Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300090 | sp|Q9C907|GDPD5_ARATH | 72.610 | 387 | 105 | 1 | 4 | 389 | 3 | 389 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300090 | A0A072URQ0 | 97.429 | 389 | 10 | 0 | 2 | 390 | 3 | 391 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014120 | Msa1300090 | 0.802400 | 5.712388e-49 | -8.615850e-47 |
| Msa0069260 | Msa1300090 | 0.806886 | 6.615157e-50 | -8.615850e-47 |
| Msa0076670 | Msa1300090 | 0.816481 | 5.409457e-52 | -8.615850e-47 |
| Msa0078660 | Msa1300090 | 0.803923 | 2.765250e-49 | -8.615850e-47 |
| Msa0623170 | Msa1300090 | 0.823573 | 1.288112e-53 | -8.615850e-47 |
| Msa0629630 | Msa1300090 | 0.814509 | 1.485658e-51 | -8.615850e-47 |
| Msa0658570 | Msa1300090 | 0.804964 | 1.677346e-49 | -8.615850e-47 |
| Msa0703490 | Msa1300090 | 0.826453 | 2.690345e-54 | -8.615850e-47 |
| Msa0708050 | Msa1300090 | -0.831310 | 1.795210e-55 | -8.615850e-47 |
| Msa0708190 | Msa1300090 | -0.816435 | 5.537376e-52 | -8.615850e-47 |
| Msa0731470 | Msa1300090 | 0.825790 | 3.867367e-54 | -8.615850e-47 |
| Msa0743680 | Msa1300090 | 0.838877 | 2.214157e-57 | -8.615850e-47 |
| Msa0784620 | Msa1300090 | 0.851182 | 1.048187e-60 | -8.615850e-47 |
| Msa0809740 | Msa1300090 | 0.832657 | 8.339517e-56 | -8.615850e-47 |
| Msa0824730 | Msa1300090 | 0.804401 | 2.198546e-49 | -8.615850e-47 |
| Msa0842050 | Msa1300090 | 0.804183 | 2.440664e-49 | -8.615850e-47 |
| Msa0125370 | Msa1300090 | -0.806874 | 6.655841e-50 | -8.615850e-47 |
| Msa0126380 | Msa1300090 | 0.804948 | 1.690618e-49 | -8.615850e-47 |
| Msa0130140 | Msa1300090 | -0.853322 | 2.579254e-61 | -8.615850e-47 |
| Msa0175850 | Msa1300090 | -0.841397 | 4.872561e-58 | -8.615850e-47 |
| Msa0190830 | Msa1300090 | 0.802459 | 5.553900e-49 | -8.615850e-47 |
| Msa0196020 | Msa1300090 | -0.838324 | 3.077972e-57 | -8.615850e-47 |
| Msa0223290 | Msa1300090 | 0.806964 | 6.368347e-50 | -8.615850e-47 |
| Msa0223380 | Msa1300090 | 0.805037 | 1.619372e-49 | -8.615850e-47 |
| Msa0235670 | Msa1300090 | 0.803787 | 2.950787e-49 | -8.615850e-47 |
| Msa1260200 | Msa1300090 | 0.952442 | 2.403132e-110 | -8.615850e-47 |
| Msa1267060 | Msa1300090 | 0.819031 | 1.437571e-52 | -8.615850e-47 |
| Msa1269580 | Msa1300090 | -0.801132 | 1.040212e-48 | -8.615850e-47 |
| Msa1300090 | Msa1376890 | 0.803517 | 3.356728e-49 | -8.615850e-47 |
| Msa1300090 | Msa1399500 | 0.825011 | 5.913766e-54 | -8.615850e-47 |
| Msa1300090 | Msa1401530 | 0.816100 | 6.579864e-52 | -8.615850e-47 |
| Msa1300090 | Msa1409750 | 0.817165 | 3.798356e-52 | -8.615850e-47 |
| Msa1300090 | Msa1435400 | 0.800342 | 1.507521e-48 | -8.615850e-47 |
| Msa1300090 | Msa1442220 | -0.809263 | 2.063200e-50 | -8.615850e-47 |
| Msa1300090 | Msa1447160 | -0.809022 | 2.323168e-50 | -8.615850e-47 |
| Msa0371180 | Msa1300090 | 0.831294 | 1.810640e-55 | -8.615850e-47 |
| Msa0377530 | Msa1300090 | 0.855938 | 4.507136e-62 | -8.615850e-47 |
| Msa0388030 | Msa1300090 | -0.844349 | 7.989390e-59 | -8.615850e-47 |
| Msa0422500 | Msa1300090 | 0.843871 | 1.072957e-58 | -8.615850e-47 |
| Msa0426810 | Msa1300090 | 0.821121 | 4.778851e-53 | -8.615850e-47 |
| Msa0445280 | Msa1300090 | 0.801233 | 9.919196e-49 | -8.615850e-47 |
| Msa0450350 | Msa1300090 | 0.841757 | 3.915714e-58 | -8.615850e-47 |
| Msa0467920 | Msa1300090 | -0.834404 | 3.056571e-56 | -8.615850e-47 |
| Msa0473240 | Msa1300090 | 0.826230 | 3.040816e-54 | -8.615850e-47 |
| Msa1066870 | Msa1300090 | 0.833410 | 5.418276e-56 | -8.615850e-47 |
| Msa1077670 | Msa1300090 | 0.802881 | 4.545117e-49 | -8.615850e-47 |
| Msa0266000 | Msa1300090 | -0.810390 | 1.180474e-50 | -8.615850e-47 |
| Msa0268090 | Msa1300090 | 0.814438 | 1.540689e-51 | -8.615850e-47 |
| Msa0275400 | Msa1300090 | -0.800052 | 1.726605e-48 | -8.615850e-47 |
| Msa0302650 | Msa1300090 | 0.808436 | 3.099571e-50 | -8.615850e-47 |
| Msa0307110 | Msa1300090 | 0.803038 | 4.219069e-49 | -8.615850e-47 |
| Msa0314120 | Msa1300090 | 0.831583 | 1.537127e-55 | -8.615850e-47 |
| Msa0356890 | Msa1300090 | -0.811129 | 8.168376e-51 | -8.615850e-47 |
| Msa1112370 | Msa1300090 | 0.814280 | 1.669217e-51 | -8.615850e-47 |
| Msa1164530 | Msa1300090 | 0.805063 | 1.599844e-49 | -8.615850e-47 |
| Msa1196040 | Msa1300090 | 0.806302 | 8.786400e-50 | -8.615850e-47 |
| Msa1212800 | Msa1300090 | 0.942171 | 1.152332e-101 | -8.615850e-47 |
| Msa1213020 | Msa1300090 | 0.969650 | 1.957334e-130 | -8.615850e-47 |
| Msa1217900 | Msa1300090 | -0.812882 | 3.388995e-51 | -8.615850e-47 |
| Msa1219810 | Msa1300090 | 0.819679 | 1.023531e-52 | -8.615850e-47 |
| Msa0511250 | Msa1300090 | 0.847229 | 1.319620e-59 | -8.615850e-47 |
| Msa0517490 | Msa1300090 | 0.863585 | 2.240768e-64 | -8.615850e-47 |
| Msa0527980 | Msa1300090 | -0.820447 | 6.827289e-53 | -8.615850e-47 |
| Msa0531990 | Msa1300090 | -0.818356 | 2.045715e-52 | -8.615850e-47 |
| Msa0532100 | Msa1300090 | -0.813735 | 2.201894e-51 | -8.615850e-47 |
| Msa0567020 | Msa1300090 | 0.829682 | 4.489361e-55 | -8.615850e-47 |
| Msa0579390 | Msa1300090 | 0.803924 | 2.763316e-49 | -8.615850e-47 |
| Msa0589390 | Msa1300090 | 0.800017 | 1.755336e-48 | -8.615850e-47 |
| Msa0849330 | Msa1300090 | 0.817417 | 3.333060e-52 | -8.615850e-47 |
| Msa0853860 | Msa1300090 | 0.801804 | 7.573639e-49 | -8.615850e-47 |
| Msa0863800 | Msa1300090 | 0.831606 | 1.517765e-55 | -8.615850e-47 |
