AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576120 MtrunA17_Chr8g0393311 91.422 408 15 2 1 408 1 388 0.0 752
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576120 AT1G48420.1 66.334 401 115 2 8 408 21 401 0.0 535
Msa0576120 AT1G48420.2 66.334 401 115 2 8 408 21 401 0.0 535
Msa0576120 AT1G48420.3 66.334 401 115 2 8 408 21 401 0.0 535

Find 133 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAATTTAAATCATATTA+TGG 0.129697 4_1:+80185923 None:intergenic
TTCCTTCCTTCCCATTTCTT+TGG 0.168403 4_1:+80186307 None:intergenic
CTGAAGCGCGACGATCTTTC+TGG 0.194591 4_1:-80193888 Msa0576120:CDS
TACTATAATTTATATTAAAA+AGG 0.198650 4_1:+80185739 None:intergenic
AATTTGTGAATATTCTTCTT+TGG 0.263261 4_1:+80193608 None:intergenic
AGACATAAATGCAAACAATA+AGG 0.291586 4_1:+80186129 None:intergenic
AAAGAAGAATATTCACAAAT+TGG 0.296772 4_1:-80193606 Msa0576120:CDS
TTATGAGAATTGATGTAATA+AGG 0.298430 4_1:+80185989 None:intergenic
GTACATACAGGTGGCCTCTT+AGG 0.303821 4_1:-80186274 Msa0576120:CDS
TGGGTTCCTTTGTGGGGAAT+TGG 0.314828 4_1:-80186228 Msa0576120:CDS
GCTGATTCTGTTATTACAAT+TGG 0.315186 4_1:-80193798 Msa0576120:CDS
GCTTAGAAGTGCGGAGTATA+AGG 0.324616 4_1:+80193709 None:intergenic
TGGAAACAAAGTGCGGAAAT+TGG 0.338825 4_1:-80193853 Msa0576120:CDS
CACAATTGCCGGTTTAGCAC+TGG 0.344641 4_1:-80188427 Msa0576120:CDS
CTTCTTGTTGAGCGTTTGAT+TGG 0.348706 4_1:-80193651 Msa0576120:CDS
GGGGCTACATAGAGGCAGTT+AGG 0.350018 4_1:-80188874 Msa0576120:CDS
AGCCACACTTCTGTATTTGC+TGG 0.350872 4_1:+80193909 None:intergenic
GATCAGCTGGGTTCCTTTGT+GGG 0.353254 4_1:-80186235 Msa0576120:CDS
TGAATGAAAATCCAAAGAAA+TGG 0.354272 4_1:-80186318 Msa0576120:CDS
TCTAATTTAAATCATATTAT+GGG 0.355294 4_1:+80185924 None:intergenic
CTTTCCAATTCCATCTTGCC+TGG 0.356939 4_1:+80186177 None:intergenic
CGATCAGCTGGGTTCCTTTG+TGG 0.368488 4_1:-80186236 Msa0576120:CDS
TAAATTAGAGATTTAATCCT+AGG 0.373773 4_1:-80185910 Msa0576120:three_prime_UTR
TGCTTACAGGCCAAGGGTCT+TGG 0.379002 4_1:-80187941 Msa0576120:intron
AGATTGAGACTTAAACCTTC+AGG 0.397047 4_1:+80185849 None:intergenic
TGCCAGTGAGGGTGGGATCT+TGG 0.400276 4_1:+80193676 None:intergenic
GTTCCCAGGCAAGATGGAAT+TGG 0.402849 4_1:-80186181 Msa0576120:CDS
GCGGAAATTGGAGTTCTTGA+TGG 0.407020 4_1:-80193841 Msa0576120:CDS
TCTGTATTTGCTGGCAGGTT+CGG 0.409436 4_1:+80193918 None:intergenic
ACAAAGTTGTGGAAGTAATC+CGG 0.413991 4_1:+80188272 None:intergenic
