.0% |
| !! | TATTATTAAGGTGAAATTCA+TGG | - | chr7_1:60968634-60968653 | None:intergenic | 20.0% |
| !! | CTTGCAATTCAATATTATTA+AGG | - | chr7_1:60968646-60968665 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCGAATTTTTCT+AGG | + | chr7_1:60968689-60968708 | Msa1028270:intron | 20.0% |
| !!! | ATGTAAATTATGTCTTCTTT+TGG | + | chr7_1:60969318-60969337 | Msa1028270:three_prime_UTR | 20.0% |
| ! | ATGTTACAGTCTATATAAGT+GGG | + | chr7_1:60965938-60965957 | Msa1028270:five_prime_UTR | 25.0% |
| !!! | TGAAACATGTTTTTTGATGT+TGG | - | chr7_1:60966200-60966219 | None:intergenic | 25.0% |
| ! | ATAGTACTTTGTTCCTTAAT+TGG | + | chr7_1:60966260-60966279 | Msa1028270:intron | 25.0% |
| !! | AGTTGGATAGAGAAATATTT+TGG | - | chr7_1:60966360-60966379 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTACAGATACTAG+TGG | + | chr7_1:60966403-60966422 | Msa1028270:intron | 25.0% |
| ! | AATCATTAGATGCATACAAA+AGG | + | chr7_1:60966488-60966507 | Msa1028270:intron | 25.0% |
| !!! | TCAGTTCACTTTTTATCAAA+AGG | + | chr7_1:60966560-60966579 | Msa1028270:intron | 25.0% |
| ! | AATGTTTGTTCTTCAAACTT+TGG | - | chr7_1:60966588-60966607 | None:intergenic | 25.0% |
| !!! | TTATTTTTCAGCTTATTGGT+AGG | + | chr7_1:60966721-60966740 | Msa1028270:intron | 25.0% |
| ! | ACTTTGTTAAGATAAACAAG+TGG | - | chr7_1:60966750-60966769 | None:intergenic | 25.0% |
| ! | TATCTTAACAAAGTAACTGA+AGG | + | chr7_1:60966756-60966775 | Msa1028270:CDS | 25.0% |
| !! | AAGGAATTTGAAATATAGAG+GGG | - | chr7_1:60966855-60966874 | None:intergenic | 25.0% |
| ! | AAATTCGGTCAAATTTAAAG+CGG | - | chr7_1:60966887-60966906 | None:intergenic | 25.0% |
| !! | TTTACTTGATTGGTCAAATT+CGG | - | chr7_1:60966902-60966921 | None:intergenic | 25.0% |
| ! | ATTCATGTGATTTACTTGAT+TGG | - | chr7_1:60966912-60966931 | None:intergenic | 25.0% |
| ! | ACATAATTATGCGTATATGT+TGG | + | chr7_1:60967054-60967073 | Msa1028270:intron | 25.0% |
| ! | TACAAGAAAAAATCTCAAGA+AGG | + | chr7_1:60967110-60967129 | Msa1028270:intron | 25.0% |
| !! | CTATTTGACAGAATTTTGTA+CGG | - | chr7_1:60967711-60967730 | None:intergenic | 25.0% |
| !!! | TTACTTTAAAATGGGAAAAC+AGG | + | chr7_1:60967922-60967941 | Msa1028270:intron | 25.0% |
| ! | AGAAAATCACCTTAACATTA+GGG | - | chr7_1:60968072-60968091 | None:intergenic | 25.0% |
| ! | ATCATATTAGATATATGGAG+TGG | + | chr7_1:60968169-60968188 | Msa1028270:intron | 25.0% |
| ! | ATATACATGTACTTACTTCT+AGG | - | chr7_1:60968405-60968424 | None:intergenic | 25.0% |
| !! | TCATTTGCTTGCATATTTTA+AGG | - | chr7_1:60968809-60968828 | None:intergenic | 25.0% |
| !!! | ATGCTTTGTAATGTTTTGTT+TGG | + | chr7_1:60969221-60969240 | Msa1028270:three_prime_UTR | 25.0% |
| ! | TTACATCATACTCACAAATT+CGG | - | chr7_1:60969304-60969323 | None:intergenic | 25.0% |
