AlfalfaGEDB | Msa1225820

M. sativa cultivar zhongmu-4 / Msa1225820

KEGG: -
GO: -
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1225820	KEH31502.1	89.953	846	55	4	1	843	1	819	0.0	1489

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1225820	sp\|O22187\|Y2232_ARATH	44.496	854	421	19	8	843	16	834	0.0	633

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002140	Msa1225820	0.817507	3.182270e-52	-8.615850e-47
Msa0004350	Msa1225820	0.810086	1.372602e-50	-8.615850e-47
Msa0006050	Msa1225820	0.826740	2.298012e-54	-8.615850e-47
Msa0006700	Msa1225820	0.865759	4.677669e-65	-8.615850e-47
Msa0008850	Msa1225820	0.803399	3.551633e-49	-8.615850e-47
Msa0017120	Msa1225820	0.808158	3.553183e-50	-8.615850e-47
Msa0020630	Msa1225820	0.847163	1.375564e-59	-8.615850e-47
Msa0021740	Msa1225820	0.831221	1.887497e-55	-8.615850e-47
Msa0026930	Msa1225820	0.814792	1.286110e-51	-8.615850e-47
Msa0028950	Msa1225820	0.802220	6.222183e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1225820	MtrunA17_Chr4g0053521	83.509	855	120	10	2	843	559	1405	1363
Msa1225820	MtrunA17_Chr4g0053521	76.877	506	108	8	1	500	1	503	727
Msa1225820	MtrunA17_Chr4g0053571	75.618	849	181	15	1	840	1	832	1197
Msa1225820	MtrunA17_Chr4g0053561	67.178	847	199	15	1	840	1	775	1053
Msa1225820	MtrunA17_Chr4g0053591	75.403	496	106	6	350	841	1	484	726
Msa1225820	MtrunA17_Chr6g0468691	48.958	768	347	22	31	775	29	774	641
Msa1225820	MtrunA17_Chr1g0202711	45.261	844	373	25	31	843	47	832	640
Msa1225820	MtrunA17_Chr4g0030441	42.775	872	430	22	4	843	6	840	612
Msa1225820	MtrunA17_Chr2g0318301	42.087	853	442	20	8	837	14	837	603
Msa1225820	MtrunA17_Chr2g0327671	43.038	869	427	22	7	843	15	847	598

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1225820	AT2G23200.1	44.496	854	421	19	8	843	16	834	0.0	633
Msa1225820	AT5G24010.1	46.801	797	375	23	9	786	11	777	0.0	616
Msa1225820	AT5G54380.1	42.129	883	431	24	1	837	1	849	0.0	610
Msa1225820	AT3G46290.1	43.179	843	406	25	31	843	31	830	0.0	588
Msa1225820	AT5G61350.1	43.371	807	388	22	31	788	34	820	0.0	579
Msa1225820	AT5G59700.1	45.069	801	384	22	9	789	8	772	0.0	576
Msa1225820	AT2G21480.1	43.774	795	370	23	22	777	47	803	0.0	570
Msa1225820	AT4G39110.1	42.326	860	401	27	32	838	59	876	0.0	570
Msa1225820	AT1G30570.1	38.498	852	437	23	9	807	12	829	2.02e-177	533
Msa1225820	AT2G39360.1	40.287	767	404	17	31	775	31	765	2.11e-175	527