GACATAAATGCAAACAATAA+GGG 0.416132 4_1:+80186130 None:intergenic
TGATGAACCCAGTGCTAAAC+CGG 0.425541 4_1:+80188419 None:intergenic
TACTTCCACAACTTTGTTCA+AGG 0.425604 4_1:-80188266 Msa0576120:CDS
TATGAGAAGGTATGGGGTCT+AGG 0.430799 4_1:+80193988 None:intergenic
GTTCTTTCTCTTTCACCTGA+AGG 0.443293 4_1:-80185864 Msa0576120:three_prime_UTR
AGATACAATATGAGAAGGTA+TGG 0.444228 4_1:+80193980 None:intergenic
GGGCTACATAGAGGCAGTTA+GGG 0.449619 4_1:-80188873 Msa0576120:CDS
TAACATATGGCCTCCTCCCT+TGG 0.451715 4_1:+80193454 None:intergenic
CTTCTTTGGATATAAGTTGA+AGG 0.456772 4_1:+80193622 None:intergenic
ACAATTGCCGGTTTAGCACT+GGG 0.459037 4_1:-80188426 Msa0576120:CDS
AGAGAGTTTGATCCGCCAAC+AGG 0.462134 4_1:+80193428 None:intergenic
TTTGTTCAAGGCTTGCTTGA+CGG 0.462516 4_1:-80188254 Msa0576120:CDS
ACACTTCTGTATTTGCTGGC+AGG 0.463369 4_1:+80193913 None:intergenic
TGTGAATCGGAGTCGGAAGA+TGG 0.463540 4_1:+80193952 None:intergenic
TTGTTCTTGACCCGGTATAC+AGG 0.463568 4_1:-80187856 Msa0576120:intron
TCGAATAAATACCTGTATAC+CGG 0.463817 4_1:+80187845 None:intergenic
GTATGACAAGGTCGATCAGC+TGG 0.464943 4_1:-80186248 Msa0576120:CDS
AGCCATACACAGCTCCTTCA+TGG 0.465709 4_1:-80194019 Msa0576120:CDS
CGCCAACAGGAAATAACATA+TGG 0.468965 4_1:+80193441 None:intergenic
GAATGAAAATCCAAAGAAAT+GGG 0.478205 4_1:-80186317 Msa0576120:CDS
AGTTTATCATGTAAAATCCT+AGG 0.487547 4_1:+80185893 None:intergenic
GACCAAGATCCCACCCTCAC+TGG 0.487961 4_1:-80193678 Msa0576120:CDS
ATATTGTTGTGGCTTGTGGC+AGG 0.488200 4_1:-80188802 Msa0576120:intron
AAAGAAGTTGCTGAAGCTAC+AGG 0.491243 4_1:-80187881 Msa0576120:CDS
GATTCTGTTATTACAATTGG+AGG 0.492732 4_1:-80193795 Msa0576120:CDS
AGAAGGTATGGGGTCTAGGT+AGG 0.496529 4_1:+80193992 None:intergenic
TTTATTCCTTCTCAGCGGTA+AGG 0.497920 4_1:-80186365 Msa0576120:intron
GGCCATATGTTATTTCCTGT+TGG 0.501452 4_1:-80193443 Msa0576120:CDS
AAGATCCTCTTCGTACATAC+AGG 0.505875 4_1:-80186286 Msa0576120:CDS
CATTGCATAGCCAAGACCCT+TGG 0.507444 4_1:+80187931 None:intergenic
TCTCATACTATACATCCTCT+TGG 0.507451 4_1:+80186088 None:intergenic
GCCCATGAAGGAGCTGTGTA+TGG 0.513916 4_1:+80194017 None:intergenic
GGAAGCTTCCATCTGTGAAT+CGG 0.515135 4_1:+80193939 None:intergenic
CAAGTCTCAACAGTGATGGC+GGG 0.516623 4_1:-80194062 Msa0576120:CDS
ATCCAAAGAAATGGGAAGGA+AGG 0.517188 4_1:-80186309 Msa0576120:CDS
CATATGTTATTTCCTGTTGG+CGG 0.518430 4_1:-80193440 Msa0576120:CDS
CAAAGTTGTGGAAGTAATCC+GGG 0.521477 4_1:+80188273 None:intergenic