| AATGCAAGAATCGAGAAATT+AGG | - | chr7_1:60965885-60965904 | None:intergenic | 30.0% | |
| GATGTTACAGTCTATATAAG+TGG | + | chr7_1:60965937-60965956 | Msa1028270:five_prime_UTR | 30.0% | |
| TTCTTCTTCTTCTTCTTCAA+TGG | + | chr7_1:60966006-60966025 | Msa1028270:exon | 30.0% | |
| AAAAGATGAAGAATCAACAC+TGG | - | chr7_1:60966137-60966156 | None:intergenic | 30.0% | |
| CATCAAAAAACATGTTTCAC+AGG | + | chr7_1:60966201-60966220 | Msa1028270:CDS | 30.0% | |
| !! | TGAATTTTGGGTAATGAAGT+TGG | - | chr7_1:60966377-60966396 | None:intergenic | 30.0% |
| ! | AGGAATTTGAAATATAGAGG+GGG | - | chr7_1:60966854-60966873 | None:intergenic | 30.0% |
| ! | TTTAAAGCGGTATCTACAAA+AGG | - | chr7_1:60966874-60966893 | None:intergenic | 30.0% |
| ! | AAAAGGAATTTGATAACTCC+TGG | + | chr7_1:60967229-60967248 | Msa1028270:CDS | 30.0% |
| ATGTAAACAACGAGCAAAAT+TGG | - | chr7_1:60967287-60967306 | None:intergenic | 30.0% | |
| TTCGTGTTTGTGTTAATTGA+TGG | + | chr7_1:60967322-60967341 | Msa1028270:intron | 30.0% | |
| TGTTAACGTTACCTTAGTAT+TGG | - | chr7_1:60967606-60967625 | None:intergenic | 30.0% | |
| TACGTATTTATGTTCAAGAC+AGG | + | chr7_1:60967639-60967658 | Msa1028270:intron | 30.0% | |
| ACGTATTTATGTTCAAGACA+GGG | + | chr7_1:60967640-60967659 | Msa1028270:intron | 30.0% | |
| GGATCATGAAAAATAGTAGT+TGG | - | chr7_1:60967778-60967797 | None:intergenic | 30.0% | |
| ! | ACAAGTTGACATATTTGTGA+TGG | + | chr7_1:60967991-60968010 | Msa1028270:CDS | 30.0% |
| ! | CAAGTTGACATATTTGTGAT+GGG | + | chr7_1:60967992-60968011 | Msa1028270:CDS | 30.0% |
| ATCACAAAACCCTAATGTTA+AGG | + | chr7_1:60968060-60968079 | Msa1028270:CDS | 30.0% | |
| GAGAAAATCACCTTAACATT+AGG | - | chr7_1:60968073-60968092 | None:intergenic | 30.0% | |
| ! | TTCTTCGAATTTTTCTAGGT+TGG | + | chr7_1:60968693-60968712 | Msa1028270:intron | 30.0% |
| ! | TTAGGTGGTGATCCTATTTT+TGG | - | chr7_1:60965867-60965886 | None:intergenic | 35.0% |
| GAAGAAGAAGAAGGAGAATT+TGG | - | chr7_1:60965995-60966014 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr7_1:60966004-60966023 | None:intergenic | 35.0% | |
| ! | TGCTAATGATGATGATGAAG+AGG | - | chr7_1:60966059-60966078 | None:intergenic | 35.0% |
| ATCAATCTCCTCATCATCAT+TGG | - | chr7_1:60966097-60966116 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGATGTTGGTACC+AGG | - | chr7_1:60966193-60966212 | None:intergenic | 35.0% |
| ! | ATGCTGTAACTGTTTTGCAT+TGG | + | chr7_1:60966291-60966310 | Msa1028270:intron | 35.0% |
| !!! | AAATATTTTGGCCATACACG+TGG | - | chr7_1:60966348-60966367 | None:intergenic | 35.0% |
| CAGCAGAACATCAACAAAAT+TGG | - | chr7_1:60966449-60966468 | None:intergenic | 35.0% | |
| AACAAAGTAACTGAAGGATG+TGG | + | chr7_1:60966762-60966781 | Msa1028270:CDS | 35.0% | |
