Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112370 | AQZ26214.1 | 99.474 | 380 | 0 | 2 | 1 | 379 | 1 | 379 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112370 | sp|Q1KLZ2|CAS1_MALDO | 83.377 | 379 | 58 | 1 | 1 | 379 | 1 | 374 | 0.0 | 631 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112370 | A0A1U9XPL9 | 99.474 | 380 | 0 | 2 | 1 | 379 | 1 | 379 | 0.0 | 771 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa1112370 | -0.805468 | 1.315648e-49 | -8.615850e-47 |
| Msa0063000 | Msa1112370 | 0.803787 | 2.950190e-49 | -8.615850e-47 |
| Msa0063060 | Msa1112370 | 0.807686 | 4.477150e-50 | -8.615850e-47 |
| Msa0078660 | Msa1112370 | 0.820316 | 7.316259e-53 | -8.615850e-47 |
| Msa0649800 | Msa1112370 | 0.803873 | 2.831922e-49 | -8.615850e-47 |
| Msa0658570 | Msa1112370 | 0.820913 | 5.335480e-53 | -8.615850e-47 |
| Msa0691860 | Msa1112370 | 0.814135 | 1.797012e-51 | -8.615850e-47 |
| Msa0716750 | Msa1112370 | 0.813282 | 2.769775e-51 | -8.615850e-47 |
| Msa0718470 | Msa1112370 | 0.802616 | 5.154397e-49 | -8.615850e-47 |
| Msa0796960 | Msa1112370 | 0.802433 | 5.624461e-49 | -8.615850e-47 |
| Msa0801100 | Msa1112370 | 0.807894 | 4.043658e-50 | -8.615850e-47 |
| Msa0809740 | Msa1112370 | 0.801915 | 7.186029e-49 | -8.615850e-47 |
| Msa0126380 | Msa1112370 | 0.830031 | 3.691443e-55 | -8.615850e-47 |
| Msa0223380 | Msa1112370 | 0.801797 | 7.600814e-49 | -8.615850e-47 |
| Msa0365490 | Msa1112370 | 0.802625 | 5.133334e-49 | -8.615850e-47 |
| Msa0371180 | Msa1112370 | 0.853185 | 2.823870e-61 | -8.615850e-47 |
| Msa0377530 | Msa1112370 | 0.805993 | 1.020575e-49 | -8.615850e-47 |
| Msa0388030 | Msa1112370 | -0.820422 | 6.918744e-53 | -8.615850e-47 |
| Msa0422500 | Msa1112370 | 0.876074 | 1.863343e-68 | -8.615850e-47 |
| Msa0448550 | Msa1112370 | -0.810586 | 1.070594e-50 | -8.615850e-47 |
| Msa0450350 | Msa1112370 | 0.866673 | 2.401416e-65 | -8.615850e-47 |
| Msa0454880 | Msa1112370 | 0.802129 | 6.494335e-49 | -8.615850e-47 |
| Msa0464710 | Msa1112370 | 0.802940 | 4.418906e-49 | -8.615850e-47 |
| Msa0473240 | Msa1112370 | 0.827128 | 1.856271e-54 | -8.615850e-47 |
| Msa1028270 | Msa1112370 | 0.907677 | 3.913843e-81 | -8.615850e-47 |
| Msa1066870 | Msa1112370 | 0.843992 | 9.958262e-59 | -8.615850e-47 |
| Msa0266000 | Msa1112370 | -0.830318 | 3.141207e-55 | -8.615850e-47 |
| Msa0299200 | Msa1112370 | 0.806607 | 7.579140e-50 | -8.615850e-47 |
| Msa0335040 | Msa1112370 | 0.807876 | 4.080175e-50 | -8.615850e-47 |
| Msa1112370 | Msa1171730 | 0.801396 | 9.185800e-49 | -8.615850e-47 |
| Msa1112370 | Msa1195750 | 0.804554 | 2.043318e-49 | -8.615850e-47 |
| Msa1112370 | Msa1229600 | 0.811003 | 8.698197e-51 | -8.615850e-47 |
| Msa1112370 | Msa1247030 | 0.810319 | 1.223064e-50 | -8.615850e-47 |
| Msa1112370 | Msa1247920 | 0.803771 | 2.972953e-49 | -8.615850e-47 |
| Msa1112370 | Msa1300090 | 0.814280 | 1.669217e-51 | -8.615850e-47 |
| Msa1112370 | Msa1309880 | 0.800529 | 1.380659e-48 | -8.615850e-47 |
| Msa1112370 | Msa1310210 | 0.805410 | 1.352963e-49 | -8.615850e-47 |
| Msa1112370 | Msa1376890 | 0.821662 | 3.583698e-53 | -8.615850e-47 |
| Msa1112370 | Msa1390120 | 0.800551 | 1.366532e-48 | -8.615850e-47 |
| Msa1112370 | Msa1393410 | 0.816277 | 6.009083e-52 | -8.615850e-47 |
| Msa1112370 | Msa1395530 | 0.809090 | 2.247219e-50 | -8.615850e-47 |
| Msa1112370 | Msa1435420 | 0.815414 | 9.357720e-52 | -8.615850e-47 |
| Msa0492880 | Msa1112370 | 0.807521 | 4.854589e-50 | -8.615850e-47 |
| Msa0511250 | Msa1112370 | 0.873634 | 1.263410e-67 | -8.615850e-47 |
| Msa0517490 | Msa1112370 | 0.821689 | 3.533105e-53 | -8.615850e-47 |
| Msa0567020 | Msa1112370 | 0.814235 | 1.708159e-51 | -8.615850e-47 |
| Msa0883450 | Msa1112370 | 0.807002 | 6.252540e-50 | -8.615850e-47 |
| Msa0968730 | Msa1112370 | 0.814034 | 1.892382e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112370 | MtrunA17_Chr7g0248021 | 98.688 | 381 | 2 | 2 | 1 | 379 | 1 | 380 | 0.0 | 767 |
| Msa1112370 | MtrunA17_Chr4g0045721 | 56.772 | 347 | 148 | 1 | 29 | 375 | 18 | 362 | 5.69e-144 | 412 |
| Msa1112370 | MtrunA17_Chr1g0191041 | 62.975 | 316 | 117 | 0 | 58 | 373 | 6 | 321 | 3.83e-137 | 394 |
| Msa1112370 | MtrunA17_Chr5g0394491 | 62.025 | 316 | 120 | 0 | 58 | 373 | 6 | 321 | 6.13e-137 | 393 |
| Msa1112370 | MtrunA17_Chr4g0045781 | 61.059 | 321 | 125 | 0 | 55 | 375 | 61 | 381 | 1.03e-136 | 395 |
| Msa1112370 | MtrunA17_Chr1g0191051 | 61.465 | 314 | 121 | 0 | 60 | 373 | 7 | 320 | 2.32e-135 | 389 |
| Msa1112370 | MtrunA17_Chr1g0205381 | 61.709 | 316 | 121 | 0 | 58 | 373 | 6 | 321 | 2.48e-134 | 387 |
| Msa1112370 | MtrunA17_Chr4g0045771 | 52.342 | 363 | 162 | 3 | 13 | 375 | 2 | 353 | 9.57e-134 | 386 |
| Msa1112370 | MtrunA17_Chr1g0191061 | 53.371 | 356 | 120 | 2 | 64 | 373 | 25 | 380 | 8.96e-122 | 357 |