GATACAATATGAGAAGGTAT+GGG 0.525600 4_1:+80193981 None:intergenic
GAATCTGTTCCCAGGCAAGA+TGG 0.526272 4_1:-80186187 Msa0576120:CDS
AAGAAGATTGCCAGTGAGGG+TGG 0.528089 4_1:+80193668 None:intergenic
CCTTGTCATACAATCCTAAG+AGG 0.528394 4_1:+80186260 None:intergenic
AGCTCATCAACCAAGGGAGG+AGG 0.529265 4_1:-80193464 Msa0576120:CDS
TTTCCAATTCCATCTTGCCT+GGG 0.529547 4_1:+80186178 None:intergenic
TTGCTTGACGGACTCAAAGC+TGG 0.530861 4_1:-80188242 Msa0576120:CDS
CATTGAGTAGCTTGAAAGCA+AGG 0.540202 4_1:-80188398 Msa0576120:CDS
TGTAATTGTAATGAAATGTA+TGG 0.542665 4_1:-80194098 Msa0576120:exon
TGGCACGACAGTGATTACTT+TGG 0.547420 4_1:+80193769 None:intergenic
GATGATATTGTTGTGGCTTG+TGG 0.554768 4_1:-80188806 Msa0576120:CDS
GTGAATCGGAGTCGGAAGAT+GGG 0.555114 4_1:+80193953 None:intergenic
ATTCTCCGTTTGTGATGACC+CGG 0.556941 4_1:-80188291 Msa0576120:CDS
GTAATCCGGGTCATCACAAA+CGG 0.557799 4_1:+80188286 None:intergenic
GATCAAACTCTCTCGGAACA+TGG 0.558246 4_1:-80193418 Msa0576120:intron
AAAATCTTCAACACTAAGCA+AGG 0.558475 4_1:+80191534 None:intergenic
ATCAGCTGGGTTCCTTTGTG+GGG 0.558594 4_1:-80186234 Msa0576120:CDS
CTTTCTGGAATGCAATTGAG+TGG 0.561261 4_1:-80193873 Msa0576120:CDS
CGAATAAATACCTGTATACC+GGG 0.563504 4_1:+80187846 None:intergenic
TCTACTCAGGGGCTACATAG+AGG 0.565560 4_1:-80188882 Msa0576120:intron
AACAAGAAGATTGCCAGTGA+GGG 0.566617 4_1:+80193665 None:intergenic
TACAGGTGTTGTTCTTGACC+CGG 0.568201 4_1:-80187864 Msa0576120:CDS
GCCATACACAGCTCCTTCAT+GGG 0.568763 4_1:-80194018 Msa0576120:CDS
TTCCATCTGTGAATCGGAGT+CGG 0.579716 4_1:+80193945 None:intergenic
GAAAATCCAAAGAAATGGGA+AGG 0.581955 4_1:-80186313 Msa0576120:CDS
AACGCATAACAAGTGGAAAG+AGG 0.582771 4_1:-80191504 Msa0576120:CDS
ATTATGGGAGTGATGATTGT+GGG 0.583519 4_1:+80185939 None:intergenic
TTCCGACTCCGATTCACAGA+TGG 0.583626 4_1:-80193947 Msa0576120:CDS
GCAAGTCTCAACAGTGATGG+CGG 0.587381 4_1:-80194063 Msa0576120:CDS
GCAAGCCTTGAACAAAGTTG+TGG 0.588520 4_1:+80188261 None:intergenic
TGTGGGGAATTGGCAACGAA+TGG 0.595485 4_1:-80186218 Msa0576120:CDS
GTTGGCGGATCAAACTCTCT+CGG 0.600283 4_1:-80193425 Msa0576120:CDS
TTTAACTGCTTACAGGCCAA+GGG 0.601343 4_1:-80187947 Msa0576120:intron
AGCGGATTCAGCAATTGCAT+CGG 0.601538 4_1:+80193818 None:intergenic
TCTAGGTAGGATGCCCATGA+AGG 0.602506 4_1:+80194005 None:intergenic
ATGTTAATGAATCTGTTCCC+AGG 0.603513 4_1:-80186195 Msa0576120:CDS
CAACAAGAAGATTGCCAGTG+AGG 0.606515 4_1:+80193664 None:intergenic