| ! | TTTGAAATATAGAGGGGGTA+AGG | - | chr7_1:60966849-60966868 | None:intergenic | 35.0% |
| TCAAGAAGGTCGTGTATTTA+GGG | + | chr7_1:60967124-60967143 | Msa1028270:intron | 35.0% | |
| TTTCTTGAATTTCGACAGAC+CGG | + | chr7_1:60967180-60967199 | Msa1028270:intron | 35.0% | |
| ! | GAATTTGATAACTCCTGGAA+AGG | + | chr7_1:60967234-60967253 | Msa1028270:CDS | 35.0% |
| TTGATTCAACTAACCTTTCC+AGG | - | chr7_1:60967250-60967269 | None:intergenic | 35.0% | |
| AACCATCTTATATCCCTTCA+TGG | - | chr7_1:60967411-60967430 | None:intergenic | 35.0% | |
| TTACACAAGCTTGGAAAGAA+GGG | + | chr7_1:60967445-60967464 | Msa1028270:CDS | 35.0% | |
| ! | GAAAAAGGCTTATGACCTTT+TGG | + | chr7_1:60967535-60967554 | Msa1028270:CDS | 35.0% |
| !! | TGTTGCAGCATAAAAGCATT+TGG | - | chr7_1:60967569-60967588 | None:intergenic | 35.0% |
| !! | CTACTATTTTTCATGATCCG+CGG | + | chr7_1:60967779-60967798 | Msa1028270:intron | 35.0% |
| ! | GACATATTTGTGATGGGAAT+AGG | + | chr7_1:60967998-60968017 | Msa1028270:CDS | 35.0% |
| ! | TTTAAGATATTGTCCAACCC+CGG | - | chr7_1:60968041-60968060 | None:intergenic | 35.0% |
| TTCAGCACATTACTTTCAGA+TGG | - | chr7_1:60968197-60968216 | None:intergenic | 35.0% | |
| TCTGAAAGTAATGTGCTGAA+TGG | + | chr7_1:60968197-60968216 | Msa1028270:CDS | 35.0% | |
| GAAACAAAATGATGCTTACC+AGG | - | chr7_1:60968230-60968249 | None:intergenic | 35.0% | |
| ATTTGATGAGGACCTGTATA+TGG | - | chr7_1:60968322-60968341 | None:intergenic | 35.0% | |
| CCATTTCCAGTTATTTGATG+AGG | - | chr7_1:60968334-60968353 | None:intergenic | 35.0% | |
| CCTCATCAAATAACTGGAAA+TGG | + | chr7_1:60968331-60968350 | Msa1028270:CDS | 35.0% | |
| CAAATAACTGGAAATGGTGT+TGG | + | chr7_1:60968337-60968356 | Msa1028270:CDS | 35.0% | |
| TGGATTCAAACCAGACATAT+TGG | + | chr7_1:60968357-60968376 | Msa1028270:CDS | 35.0% | |
| CATATTGGACATGGATGTAA+TGG | + | chr7_1:60968372-60968391 | Msa1028270:CDS | 35.0% | |
| AACATAAGTTTGTGGCAGTT+AGG | - | chr7_1:60968478-60968497 | None:intergenic | 35.0% | |
| CCTACAACAACATAAGTTTG+TGG | - | chr7_1:60968486-60968505 | None:intergenic | 35.0% | |
| CCACAAACTTATGTTGTTGT+AGG | + | chr7_1:60968483-60968502 | Msa1028270:intron | 35.0% | |
| TCTAGTTGTATGAAAACTCG+TGG | - | chr7_1:60969059-60969078 | None:intergenic | 35.0% | |
| ! | TTATGTCTTCTTTTGGCACA+TGG | + | chr7_1:60969325-60969344 | Msa1028270:three_prime_UTR | 35.0% |
| GCAAGAATCGAGAAATTAGG+TGG | - | chr7_1:60965882-60965901 | None:intergenic | 40.0% | |
| TCGATTCTTGCATTGCAAGT+GGG | + | chr7_1:60965891-60965910 | Msa1028270:five_prime_UTR | 40.0% | |
| ATGATGAAGAGGTTCTCTTG+AGG | - | chr7_1:60966048-60966067 | None:intergenic | 40.0% | |
| GATTTGCCTAAAGATCTTCC+TGG | + | chr7_1:60966172-60966191 | Msa1028270:CDS | 40.0% | |