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Find 175 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTGAGCCAGGGTC+AGG	0.467152	8_1:+91389618	Msa1225820:CDS
AAAATGTAGATCATTTCCTC+AGG	0.533820	8_1:+91388956	Msa1225820:CDS
AAACACCGTCTTAACGTAGG+CGG	0.735114	8_1:+91388691	Msa1225820:CDS
AAAGGTTAGTCTTCCTGTGG+TGG	0.529806	8_1:+91389269	Msa1225820:CDS
AAATCCGATGTGTATTCATT+CGG	0.512738	8_1:+91390080	Msa1225820:CDS
AAATCTATCTGGCATCATCA+AGG	0.581570	8_1:-91390559	None:intergenic
AAATTCAACGTTTCTGTTCC+CGG	0.339246	8_1:+91388406	Msa1225820:CDS
AAATTTGTATTGGTGCTGCT+AGG	0.476389	8_1:+91389838	Msa1225820:CDS
AACAGGTGAACTTAGCTCAG+TGG	0.670917	8_1:+91390162	Msa1225820:CDS
AACGCGAATGATGAGGTTTG+AGG	0.553486	8_1:-91388535	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAAAATCCTTGTAGTT+TGG	-	chr8_1:91388288-91388307	None:intergenic	30.0%
ATTTGTACCAAGATTCAGAA+TGG	-	chr8_1:91388306-91388325	None:intergenic	30.0%
GTGAAGAGATTGAAAAGAAA+TGG	-	chr8_1:91388366-91388385	None:intergenic	30.0%
ATTAGTTAACAGAAGGAAAC+CGG	-	chr8_1:91388428-91388447	None:intergenic	30.0%
CATCGAAATTAGTTAACAGA+AGG	-	chr8_1:91388435-91388454	None:intergenic	30.0%
AATAGAACTCTTTATGCTTC+CGG	+	chr8_1:91388567-91388586	Msa1225820:CDS	30.0%
TAAGTAGATAAGTGTCTGTT+AGG	-	chr8_1:91388634-91388653	None:intergenic	30.0%
AGACACTTATCTACTTATAG+TGG	+	chr8_1:91388637-91388656	Msa1225820:CDS	30.0%
AATCCACAAAATGCTAAGAT+TGG	+	chr8_1:91388781-91388800	Msa1225820:CDS	30.0%
AAAATGTAGATCATTTCCTC+AGG	+	chr8_1:91388956-91388975	Msa1225820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	91388046	91390577	91388046	ID=Msa1225820;Name=Msa1225820
chr8_1	mRNA	91388046	91390577	91388046	ID=Msa1225820-mRNA-1;Parent=Msa1225820;Name=Msa1225820-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|843
chr8_1	exon	91388046	91390577	91388046	ID=Msa1225820-mRNA-1:exon:33326;Parent=Msa1225820-mRNA-1
chr8_1	CDS	91388046	91390577	91388046	ID=Msa1225820-mRNA-1:cds;Parent=Msa1225820-mRNA-1

Gene Sequence

>Msa1225820

ATGGCAGTTCAAAACTCTATCATTTTACTAATTTTTCTTCTTCAATTCTCATCATTATACTTCCCCTCTATCGGATACAACGAACAAGGTTACTTCATCAGTTGCGGATCACAAAACAATGTTACTAATGAAAGTAACAAAGTTTATATAGGAGAATCTCAACATCATATTTACCCTAAAACAAGTTTCAGCAAAAGCTCCATAGAAACAAATCAATCATCCGTTCCTTCATCTCTCTACCAAACTACAAGGATTTTCCATTCTGAATCTTGGTACAAATTCAATACCATCCCAAACAACACCTACATGGTACGTTTCCATTTCTTTTCAATCTCTTCACCAACTAACCTTTCCACTGCAAAATTCAACGTTTCTGTTCCCGGTTTCCTTCTGTTAACTAATTTCGATGCTAAAAACACCACCAACTCTCCTTTAGTAAAAGAGTATTACGTTAAAATCATTCGAAAAAGATTCAAAATCACTTTCACACCTCAAACCTCATCATTCGCGTTTGTTAATGCAATAGAACTCTTTATGCTTCCGGTTCATTTAATCCCTGATTCAGTCGCGCGTTTCAATTACGGTCCTAACAGACACTTATCTACTTATAGTGGCGGTTTACACTCACAACGAGCTTTGGAAACGAAACACCGTCTTAACGTAGGCGGTGATAATGTCACTAGAGAAGCCGATACATTATCAAGAGAATGGTTACGAGATGACAGATACATAACTAATCCACAAAATGCTAAGATTGGTTTCTTTGGAGGTGATATTAAACACGCTGCAAATGATGAATCTGATGGTCCAAATTCAAGTATCATTGGTCCAGATATTGTTTATAAAACTGCCCAAGAGAGTGCAAACGGTTCAAAAGGTTTAAACATAAGTTGGAGTGTTCCTGTGCAAAAAAATGTAGATCATTTCCTCAGGCTTCATTTCTGTGACATTTTTAGTGATCGACAGTCTGGTCTTACAACTTTCAATCTCTTCATTTATGACAGTTATGTTGTATATATCAATAATGACACTAGCCTGTCAATACAGATGCCTTATCATTATGATTTTGTGGTTCAATCCGATGGCTCTGGGATTTTGAAGGTTACAGTTGTACCTATTACTGATACGAACAAATCTGCCAAACCGAATGCATTTTTAAATGGGCTAGAACTAATGGAAGTGATTGAACAATCTAGTGAAATTCCCCCAGATGATATGGATTCAAAGGTTAGTCTTCCTGTGGTGGTGGGTTCGGTTGTTGGAGGTTTAGTTTTGGTTTCGGTTGTGGTGGTTTTGTTTCTTTGGATTAGTAAAATCAGGAAACAAAGGTCCGTTGAGAATTCTGAATGGTTGCCGATTCCAGCAGCCAGAGGAGGGAGTTCTCACAGCAGATTAACTGATGCAACAACAATTCAAGGCTCACCTTTACCTAACATAAACCTTGGATTGAAAATCCCCTTGCTTGATCTTCAATTTGCAACTGATAATTTCGATGCGAAGAGGATAATTGGAAAGGGTGGTTTTGGAATTGTTTATAAGGGAGTTCTCAGGAATGGAGTTAGTGTTGCAGTGAAAAGAAGTGAGCCAGGGTCAGGTCAAGGACTACCTGAATTTCAGACTGAGATAATGGTTTTGTCAAAGATTCGTCATCGACACCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTATGAGATGATACTTGTTTATGAGTACATGGAAAAGGGGACACTTAAAGATAGTTTGTACGGTGCAAATTTGCCTAGTTTCTTGACTTGGAAGCAAAGGCTTGAAATTTGTATTGGTGCTGCTAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGTGGAATCATTCACCGCGATGTGAAATCCACAAACATATTGCTTGATGAGTGTCTTGTAGCTAAAGTTGCTGATTTTGGTCTCTCAAGAACTGGTCCTCTTGATCAGCATTCTTATGTCAGCACAGGTGTTAAGGGAACTTTCGGATATCTCGATCCTGAGTACTTTAGATCACAACAACTCACAGAGAAATCCGATGTGTATTCATTCGGCGTGGTTCTACTTGAAGTTTTGTGTGCAAGGCCAGCCATTGAACCGTCGCTTCCAAGGGAACAGGTGAACTTAGCTCAGTGGGGAATTTTTTGCAAAGATAAAGGGCTATTGGAAGATATCATTGATCCTTCCATCAAGGGACAAATTGATCCAAACTCACTTAGAAAGTTTAGTGAGATAGTTGAAAAATGCTTACAAGATGATGGTTGTGATAGGCCTTCAATGGGCGATGTTTTGTGGGACTTGGAATATTCTTTGCAGCTTCAGAGAGGTGCAATACATAGAGAACCACATGAAGACAGTTCCAACAGTGCTTCTGTATCAATTCAATTGCCCAATGTTCGCCGTTTGCCTTCTCTGTCTACACTGAGTGAAGTGGATGACATGTCTATGTCTATTGGGAGGGTTATGGATGAATCTGATGGTGCAGCACATTCTGTTTTCTCTCAGTTGAACCTTGATGATGCCAGATAG