AAAGAAAAGCTCATCAACCA+AGG 0.607592 4_1:-80193471 Msa0576120:CDS
GAAGCAAGTCTCAACAGTGA+TGG 0.607865 4_1:-80194066 Msa0576120:CDS
AGAATTGATGTAATAAGGTG+AGG 0.614054 4_1:+80185994 None:intergenic
TAAATATATCTTGCTCCAAG+AGG 0.616763 4_1:-80186103 Msa0576120:three_prime_UTR
CAAGTTTGATGATATTGTTG+TGG 0.625508 4_1:-80188813 Msa0576120:CDS
GCAAGAGATACAATATGAGA+AGG 0.625884 4_1:+80193975 None:intergenic
TATGACAAGGTCGATCAGCT+GGG 0.626866 4_1:-80186247 Msa0576120:CDS
AGGTGAAAGAGAAAGAACCT+AGG 0.627318 4_1:+80185869 None:intergenic
AGAAGATTGCCAGTGAGGGT+GGG 0.629815 4_1:+80193669 None:intergenic
ATTCAAATACTTAGCAGCAA+CGG 0.630168 4_1:+80193743 None:intergenic
CTATGCAATGAACACTTCTG+AGG 0.630985 4_1:-80187918 Msa0576120:CDS
TATTATGGGAGTGATGATTG+TGG 0.633838 4_1:+80185938 None:intergenic
ATACTTAGCAGCAACGGCAG+TGG 0.635268 4_1:+80193749 None:intergenic
ATTGAGTAGCTTGAAAGCAA+GGG 0.638253 4_1:-80188397 Msa0576120:intron
ATTGAGCTGCAGATTCAAAG+TGG 0.643773 4_1:-80188848 Msa0576120:CDS
AAAAGCTCATCAACCAAGGG+AGG 0.644593 4_1:-80193467 Msa0576120:CDS
CAACGAGATGCTTAGAAGTG+CGG 0.644777 4_1:+80193700 None:intergenic
AAGAAAAGCTCATCAACCAA+GGG 0.645910 4_1:-80193470 Msa0576120:CDS
ATCCTCTTCGTACATACAGG+TGG 0.648696 4_1:-80186283 Msa0576120:CDS
AATTGTAATAACAGAATCAG+CGG 0.651486 4_1:+80193800 None:intergenic
CCTCTTAGGATTGTATGACA+AGG 0.657121 4_1:-80186260 Msa0576120:CDS
GAAGTGCGGAGTATAAGGAA+AGG 0.661921 4_1:+80193714 None:intergenic
AAGTCTCAACAGTGATGGCG+GGG 0.666775 4_1:-80194061 Msa0576120:CDS
GGCCACCTGTATGTACGAAG+AGG 0.673188 4_1:+80186281 None:intergenic
TGCCAGCAAATACAGAAGTG+TGG 0.675881 4_1:-80193911 Msa0576120:CDS
ATACAATATGAGAAGGTATG+GGG 0.676303 4_1:+80193982 None:intergenic
TCGTTGCCAATTCCCCACAA+AGG 0.683550 4_1:+80186222 None:intergenic
GCATAACAAGTGGAAAGAGG+AGG 0.689046 4_1:-80191501 Msa0576120:intron
AATTGAGTGGAAACAAAGTG+CGG 0.729797 4_1:-80193860 Msa0576120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAATTTTTGTATTTGAT+TGG - chr4_1:80189339-80189358 Msa0576120:intron 10.0%
!! TAATATAAAAAATCAAGATT+TGG - chr4_1:80191216-80191235 Msa0576120:intron 10.0%
!!! TTATTATTTACATTTTGTTT+AGG + chr4_1:80192572-80192591 None:intergenic 10.0%
!!! TTTTTTTGACAAAAAATTAT+AGG - chr4_1:80192744-80192763 Msa0576120:intron 10.0%
!! TCTAATTTAAATCATATTAT+GGG + chr4_1:80193909-80193928 None:intergenic 10.0%
!! AAAAAGAAAAAAAATAAAGA+AGG + chr4_1:80194054-80194073 None:intergenic 10.0%