| Msa1112370 | MtrunA17_Chr7g0254401 | 49.162 | 358 | 169 | 2 | 16 | 373 | 24 | 368 | 1.30e-115 | 340 |
| Msa1112370 | MtrunA17_Chr1g0191071 | 56.015 | 266 | 112 | 1 | 108 | 373 | 1 | 261 | 4.47e-97 | 290 |
| Msa1112370 | MtrunA17_Chr5g0446431 | 29.226 | 349 | 188 | 6 | 68 | 359 | 52 | 398 | 2.82e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112370 | AT3G61440.1 | 80.170 | 353 | 65 | 1 | 27 | 379 | 21 | 368 | 0.0 | 575 |
| Msa1112370 | AT3G61440.4 | 79.125 | 297 | 57 | 1 | 27 | 323 | 21 | 312 | 1.83e-169 | 476 |
| Msa1112370 | AT3G61440.2 | 84.559 | 272 | 42 | 0 | 108 | 379 | 1 | 272 | 2.73e-166 | 466 |
| Msa1112370 | AT3G61440.3 | 85.020 | 247 | 37 | 0 | 133 | 379 | 1 | 247 | 3.65e-151 | 427 |
| Msa1112370 | AT3G59760.1 | 60.870 | 322 | 126 | 0 | 57 | 378 | 110 | 431 | 8.68e-140 | 405 |
| Msa1112370 | AT3G59760.3 | 61.129 | 319 | 124 | 0 | 57 | 375 | 110 | 428 | 8.95e-140 | 405 |
| Msa1112370 | AT4G14880.5 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 1.05e-136 | 393 |
| Msa1112370 | AT4G14880.3 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 1.05e-136 | 393 |
| Msa1112370 | AT4G14880.4 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 1.05e-136 | 393 |
| Msa1112370 | AT4G14880.2 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 1.05e-136 | 393 |
| Msa1112370 | AT4G14880.1 | 61.076 | 316 | 123 | 0 | 58 | 373 | 3 | 318 | 1.05e-136 | 393 |
| Msa1112370 | AT2G43750.1 | 59.561 | 319 | 129 | 0 | 57 | 375 | 72 | 390 | 5.99e-136 | 394 |
| Msa1112370 | AT2G43750.2 | 59.561 | 319 | 129 | 0 | 57 | 375 | 72 | 390 | 5.99e-136 | 394 |
| Msa1112370 | AT3G59760.2 | 60.690 | 290 | 114 | 0 | 57 | 346 | 110 | 399 | 1.11e-123 | 364 |
| Msa1112370 | AT3G04940.1 | 56.646 | 316 | 137 | 0 | 58 | 373 | 6 | 321 | 5.03e-123 | 358 |
| Msa1112370 | AT3G04940.2 | 56.646 | 316 | 137 | 0 | 58 | 373 | 6 | 321 | 5.03e-123 | 358 |
| Msa1112370 | AT5G28020.2 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.05e-116 | 341 |
| Msa1112370 | AT5G28020.4 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.05e-116 | 341 |
| Msa1112370 | AT5G28020.1 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.05e-116 | 341 |
| Msa1112370 | AT5G28020.3 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.05e-116 | 341 |
| Msa1112370 | AT5G28020.6 | 56.369 | 314 | 137 | 0 | 60 | 373 | 7 | 320 | 3.05e-116 | 341 |
| Msa1112370 | AT3G22460.1 | 60.150 | 266 | 86 | 1 | 108 | 373 | 1 | 246 | 3.15e-112 | 328 |
| Msa1112370 | AT5G28030.1 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.16e-112 | 330 |
| Msa1112370 | AT5G28030.4 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.16e-112 | 330 |
| Msa1112370 | AT5G28030.5 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.16e-112 | 330 |
| Msa1112370 | AT5G28030.2 | 55.414 | 314 | 140 | 0 | 60 | 373 | 7 | 320 | 5.16e-112 | 330 |
| Msa1112370 | AT3G03630.1 | 54.114 | 316 | 135 | 1 | 59 | 374 | 98 | 403 | 1.91e-110 | 329 |
| Msa1112370 | AT5G28030.3 | 53.968 | 252 | 116 | 0 | 60 | 311 | 7 | 258 | 1.02e-86 | 263 |
| Msa1112370 | AT3G22460.2 | 62.088 | 182 | 69 | 0 | 59 | 240 | 7 | 188 | 2.57e-81 | 247 |
| Msa1112370 | AT5G28020.5 | 54.701 | 234 | 106 | 0 | 140 | 373 | 1 | 234 | 2.33e-78 | 241 |
| Msa1112370 | AT1G55880.1 | 28.906 | 384 | 209 | 9 | 41 | 365 | 21 | 399 | 2.38e-38 | 142 |
| Msa1112370 | AT1G55880.2 | 29.259 | 270 | 149 | 4 | 41 | 269 | 21 | 289 | 1.13e-31 | 123 |
Find 121 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATCAGTTTGGCATTTA+TGG | 0.111575 | 7_3:+58337697 | Msa1112370:CDS |
| GAAGAAGAAGAAGGAGAATT+TGG | 0.156763 | 7_3:-58336299 | None:intergenic |
| GAGAAAATCACCTTAACATT+AGG | 0.229682 | 7_3:-58338362 | None:intergenic |
| GGTAGCGGAGGCACGGTTTC+CGG | 0.231220 | 7_3:+58338311 | Msa1112370:CDS |
| TTTCAATCATATTAGATATA+TGG | 0.257432 | 7_3:+58338456 | Msa1112370:intron |
| GTAGCGGAGGCACGGTTTCC+GGG | 0.287571 | 7_3:+58338312 | Msa1112370:CDS |
| CAGACTGTTCATCCAAGTTT+CGG | 0.294327 | 7_3:+58339250 | Msa1112370:intron |
| AGAAAATCACCTTAACATTA+GGG | 0.297633 | 7_3:-58338361 | None:intergenic |
| TACTGCTTTGTAATGTTGTT+TGG | 0.307138 | 7_3:+58339522 | Msa1112370:three_prime_UTR |
| AACCTTACCTTAGTATTGGC+TGG | 0.308983 | 7_3:-58337914 | None:intergenic |
| AAACAACAGGTCCTGAGATA+TGG | 0.318320 | 7_3:+58338246 | Msa1112370:CDS |
| CAGCTTCTGTCCGAAGGTCT+TGG | 0.322978 | 7_3:-58339300 | None:intergenic |
| AGGGTTTGTATGAGAGCATT+TGG | 0.332544 | 7_3:+58337779 | Msa1112370:CDS |
| TCGATTCAACTAACCTTTCC+AGG | 0.333739 | 7_3:-58337562 | None:intergenic |
| AGACTGTTCATCCAAGTTTC+GGG | 0.334413 | 7_3:+58339251 | Msa1112370:intron |
| ATGTAAATTGTGTCTTCTTT+TGG | 0.342124 | 7_3:+58339620 | Msa1112370:three_prime_UTR |