| TTGGTACCAGGAAGATCTTT+AGG | - | chr7_1:60966181-60966200 | None:intergenic | 40.0% | |
| AGCATCACAGTCACCAATTA+AGG | - | chr7_1:60966276-60966295 | None:intergenic | 40.0% | |
| CTCAAGAAGGTCGTGTATTT+AGG | + | chr7_1:60967123-60967142 | Msa1028270:intron | 40.0% | |
| TGATGGAAGATGCTGAGAAA+AGG | + | chr7_1:60967212-60967231 | Msa1028270:CDS | 40.0% | |
| !! | AACGAGCAAAATTGGTGTCA+TGG | - | chr7_1:60967279-60967298 | None:intergenic | 40.0% |
| ATTCTGATAGAGCCAACATC+AGG | + | chr7_1:60967353-60967372 | Msa1028270:CDS | 40.0% | |
| GGGAATCAGTTTGGCATTTA+TGG | + | chr7_1:60967382-60967401 | Msa1028270:CDS | 40.0% | |
| TGCCATGAAGGGATATAAGA+TGG | + | chr7_1:60967406-60967425 | Msa1028270:CDS | 40.0% | |
| TATGCCATCTTACACAAGCT+TGG | + | chr7_1:60967436-60967455 | Msa1028270:CDS | 40.0% | |
| CTTTCCAAGCTTGTGTAAGA+TGG | - | chr7_1:60967443-60967462 | None:intergenic | 40.0% | |
| CTTACACAAGCTTGGAAAGA+AGG | + | chr7_1:60967444-60967463 | Msa1028270:CDS | 40.0% | |
| !! | AGGGTTTGTATGAGAGCATT+TGG | + | chr7_1:60967464-60967483 | Msa1028270:CDS | 40.0% |
| ! | TGGAGCTGAATTGATTCTCA+CGG | + | chr7_1:60967484-60967503 | Msa1028270:CDS | 40.0% |
| AATGGGAGGAACAGTGAAAA+AGG | + | chr7_1:60967520-60967539 | Msa1028270:CDS | 40.0% | |
| !! | CATTTGGTGTGGATTCCAAA+AGG | - | chr7_1:60967553-60967572 | None:intergenic | 40.0% |
| !! | CAGCATAAAAGCATTTGGTG+TGG | - | chr7_1:60967564-60967583 | None:intergenic | 40.0% |
| !! | ACGTTACCTTAGTATTGGCT+GGG | - | chr7_1:60967601-60967620 | None:intergenic | 40.0% |
| !! | AACGTTACCTTAGTATTGGC+TGG | - | chr7_1:60967602-60967621 | None:intergenic | 40.0% |
| CAAATCAATGTTGTCAACCG+CGG | - | chr7_1:60967799-60967818 | None:intergenic | 40.0% | |
| AAACAACAGGTCCTGAGATA+TGG | + | chr7_1:60967954-60967973 | Msa1028270:CDS | 40.0% | |
| AACAACAGGTCCTGAGATAT+GGG | + | chr7_1:60967955-60967974 | Msa1028270:CDS | 40.0% | |
| TTTGTATCCTCCCATATCTC+AGG | - | chr7_1:60967968-60967987 | None:intergenic | 40.0% | |
| GAGATATGGGAGGATACAAA+TGG | + | chr7_1:60967968-60967987 | Msa1028270:CDS | 40.0% | |
| ! | TTTGTGATGGGAATAGGTAG+CGG | + | chr7_1:60968004-60968023 | Msa1028270:CDS | 40.0% |
| GAAAGTAATGTGCTGAATGG+TGG | + | chr7_1:60968200-60968219 | Msa1028270:CDS | 40.0% | |
| CAAGTCTCTTACTGCGAAAT+CGG | + | chr7_1:60968289-60968308 | Msa1028270:intron | 40.0% | |
| ATCGGATGTTGTCCATATAC+AGG | + | chr7_1:60968307-60968326 | Msa1028270:intron | 40.0% | |
| ACAGGTCCTCATCAAATAAC+TGG | + | chr7_1:60968325-60968344 | Msa1028270:intron | 40.0% | |
| CAAACCAGACATATTGGACA+TGG | + | chr7_1:60968363-60968382 | Msa1028270:CDS | 40.0% | |
| ACATCCATGTCCAATATGTC+TGG | - | chr7_1:60968370-60968389 | None:intergenic | 40.0% | |
| CAGTGAAGATGCAGTTAACA+TGG | + | chr7_1:60968510-60968529 | Msa1028270:CDS | 40.0% | |