!! AATTGAGTAAAAACTTATAT+GGG + chr4_1:80186664-80186683 None:intergenic 15.0%
!! GCATTAAAAGATAAAATTTA+AGG + chr4_1:80187057-80187076 None:intergenic 15.0%
!! ATGTATTTGAAAATTATCAA+TGG + chr4_1:80188261-80188280 None:intergenic 15.0%
!!! AATTTCAACGTTTTATAAAA+AGG + chr4_1:80189069-80189088 None:intergenic 15.0%
!! TTTGTCAAAAATAAAAATAG+TGG - chr4_1:80189282-80189301 Msa0576120:intron 15.0%
!! AATTTATATAGCTATTTAAC+CGG + chr4_1:80189528-80189547 None:intergenic 15.0%
!! TTTGAAAACATAGTAAATAA+TGG + chr4_1:80190290-80190309 None:intergenic 15.0%
!!! TTTTCGAGTATAAAAATATT+AGG + chr4_1:80190582-80190601 None:intergenic 15.0%
!!! TATTTTTATACTCGAAAAAT+TGG - chr4_1:80190584-80190603 Msa0576120:intron 15.0%
!! TTCTTTGTATTTATTGTAAT+AGG + chr4_1:80190902-80190921 None:intergenic 15.0%
!! CAATAAAATATAAACATGTA+GGG + chr4_1:80192397-80192416 None:intergenic 15.0%
!! ACAATAAAATATAAACATGT+AGG + chr4_1:80192398-80192417 None:intergenic 15.0%
!! CAAAAGAATAAAATTATAGA+AGG - chr4_1:80192694-80192713 Msa0576120:intron 15.0%
!!! ATGTTAGCTTTTTTTTTTAA+AGG - chr4_1:80192782-80192801 Msa0576120:intron 15.0%
!! ATTTCATCTATAAAGAAAAT+AGG + chr4_1:80193145-80193164 None:intergenic 15.0%
!!! TTTTTTTTTATAATAGCCAA+TGG + chr4_1:80193170-80193189 None:intergenic 15.0%
!! ACCATTAGATTAAAAATAAA+TGG - chr4_1:80193788-80193807 Msa0576120:CDS 15.0%
!!! ACCATTTATTTTTAATCTAA+TGG + chr4_1:80193792-80193811 None:intergenic 15.0%
!! CTCTAATTTAAATCATATTA+TGG + chr4_1:80193910-80193929 None:intergenic 15.0%
!! TGTAATTGTAATGAAATGTA+TGG - chr4_1:80185732-80185751 Msa0576120:three_prime_UTR 20.0%
!! AATTTGTGAATATTCTTCTT+TGG + chr4_1:80186225-80186244 None:intergenic 20.0%
!! AAAGAAGAATATTCACAAAT+TGG - chr4_1:80186224-80186243 Msa0576120:CDS 20.0%
!! AACAAGATAAAATTGAAAAG+AGG + chr4_1:80186561-80186580 None:intergenic 20.0%
!! CAATTGAGTAAAAACTTATA+TGG + chr4_1:80186665-80186684 None:intergenic 20.0%
!!! ACTTAAAACTCAATGTATTT+TGG - chr4_1:80187128-80187147 Msa0576120:intron 20.0%
!!! CACTTATCATTGTATTTTTT+AGG + chr4_1:80187357-80187376 None:intergenic 20.0%
!! ACAATTTGTAATTTGAATGA+AGG - chr4_1:80187498-80187517 Msa0576120:intron 20.0%
!! ATACCATAATAATGAATACT+TGG - chr4_1:80187572-80187591 Msa0576120:intron 20.0%
!! AGTGTAAAATACTTAAGTAT+GGG - chr4_1:80188055-80188074 Msa0576120:intron 20.0%
!!! TTGTTCGGTTTTTTTTTTTT+TGG - chr4_1:80188791-80188810 Msa0576120:intron 20.0%