| Msa0894890 | Msa1300090 | 0.806042 | 9.967959e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300090 | MtrunA17_Chr4g0061511 | 97.429 | 389 | 10 | 0 | 2 | 390 | 3 | 391 | 0.0 | 788 |
| Msa1300090 | MtrunA17_Chr5g0445151 | 28.173 | 323 | 192 | 15 | 44 | 354 | 37 | 331 | 3.06e-18 | 86.7 |
| Msa1300090 | MtrunA17_Chr5g0445151 | 23.620 | 326 | 214 | 10 | 47 | 363 | 358 | 657 | 2.21e-17 | 84.3 |
| Msa1300090 | MtrunA17_Chr2g0304791 | 26.220 | 328 | 196 | 12 | 47 | 361 | 277 | 571 | 1.29e-17 | 84.7 |
| Msa1300090 | MtrunA17_Chr2g0304791 | 27.660 | 282 | 176 | 12 | 82 | 360 | 13 | 269 | 1.08e-12 | 69.7 |
| Msa1300090 | MtrunA17_Chr3g0100611 | 26.235 | 324 | 212 | 12 | 37 | 354 | 29 | 331 | 3.24e-16 | 80.5 |
| Msa1300090 | MtrunA17_Chr3g0100611 | 22.186 | 311 | 207 | 9 | 51 | 354 | 362 | 644 | 7.19e-13 | 70.1 |
| Msa1300090 | MtrunA17_Chr4g0074331 | 25.538 | 325 | 203 | 15 | 43 | 360 | 62 | 354 | 8.10e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300090 | AT1G74210.1 | 72.610 | 387 | 105 | 1 | 4 | 389 | 3 | 389 | 0.0 | 593 |
| Msa1300090 | AT5G08030.1 | 76.989 | 352 | 81 | 0 | 16 | 367 | 16 | 367 | 0.0 | 582 |
| Msa1300090 | AT5G08030.2 | 76.989 | 352 | 81 | 0 | 16 | 367 | 31 | 382 | 0.0 | 582 |
| Msa1300090 | AT4G26690.1 | 22.785 | 316 | 211 | 8 | 47 | 354 | 363 | 653 | 9.77e-18 | 85.9 |
| Msa1300090 | AT4G26690.1 | 24.471 | 331 | 192 | 10 | 44 | 354 | 44 | 336 | 5.18e-17 | 83.6 |
| Msa1300090 | AT1G66970.1 | 23.734 | 316 | 209 | 9 | 47 | 354 | 369 | 660 | 4.74e-17 | 83.6 |
| Msa1300090 | AT1G66970.1 | 27.273 | 330 | 198 | 14 | 37 | 354 | 43 | 342 | 6.00e-16 | 80.1 |
| Msa1300090 | AT1G66970.2 | 23.175 | 315 | 212 | 8 | 47 | 354 | 391 | 682 | 5.36e-17 | 83.6 |
| Msa1300090 | AT1G66970.2 | 27.245 | 323 | 193 | 14 | 44 | 354 | 72 | 364 | 1.17e-15 | 79.3 |
| Msa1300090 | AT5G55480.1 | 20.958 | 334 | 231 | 8 | 47 | 371 | 368 | 677 | 5.96e-17 | 83.2 |
| Msa1300090 | AT1G66970.3 | 23.175 | 315 | 212 | 8 | 47 | 354 | 175 | 466 | 6.50e-17 | 82.8 |
| Msa1300090 | AT3G20520.1 | 20.988 | 324 | 232 | 7 | 47 | 363 | 340 | 646 | 2.35e-15 | 78.2 |
| Msa1300090 | AT1G66980.3 | 24.051 | 316 | 207 | 9 | 47 | 354 | 372 | 662 | 5.35e-14 | 74.3 |
| Msa1300090 | AT1G66980.1 | 24.051 | 316 | 207 | 9 | 47 | 354 | 372 | 662 | 5.81e-14 | 74.3 |
| Msa1300090 | AT1G66980.2 | 24.051 | 316 | 207 | 9 | 47 | 354 | 401 | 691 | 6.34e-14 | 74.3 |
| Msa1300090 | AT1G66980.4 | 24.051 | 316 | 207 | 9 | 47 | 354 | 355 | 645 | 6.67e-14 | 73.9 |
Find 102 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTGTTTGCCGCGGAAAT+AGG | 0.120882 | 8_3:+61510258 | None:intergenic |
| CCCCTATGTGCAACGTTATA+TGG | 0.136452 | 8_3:+61509315 | None:intergenic |
| TGCAGTTGATTTCACATTAA+AGG | 0.140506 | 8_3:-61508231 | Msa1300090:intron |
| TGAATCAGAGGTTCAGCTTT+AGG | 0.246627 | 8_3:-61508190 | Msa1300090:CDS |
| GTTGAAACACTTCGGAAATA+TGG | 0.255128 | 8_3:-61507124 | Msa1300090:CDS |
| TGATTACTGGATCAACAAAA+TGG | 0.274727 | 8_3:-61506127 | Msa1300090:CDS |
| AAGCAATATGTTGTAGGAAT+TGG | 0.302113 | 8_3:-61506722 | Msa1300090:CDS |
| GTATCGTAGGAACGTGAAAA+TGG | 0.309244 | 8_3:+61510222 | None:intergenic |
| TATCTCAATGTCTTCGTTAT+CGG | 0.318763 | 8_3:-61510141 | Msa1300090:exon |
| ACATATAAGAACACCATCTT+TGG | 0.329743 | 8_3:+61508836 | None:intergenic |
| GAATCAGAGGTTCAGCTTTA+GGG | 0.347631 | 8_3:-61508189 | Msa1300090:CDS |
| AGAAACTCGCGAGGCATATC+TGG | 0.353981 | 8_3:-61509271 | Msa1300090:intron |
| TATGCCTCGCGAGTTTCTTC+AGG | 0.363128 | 8_3:+61509276 | None:intergenic |
| TCTTGTCATCTTGACGGTTA+GGG | 0.364460 | 8_3:+61506043 | None:intergenic |
| ATCTCAATGTCTTCGTTATC+GGG | 0.369178 | 8_3:-61510140 | Msa1300090:intron |
| GTCTTGTCATCTTGACGGTT+AGG | 0.371938 | 8_3:+61506042 | None:intergenic |
| TTCTCATTTCTGTACGTGTA+TGG | 0.378212 | 8_3:+61506195 | None:intergenic |
| CTTACAAGGAGTATGATTAC+TGG | 0.378731 | 8_3:-61506140 | Msa1300090:CDS |
| ATGATTATGTGCAGTCATAT+TGG | 0.381861 | 8_3:-61506778 | Msa1300090:intron |
| AGGCCTTTGTATCCACTTCC+TGG | 0.386639 | 8_3:-61509381 | Msa1300090:CDS |
| CGTTGTTTGCCGCGGAAATA+GGG | 0.389693 | 8_3:+61510259 | None:intergenic |
| CCCATATAACGTTGCACATA+GGG | 0.394571 | 8_3:-61509316 | Msa1300090:CDS |
| CTCCTTCGGATCTTGTTGCC+AGG | 0.400869 | 8_3:-61506652 | Msa1300090:CDS |
| GATATATACACAAGTGAAGT+TGG | 0.401531 | 8_3:+61507037 | None:intergenic |
| TGATTATGTGCAGTCATATT+GGG | 0.403241 | 8_3:-61506777 | Msa1300090:intron |
| ATCAACAAAATGGGAATTGA+TGG | 0.404261 | 8_3:-61506117 | Msa1300090:CDS |
| GATATAAATAACAGGTGAAA+TGG | 0.409069 | 8_3:-61507177 | Msa1300090:intron |
| TTGGATGCACCCAGAGTTGT+TGG | 0.424638 | 8_3:-61507696 | Msa1300090:CDS |
| CCCTATGTGCAACGTTATAT+GGG | 0.427804 | 8_3:+61509316 | None:intergenic |
| TACATAAAGCAATATGTTGT+AGG | 0.433660 | 8_3:-61506728 | Msa1300090:CDS |
| TTTAGGGATCAACAGTTTAA+CGG | 0.437378 | 8_3:-61508173 | Msa1300090:intron |
| TTCCTACTTACGTTCTAAAT+CGG | 0.439458 | 8_3:+61510313 | None:intergenic |
| GTTGCACATAGGGGCTCAAA+TGG | 0.451850 | 8_3:-61509306 | Msa1300090:CDS |
| TACCAGTGAAATCTGTAAAC+AGG | 0.454717 | 8_3:+61506094 | None:intergenic |
| AGGATATATTCCAACAACTC+TGG | 0.460634 | 8_3:+61507686 | None:intergenic |
| CAGTAATCATACTCCTTGTA+AGG | 0.464985 | 8_3:+61506141 | None:intergenic |
| CTTCCATGGTCACCTTTGCC+AGG | 0.470270 | 8_3:+61509363 | None:intergenic |