| AAGATGCAGTTAACATGGCT+AGG | + | chr7_1:60968515-60968534 | Msa1028270:CDS | 40.0% | |
| AGTTAACATGGCTAGGACAT+TGG | + | chr7_1:60968522-60968541 | Msa1028270:CDS | 40.0% | |
| TACCATGAGTCCTTCTTTCA+AGG | - | chr7_1:60968548-60968567 | None:intergenic | 40.0% | |
| !! | TTCTAGGTTGGTATATCGTC+TGG | + | chr7_1:60968705-60968724 | Msa1028270:intron | 40.0% |
| ATCAGTTTGCCTTTGTTCTC+AGG | - | chr7_1:60968768-60968787 | None:intergenic | 40.0% | |
| GAACAAAGGCAAACTGATTG+TGG | + | chr7_1:60968770-60968789 | Msa1028270:CDS | 40.0% | |
| ! | ATGCTTCGCACTGTGATTTT+AGG | + | chr7_1:60968880-60968899 | Msa1028270:intron | 40.0% |
| CAGACTGTTCATCCAAGTTT+CGG | + | chr7_1:60968948-60968967 | Msa1028270:intron | 40.0% | |
| AGACTGTTCATCCAAGTTTC+GGG | + | chr7_1:60968949-60968968 | Msa1028270:intron | 40.0% | |
| ! | TGTTTTCAGCTTCTGTTCGA+AGG | - | chr7_1:60969007-60969026 | None:intergenic | 40.0% |
| ACAACTAGAAAGCTGTGTTG+TGG | + | chr7_1:60969070-60969089 | Msa1028270:three_prime_UTR | 40.0% | |
| CTCGATTCTTGCATTGCAAG+TGG | + | chr7_1:60965890-60965909 | Msa1028270:five_prime_UTR | 45.0% | |
| ATTCTTGCATTGCAAGTGGG+AGG | + | chr7_1:60965894-60965913 | Msa1028270:five_prime_UTR | 45.0% | |
| TCCTCATCATCATTGGATGC+TGG | - | chr7_1:60966090-60966109 | None:intergenic | 45.0% | |
| CTCATATCATGCCACGTGTA+TGG | + | chr7_1:60966334-60966353 | Msa1028270:intron | 45.0% | |
| CTGTCTTTGATGCTAGCAGT+AGG | - | chr7_1:60966822-60966841 | None:intergenic | 45.0% | |
| CTACTGCTAGCATCAAAGAC+AGG | + | chr7_1:60966820-60966839 | Msa1028270:CDS | 45.0% | |
| TCTTCCATCATAGCAAGTGC+CGG | - | chr7_1:60967202-60967221 | None:intergenic | 45.0% | |
| ATTCCCATGTTGCCTGATGT+TGG | - | chr7_1:60967368-60967387 | None:intergenic | 45.0% | |
| AGGCAACATGGGAATCAGTT+TGG | + | chr7_1:60967373-60967392 | Msa1028270:CDS | 45.0% | |
| GCATTTATGGCTGCCATGAA+GGG | + | chr7_1:60967395-60967414 | Msa1028270:CDS | 45.0% | |
| ATTCTCACGGATCCAACGAA+AGG | + | chr7_1:60967497-60967516 | Msa1028270:CDS | 45.0% | |
| ACGGATCCAACGAAAGGAAT+GGG | + | chr7_1:60967503-60967522 | Msa1028270:CDS | 45.0% | |
| TTCCAACCCAGCCAATACTA+AGG | + | chr7_1:60967592-60967611 | Msa1028270:CDS | 45.0% | |
| !! | TACCTTAGTATTGGCTGGGT+TGG | - | chr7_1:60967597-60967616 | None:intergenic | 45.0% |
| CAGGTGCATTTCGAAACAAC+AGG | + | chr7_1:60967941-60967960 | Msa1028270:intron | 45.0% | |
| TGGCAGTTAGGATAAACGCA+AGG | - | chr7_1:60968466-60968485 | None:intergenic | 45.0% | |
| !! | AGGACATTGGCCTTGAAAGA+AGG | + | chr7_1:60968535-60968554 | Msa1028270:CDS | 45.0% |
| GCTAACCTTCCTGAGAACAA+AGG | + | chr7_1:60968756-60968775 | Msa1028270:CDS | 45.0% | |
| GTTTGCCTTTGTTCTCAGGA+AGG | - | chr7_1:60968764-60968783 | None:intergenic | 45.0% | |