Protein sequence

>Msa1225820

MAVQNSIILLIFLLQFSSLYFPSIGYNEQGYFISCGSQNNVTNESNKVYIGESQHHIYPKTSFSKSSIETNQSSVPSSLYQTTRIFHSESWYKFNTIPNNTYMVRFHFFSISSPTNLSTAKFNVSVPGFLLLTNFDAKNTTNSPLVKEYYVKIIRKRFKITFTPQTSSFAFVNAIELFMLPVHLIPDSVARFNYGPNRHLSTYSGGLHSQRALETKHRLNVGGDNVTREADTLSREWLRDDRYITNPQNAKIGFFGGDIKHAANDESDGPNSSIIGPDIVYKTAQESANGSKGLNISWSVPVQKNVDHFLRLHFCDIFSDRQSGLTTFNLFIYDSYVVYINNDTSLSIQMPYHYDFVVQSDGSGILKVTVVPITDTNKSAKPNAFLNGLELMEVIEQSSEIPPDDMDSKVSLPVVVGSVVGGLVLVSVVVVLFLWISKIRKQRSVENSEWLPIPAARGGSSHSRLTDATTIQGSPLPNINLGLKIPLLDLQFATDNFDAKRIIGKGGFGIVYKGVLRNGVSVAVKRSEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERYEMILVYEYMEKGTLKDSLYGANLPSFLTWKQRLEICIGAARGLHYLHKGAAGGIIHRDVKSTNILLDECLVAKVADFGLSRTGPLDQHSYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARPAIEPSLPREQVNLAQWGIFCKDKGLLEDIIDPSIKGQIDPNSLRKFSEIVEKCLQDDGCDRPSMGDVLWDLEYSLQLQRGAIHREPHEDSSNSASVSIQLPNVRRLPSLSTLSEVDDMSMSIGRVMDESDGAAHSVFSQLNLDDAR*