| TTACATCATACTCACAATTT+CGG | 0.345815 | 7_3:-58339603 | None:intergenic |
| AGACATTAATCGACCGAAAC+TGG | 0.354464 | 7_3:-58339334 | None:intergenic |
| GACATATTTGTGATGGGAAT+AGG | 0.357383 | 7_3:+58338290 | Msa1112370:CDS |
| ACAGGTCCTCATCAAATAAC+TGG | 0.359927 | 7_3:+58338617 | Msa1112370:intron |
| AATGGGAGGAACAGTGAAAA+AGG | 0.372245 | 7_3:+58337835 | Msa1112370:CDS |
| TGGATTCAAACCAGACATAT+TGG | 0.377923 | 7_3:+58338649 | Msa1112370:CDS |
| AATGCAAGAATCGAGAAATT+AGG | 0.379372 | 7_3:-58336189 | None:intergenic |
| TACCATGAGTCCTTCTTTCA+AGG | 0.380319 | 7_3:-58338836 | None:intergenic |
| TGTTGCAGCATAAAAGCATT+TGG | 0.385420 | 7_3:-58337881 | None:intergenic |
| AACCATCTTATATCCCTTCA+TGG | 0.389444 | 7_3:-58337723 | None:intergenic |
| TGAAAACATGCAGCCAGTTT+CGG | 0.397413 | 7_3:+58339321 | Msa1112370:CDS |
| GTTCCTCCCATTCCTTTCGT+TGG | 0.398796 | 7_3:-58337824 | None:intergenic |
| CTTTCCAAGCTTGTGTAAGA+TGG | 0.401441 | 7_3:-58337755 | None:intergenic |
| CCTCATCAAATAACTGGAAA+TGG | 0.407277 | 7_3:+58338623 | Msa1112370:CDS |
| ATCAATCTCCTCATCATCAT+TGG | 0.416899 | 7_3:-58336410 | None:intergenic |
| GGCATTTATGGCTGCCATGA+AGG | 0.421016 | 7_3:+58337709 | Msa1112370:CDS |
| ATCACAAAACCCTAATGTTA+AGG | 0.422500 | 7_3:+58338352 | Msa1112370:CDS |
| CTTACACAAGCTTGGAAAGA+AGG | 0.427704 | 7_3:+58337759 | Msa1112370:CDS |
| GGAGGCACGGTTTCCGGGGT+TGG | 0.433673 | 7_3:+58338317 | Msa1112370:CDS |
| TGTTAACCTTACCTTAGTAT+TGG | 0.438994 | 7_3:-58337918 | None:intergenic |
| CAGACCGGCACTTGCTATGA+TGG | 0.446594 | 7_3:+58337510 | Msa1112370:intron |
| CATATTGGACATGGATGTAA+TGG | 0.448326 | 7_3:+58338664 | Msa1112370:CDS |
| AGGCAACATGGGAATCAGTT+TGG | 0.448530 | 7_3:+58337688 | Msa1112370:CDS |
| ACATCCATGTCCAATATGTC+TGG | 0.450862 | 7_3:-58338659 | None:intergenic |
| TACCTTAGTATTGGCTGGGT+TGG | 0.454890 | 7_3:-58337909 | None:intergenic |
| CTGTCTTGTTCCAAGACCTT+CGG | 0.456322 | 7_3:+58339290 | Msa1112370:CDS |
| ACAATGCATGCCACTTGGTT+GGG | 0.456923 | 7_3:-58339681 | None:intergenic |
| TTCTAGGTTGGTATATCGTC+CGG | 0.458734 | 7_3:+58338993 | Msa1112370:intron |
| AGCTTTGTTGTGGAGTTACA+TGG | 0.465048 | 7_3:+58339382 | Msa1112370:three_prime_UTR |
| CAAATAACTGGAAATGGTGT+TGG | 0.466995 | 7_3:+58338629 | Msa1112370:CDS |
| ACCTTACCTTAGTATTGGCT+GGG | 0.467817 | 7_3:-58337913 | None:intergenic |
| TTCCAACCCAGCCAATACTA+AGG | 0.471629 | 7_3:+58337907 | Msa1112370:CDS |
| ATTCCCATGTTGCCTGATGT+TGG | 0.472301 | 7_3:-58337680 | None:intergenic |
| CACAGTTGCAGCACTCAGAT+TGG | 0.473290 | 7_3:+58339022 | Msa1112370:CDS |
| TTGGTACCAGGAAGATCTTT+AGG | 0.474343 | 7_3:-58336494 | None:intergenic |
| AACAACAGGTCCTGAGATAT+GGG | 0.481398 | 7_3:+58338247 | Msa1112370:CDS |
| AAACAAAGGCAAACTTATAG+TGG | 0.482939 | 7_3:+58339058 | Msa1112370:CDS |
| GATTTGCCTAAAGATCTTCC+TGG | 0.483439 | 7_3:+58336488 | Msa1112370:CDS |
| GATATTACAGTCTATATAAG+TGG | 0.493514 | 7_3:+58336244 | Msa1112370:five_prime_UTR |
| AGGTATCGTTCCCCGAAACT+TGG | 0.499828 | 7_3:-58339262 | None:intergenic |
| CTCGATTCTTGCATTGCAAG+TGG | 0.500392 | 7_3:+58336197 | Msa1112370:five_prime_UTR |
| TGCTGCAACTGTGTTTGCTC+CGG | 0.501786 | 7_3:-58339012 | None:intergenic |
| TTTGTATCCTCCCATATCTC+AGG | 0.504891 | 7_3:-58338257 | None:intergenic |
| TCCTCATCATCATTGGATGC+TGG | 0.506377 | 7_3:-58336403 | None:intergenic |
| GCATTTATGGCTGCCATGAA+GGG | 0.510121 | 7_3:+58337710 | Msa1112370:CDS |
| ACGGATCCAACGAAAGGAAT+GGG | 0.510673 | 7_3:+58337818 | Msa1112370:CDS |
| TGCATGCCACTTGGTTGGGT+CGG | 0.511334 | 7_3:-58339677 | None:intergenic |
| GGTTAACATGGCTAGGACAT+TGG | 0.515821 | 7_3:+58338813 | Msa1112370:CDS |
| TGGAGCTGAATTGATTCTCA+CGG | 0.517514 | 7_3:+58337799 | Msa1112370:CDS |
| GACAATGCATGCCACTTGGT+TGG | 0.517868 | 7_3:-58339682 | None:intergenic |
| CAGTGAAGATGCGGTTAACA+TGG | 0.519950 | 7_3:+58338801 | Msa1112370:CDS |
| TATGCCATCTTACACAAGCT+TGG | 0.524193 | 7_3:+58337751 | Msa1112370:CDS |
| TTACACAAGCTTGGAAAGAA+GGG | 0.524356 | 7_3:+58337760 | Msa1112370:CDS |
| GAGATATGGGAGGATACAAA+TGG | 0.524396 | 7_3:+58338260 | Msa1112370:CDS |
| CACGGATCCAACGAAAGGAA+TGG | 0.526798 | 7_3:+58337817 | Msa1112370:CDS |
| CATTTGGTGTGGATTCCAAA+AGG | 0.529158 | 7_3:-58337865 | None:intergenic |
| ATTCTGATAGAGCCAACATC+AGG | 0.532002 | 7_3:+58337668 | Msa1112370:CDS |
| CTTGCATTGCAAGTGGGAGG+AGG | 0.533423 | 7_3:+58336204 | Msa1112370:five_prime_UTR |
| TGCTAATGATGATGAAGAAG+AGG | 0.542881 | 7_3:-58336372 | None:intergenic |
| AGGACATTGGCCTTGAAAGA+AGG | 0.544017 | 7_3:+58338826 | Msa1112370:CDS |
| GTGCTGAATGGTGGTAAACC+TGG | 0.548416 | 7_3:+58338501 | Msa1112370:CDS |
| TATCTTAACAAAGTAACTGA+AGG | 0.556227 | 7_3:+58337072 | Msa1112370:CDS |
| TGCCATGAAGGGATATAAGA+TGG | 0.557496 | 7_3:+58337721 | Msa1112370:CDS |
| TTCAGCACATTACTTTCAGA+TGG | 0.557589 | 7_3:-58338486 | None:intergenic |