!!! TTTTTTTTGGAACATAAACA+AGG - chr4_1:80188804-80188823 Msa0576120:CDS 20.0%
!!! TTTTTTTGGAACATAAACAA+GGG - chr4_1:80188805-80188824 Msa0576120:CDS 20.0%
!! TCAATAGATTAAATTTGACT+CGG - chr4_1:80189376-80189395 Msa0576120:intron 20.0%
!!! ATATTTTTTCACATGATATC+AGG + chr4_1:80190003-80190022 None:intergenic 20.0%
!!! GTTTTTAAAAGTTGATATCA+TGG + chr4_1:80190358-80190377 None:intergenic 20.0%
!! GTATAAAAATATTAGGATGT+TGG + chr4_1:80190575-80190594 None:intergenic 20.0%
!! TGATTAAATTATTCTACTCA+GGG - chr4_1:80190936-80190955 Msa0576120:intron 20.0%
!!! CATAAAATCTGCATTTTTAA+TGG - chr4_1:80192637-80192656 Msa0576120:intron 20.0%
!! AAAACGCTAGTTAAAAATAA+TGG + chr4_1:80192815-80192834 None:intergenic 20.0%
!!! ATTATTTTTAACTAGCGTTT+TGG - chr4_1:80192814-80192833 Msa0576120:intron 20.0%
!!! TTTTATATTGTTGGTATCAT+TGG + chr4_1:80193013-80193032 None:intergenic 20.0%
!!! AATTTGCTTAAGTGTATAAT+TGG - chr4_1:80193093-80193112 Msa0576120:intron 20.0%
!!! GCTTGAGATTATTTATTTTT+AGG - chr4_1:80193251-80193270 Msa0576120:intron 20.0%
!! ACTATATAAAACTTGCATTT+GGG + chr4_1:80193313-80193332 None:intergenic 20.0%
!! AACTATATAAAACTTGCATT+TGG + chr4_1:80193314-80193333 None:intergenic 20.0%
!! CCTAAATTTCTTATAAATGA+TGG + chr4_1:80193338-80193357 None:intergenic 20.0%
!! CCATCATTTATAAGAAATTT+AGG - chr4_1:80193335-80193354 Msa0576120:intron 20.0%
!!! TATTTTTAATCTAATGGTTG+AGG + chr4_1:80193786-80193805 None:intergenic 20.0%
!! TTATGAGAATTGATGTAATA+AGG + chr4_1:80193844-80193863 None:intergenic 20.0%
!! TAAATTAGAGATTTAATCCT+AGG - chr4_1:80193920-80193939 Msa0576120:CDS 20.0%
! AATTGTAATAACAGAATCAG+CGG + chr4_1:80186033-80186052 None:intergenic 25.0%
! AAAAGAGGTAAATAATGATG+TGG + chr4_1:80186546-80186565 None:intergenic 25.0%
! TCAAAATTGATGCAAAAGAA+TGG + chr4_1:80186591-80186610 None:intergenic 25.0%
!! TCAATTTTGAATTTCACTCT+AGG - chr4_1:80186601-80186620 Msa0576120:intron 25.0%
!! CAATTTTGAATTTCACTCTA+GGG - chr4_1:80186602-80186621 Msa0576120:intron 25.0%
!!! TATTATCTTTTGTTGTCTCT+GGG + chr4_1:80186804-80186823 None:intergenic 25.0%
!!! TTATTATCTTTTGTTGTCTC+TGG + chr4_1:80186805-80186824 None:intergenic 25.0%
!! AGACAAATGTGAAAACTTTT+CGG + chr4_1:80186831-80186850 None:intergenic 25.0%
!! AAAGTTTTCACATTTGTCTT+TGG - chr4_1:80186832-80186851 Msa0576120:intron 25.0%
! AGTTGCTAAAATAAGTCTTA+TGG + chr4_1:80187094-80187113 None:intergenic 25.0%