| GACTGTTCATCCAAGTTTCG+GGG | + | chr7_1:60968950-60968969 | Msa1028270:intron | 45.0% | |
| AGATATCGTTCCCCGAAACT+TGG | - | chr7_1:60968963-60968982 | None:intergenic | 45.0% | |
| TCGAAGGTCTTGGAACAAGA+CGG | - | chr7_1:60968991-60969010 | None:intergenic | 45.0% | |
| TGAAAACATGCAGCCAGTCT+CGG | + | chr7_1:60969019-60969038 | Msa1028270:CDS | 45.0% | |
| AGACATTAATCGACCGAGAC+TGG | - | chr7_1:60969035-60969054 | None:intergenic | 45.0% | |
| AGCTGTGTTGTGGAGTTACA+TGG | + | chr7_1:60969080-60969099 | Msa1028270:three_prime_UTR | 45.0% | |
| TTAAAGCAGACCCATCCAAG+TGG | + | chr7_1:60969369-60969388 | Msa1028270:three_prime_UTR | 45.0% | |
| ! | ACAATGCATGCCACTTGGAT+GGG | - | chr7_1:60969382-60969401 | None:intergenic | 45.0% |
| !!! | TTTTTTAAACAATTTTTTAT+TGG | + | chr7_1:60966645-60966664 | Msa1028270:intron | 5.0% |
| ! | GCCAGCATCCAATGATGATG+AGG | + | chr7_1:60966086-60966105 | Msa1028270:CDS | 50.0% |
| AGAGCCAACATCAGGCAACA+TGG | + | chr7_1:60967361-60967380 | Msa1028270:CDS | 50.0% | |
| GAGCCAACATCAGGCAACAT+GGG | + | chr7_1:60967362-60967381 | Msa1028270:CDS | 50.0% | |
| GGCATTTATGGCTGCCATGA+AGG | + | chr7_1:60967394-60967413 | Msa1028270:CDS | 50.0% | |
| CACGGATCCAACGAAAGGAA+TGG | + | chr7_1:60967502-60967521 | Msa1028270:CDS | 50.0% | |
| GATCCAACGAAAGGAATGGG+AGG | + | chr7_1:60967506-60967525 | Msa1028270:CDS | 50.0% | |
| GTTCCTCCCATTCCTTTCGT+TGG | - | chr7_1:60967512-60967531 | None:intergenic | 50.0% | |
| TAGCGACTAGAGCGATGCTA+TGG | + | chr7_1:60967728-60967747 | Msa1028270:intron | 50.0% | |
| AACAGGTCCTGAGATATGGG+AGG | + | chr7_1:60967958-60967977 | Msa1028270:CDS | 50.0% | |
| GTGCTGAATGGTGGTAAACC+TGG | + | chr7_1:60968209-60968228 | Msa1028270:CDS | 50.0% | |
| GGCCTTGAAAGAAGGACTCA+TGG | + | chr7_1:60968543-60968562 | Msa1028270:CDS | 50.0% | |
| CACAGTTGCAGCACTCAGAT+TGG | + | chr7_1:60968734-60968753 | Msa1028270:CDS | 50.0% | |
| CAGCTTCTGTTCGAAGGTCT+TGG | - | chr7_1:60969001-60969020 | None:intergenic | 50.0% | |
| ! | GACAATGCATGCCACTTGGA+TGG | - | chr7_1:60969383-60969402 | None:intergenic | 50.0% |
| CTTGCATTGCAAGTGGGAGG+AGG | + | chr7_1:60965897-60965916 | Msa1028270:five_prime_UTR | 55.0% | |
| !! | CAGACCGGCACTTGCTATGA+TGG | + | chr7_1:60967195-60967214 | Msa1028270:intron | 55.0% |
| ! | GTGATGGGAATAGGTAGCGG+AGG | + | chr7_1:60968007-60968026 | Msa1028270:CDS | 55.0% |
| !! | GGGAATAGGTAGCGGAGGCA+CGG | + | chr7_1:60968012-60968031 | Msa1028270:CDS | 60.0% |
| !! | GGTAGCGGAGGCACGGTTTC+CGG | + | chr7_1:60968019-60968038 | Msa1028270:CDS | 65.0% |
| ! | GTAGCGGAGGCACGGTTTCC+GGG | + | chr7_1:60968020-60968039 | Msa1028270:CDS | 65.0% |
| ! | TAGCGGAGGCACGGTTTCCG+GGG | + | chr7_1:60968021-60968040 | Msa1028270:CDS | 65.0% |