| TCTAGTAGTATGAGAACTCA+TGG | 0.557642 | 7_3:-58339358 | None:intergenic |
| CAGGTGCATTTCGAAACAAC+AGG | 0.558100 | 7_3:+58338233 | Msa1112370:intron |
| AGAGCCAACATCAGGCAACA+TGG | 0.563901 | 7_3:+58337676 | Msa1112370:CDS |
| CTACTGCTAGCATCAAAGAC+AGG | 0.569459 | 7_3:+58337136 | Msa1112370:CDS |
| TCGATTCTTGCATTGCAAGT+GGG | 0.575714 | 7_3:+58336198 | Msa1112370:five_prime_UTR |
| GAATTTGATAACTCCTGGAA+AGG | 0.576005 | 7_3:+58337549 | Msa1112370:CDS |
| ATATTACAGTCTATATAAGT+GGG | 0.576662 | 7_3:+58336245 | Msa1112370:five_prime_UTR |
| CAGCATAAAAGCATTTGGTG+TGG | 0.576924 | 7_3:-58337876 | None:intergenic |
| GGCCTTGAAAGAAGGACTCA+TGG | 0.577659 | 7_3:+58338834 | Msa1112370:CDS |
| ACAAGTTGACATATTTGTGA+TGG | 0.584399 | 7_3:+58338283 | Msa1112370:CDS |
| CCATTTCCAGTTATTTGATG+AGG | 0.589789 | 7_3:-58338623 | None:intergenic |
| CAAGTTGACATATTTGTGAT+GGG | 0.592268 | 7_3:+58338284 | Msa1112370:CDS |
| GGGAATAGGTAGCGGAGGCA+CGG | 0.600122 | 7_3:+58338304 | Msa1112370:CDS |
| GCTAATCTTCCTGAAAACAA+AGG | 0.600165 | 7_3:+58339044 | Msa1112370:CDS |
| ATTTGACAATGCATGCCACT+TGG | 0.601166 | 7_3:-58339686 | None:intergenic |
| AACAAAGTAACTGAAGGATG+TGG | 0.601957 | 7_3:+58337078 | Msa1112370:CDS |
| ACTACTAGAAAGCTTTGTTG+TGG | 0.603700 | 7_3:+58339372 | Msa1112370:three_prime_UTR |
| TCTTCCATCATAGCAAGTGC+CGG | 0.604090 | 7_3:-58337514 | None:intergenic |
| GCCAGCATCCAATGATGATG+AGG | 0.606622 | 7_3:+58336402 | Msa1112370:CDS |
| CAAACCAGACATATTGGACA+TGG | 0.607682 | 7_3:+58338655 | Msa1112370:CDS |
| CTGTCTTTGATGCTAGCAGT+AGG | 0.608366 | 7_3:-58337135 | None:intergenic |
| ATGAAGAAGAGGTTCTCTTG+AGG | 0.609055 | 7_3:-58336361 | None:intergenic |
| ATCATATTAGATATATGGAG+TGG | 0.610130 | 7_3:+58338461 | Msa1112370:intron |
| GAGCCAACATCAGGCAACAT+GGG | 0.610601 | 7_3:+58337677 | Msa1112370:CDS |
| TCTGAAAGTAATGTGCTGAA+TGG | 0.619543 | 7_3:+58338489 | Msa1112370:CDS |
| TTTGTGATGGGAATAGGTAG+CGG | 0.619890 | 7_3:+58338296 | Msa1112370:CDS |
| AAAAGATGAAGAATCAACAC+TGG | 0.622283 | 7_3:-58336450 | None:intergenic |
| AAGATGCGGTTAACATGGCT+AGG | 0.624967 | 7_3:+58338806 | Msa1112370:CDS |
| ATTCTTGCATTGCAAGTGGG+AGG | 0.626591 | 7_3:+58336201 | Msa1112370:five_prime_UTR |
| GTAGGTTAGCAGTGAAGATG+CGG | 0.633557 | 7_3:+58338792 | Msa1112370:intron |
| ATTCTCACGGATCCAACGAA+AGG | 0.634433 | 7_3:+58337812 | Msa1112370:CDS |
| TTTAAGATATTGTCCAACCC+CGG | 0.638530 | 7_3:-58338330 | None:intergenic |
| CTTGGAACAAGACAGATGAC+AGG | 0.646085 | 7_3:-58339282 | None:intergenic |
| GCAAGAATCGAGAAATTAGG+TGG | 0.649332 | 7_3:-58336186 | None:intergenic |
| GACTGTTCATCCAAGTTTCG+GGG | 0.652256 | 7_3:+58339252 | Msa1112370:intron |
| GAAAGTAATGTGCTGAATGG+TGG | 0.674745 | 7_3:+58338492 | Msa1112370:CDS |
| GTGATGGGAATAGGTAGCGG+AGG | 0.681582 | 7_3:+58338299 | Msa1112370:CDS |
| ACTTTGTTAAGATAAACAAG+TGG | 0.682462 | 7_3:-58337063 | None:intergenic |
| TTAAAGCCGACCCAACCAAG+TGG | 0.686606 | 7_3:+58339671 | Msa1112370:three_prime_UTR |
| AACAGGTCCTGAGATATGGG+AGG | 0.695778 | 7_3:+58338250 | Msa1112370:CDS |
| GATCCAACGAAAGGAATGGG+AGG | 0.697448 | 7_3:+58337821 | Msa1112370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATTCTTGAATTTT+GGG | - | chr7_3:58336705-58336724 | None:intergenic | 10.0% |
| !!! | AAAAAAAAATTCTTGAATTT+TGG | - | chr7_3:58336706-58336725 | None:intergenic | 10.0% |
| !! | TATGATTGAAAAAATTTCAA+AGG | - | chr7_3:58338447-58338466 | None:intergenic | 15.0% |
| !! | TTTCAATCATATTAGATATA+TGG | + | chr7_3:58338456-58338475 | Msa1112370:intron | 15.0% |
| !! | TTACTTGTAATTCAATATTA+AGG | - | chr7_3:58338937-58338956 | None:intergenic | 15.0% |
| !!! | TATTTTCTTTGAATTTTTCT+AGG | + | chr7_3:58338977-58338996 | Msa1112370:intron | 15.0% |
| !! | ATATTACAGTCTATATAAGT+GGG | + | chr7_3:58336245-58336264 | Msa1112370:five_prime_UTR | 20.0% |
| !! | AATCATTAGATGTATACAAA+AGG | + | chr7_3:58336804-58336823 | Msa1112370:intron | 20.0% |
| !! | CATTGAATAAGAGAAAAAAT+TGG | - | chr7_3:58336997-58337016 | None:intergenic | 20.0% |
| !!! | CAATTTATTTTTCAGCTTAT+TGG | + | chr7_3:58337033-58337052 | Msa1112370:intron | 20.0% |
| !!! | AAAGGAATTTGAAATATAGA+GGG | - | chr7_3:58337172-58337191 | None:intergenic | 20.0% |
| !!! | AAAAGGAATTTGAAATATAG+AGG | - | chr7_3:58337173-58337192 | None:intergenic | 20.0% |
| !! | ATACATAACTTACGTTAAAA+TGG | + | chr7_3:58338205-58338224 | Msa1112370:intron | 20.0% |
| !! | TACATAACTTACGTTAAAAT+GGG | + | chr7_3:58338206-58338225 | Msa1112370:intron | 20.0% |
| !! | GTAATATGAATTGTAATCTT+AGG | - | chr7_3:58338387-58338406 | None:intergenic | 20.0% |
| !! | AGATTATGATAAAATGAAAG+AGG | - | chr7_3:58339132-58339151 | None:intergenic | 20.0% |
| ! | GATATTACAGTCTATATAAG+TGG | + | chr7_3:58336244-58336263 | Msa1112370:five_prime_UTR | 25.0% |