| GAAGAGGCTGCTTACTTCCA+TGG | 0.474342 | 8_3:+61509349 | None:intergenic |
| ATGCAGTCTTGTCATCTTGA+CGG | 0.475282 | 8_3:+61506037 | None:intergenic |
| CATATTGCTTTATGTAGTCT+AGG | 0.476260 | 8_3:+61506735 | None:intergenic |
| CTCAAATTATCATGACAACC+TGG | 0.478264 | 8_3:+61510357 | None:intergenic |
| GTCGGACGGCAAACGATTTG+AGG | 0.480583 | 8_3:-61507155 | Msa1300090:CDS |
| AGAGTTCATTACCATAGCAT+TGG | 0.485013 | 8_3:-61507715 | Msa1300090:CDS |
| TGGTCACCTTTGCCAGGAAG+TGG | 0.486182 | 8_3:+61509369 | None:intergenic |
| GATTACTGGATCAACAAAAT+GGG | 0.486674 | 8_3:-61506126 | Msa1300090:CDS |
| GTCGAAGGGGTCATTACCAC+TGG | 0.489266 | 8_3:-61508735 | Msa1300090:CDS |
| ACATGCTGATTGATAAGTAC+TGG | 0.490440 | 8_3:+61507651 | None:intergenic |
| TTCAACACAAGACACTAATC+AGG | 0.497899 | 8_3:-61506966 | Msa1300090:intron |
| ACGGCAAACGATTTGAGGAC+AGG | 0.499996 | 8_3:-61507150 | Msa1300090:CDS |
| AAGTAGGAACAAAGAAATGC+GGG | 0.504234 | 8_3:-61510299 | Msa1300090:five_prime_UTR |
| TTGAGTCTTCTTCGTATCGT+AGG | 0.509596 | 8_3:+61510209 | None:intergenic |
| GATATATTATCTTCCAAAGA+TGG | 0.509816 | 8_3:-61508849 | Msa1300090:CDS |
| TGTGTATATATCAAATCAAA+CGG | 0.510034 | 8_3:-61507026 | Msa1300090:CDS |
| CAACTATGTGATGACTCCTT+CGG | 0.513161 | 8_3:-61506666 | Msa1300090:CDS |
| GGATATATTCCAACAACTCT+GGG | 0.526903 | 8_3:+61507687 | None:intergenic |
| ACTTCGGAAATATGGATACA+AGG | 0.529530 | 8_3:-61507116 | Msa1300090:CDS |
| TCCTTCGGATCTTGTTGCCA+GGG | 0.530863 | 8_3:-61506651 | Msa1300090:CDS |
| ATGCGGGGAATATTCGTTTG+TGG | 0.532195 | 8_3:-61510283 | Msa1300090:five_prime_UTR |
| TGTAGGAATTGGACCTTGGA+AGG | 0.532490 | 8_3:-61506711 | Msa1300090:CDS |
| ATGTGTTGTGTTCGTCACTC+AGG | 0.533545 | 8_3:+61510180 | None:intergenic |
| CTTTAGTCAAGATCCTTACA+AGG | 0.536799 | 8_3:-61506154 | Msa1300090:CDS |
| CTTGTCATCTTGACGGTTAG+GGG | 0.536985 | 8_3:+61506044 | None:intergenic |
| GCCCATATAACGTTGCACAT+AGG | 0.541427 | 8_3:-61509317 | Msa1300090:CDS |
| TTGTATCCACTTCCTGGCAA+AGG | 0.547465 | 8_3:-61509375 | Msa1300090:CDS |
| GTTCATACCTGTCAAAACAT+TGG | 0.548979 | 8_3:-61507093 | Msa1300090:CDS |
| GGCACATGCTCATAATCTGC+AGG | 0.551055 | 8_3:-61506630 | Msa1300090:intron |
| AAAAGAACATATGAAGTCGA+AGG | 0.561446 | 8_3:-61508750 | Msa1300090:CDS |
| TTGCAGAGAGCTATTGAGGA+AGG | 0.565109 | 8_3:-61508891 | Msa1300090:intron |
| AAAGAACATATGAAGTCGAA+GGG | 0.565876 | 8_3:-61508749 | Msa1300090:CDS |
| TAAATAACAGGTGAAATGGT+CGG | 0.572543 | 8_3:-61507173 | Msa1300090:intron |
| TCTGGGTGCATCCAATGCTA+TGG | 0.574074 | 8_3:+61507704 | None:intergenic |
| TGAAGCTAGGATTACTGAGT+GGG | 0.576746 | 8_3:-61505738 | Msa1300090:three_prime_UTR |
| ACAGGTTTGTTGAAACACTT+CGG | 0.580004 | 8_3:-61507132 | Msa1300090:CDS |
| CAGATTATGAGCATGTGCCC+TGG | 0.581110 | 8_3:+61506634 | None:intergenic |
| CTTCCTGGCAAAGGTGACCA+TGG | 0.581158 | 8_3:-61509366 | Msa1300090:CDS |
| ATCACATAGTTGTTAACCAC+AGG | 0.582933 | 8_3:+61506677 | None:intergenic |
| GGCCTGTTTACAGATTTCAC+TGG | 0.586096 | 8_3:-61506096 | Msa1300090:CDS |
| TTGAAGCTAGGATTACTGAG+TGG | 0.587365 | 8_3:-61505739 | Msa1300090:three_prime_UTR |
| ATTAAAGTCGTTGTTTGCCG+CGG | 0.592518 | 8_3:+61510251 | None:intergenic |
| TCAAATTATCATGACAACCT+GGG | 0.594719 | 8_3:+61510358 | None:intergenic |
| GCAAATGACTGTATAAATGC+AGG | 0.602676 | 8_3:+61507061 | None:intergenic |
| AACCGATTTAGAACGTAAGT+AGG | 0.609010 | 8_3:-61510315 | Msa1300090:five_prime_UTR |
| ATGTTGTAGGAATTGGACCT+TGG | 0.610872 | 8_3:-61506715 | Msa1300090:CDS |
| TATGGGCGAAAAGTTTGAAG+AGG | 0.612743 | 8_3:+61509333 | None:intergenic |
| AGTCGCTGAGGGTGAATCAG+AGG | 0.615291 | 8_3:-61508202 | Msa1300090:CDS |
| AAAGGAATTAAAGTCGCTGA+GGG | 0.619575 | 8_3:-61508213 | Msa1300090:CDS |
| ATAAGTTTAAAGTTGTATTG+CGG | 0.619609 | 8_3:-61505790 | Msa1300090:three_prime_UTR |
| TAAAGGAATTAAAGTCGCTG+AGG | 0.621868 | 8_3:-61508214 | Msa1300090:CDS |
| CCATATAACGTTGCACATAG+GGG | 0.625643 | 8_3:-61509315 | Msa1300090:CDS |
| TTTCTATTGCTCGTGATTGG+GGG | 0.629901 | 8_3:-61509411 | Msa1300090:CDS |
| CTTCGGAAATATGGATACAA+GGG | 0.630595 | 8_3:-61507115 | Msa1300090:CDS |
| GAAGGATACTATAGTACCTG+TGG | 0.635202 | 8_3:-61506693 | Msa1300090:CDS |
| GGTACTATAGTATCCTTCCA+AGG | 0.636568 | 8_3:+61506698 | None:intergenic |
| TAACAGGTGAAATGGTCGGA+CGG | 0.639574 | 8_3:-61507169 | Msa1300090:intron |
| GCCCTGGCAACAAGATCCGA+AGG | 0.642209 | 8_3:+61506650 | None:intergenic |
| TTGCCAGGAAGTGGATACAA+AGG | 0.653361 | 8_3:+61509378 | None:intergenic |
| GTTTGTGGACCCTATTTCCG+CGG | 0.656130 | 8_3:-61510268 | Msa1300090:five_prime_UTR |
| TAAGTAGGAACAAAGAAATG+CGG | 0.661353 | 8_3:-61510300 | Msa1300090:five_prime_UTR |
| ACTTCCTGAAGAAACTCGCG+AGG | 0.669064 | 8_3:-61509280 | Msa1300090:CDS |
| TATTATCAAGAGTAACGTCG+TGG | 0.673707 | 8_3:+61508811 | None:intergenic |
| AAGAACATATGAAGTCGAAG+GGG | 0.698335 | 8_3:-61508748 | Msa1300090:CDS |
| AGTAGGAACAAAGAAATGCG+GGG | 0.710560 | 8_3:-61510298 | Msa1300090:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACAAATATCATTTTT+AGG | + | chr8_3:61507195-61507214 | None:intergenic | 10.0% |
| !! | ATTAAATTGATATAAATAAC+AGG | - | chr8_3:61508919-61508938 | Msa1300090:intron | 10.0% |
| !!! | TAAAAAAAACACAATTTTAG+CGG | + | chr8_3:61506141-61506160 | None:intergenic | 15.0% |
| !! | CATAAAACTATTATTTACTT+TGG | - | chr8_3:61508290-61508309 | Msa1300090:intron | 15.0% |