| ! | GGAGGCACGGTTTCCGGGGT+TGG | + | chr7_1:60968025-60968044 | Msa1028270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 60965857 | 60969403 | 60965857 | ID=Msa1028270;Name=Msa1028270 |
| chr7_1 | mRNA | 60965857 | 60969403 | 60965857 | ID=Msa1028270-mRNA-1;Parent=Msa1028270;Name=Msa1028270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=168|1|1|1|1|1|10|354|379 |
| chr7_1 | exon | 60965857 | 60966222 | 60965857 | ID=Msa1028270-mRNA-1:exon:12760;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60966732 | 60966841 | 60966732 | ID=Msa1028270-mRNA-1:exon:12761;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60967198 | 60967255 | 60967198 | ID=Msa1028270-mRNA-1:exon:12762;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60967350 | 60967613 | 60967350 | ID=Msa1028270-mRNA-1:exon:12763;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60967944 | 60968081 | 60967944 | ID=Msa1028270-mRNA-1:exon:12764;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60968179 | 60968230 | 60968179 | ID=Msa1028270-mRNA-1:exon:12765;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60968329 | 60968408 | 60968329 | ID=Msa1028270-mRNA-1:exon:12766;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60968505 | 60968564 | 60968505 | ID=Msa1028270-mRNA-1:exon:12767;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60968711 | 60968791 | 60968711 | ID=Msa1028270-mRNA-1:exon:12768;Parent=Msa1028270-mRNA-1 |
| chr7_1 | exon | 60968951 | 60969403 | 60968951 | ID=Msa1028270-mRNA-1:exon:12769;Parent=Msa1028270-mRNA-1 |
| chr7_1 | five_prime_UTR | 60965857 | 60966024 | 60965857 | ID=Msa1028270-mRNA-1:five_prime_utr;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60966025 | 60966222 | 60966025 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60966732 | 60966841 | 60966732 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60967198 | 60967255 | 60967198 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60967350 | 60967613 | 60967350 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60967944 | 60968081 | 60967944 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60968179 | 60968230 | 60968179 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60968329 | 60968408 | 60968329 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60968505 | 60968564 | 60968505 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60968711 | 60968791 | 60968711 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | CDS | 60968951 | 60969049 | 60968951 | ID=Msa1028270-mRNA-1:cds;Parent=Msa1028270-mRNA-1 |
| chr7_1 | three_prime_UTR | 60969050 | 60969403 | 60969050 | ID=Msa1028270-mRNA-1:three_prime_utr;Parent=Msa1028270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