| !!! | TGAAACATGTTTTTTGATGT+TGG | - | chr7_3:58336516-58336535 | None:intergenic | 25.0% |
| ! | ATAGTACTTTGTTCCTTAAT+TGG | + | chr7_3:58336576-58336595 | Msa1112370:intron | 25.0% |
| !! | AGTTGGATAGAGAAATATTT+TGG | - | chr7_3:58336676-58336695 | None:intergenic | 25.0% |
| !!! | TCAGTTCACTTTTTATCAAA+AGG | + | chr7_3:58336876-58336895 | Msa1112370:intron | 25.0% |
| ! | AATGTTTGTTCTTCAAACTT+TGG | - | chr7_3:58336904-58336923 | None:intergenic | 25.0% |
| !!! | TTATTTTTCAGCTTATTGGT+AGG | + | chr7_3:58337037-58337056 | Msa1112370:intron | 25.0% |
| ! | ACTTTGTTAAGATAAACAAG+TGG | - | chr7_3:58337066-58337085 | None:intergenic | 25.0% |
| ! | TATCTTAACAAAGTAACTGA+AGG | + | chr7_3:58337072-58337091 | Msa1112370:CDS | 25.0% |
| !! | AAGGAATTTGAAATATAGAG+GGG | - | chr7_3:58337171-58337190 | None:intergenic | 25.0% |
| !! | TTTACTTGATTGGTCAAATT+CGG | - | chr7_3:58337211-58337230 | None:intergenic | 25.0% |
| ! | ATTCATGTGATTTACTTGAT+TGG | - | chr7_3:58337221-58337240 | None:intergenic | 25.0% |
| ! | AATAATCGATGCAATTTGAA+AGG | + | chr7_3:58337390-58337409 | Msa1112370:intron | 25.0% |
| ! | TACAAGAAAAAATCTCAAGA+AGG | + | chr7_3:58337425-58337444 | Msa1112370:intron | 25.0% |
| !! | AAAAAGAATTTGATAACTCC+TGG | + | chr7_3:58337544-58337563 | Msa1112370:CDS | 25.0% |
| ! | TACTATTTATGTTCGAAACA+GGG | + | chr7_3:58337954-58337973 | Msa1112370:intron | 25.0% |
| ! | AGAAAATCACCTTAACATTA+GGG | - | chr7_3:58338364-58338383 | None:intergenic | 25.0% |
| ! | ATCATATTAGATATATGGAG+TGG | + | chr7_3:58338461-58338480 | Msa1112370:intron | 25.0% |
| ! | ATATACATGTACTTACTTCT+AGG | - | chr7_3:58338697-58338716 | None:intergenic | 25.0% |
| ! | CAATATTAAGGTGAAATTCA+TGG | - | chr7_3:58338925-58338944 | None:intergenic | 25.0% |
| !! | TTCTTTGAATTTTTCTAGGT+TGG | + | chr7_3:58338981-58339000 | Msa1112370:intron | 25.0% |
| ! | TTACATCATACTCACAATTT+CGG | - | chr7_3:58339606-58339625 | None:intergenic | 25.0% |
| !! | ATGTAAATTGTGTCTTCTTT+TGG | + | chr7_3:58339620-58339639 | Msa1112370:three_prime_UTR | 25.0% |
| AATGCAAGAATCGAGAAATT+AGG | - | chr7_3:58336192-58336211 | None:intergenic | 30.0% | |
| TTCTTCTTCTTCTTCTTCAA+TGG | + | chr7_3:58336322-58336341 | Msa1112370:exon | 30.0% | |
| AAAAGATGAAGAATCAACAC+TGG | - | chr7_3:58336453-58336472 | None:intergenic | 30.0% | |
| CATCAAAAAACATGTTTCAC+AGG | + | chr7_3:58336517-58336536 | Msa1112370:CDS | 30.0% | |
| !! | TGAATTTTGGGTAATGAAGT+TGG | - | chr7_3:58336693-58336712 | None:intergenic | 30.0% |
| ! | AGGAATTTGAAATATAGAGG+GGG | - | chr7_3:58337170-58337189 | None:intergenic | 30.0% |
| ! | GGTCAAATTTAAAGCACAAA+AGG | - | chr7_3:58337190-58337209 | None:intergenic | 30.0% |
| ATGTAAACAACGAGCAAAAT+TGG | - | chr7_3:58337602-58337621 | None:intergenic | 30.0% | |
| TTCGTGTTTGTGTTAATTGA+TGG | + | chr7_3:58337637-58337656 | Msa1112370:intron | 30.0% | |
| TGTTAACCTTACCTTAGTAT+TGG | - | chr7_3:58337921-58337940 | None:intergenic | 30.0% | |
| GTACTATTTATGTTCGAAAC+AGG | + | chr7_3:58337953-58337972 | Msa1112370:intron | 30.0% | |
| TTGTTAGATAGTAGCTATGA+CGG | + | chr7_3:58337977-58337996 | Msa1112370:intron | 30.0% | |
| GGATCGTAAAAAATAGTAGT+TGG | - | chr7_3:58338107-58338126 | None:intergenic | 30.0% | |
| TTACGTTAAAATGGGAAAAC+AGG | + | chr7_3:58338214-58338233 | Msa1112370:intron | 30.0% | |
| ! | ACAAGTTGACATATTTGTGA+TGG | + | chr7_3:58338283-58338302 | Msa1112370:CDS | 30.0% |
| ! | CAAGTTGACATATTTGTGAT+GGG | + | chr7_3:58338284-58338303 | Msa1112370:CDS | 30.0% |
| ATCACAAAACCCTAATGTTA+AGG | + | chr7_3:58338352-58338371 | Msa1112370:CDS | 30.0% | |
| GAGAAAATCACCTTAACATT+AGG | - | chr7_3:58338365-58338384 | None:intergenic | 30.0% | |
| !!! | ATAAGTTTGCCTTTGTTTTC+AGG | - | chr7_3:58339056-58339075 | None:intergenic | 30.0% |
| AAACAAAGGCAAACTTATAG+TGG | + | chr7_3:58339058-58339077 | Msa1112370:CDS | 30.0% | |
| ! | TTAGGCATCAAACTTCTTTT+TGG | + | chr7_3:58339191-58339210 | Msa1112370:intron | 30.0% |
| TACTGCTTTGTAATGTTGTT+TGG | + | chr7_3:58339522-58339541 | Msa1112370:three_prime_UTR | 30.0% | |
| GAAGAAGAAGAAGGAGAATT+TGG | - | chr7_3:58336302-58336321 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr7_3:58336311-58336330 | None:intergenic | 35.0% | |
| ! | TGCTAATGATGATGAAGAAG+AGG | - | chr7_3:58336375-58336394 | None:intergenic | 35.0% |
| ATCAATCTCCTCATCATCAT+TGG | - | chr7_3:58336413-58336432 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGATGTTGGTACC+AGG | - | chr7_3:58336509-58336528 | None:intergenic | 35.0% |
| ! | ATGCTGTAACTGTTTTGCAT+TGG | + | chr7_3:58336607-58336626 | Msa1112370:intron | 35.0% |
| !!! | AAATATTTTGGCCATACACG+TGG | - | chr7_3:58336664-58336683 | None:intergenic | 35.0% |
| CAGCAGAACATCAACAAAAT+TGG | - | chr7_3:58336765-58336784 | None:intergenic | 35.0% | |