!!! ATGTATTTTGGTAAAAACGA+AGG - chr4_1:80187140-80187159 Msa0576120:intron 25.0%
!!! CGAACATATTTTTCAGAAAA+TGG - chr4_1:80187171-80187190 Msa0576120:intron 25.0%
!!! ACATATTTTTCAGAAAATGG+AGG - chr4_1:80187174-80187193 Msa0576120:intron 25.0%
! AATAGAGCTGTTAAAGAAAA+AGG + chr4_1:80187315-80187334 None:intergenic 25.0%
! TATTATGTTATTAGAGAGTG+TGG - chr4_1:80187464-80187483 Msa0576120:intron 25.0%
!! ATTATGTTATTAGAGAGTGT+GGG - chr4_1:80187465-80187484 Msa0576120:intron 25.0%
! ATTCATTATTATGGTATTGC+TGG + chr4_1:80187569-80187588 None:intergenic 25.0%
! ACTCCAAGTATTCATTATTA+TGG + chr4_1:80187578-80187597 None:intergenic 25.0%
! AAAACAATGTATATGATCAG+TGG - chr4_1:80187612-80187631 Msa0576120:intron 25.0%
! AACAAGATACAAGATACAAA+AGG - chr4_1:80187725-80187744 Msa0576120:intron 25.0%
! AATAATTCACCAAACTACAT+AGG + chr4_1:80187881-80187900 None:intergenic 25.0%
! CAGTGTAAAATACTTAAGTA+TGG - chr4_1:80188054-80188073 Msa0576120:intron 25.0%
!!! TATTCTGAGTTACTTTTTGT+GGG + chr4_1:80188483-80188502 None:intergenic 25.0%
!!! ATATTCTGAGTTACTTTTTG+TGG + chr4_1:80188484-80188503 None:intergenic 25.0%
!! AGAAAACTTGGAAAATTTTG+TGG - chr4_1:80188535-80188554 Msa0576120:intron 25.0%
!!! TACAAGCAAGTGTAATTTTT+TGG + chr4_1:80189233-80189252 None:intergenic 25.0%
! TTTAGAGAATTCAACATTGT+GGG + chr4_1:80190122-80190141 None:intergenic 25.0%
! ATTTAGAGAATTCAACATTG+TGG + chr4_1:80190123-80190142 None:intergenic 25.0%
!!! AAAAGAACCATTGATTTGAA+AGG + chr4_1:80190231-80190250 None:intergenic 25.0%
!! ATCAATGGTTCTTTTATCAA+AGG - chr4_1:80190236-80190255 Msa0576120:intron 25.0%
!! TCTTCATGTTATTTGTACTT+AGG - chr4_1:80190501-80190520 Msa0576120:intron 25.0%
!! AGCAGGATAATATTTTACTA+TGG - chr4_1:80190531-80190550 Msa0576120:intron 25.0%
! AAACATAGATTGATGCTATT+CGG + chr4_1:80190852-80190871 None:intergenic 25.0%
!! CTATGTTTCTATATTGCTAA+AGG - chr4_1:80190864-80190883 Msa0576120:intron 25.0%
! GAGTAGAATAATTTAATCAG+TGG + chr4_1:80190935-80190954 None:intergenic 25.0%
! CTGATTAAATTATTCTACTC+AGG - chr4_1:80190935-80190954 Msa0576120:intron 25.0%
! GATTAAATTATTCTACTCAG+GGG - chr4_1:80190937-80190956 Msa0576120:intron 25.0%
! TCATTGGATTCTCTTTATAT+TGG - chr4_1:80191104-80191123 Msa0576120:intron 25.0%
!!! AGCTTGTTTCTATAACTTTT+AGG - chr4_1:80191130-80191149 Msa0576120:intron 25.0%
! ATTAAATCCACACTTTCAAA+TGG + chr4_1:80191200-80191219 None:intergenic 25.0%