| !! | ATATAGATAGATAGATTAAG+TGG | - | chr8_3:61506170-61506189 | Msa1300090:CDS | 20.0% |
| !!! | TGCATTTTGAAATGAAAATT+GGG | + | chr8_3:61506206-61506225 | None:intergenic | 20.0% |
| !!! | ATGCATTTTGAAATGAAAAT+TGG | + | chr8_3:61506207-61506226 | None:intergenic | 20.0% |
| !! | TTAGTTAGTTAGTATGAAAA+TGG | - | chr8_3:61506555-61506574 | Msa1300090:intron | 20.0% |
| !! | TAGTTAGTTAGTATGAAAAT+GGG | - | chr8_3:61506556-61506575 | Msa1300090:intron | 20.0% |
| !! | ATTTCCTTCGTAAAATATAT+TGG | - | chr8_3:61507438-61507457 | Msa1300090:intron | 20.0% |
| !! | TTTCCTTCGTAAAATATATT+GGG | - | chr8_3:61507439-61507458 | Msa1300090:intron | 20.0% |
| !! | AATGGTAACTCAATAAATTA+AGG | + | chr8_3:61507659-61507678 | None:intergenic | 20.0% |
| !!! | TAGACGTATTTCTTAATTTT+AGG | - | chr8_3:61507689-61507708 | Msa1300090:CDS | 20.0% |
| !!! | AGACGTATTTCTTAATTTTA+GGG | - | chr8_3:61507690-61507709 | Msa1300090:CDS | 20.0% |
| !!! | ATTAATTGTGAACTATTTTG+TGG | - | chr8_3:61508030-61508049 | Msa1300090:intron | 20.0% |
| !!! | TGAACCATTTTAAAATCTAA+TGG | + | chr8_3:61508213-61508232 | None:intergenic | 20.0% |
| !!! | CATGATATGTTTTATAATCA+AGG | - | chr8_3:61508671-61508690 | Msa1300090:intron | 20.0% |
| !! | TTAGGATAATGATTATTGTA+CGG | - | chr8_3:61508720-61508739 | Msa1300090:intron | 20.0% |
| !!! | GTGAGATTATGTTATATTTT+TGG | - | chr8_3:61508743-61508762 | Msa1300090:CDS | 20.0% |
| !! | TGTGTATATATCAAATCAAA+CGG | - | chr8_3:61509078-61509097 | Msa1300090:intron | 20.0% |
| !!! | TCATCGATTAAAAAAATCTT+AGG | + | chr8_3:61509109-61509128 | None:intergenic | 20.0% |
| !! | CAACATTGTATAACATTAAA+AGG | + | chr8_3:61509252-61509271 | None:intergenic | 20.0% |
| !!! | ATAAGTTTAAAGTTGTATTG+CGG | - | chr8_3:61510314-61510333 | Msa1300090:five_prime_UTR | 20.0% |
| !! | TTTATTAGCCTCTGTATAAA+TGG | - | chr8_3:61506020-61506039 | Msa1300090:CDS | 25.0% |
| ! | AATTGAAAATTGAAGCAAGT+TGG | + | chr8_3:61506063-61506082 | None:intergenic | 25.0% |
| !! | CTTGCTTCAATTTTCAATTT+TGG | - | chr8_3:61506064-61506083 | Msa1300090:CDS | 25.0% |
| ! | ATGATTAAGTTATGCAAGAA+TGG | - | chr8_3:61506279-61506298 | Msa1300090:intron | 25.0% |
| ! | ATGAAAAGAGAAACATTTGA+AGG | + | chr8_3:61506332-61506351 | None:intergenic | 25.0% |
| !!! | TTCTGCTTTTATCACTAATT+TGG | - | chr8_3:61506401-61506420 | Msa1300090:intron | 25.0% |
| !!! | TCTGCTTTTATCACTAATTT+GGG | - | chr8_3:61506402-61506421 | Msa1300090:intron | 25.0% |
| ! | GTGAAAAATAAATGAAGACA+AGG | + | chr8_3:61506458-61506477 | None:intergenic | 25.0% |
| ! | TGACAAATCATAAATGTAAC+AGG | - | chr8_3:61506654-61506673 | Msa1300090:CDS | 25.0% |
| ! | ATTATGCACAAACTAGTATT+TGG | - | chr8_3:61507114-61507133 | Msa1300090:CDS | 25.0% |
| ! | GATATATTATCTTCCAAAGA+TGG | - | chr8_3:61507255-61507274 | Msa1300090:intron | 25.0% |
| !!! | AAGACGTTTTATTTCTCAAT+AGG | - | chr8_3:61507717-61507736 | Msa1300090:CDS | 25.0% |
| ! | AAAGAATGGAATATTGTTTC+TGG | + | chr8_3:61507787-61507806 | None:intergenic | 25.0% |
| ! | CATAACAATTCAAAGAAATG+AGG | + | chr8_3:61508009-61508028 | None:intergenic | 25.0% |
| !!! | TGACAGATTTTAATAAGAAC+TGG | - | chr8_3:61508098-61508117 | Msa1300090:intron | 25.0% |
| ! | TTGAGAATAAGATGAAGTAA+AGG | - | chr8_3:61508129-61508148 | Msa1300090:intron | 25.0% |
| !!! | AGCTCCATTAGATTTTAAAA+TGG | - | chr8_3:61508206-61508225 | Msa1300090:CDS | 25.0% |
| ! | ATTCATACAATAAGATTGGA+GGG | + | chr8_3:61508558-61508577 | None:intergenic | 25.0% |
| ! | TCACATTCATACAATAAGAT+TGG | + | chr8_3:61508562-61508581 | None:intergenic | 25.0% |
| ! | ATCTTATTGTATGAATGTGA+TGG | - | chr8_3:61508562-61508581 | Msa1300090:intron | 25.0% |
| ! | TAGGATAATGATTATTGTAC+GGG | - | chr8_3:61508721-61508740 | Msa1300090:intron | 25.0% |
| ! | GATATAAATAACAGGTGAAA+TGG | - | chr8_3:61508927-61508946 | Msa1300090:intron | 25.0% |
| ! | ATCAATTTGTAGAAGATCAA+GGG | + | chr8_3:61509191-61509210 | None:intergenic | 25.0% |
| !! | CATTACAGTACTATTTTGTT+AGG | + | chr8_3:61509309-61509328 | None:intergenic | 25.0% |
| ! | TACATAAAGCAATATGTTGT+AGG | - | chr8_3:61509376-61509395 | Msa1300090:CDS | 25.0% |
| ! | TAATCATATGAAGAGAAACA+AGG | + | chr8_3:61509518-61509537 | None:intergenic | 25.0% |
| ! | CTAGATAACAAATTAAAGGT+GGG | + | chr8_3:61509628-61509647 | None:intergenic | 25.0% |
| ! | TCTAGATAACAAATTAAAGG+TGG | + | chr8_3:61509629-61509648 | None:intergenic | 25.0% |
| ! | CACTCTAGATAACAAATTAA+AGG | + | chr8_3:61509632-61509651 | None:intergenic | 25.0% |
| ! | TTACCAAATAGAAGCTATTA+AGG | - | chr8_3:61509657-61509676 | Msa1300090:intron | 25.0% |
| !! | GTGTCATAAATGAATGTTTT+TGG | - | chr8_3:61509840-61509859 | Msa1300090:intron | 25.0% |
| ! | TAAAGTTGAAATGCAAAAAC+TGG | + | chr8_3:61509935-61509954 | None:intergenic | 25.0% |
| !! | AGCAATTTTATGTAATAGCT+CGG | + | chr8_3:61510093-61510112 | None:intergenic | 25.0% |
| ! | CTCAAAAAATCATTCATAAG+CGG | + | chr8_3:61510126-61510145 | None:intergenic | 25.0% |
| !!! | GCTATTTTGTCTAAATACTA+AGG | - | chr8_3:61510247-61510266 | Msa1300090:five_prime_UTR | 25.0% |
| ! | ACATGAAAAATATTGAAGCT+AGG | - | chr8_3:61510353-61510372 | Msa1300090:five_prime_UTR | 25.0% |
| TCAAATTATCATGACAACCT+GGG | + | chr8_3:61505749-61505768 | None:intergenic | 30.0% | |
| ! | TTCCTACTTACGTTCTAAAT+CGG | + | chr8_3:61505794-61505813 | None:intergenic | 30.0% |