| AACAAAGTAACTGAAGGATG+TGG | + | chr7_3:58337078-58337097 | Msa1112370:CDS | 35.0% | |
| ! | TTTGAAATATAGAGGGGGTA+AGG | - | chr7_3:58337165-58337184 | None:intergenic | 35.0% |
| ATCGATGCAATTTGAAAGGT+CGG | + | chr7_3:58337394-58337413 | Msa1112370:intron | 35.0% | |
| !! | TCAAGAAGGTCGTGTTTTTA+GGG | + | chr7_3:58337439-58337458 | Msa1112370:intron | 35.0% |
| TTTCTTGAATTTCGACAGAC+CGG | + | chr7_3:58337495-58337514 | Msa1112370:intron | 35.0% | |
| ! | GAATTTGATAACTCCTGGAA+AGG | + | chr7_3:58337549-58337568 | Msa1112370:CDS | 35.0% |
| TAAACAACGAGCAAAATTGG+TGG | - | chr7_3:58337599-58337618 | None:intergenic | 35.0% | |
| AACCATCTTATATCCCTTCA+TGG | - | chr7_3:58337726-58337745 | None:intergenic | 35.0% | |
| TTACACAAGCTTGGAAAGAA+GGG | + | chr7_3:58337760-58337779 | Msa1112370:CDS | 35.0% | |
| ! | GAAAAAGGCTTATGACCTTT+TGG | + | chr7_3:58337850-58337869 | Msa1112370:CDS | 35.0% |
| !! | TGTTGCAGCATAAAAGCATT+TGG | - | chr7_3:58337884-58337903 | None:intergenic | 35.0% |
| !!! | CTACTATTTTTTACGATCCG+TGG | + | chr7_3:58338108-58338127 | Msa1112370:intron | 35.0% |
| ! | AAACCAGTGTTTGTTAACCA+CGG | - | chr7_3:58338128-58338147 | None:intergenic | 35.0% |
| ! | GACATATTTGTGATGGGAAT+AGG | + | chr7_3:58338290-58338309 | Msa1112370:CDS | 35.0% |
| ! | TTTAAGATATTGTCCAACCC+CGG | - | chr7_3:58338333-58338352 | None:intergenic | 35.0% |
| TTCAGCACATTACTTTCAGA+TGG | - | chr7_3:58338489-58338508 | None:intergenic | 35.0% | |
| TCTGAAAGTAATGTGCTGAA+TGG | + | chr7_3:58338489-58338508 | Msa1112370:CDS | 35.0% | |
| GAAACAAAATGATGCTTACC+AGG | - | chr7_3:58338522-58338541 | None:intergenic | 35.0% | |
| CAAGTCTCTTACTGCAAAAT+CGG | + | chr7_3:58338581-58338600 | Msa1112370:intron | 35.0% | |
| ATTTGATGAGGACCTGTATA+TGG | - | chr7_3:58338614-58338633 | None:intergenic | 35.0% | |
| CCATTTCCAGTTATTTGATG+AGG | - | chr7_3:58338626-58338645 | None:intergenic | 35.0% | |
| CCTCATCAAATAACTGGAAA+TGG | + | chr7_3:58338623-58338642 | Msa1112370:CDS | 35.0% | |
| CAAATAACTGGAAATGGTGT+TGG | + | chr7_3:58338629-58338648 | Msa1112370:CDS | 35.0% | |
| TGGATTCAAACCAGACATAT+TGG | + | chr7_3:58338649-58338668 | Msa1112370:CDS | 35.0% | |
| CATATTGGACATGGATGTAA+TGG | + | chr7_3:58338664-58338683 | Msa1112370:CDS | 35.0% | |
| TGACAGTTAGGATAAACACA+AGG | - | chr7_3:58338757-58338776 | None:intergenic | 35.0% | |
| GACATAAGTTTGTGACAGTT+AGG | - | chr7_3:58338769-58338788 | None:intergenic | 35.0% | |
| TCACAAACTTATGTCGTTGT+AGG | + | chr7_3:58338774-58338793 | Msa1112370:intron | 35.0% | |
| GCTAATCTTCCTGAAAACAA+AGG | + | chr7_3:58339044-58339063 | Msa1112370:CDS | 35.0% | |
| ! | ATGCTTAGCAGTGTGATTTT+AGG | + | chr7_3:58339173-58339192 | Msa1112370:intron | 35.0% |
| TCTAGTAGTATGAGAACTCA+TGG | - | chr7_3:58339361-58339380 | None:intergenic | 35.0% | |
| !! | ACTACTAGAAAGCTTTGTTG+TGG | + | chr7_3:58339372-58339391 | Msa1112370:three_prime_UTR | 35.0% |
| GCAAGAATCGAGAAATTAGG+TGG | - | chr7_3:58336189-58336208 | None:intergenic | 40.0% | |
| TCGATTCTTGCATTGCAAGT+GGG | + | chr7_3:58336198-58336217 | Msa1112370:five_prime_UTR | 40.0% | |
| ATGAAGAAGAGGTTCTCTTG+AGG | - | chr7_3:58336364-58336383 | None:intergenic | 40.0% | |
| GATTTGCCTAAAGATCTTCC+TGG | + | chr7_3:58336488-58336507 | Msa1112370:CDS | 40.0% | |
| TTGGTACCAGGAAGATCTTT+AGG | - | chr7_3:58336497-58336516 | None:intergenic | 40.0% | |
| AGCATCACAGTCACCAATTA+AGG | - | chr7_3:58336592-58336611 | None:intergenic | 40.0% | |
| ! | CTCAAGAAGGTCGTGTTTTT+AGG | + | chr7_3:58337438-58337457 | Msa1112370:intron | 40.0% |
| TCGATTCAACTAACCTTTCC+AGG | - | chr7_3:58337565-58337584 | None:intergenic | 40.0% | |
| ATTCTGATAGAGCCAACATC+AGG | + | chr7_3:58337668-58337687 | Msa1112370:CDS | 40.0% | |
| GGGAATCAGTTTGGCATTTA+TGG | + | chr7_3:58337697-58337716 | Msa1112370:CDS | 40.0% | |
| TGCCATGAAGGGATATAAGA+TGG | + | chr7_3:58337721-58337740 | Msa1112370:CDS | 40.0% | |
| TATGCCATCTTACACAAGCT+TGG | + | chr7_3:58337751-58337770 | Msa1112370:CDS | 40.0% | |
| CTTTCCAAGCTTGTGTAAGA+TGG | - | chr7_3:58337758-58337777 | None:intergenic | 40.0% | |
| CTTACACAAGCTTGGAAAGA+AGG | + | chr7_3:58337759-58337778 | Msa1112370:CDS | 40.0% | |
| !! | AGGGTTTGTATGAGAGCATT+TGG | + | chr7_3:58337779-58337798 | Msa1112370:CDS | 40.0% |
| ! | TGGAGCTGAATTGATTCTCA+CGG | + | chr7_3:58337799-58337818 | Msa1112370:CDS | 40.0% |
| AATGGGAGGAACAGTGAAAA+AGG | + | chr7_3:58337835-58337854 | Msa1112370:CDS | 40.0% | |
| !! | CATTTGGTGTGGATTCCAAA+AGG | - | chr7_3:58337868-58337887 | None:intergenic | 40.0% |
| !! | CAGCATAAAAGCATTTGGTG+TGG | - | chr7_3:58337879-58337898 | None:intergenic | 40.0% |
| !! | ACCTTACCTTAGTATTGGCT+GGG | - | chr7_3:58337916-58337935 | None:intergenic | 40.0% |
| !! | AACCTTACCTTAGTATTGGC+TGG | - | chr7_3:58337917-58337936 | None:intergenic | 40.0% |
| CCATCAAATAGTGACTAGAG+CGG | + | chr7_3:58338049-58338068 | Msa1112370:intron | 40.0% | |
| AAACAACAGGTCCTGAGATA+TGG | + | chr7_3:58338246-58338265 | Msa1112370:CDS | 40.0% | |
| AACAACAGGTCCTGAGATAT+GGG | + | chr7_3:58338247-58338266 | Msa1112370:CDS | 40.0% | |
| TTTGTATCCTCCCATATCTC+AGG | - | chr7_3:58338260-58338279 | None:intergenic | 40.0% | |
| GAGATATGGGAGGATACAAA+TGG | + | chr7_3:58338260-58338279 | Msa1112370:CDS | 40.0% | |
| ! | TTTGTGATGGGAATAGGTAG+CGG | + | chr7_3:58338296-58338315 | Msa1112370:CDS | 40.0% |
| GAAAGTAATGTGCTGAATGG+TGG | + | chr7_3:58338492-58338511 | Msa1112370:CDS | 40.0% | |
| ATCGGATGTTGTCCATATAC+AGG | + | chr7_3:58338599-58338618 | Msa1112370:intron | 40.0% | |
| ACAGGTCCTCATCAAATAAC+TGG | + | chr7_3:58338617-58338636 | Msa1112370:intron | 40.0% | |
| CAAACCAGACATATTGGACA+TGG | + | chr7_3:58338655-58338674 | Msa1112370:CDS | 40.0% | |
| ACATCCATGTCCAATATGTC+TGG | - | chr7_3:58338662-58338681 | None:intergenic | 40.0% | |
| TACCATGAGTCCTTCTTTCA+AGG | - | chr7_3:58338839-58338858 | None:intergenic | 40.0% | |
| !! | TTCTAGGTTGGTATATCGTC+CGG | + | chr7_3:58338993-58339012 | Msa1112370:intron | 40.0% |
| CAGACTGTTCATCCAAGTTT+CGG | + | chr7_3:58339250-58339269 | Msa1112370:intron | 40.0% | |
| AGACTGTTCATCCAAGTTTC+GGG | + | chr7_3:58339251-58339270 | Msa1112370:intron | 40.0% | |
| TGAAAACATGCAGCCAGTTT+CGG | + | chr7_3:58339321-58339340 | Msa1112370:CDS | 40.0% | |
| AGACATTAATCGACCGAAAC+TGG | - | chr7_3:58339337-58339356 | None:intergenic | 40.0% | |
| !! | AGCTTTGTTGTGGAGTTACA+TGG | + | chr7_3:58339382-58339401 | Msa1112370:three_prime_UTR | 40.0% |
| ! | TTGTGTCTTCTTTTGGCACA+TGG | + | chr7_3:58339627-58339646 | Msa1112370:three_prime_UTR | 40.0% |
| CTCGATTCTTGCATTGCAAG+TGG | + | chr7_3:58336197-58336216 | Msa1112370:five_prime_UTR | 45.0% | |
| ATTCTTGCATTGCAAGTGGG+AGG | + | chr7_3:58336201-58336220 | Msa1112370:five_prime_UTR | 45.0% | |
| TCCTCATCATCATTGGATGC+TGG | - | chr7_3:58336406-58336425 | None:intergenic | 45.0% | |
| CTCATATCATGCCACGTGTA+TGG | + | chr7_3:58336650-58336669 | Msa1112370:intron | 45.0% | |
| CTGTCTTTGATGCTAGCAGT+AGG | - | chr7_3:58337138-58337157 | None:intergenic | 45.0% | |
| CTACTGCTAGCATCAAAGAC+AGG | + | chr7_3:58337136-58337155 | Msa1112370:CDS | 45.0% | |
| TCTTCCATCATAGCAAGTGC+CGG | - | chr7_3:58337517-58337536 | None:intergenic | 45.0% | |
| ! | AACGAGCAAAATTGGTGGCA+TGG | - | chr7_3:58337594-58337613 | None:intergenic | 45.0% |
| ATTCCCATGTTGCCTGATGT+TGG | - | chr7_3:58337683-58337702 | None:intergenic | 45.0% | |
| AGGCAACATGGGAATCAGTT+TGG | + | chr7_3:58337688-58337707 | Msa1112370:CDS | 45.0% | |
| GCATTTATGGCTGCCATGAA+GGG | + | chr7_3:58337710-58337729 | Msa1112370:CDS | 45.0% | |
| ATTCTCACGGATCCAACGAA+AGG | + | chr7_3:58337812-58337831 | Msa1112370:CDS | 45.0% | |
| ACGGATCCAACGAAAGGAAT+GGG | + | chr7_3:58337818-58337837 | Msa1112370:CDS | 45.0% | |
| TTCCAACCCAGCCAATACTA+AGG | + | chr7_3:58337907-58337926 | Msa1112370:CDS | 45.0% | |
| !! | TACCTTAGTATTGGCTGGGT+TGG | - | chr7_3:58337912-58337931 | None:intergenic | 45.0% |
| ACCCAGCCAATACTAAGGTA+AGG | + | chr7_3:58337912-58337931 | Msa1112370:intron | 45.0% | |
| CCGCTCTAGTCACTATTTGA+TGG | - | chr7_3:58338052-58338071 | None:intergenic | 45.0% | |
| GATCCGTGGTTAACAAACAC+TGG | + | chr7_3:58338122-58338141 | Msa1112370:intron | 45.0% | |
| CAGGTGCATTTCGAAACAAC+AGG | + | chr7_3:58338233-58338252 | Msa1112370:intron | 45.0% | |
| GTAGGTTAGCAGTGAAGATG+CGG | + | chr7_3:58338792-58338811 | Msa1112370:intron | 45.0% | |
| CAGTGAAGATGCGGTTAACA+TGG | + | chr7_3:58338801-58338820 | Msa1112370:CDS | 45.0% | |
| AAGATGCGGTTAACATGGCT+AGG | + | chr7_3:58338806-58338825 | Msa1112370:CDS | 45.0% | |
| GGTTAACATGGCTAGGACAT+TGG | + | chr7_3:58338813-58338832 | Msa1112370:CDS | 45.0% | |
| !! | AGGACATTGGCCTTGAAAGA+AGG | + | chr7_3:58338826-58338845 | Msa1112370:CDS | 45.0% |
| GACTGTTCATCCAAGTTTCG+GGG | + | chr7_3:58339252-58339271 | Msa1112370:intron | 45.0% | |
| CTTGGAACAAGACAGATGAC+AGG | - | chr7_3:58339285-58339304 | None:intergenic | 45.0% | |
| ! | CTGTCTTGTTCCAAGACCTT+CGG | + | chr7_3:58339290-58339309 | Msa1112370:CDS | 45.0% |
| ! | TGTTTTCAGCTTCTGTCCGA+AGG | - | chr7_3:58339309-58339328 | None:intergenic | 45.0% |
| ! | ACAATGCATGCCACTTGGTT+GGG | - | chr7_3:58339684-58339703 | None:intergenic | 45.0% |
| !!! | TTTTTTAAACAATTTTTTAT+TGG | + | chr7_3:58336961-58336980 | Msa1112370:intron | 5.0% |
| !!! | TTAAATTTTATAACATATTT+TGG | - | chr7_3:58339580-58339599 | None:intergenic | 5.0% |
| ! | GCCAGCATCCAATGATGATG+AGG | + | chr7_3:58336402-58336421 | Msa1112370:CDS | 50.0% |
| AGAGCCAACATCAGGCAACA+TGG | + | chr7_3:58337676-58337695 | Msa1112370:CDS | 50.0% | |