| TAAGTAGGAACAAAGAAATG+CGG | - | chr8_3:61505804-61505823 | Msa1300090:three_prime_UTR | 30.0% | |
| TATCTCAATGTCTTCGTTAT+CGG | - | chr8_3:61505963-61505982 | Msa1300090:three_prime_UTR | 30.0% | |
| ACAATGATCCATTTATACAG+AGG | + | chr8_3:61506031-61506050 | None:intergenic | 30.0% | |
| !! | TGACTGTTGATTCAAATTGT+AGG | - | chr8_3:61506097-61506116 | Msa1300090:CDS | 30.0% |
| TAGTTAGTATGAAAATGGGT+TGG | - | chr8_3:61506560-61506579 | Msa1300090:intron | 30.0% | |
| ! | AGTTAGTATGAAAATGGGTT+GGG | - | chr8_3:61506561-61506580 | Msa1300090:intron | 30.0% |
| ACGAGCAATAGAAAAACAAA+AGG | + | chr8_3:61506687-61506706 | None:intergenic | 30.0% | |
| ! | TTTTTCTATTGCTCGTGATT+GGG | - | chr8_3:61506691-61506710 | Msa1300090:CDS | 30.0% |
| CAGATGTAAAGTAATGAGAA+AGG | + | chr8_3:61506893-61506912 | None:intergenic | 30.0% | |
| !! | TGTGGTGTCAATAGTTTTTA+AGG | - | chr8_3:61506946-61506965 | Msa1300090:intron | 30.0% |
| ATATTGAGCTAATCAGTGTA+TGG | + | chr8_3:61507007-61507026 | None:intergenic | 30.0% | |
| !! | ATTGACGTCATTTTCAACTT+TGG | - | chr8_3:61507155-61507174 | Msa1300090:CDS | 30.0% |
| ACATATAAGAACACCATCTT+TGG | + | chr8_3:61507271-61507290 | None:intergenic | 30.0% | |
| AAAAGAACATATGAAGTCGA+AGG | - | chr8_3:61507354-61507373 | Msa1300090:intron | 30.0% | |
| AAAGAACATATGAAGTCGAA+GGG | - | chr8_3:61507355-61507374 | Msa1300090:intron | 30.0% | |
| !!! | ATTACCACTGGATTTTTTGT+CGG | - | chr8_3:61507381-61507400 | Msa1300090:intron | 30.0% |
| TACGTCTATACAAAGCAAAA+TGG | + | chr8_3:61507677-61507696 | None:intergenic | 30.0% | |
| GAAAAAACTGGATGAAAGAA+TGG | + | chr8_3:61507801-61507820 | None:intergenic | 30.0% | |
| CTTGAAAGTGATGAAAAAAC+TGG | + | chr8_3:61507813-61507832 | None:intergenic | 30.0% | |
| ! | TGCAGTTGATTTCACATTAA+AGG | - | chr8_3:61507873-61507892 | Msa1300090:intron | 30.0% |
| TTTAGGGATCAACAGTTTAA+CGG | - | chr8_3:61507931-61507950 | Msa1300090:intron | 30.0% | |
| AAAGCTACTATGAGTAGAAA+GGG | + | chr8_3:61507962-61507981 | None:intergenic | 30.0% | |
| AAAAGCTACTATGAGTAGAA+AGG | + | chr8_3:61507963-61507982 | None:intergenic | 30.0% | |
| ! | ATGAGTTTAGAAGTACAAAG+TGG | + | chr8_3:61508056-61508075 | None:intergenic | 30.0% |
| AGAATAAGATGAAGTAAAGG+TGG | - | chr8_3:61508132-61508151 | Msa1300090:intron | 30.0% | |
| CACATGTATAAGAGAAGAAA+AGG | + | chr8_3:61508182-61508201 | None:intergenic | 30.0% | |
| !! | GGTTCAATGATCATTTTTAC+TGG | - | chr8_3:61508227-61508246 | Msa1300090:CDS | 30.0% |
| AAAAACAAGTAATCAGCAGA+CGG | + | chr8_3:61508255-61508274 | None:intergenic | 30.0% | |
| TAAGTCTATTGCCTTATCTT+TGG | - | chr8_3:61508329-61508348 | Msa1300090:intron | 30.0% | |
| TGAAAGAGATTCCAAAGATA+AGG | + | chr8_3:61508343-61508362 | None:intergenic | 30.0% | |
| !! | TTATCTTTGGAATCTCTTTC+AGG | - | chr8_3:61508342-61508361 | Msa1300090:intron | 30.0% |
| !!! | AGTACTGGATTTTTTATCTC+AGG | + | chr8_3:61508441-61508460 | None:intergenic | 30.0% |
| CATTCATACAATAAGATTGG+AGG | + | chr8_3:61508559-61508578 | None:intergenic | 30.0% | |
| TATTGTATGAATGTGATGGT+TGG | - | chr8_3:61508566-61508585 | Msa1300090:intron | 30.0% | |
| !! | TCCATGAGTTGATATTGTAA+CGG | - | chr8_3:61508610-61508629 | Msa1300090:intron | 30.0% |
| CATATGCACAATAAAAATGC+TGG | + | chr8_3:61508651-61508670 | None:intergenic | 30.0% | |
| !! | TGTCACTTTAGCTTAAGTTT+AGG | - | chr8_3:61508702-61508721 | Msa1300090:intron | 30.0% |
| ! | AGCATGAAATTTAAGACCTT+TGG | + | chr8_3:61508831-61508850 | None:intergenic | 30.0% |
| TAAATAACAGGTGAAATGGT+CGG | - | chr8_3:61508931-61508950 | Msa1300090:intron | 30.0% | |
| GATATATACACAAGTGAAGT+TGG | + | chr8_3:61509070-61509089 | None:intergenic | 30.0% | |
| ! | GTGAGTAATGTATTTTACCT+TGG | - | chr8_3:61509160-61509179 | Msa1300090:intron | 30.0% |
| CATCAATTTGTAGAAGATCA+AGG | + | chr8_3:61509192-61509211 | None:intergenic | 30.0% | |
| ! | AGTACTATTTTGTTAGGCTT+TGG | + | chr8_3:61509303-61509322 | None:intergenic | 30.0% |
| ATGATTATGTGCAGTCATAT+TGG | - | chr8_3:61509326-61509345 | Msa1300090:CDS | 30.0% | |
| TGATTATGTGCAGTCATATT+GGG | - | chr8_3:61509327-61509346 | Msa1300090:CDS | 30.0% | |
| CATATTGCTTTATGTAGTCT+AGG | + | chr8_3:61509372-61509391 | None:intergenic | 30.0% | |
| AAGCAATATGTTGTAGGAAT+TGG | - | chr8_3:61509382-61509401 | Msa1300090:CDS | 30.0% | |
| AGGCGTAATATCATTCATAA+CGG | - | chr8_3:61509677-61509696 | Msa1300090:intron | 30.0% | |
| TGATTACTGGATCAACAAAA+TGG | - | chr8_3:61509977-61509996 | Msa1300090:intron | 30.0% | |
| GATTACTGGATCAACAAAAT+GGG | - | chr8_3:61509978-61509997 | Msa1300090:intron | 30.0% | |
| ATCAACAAAATGGGAATTGA+TGG | - | chr8_3:61509987-61510006 | Msa1300090:intron | 30.0% | |
| ! | TGGTAGTCTTCATAATTTTC+AGG | - | chr8_3:61510028-61510047 | Msa1300090:intron | 30.0% |
| !! | GTCTTCATAATTTTCAGGAA+TGG | - | chr8_3:61510033-61510052 | Msa1300090:intron | 30.0% |
| !!! | CGCTTATGAATGATTTTTTG+AGG | - | chr8_3:61510124-61510143 | Msa1300090:intron | 30.0% |
| ! | GTAAAAAAAAAGCATGTGCT+TGG | - | chr8_3:61510160-61510179 | Msa1300090:five_prime_UTR | 30.0% |
| CTCAAATTATCATGACAACC+TGG | + | chr8_3:61505750-61505769 | None:intergenic | 35.0% | |
| ! | AACCGATTTAGAACGTAAGT+AGG | - | chr8_3:61505789-61505808 | Msa1300090:three_prime_UTR | 35.0% |
| AAGTAGGAACAAAGAAATGC+GGG | - | chr8_3:61505805-61505824 | Msa1300090:three_prime_UTR | 35.0% | |
| ATCTCAATGTCTTCGTTATC+GGG | - | chr8_3:61505964-61505983 | Msa1300090:three_prime_UTR | 35.0% | |