| GAGCCAACATCAGGCAACAT+GGG | + | chr7_3:58337677-58337696 | Msa1112370:CDS | 50.0% | |
| GGCATTTATGGCTGCCATGA+AGG | + | chr7_3:58337709-58337728 | Msa1112370:CDS | 50.0% | |
| CACGGATCCAACGAAAGGAA+TGG | + | chr7_3:58337817-58337836 | Msa1112370:CDS | 50.0% | |
| GATCCAACGAAAGGAATGGG+AGG | + | chr7_3:58337821-58337840 | Msa1112370:CDS | 50.0% | |
| GTTCCTCCCATTCCTTTCGT+TGG | - | chr7_3:58337827-58337846 | None:intergenic | 50.0% | |
| AACAGGTCCTGAGATATGGG+AGG | + | chr7_3:58338250-58338269 | Msa1112370:CDS | 50.0% | |
| GTGCTGAATGGTGGTAAACC+TGG | + | chr7_3:58338501-58338520 | Msa1112370:CDS | 50.0% | |
| GGCCTTGAAAGAAGGACTCA+TGG | + | chr7_3:58338834-58338853 | Msa1112370:CDS | 50.0% | |
| TGCTGCAACTGTGTTTGCTC+CGG | - | chr7_3:58339015-58339034 | None:intergenic | 50.0% | |
| CACAGTTGCAGCACTCAGAT+TGG | + | chr7_3:58339022-58339041 | Msa1112370:CDS | 50.0% | |
| ! | AGGTATCGTTCCCCGAAACT+TGG | - | chr7_3:58339265-58339284 | None:intergenic | 50.0% |
| TTAAAGCCGACCCAACCAAG+TGG | + | chr7_3:58339671-58339690 | Msa1112370:three_prime_UTR | 50.0% | |
| ! | GACAATGCATGCCACTTGGT+TGG | - | chr7_3:58339685-58339704 | None:intergenic | 50.0% |
| CTTGCATTGCAAGTGGGAGG+AGG | + | chr7_3:58336204-58336223 | Msa1112370:five_prime_UTR | 55.0% | |
| !! | CAGACCGGCACTTGCTATGA+TGG | + | chr7_3:58337510-58337529 | Msa1112370:intron | 55.0% |
| ! | GTGATGGGAATAGGTAGCGG+AGG | + | chr7_3:58338299-58338318 | Msa1112370:CDS | 55.0% |
| CAGCTTCTGTCCGAAGGTCT+TGG | - | chr7_3:58339303-58339322 | None:intergenic | 55.0% | |
| ! | TGCATGCCACTTGGTTGGGT+CGG | - | chr7_3:58339680-58339699 | None:intergenic | 55.0% |
| !! | GGGAATAGGTAGCGGAGGCA+CGG | + | chr7_3:58338304-58338323 | Msa1112370:CDS | 60.0% |
| !! | GGTAGCGGAGGCACGGTTTC+CGG | + | chr7_3:58338311-58338330 | Msa1112370:CDS | 65.0% |
| ! | GTAGCGGAGGCACGGTTTCC+GGG | + | chr7_3:58338312-58338331 | Msa1112370:CDS | 65.0% |
| ! | TAGCGGAGGCACGGTTTCCG+GGG | + | chr7_3:58338313-58338332 | Msa1112370:CDS | 65.0% |
| ! | GGAGGCACGGTTTCCGGGGT+TGG | + | chr7_3:58338317-58338336 | Msa1112370:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 58336164 | 58339704 | 58336164 | ID=Msa1112370;Name=Msa1112370 |
| chr7_3 | mRNA | 58336164 | 58339704 | 58336164 | ID=Msa1112370-mRNA-1;Parent=Msa1112370;Name=Msa1112370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=177|1|1|1|1|1|10|353|379 |
| chr7_3 | exon | 58336164 | 58336538 | 58336164 | ID=Msa1112370-mRNA-1:exon:12770;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58337048 | 58337157 | 58337048 | ID=Msa1112370-mRNA-1:exon:12771;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58337513 | 58337570 | 58337513 | ID=Msa1112370-mRNA-1:exon:12772;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58337665 | 58337928 | 58337665 | ID=Msa1112370-mRNA-1:exon:12773;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58338236 | 58338373 | 58338236 | ID=Msa1112370-mRNA-1:exon:12774;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58338471 | 58338522 | 58338471 | ID=Msa1112370-mRNA-1:exon:12775;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58338621 | 58338700 | 58338621 | ID=Msa1112370-mRNA-1:exon:12776;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58338796 | 58338855 | 58338796 | ID=Msa1112370-mRNA-1:exon:12777;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58338999 | 58339079 | 58338999 | ID=Msa1112370-mRNA-1:exon:12778;Parent=Msa1112370-mRNA-1 |
| chr7_3 | exon | 58339253 | 58339704 | 58339253 | ID=Msa1112370-mRNA-1:exon:12779;Parent=Msa1112370-mRNA-1 |
| chr7_3 | five_prime_UTR | 58336164 | 58336340 | 58336164 | ID=Msa1112370-mRNA-1:five_prime_utr;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58336341 | 58336538 | 58336341 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58337048 | 58337157 | 58337048 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58337513 | 58337570 | 58337513 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58337665 | 58337928 | 58337665 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58338236 | 58338373 | 58338236 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58338471 | 58338522 | 58338471 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58338621 | 58338700 | 58338621 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58338796 | 58338855 | 58338796 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58338999 | 58339079 | 58338999 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | CDS | 58339253 | 58339351 | 58339253 | ID=Msa1112370-mRNA-1:cds;Parent=Msa1112370-mRNA-1 |
| chr7_3 | three_prime_UTR | 58339352 | 58339704 | 58339352 | ID=Msa1112370-mRNA-1:three_prime_utr;Parent=Msa1112370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