| !! | GAAAATTGAAGCAAGTTGGT+TGG | + | chr8_3:61506059-61506078 | None:intergenic | 35.0% |
| ATAGATAGATTAAGTGGCCA+AGG | - | chr8_3:61506176-61506195 | Msa1300090:CDS | 35.0% | |
| TAGATAGATTAAGTGGCCAA+GGG | - | chr8_3:61506177-61506196 | Msa1300090:CDS | 35.0% | |
| AATGAAAATTGGGTTTCCCT+TGG | + | chr8_3:61506196-61506215 | None:intergenic | 35.0% | |
| ! | AGAAACATTTGAAGGCATGA+AGG | + | chr8_3:61506324-61506343 | None:intergenic | 35.0% |
| ! | TCTTTTCATGAATCCCTAAC+TGG | - | chr8_3:61506343-61506362 | Msa1300090:intron | 35.0% |
| ACACAGATCTAATCCAGTTA+GGG | + | chr8_3:61506359-61506378 | None:intergenic | 35.0% | |
| AGCATGAGATGATATACCAA+TGG | + | chr8_3:61506382-61506401 | None:intergenic | 35.0% | |
| CAGTTAGAGTTACTGATGAT+CGG | + | chr8_3:61506516-61506535 | None:intergenic | 35.0% | |
| ! | TAACTCTAACTGGCTTATCA+GGG | - | chr8_3:61506524-61506543 | Msa1300090:intron | 35.0% |
| CAGCTAAATATCTCCAAACT+TGG | - | chr8_3:61506629-61506648 | Msa1300090:intron | 35.0% | |
| ! | ATGATTTGTCACACCAAGTT+TGG | + | chr8_3:61506645-61506664 | None:intergenic | 35.0% |
| ! | GTTTTTCTATTGCTCGTGAT+TGG | - | chr8_3:61506690-61506709 | Msa1300090:CDS | 35.0% |
| ! | TTTTCTATTGCTCGTGATTG+GGG | - | chr8_3:61506692-61506711 | Msa1300090:CDS | 35.0% |
| ! | ATTTTGCCAGAAGAGTTATG+TGG | + | chr8_3:61506864-61506883 | None:intergenic | 35.0% |
| GTTTGTGCATAATTGTAGCA+TGG | + | chr8_3:61507107-61507126 | None:intergenic | 35.0% | |
| AACTAGTATTTGGTACGATG+CGG | - | chr8_3:61507124-61507143 | Msa1300090:CDS | 35.0% | |
| !!! | TTTTTTGCAGAGAGCTATTG+AGG | - | chr8_3:61507209-61507228 | Msa1300090:intron | 35.0% |
| TATTATCAAGAGTAACGTCG+TGG | + | chr8_3:61507296-61507315 | None:intergenic | 35.0% | |
| AAGAACATATGAAGTCGAAG+GGG | - | chr8_3:61507356-61507375 | Msa1300090:intron | 35.0% | |
| ! | CCTCCCAATATATTTTACGA+AGG | + | chr8_3:61507445-61507464 | None:intergenic | 35.0% |
| CCTTCGTAAAATATATTGGG+AGG | - | chr8_3:61507442-61507461 | Msa1300090:intron | 35.0% | |
| ! | ACTTTTATTGAACGTCCTCT+TGG | - | chr8_3:61507574-61507593 | Msa1300090:intron | 35.0% |
| ! | CTTTTATTGAACGTCCTCTT+GGG | - | chr8_3:61507575-61507594 | Msa1300090:intron | 35.0% |
| !! | AATTTGTTAAGATGCCCAAG+AGG | + | chr8_3:61507592-61507611 | None:intergenic | 35.0% |
| CTTGGGCATCTTAACAAATT+TGG | - | chr8_3:61507592-61507611 | Msa1300090:intron | 35.0% | |
| TAAAGGAATTAAAGTCGCTG+AGG | - | chr8_3:61507890-61507909 | Msa1300090:intron | 35.0% | |
| AAAGGAATTAAAGTCGCTGA+GGG | - | chr8_3:61507891-61507910 | Msa1300090:intron | 35.0% | |
| AGGTGGAAATATCCTTTACA+AGG | - | chr8_3:61508149-61508168 | Msa1300090:intron | 35.0% | |
| !! | AAAGGAGAGTATCCTTGTAA+AGG | + | chr8_3:61508164-61508183 | None:intergenic | 35.0% |
| TAGACTTAGCCATTTCAATG+CGG | + | chr8_3:61508317-61508336 | None:intergenic | 35.0% | |
| AGAGTTCATTACCATAGCAT+TGG | - | chr8_3:61508389-61508408 | Msa1300090:intron | 35.0% | |
| GGATATATTCCAACAACTCT+GGG | + | chr8_3:61508420-61508439 | None:intergenic | 35.0% | |
| AGGATATATTCCAACAACTC+TGG | + | chr8_3:61508421-61508440 | None:intergenic | 35.0% | |
| ! | ACATGCTGATTGATAAGTAC+TGG | + | chr8_3:61508456-61508475 | None:intergenic | 35.0% |
| GAATCCAATAAACTTCTGTC+TGG | - | chr8_3:61508491-61508510 | Msa1300090:intron | 35.0% | |
| TCCGTTACAATATCAACTCA+TGG | + | chr8_3:61508614-61508633 | None:intergenic | 35.0% | |
| TTTGGAAGTTTCGAAAGATC+CGG | - | chr8_3:61508761-61508780 | Msa1300090:CDS | 35.0% | |
| AATCCTCTCTTAGTACAATC+CGG | + | chr8_3:61508783-61508802 | None:intergenic | 35.0% | |
| ! | TTTGGAATAAACATTCCAGC+AGG | + | chr8_3:61508813-61508832 | None:intergenic | 35.0% |
| TGCTGGAATGTTTATTCCAA+AGG | - | chr8_3:61508812-61508831 | Msa1300090:CDS | 35.0% | |
| ! | CTTTTAGTCCATTTCCTTAG+AGG | - | chr8_3:61508879-61508898 | Msa1300090:CDS | 35.0% |
| !! | ACAGGTTTGTTGAAACACTT+CGG | - | chr8_3:61508972-61508991 | Msa1300090:intron | 35.0% |
| GTTGAAACACTTCGGAAATA+TGG | - | chr8_3:61508980-61508999 | Msa1300090:intron | 35.0% | |
| ACTTCGGAAATATGGATACA+AGG | - | chr8_3:61508988-61509007 | Msa1300090:intron | 35.0% | |
| CTTCGGAAATATGGATACAA+GGG | - | chr8_3:61508989-61509008 | Msa1300090:intron | 35.0% | |
| GTTCATACCTGTCAAAACAT+TGG | - | chr8_3:61509011-61509030 | Msa1300090:intron | 35.0% | |
| !!! | GTTTCAACCAATGTTTTGAC+AGG | + | chr8_3:61509021-61509040 | None:intergenic | 35.0% |
| GCAAATGACTGTATAAATGC+AGG | + | chr8_3:61509046-61509065 | None:intergenic | 35.0% | |
| TTCAACACAAGACACTAATC+AGG | - | chr8_3:61509138-61509157 | Msa1300090:intron | 35.0% | |
| ATCACATAGTTGTTAACCAC+AGG | + | chr8_3:61509430-61509449 | None:intergenic | 35.0% | |
| !! | CCACACAATCTTTTGAAGAT+TGG | + | chr8_3:61509551-61509570 | None:intergenic | 35.0% |
| CCAATCTTCAAAAGATTGTG+TGG | - | chr8_3:61509548-61509567 | Msa1300090:intron | 35.0% | |
| ACGCCTTAATAGCTTCTATT+TGG | + | chr8_3:61509663-61509682 | None:intergenic | 35.0% | |
| TTGTGCTAAATGGCATATCA+CGG | + | chr8_3:61509726-61509745 | None:intergenic | 35.0% | |
| !! | ATGATTGTTGATGATGATGC+AGG | - | chr8_3:61509881-61509900 | Msa1300090:intron | 35.0% |
| TTCTCATTTCTGTACGTGTA+TGG | + | chr8_3:61509912-61509931 | None:intergenic | 35.0% | |
| CTTTAGTCAAGATCCTTACA+AGG | - | chr8_3:61509950-61509969 | Msa1300090:intron | 35.0% | |
| CAGTAATCATACTCCTTGTA+AGG | + | chr8_3:61509966-61509985 | None:intergenic | 35.0% | |
| ! | CTTACAAGGAGTATGATTAC+TGG | - | chr8_3:61509964-61509983 | Msa1300090:intron | 35.0% |
| TACCAGTGAAATCTGTAAAC+AGG | + | chr8_3:61510013-61510032 | None:intergenic | 35.0% | |
| !!! | TGATTTTTTGAGGTGTCAGA+TGG | - | chr8_3:61510134-61510153 | Msa1300090:intron | 35.0% |
| CATGACAACCTGGGAAAAAA+AGG | + | chr8_3:61505740-61505759 | None:intergenic | 40.0% | |
| AGTAGGAACAAAGAAATGCG+GGG | - | chr8_3:61505806-61505825 | Msa1300090:three_prime_UTR | 40.0% | |
| ATTAAAGTCGTTGTTTGCCG+CGG | + | chr8_3:61505856-61505875 | None:intergenic | 40.0% | |
| GTATCGTAGGAACGTGAAAA+TGG | + | chr8_3:61505885-61505904 | None:intergenic | 40.0% | |
| TTGAGTCTTCTTCGTATCGT+AGG | + | chr8_3:61505898-61505917 | None:intergenic | 40.0% | |
| !! | ATTGAAGCAAGTTGGTTGGT+TGG | + | chr8_3:61506055-61506074 | None:intergenic | 40.0% |
| GACACAGATCTAATCCAGTT+AGG | + | chr8_3:61506360-61506379 | None:intergenic | 40.0% | |
| ! | TGGATTAGATCTGTGTCCAT+TGG | - | chr8_3:61506363-61506382 | Msa1300090:intron | 40.0% |
| CGATCATCAGTAACTCTAAC+TGG | - | chr8_3:61506514-61506533 | Msa1300090:intron | 40.0% | |
| ! | GTAACTCTAACTGGCTTATC+AGG | - | chr8_3:61506523-61506542 | Msa1300090:intron | 40.0% |
| !! | AGTATGAAAATGGGTTGGGT+TGG | - | chr8_3:61506565-61506584 | Msa1300090:intron | 40.0% |
| TTTCTATTGCTCGTGATTGG+GGG | - | chr8_3:61506693-61506712 | Msa1300090:CDS | 40.0% | |
| TATGGGCGAAAAGTTTGAAG+AGG | + | chr8_3:61506774-61506793 | None:intergenic | 40.0% | |
| CCCTATGTGCAACGTTATAT+GGG | + | chr8_3:61506791-61506810 | None:intergenic | 40.0% | |
| CCCATATAACGTTGCACATA+GGG | - | chr8_3:61506788-61506807 | Msa1300090:intron | 40.0% | |
| CCATATAACGTTGCACATAG+GGG | - | chr8_3:61506789-61506808 | Msa1300090:intron | 40.0% | |
| GTGAATCCACATAACTCTTC+TGG | - | chr8_3:61506855-61506874 | Msa1300090:intron | 40.0% | |
| !!! | AATAGTTTTTAAGGTGCCCG+TGG | - | chr8_3:61506955-61506974 | Msa1300090:intron | 40.0% |
| GCTAATCAGTGTATGGTCAA+TGG | + | chr8_3:61507000-61507019 | None:intergenic | 40.0% | |
| !! | AGTACCGACAAAAAATCCAG+TGG | + | chr8_3:61507388-61507407 | None:intergenic | 40.0% |
| !! | ATTTCTAGTGACGCCTATTC+TGG | - | chr8_3:61507524-61507543 | Msa1300090:intron | 40.0% |
| ! | ATGAGCTGACTTTCCAGAAT+AGG | + | chr8_3:61507540-61507559 | None:intergenic | 40.0% |
| TGAATCAGAGGTTCAGCTTT+AGG | - | chr8_3:61507914-61507933 | Msa1300090:intron | 40.0% | |
| GAATCAGAGGTTCAGCTTTA+GGG | - | chr8_3:61507915-61507934 | Msa1300090:intron | 40.0% | |
| AGACTTAGCCATTTCAATGC+GGG | + | chr8_3:61508316-61508335 | None:intergenic | 40.0% | |
| TCTGCCAGACAGAAGTTTAT+TGG | + | chr8_3:61508498-61508517 | None:intergenic | 40.0% | |
| ! | AGAGGATTTTTATCACCTGC+TGG | - | chr8_3:61508795-61508814 | Msa1300090:CDS | 40.0% |
| ATGTTGTAGGAATTGGACCT+TGG | - | chr8_3:61509389-61509408 | Msa1300090:CDS | 40.0% | |
| GGTACTATAGTATCCTTCCA+AGG | + | chr8_3:61509409-61509428 | None:intergenic | 40.0% | |
| GAAGGATACTATAGTACCTG+TGG | - | chr8_3:61509411-61509430 | Msa1300090:CDS | 40.0% | |
| CAACTATGTGATGACTCCTT+CGG | - | chr8_3:61509438-61509457 | Msa1300090:intron | 40.0% | |
| TGGCAACACTTTGTGCTAAA+TGG | + | chr8_3:61509736-61509755 | None:intergenic | 40.0% | |
| !! | CACAAAGTGTTGCCAAATAG+TGG | - | chr8_3:61509741-61509760 | Msa1300090:intron | 40.0% |
| ! | GAGCAAACCAGTATTTTCTG+CGG | - | chr8_3:61509793-61509812 | Msa1300090:intron | 40.0% |
| TATTGGACCGCAGAAAATAC+TGG | + | chr8_3:61509803-61509822 | None:intergenic | 40.0% | |
| TCGAGCAGTGTTGTCAATAT+TGG | + | chr8_3:61509820-61509839 | None:intergenic | 40.0% | |
| TCTTGTCATCTTGACGGTTA+GGG | + | chr8_3:61510064-61510083 | None:intergenic | 40.0% | |
| ! | ATGCAGTCTTGTCATCTTGA+CGG | + | chr8_3:61510070-61510089 | None:intergenic | 40.0% |
| TTGAAGCTAGGATTACTGAG+TGG | - | chr8_3:61510365-61510384 | Msa1300090:five_prime_UTR | 40.0% | |
| TGAAGCTAGGATTACTGAGT+GGG | - | chr8_3:61510366-61510385 | Msa1300090:five_prime_UTR | 40.0% | |
| ATGCGGGGAATATTCGTTTG+TGG | - | chr8_3:61505821-61505840 | Msa1300090:three_prime_UTR | 45.0% | |
| ATGTGTTGTGTTCGTCACTC+AGG | + | chr8_3:61505927-61505946 | None:intergenic | 45.0% | |
| TTGCCAGGAAGTGGATACAA+AGG | + | chr8_3:61506729-61506748 | None:intergenic | 45.0% | |
| TTGTATCCACTTCCTGGCAA+AGG | - | chr8_3:61506729-61506748 | Msa1300090:CDS | 45.0% | |
| GCCCATATAACGTTGCACAT+AGG | - | chr8_3:61506787-61506806 | Msa1300090:intron | 45.0% | |
| CCCCTATGTGCAACGTTATA+TGG | + | chr8_3:61506792-61506811 | None:intergenic | 45.0% | |
| ATATGCAGCACAGTGAACCA+CGG | + | chr8_3:61506975-61506994 | None:intergenic | 45.0% | |
| TTGCAGAGAGCTATTGAGGA+AGG | - | chr8_3:61507213-61507232 | Msa1300090:intron | 45.0% | |
| TACTTTGGCCCGCATTGAAA+TGG | - | chr8_3:61508305-61508324 | Msa1300090:intron | 45.0% | |
| ! | ATGAATGTGATGGTTGGTGC+TGG | - | chr8_3:61508572-61508591 | Msa1300090:intron | 45.0% |
| GATCCGGATTGTACTAAGAG+AGG | - | chr8_3:61508777-61508796 | Msa1300090:CDS | 45.0% | |
| AAGAAAGCAGACAGCCTCTA+AGG | + | chr8_3:61508896-61508915 | None:intergenic | 45.0% | |
| TAACAGGTGAAATGGTCGGA+CGG | - | chr8_3:61508935-61508954 | Msa1300090:intron | 45.0% | |
| GAAGATCAAGGGATAAGCCA+AGG | + | chr8_3:61509180-61509199 | None:intergenic | 45.0% | |
| TGTAGGAATTGGACCTTGGA+AGG | - | chr8_3:61509393-61509412 | Msa1300090:CDS | 45.0% | |
| GGCCTGTTTACAGATTTCAC+TGG | - | chr8_3:61510008-61510027 | Msa1300090:intron | 45.0% | |
| CTTGTCATCTTGACGGTTAG+GGG | + | chr8_3:61510063-61510082 | None:intergenic | 45.0% | |
| GTCTTGTCATCTTGACGGTT+AGG | + | chr8_3:61510065-61510084 | None:intergenic | 45.0% | |
| !!! | ACATTTTTAAAAATATAATT+TGG | + | chr8_3:61506929-61506948 | None:intergenic | 5.0% |
| !!! | AAATTATATTTTTAAAAATG+TGG | - | chr8_3:61506928-61506947 | Msa1300090:intron | 5.0% |
| GTTTGTGGACCCTATTTCCG+CGG | - | chr8_3:61505836-61505855 | Msa1300090:three_prime_UTR | 50.0% | |
| CGTTGTTTGCCGCGGAAATA+GGG | + | chr8_3:61505848-61505867 | None:intergenic | 50.0% | |
| TCGTTGTTTGCCGCGGAAAT+AGG | + | chr8_3:61505849-61505868 | None:intergenic | 50.0% | |
| AGGCCTTTGTATCCACTTCC+TGG | - | chr8_3:61506723-61506742 | Msa1300090:CDS | 50.0% | |
| GAAGAGGCTGCTTACTTCCA+TGG | + | chr8_3:61506758-61506777 | None:intergenic | 50.0% | |
| GTTGCACATAGGGGCTCAAA+TGG | - | chr8_3:61506798-61506817 | Msa1300090:intron | 50.0% | |
| ACTTCCTGAAGAAACTCGCG+AGG | - | chr8_3:61506824-61506843 | Msa1300090:intron | 50.0% | |
| TATGCCTCGCGAGTTTCTTC+AGG | + | chr8_3:61506831-61506850 | None:intergenic | 50.0% | |
| AGAAACTCGCGAGGCATATC+TGG | - | chr8_3:61506833-61506852 | Msa1300090:intron | 50.0% | |
| TATGCAGCACAGTGAACCAC+GGG | + | chr8_3:61506974-61506993 | None:intergenic | 50.0% | |
| TCTGGGTGCATCCAATGCTA+TGG | + | chr8_3:61508403-61508422 | None:intergenic | 50.0% | |
| TTGGATGCACCCAGAGTTGT+TGG | - | chr8_3:61508408-61508427 | Msa1300090:intron | 50.0% | |
| ! | GCAGACAGCCTCTAAGGAAA+TGG | + | chr8_3:61508890-61508909 | None:intergenic | 50.0% |
| ACGGCAAACGATTTGAGGAC+AGG | - | chr8_3:61508954-61508973 | Msa1300090:intron | 50.0% | |
| TCCTTCGGATCTTGTTGCCA+GGG | - | chr8_3:61509453-61509472 | Msa1300090:intron | 50.0% | |
| CAGATTATGAGCATGTGCCC+TGG | + | chr8_3:61509473-61509492 | None:intergenic | 50.0% | |
| GGCACATGCTCATAATCTGC+AGG | - | chr8_3:61509474-61509493 | Msa1300090:intron | 50.0% | |
| ! | AGTGCTGTTGCGCCACTATT+TGG | + | chr8_3:61509756-61509775 | None:intergenic | 50.0% |
| ATTGCTCGTGATTGGGGGCA+CGG | - | chr8_3:61506698-61506717 | Msa1300090:CDS | 55.0% | |
| TGGTCACCTTTGCCAGGAAG+TGG | + | chr8_3:61506738-61506757 | None:intergenic | 55.0% | |
| CTTCCTGGCAAAGGTGACCA+TGG | - | chr8_3:61506738-61506757 | Msa1300090:CDS | 55.0% | |
| CTTCCATGGTCACCTTTGCC+AGG | + | chr8_3:61506744-61506763 | None:intergenic | 55.0% | |
| GTCGAAGGGGTCATTACCAC+TGG | - | chr8_3:61507369-61507388 | Msa1300090:intron | 55.0% | |
| AGTCGCTGAGGGTGAATCAG+AGG | - | chr8_3:61507902-61507921 | Msa1300090:intron | 55.0% | |
| GTCGGACGGCAAACGATTTG+AGG | - | chr8_3:61508949-61508968 | Msa1300090:intron | 55.0% | |
| CTCCTTCGGATCTTGTTGCC+AGG | - | chr8_3:61509452-61509471 | Msa1300090:intron | 55.0% | |
| GCCCTGGCAACAAGATCCGA+AGG | + | chr8_3:61509457-61509476 | None:intergenic | 60.0% | |
| GGCGCAACAGCACTGTAGCA+TGG | - | chr8_3:61509762-61509781 | Msa1300090:intron | 60.0% | |
| ! | TCGTGATTGGGGGCACGGCT+AGG | - | chr8_3:61506703-61506722 | Msa1300090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 61505732 | 61510394 | 61505732 | ID=Msa1300090;Name=Msa1300090 |
| chr8_3 | mRNA | 61505732 | 61510394 | 61505732 | ID=Msa1300090-mRNA-1;Parent=Msa1300090;Name=Msa1300090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=238|1|1|1|0.85|0.87|8|258|390 |
| chr8_3 | exon | 61505732 | 61506223 | 61505732 | ID=Msa1300090-mRNA-1:exon:18170;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61506631 | 61506786 | 61506631 | ID=Msa1300090-mRNA-1:exon:18169;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61506967 | 61507185 | 61506967 | ID=Msa1300090-mRNA-1:exon:18168;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61507653 | 61507762 | 61507653 | ID=Msa1300090-mRNA-1:exon:18167;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61508174 | 61508248 | 61508174 | ID=Msa1300090-mRNA-1:exon:18166;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61508724 | 61508907 | 61508724 | ID=Msa1300090-mRNA-1:exon:18165;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61509272 | 61509450 | 61509272 | ID=Msa1300090-mRNA-1:exon:18164;Parent=Msa1300090-mRNA-1 |
| chr8_3 | exon | 61510141 | 61510394 | 61510141 | ID=Msa1300090-mRNA-1:exon:18163;Parent=Msa1300090-mRNA-1 |
| chr8_3 | five_prime_UTR | 61510157 | 61510394 | 61510157 | ID=Msa1300090-mRNA-1:five_prime_utr;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61510141 | 61510156 | 61510141 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61509272 | 61509450 | 61509272 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61508724 | 61508907 | 61508724 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61508174 | 61508248 | 61508174 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61507653 | 61507762 | 61507653 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61506967 | 61507185 | 61506967 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61506631 | 61506786 | 61506631 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | CDS | 61505990 | 61506223 | 61505990 | ID=Msa1300090-mRNA-1:cds;Parent=Msa1300090-mRNA-1 |
| chr8_3 | three_prime_UTR | 61505732 | 61505989 | 61505732 | ID=Msa1300090-mRNA-1:three_prime_utr;Parent=Msa1300090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