!! CACAAACATACAAATTTTCA+TGG + chr4_1:80191242-80191261 None:intergenic 25.0%
! ATAAGCATCATGTGAAAAAT+TGG + chr4_1:80191489-80191508 None:intergenic 25.0%
!! ATGTGAGTGTATTTCTAAAA+TGG - chr4_1:80191643-80191662 Msa0576120:intron 25.0%
! TTGTGAAAATATACACATAC+TGG - chr4_1:80191712-80191731 Msa0576120:intron 25.0%
! ATGAAAATTTAACTGCTTAC+AGG - chr4_1:80191876-80191895 Msa0576120:intron 25.0%
! AAAAGAGCAATATAGAATGT+GGG + chr4_1:80192011-80192030 None:intergenic 25.0%
!! TTTTGGATCCATTAAAACTA+CGG - chr4_1:80192027-80192046 Msa0576120:intron 25.0%
!!! TTTTTTCTTCCACAAACAAA+AGG - chr4_1:80192054-80192073 Msa0576120:intron 25.0%
! ATTAAACCATTGAGGATATA+AGG + chr4_1:80192193-80192212 None:intergenic 25.0%
!! GTTTAATCTACAGTTTTCTT+AGG - chr4_1:80192206-80192225 Msa0576120:intron 25.0%
!!! TAAACTGTGTTGATTTTTGT+GGG - chr4_1:80192301-80192320 Msa0576120:intron 25.0%
! CATTAACACAATAAGAAGAT+AGG + chr4_1:80192862-80192881 None:intergenic 25.0%
! TTTATAGATGAAATAGCCAT+TGG - chr4_1:80193151-80193170 Msa0576120:intron 25.0%
! TGAATGAAAATCCAAAGAAA+TGG - chr4_1:80193512-80193531 Msa0576120:intron 25.0%
! GAATGAAAATCCAAAGAAAT+GGG - chr4_1:80193513-80193532 Msa0576120:intron 25.0%
! GACATAAATGCAAACAATAA+GGG + chr4_1:80193703-80193722 None:intergenic 25.0%
! AGACATAAATGCAAACAATA+AGG + chr4_1:80193704-80193723 None:intergenic 25.0%
! AGTTTATCATGTAAAATCCT+AGG + chr4_1:80193940-80193959 None:intergenic 25.0%
!! TTTTACATGATAAACTTCCT+AGG - chr4_1:80193944-80193963 Msa0576120:CDS 25.0%
! ATACAATATGAGAAGGTATG+GGG + chr4_1:80185851-80185870 None:intergenic 30.0%
! GATACAATATGAGAAGGTAT+GGG + chr4_1:80185852-80185871 None:intergenic 30.0%
AGATACAATATGAGAAGGTA+TGG + chr4_1:80185853-80185872 None:intergenic 30.0%
! GCTGATTCTGTTATTACAAT+TGG - chr4_1:80186032-80186051 Msa0576120:three_prime_UTR 30.0%
GATTCTGTTATTACAATTGG+AGG - chr4_1:80186035-80186054 Msa0576120:three_prime_UTR 30.0%
ATTCAAATACTTAGCAGCAA+CGG + chr4_1:80186090-80186109 None:intergenic 30.0%
! CTTCTTTGGATATAAGTTGA+AGG + chr4_1:80186211-80186230 None:intergenic 30.0%
AGAAAGTAAGGAAAAGGAAA+AGG + chr4_1:80186277-80186296 None:intergenic 30.0%
AAATTGATGCAAAAGAATGG+AGG + chr4_1:80186588-80186607 None:intergenic 30.0%
TGTGGATCATATATAATGTG+TGG + chr4_1:80186688-80186707 None:intergenic 30.0%
!! AAAAAAAAAGTGCTCTTGCA+TGG + chr4_1:80186757-80186776 None:intergenic 30.0%
AGTTGAAAGAATTGGAGATT+GGG + chr4_1:80187006-80187025 None:intergenic 30.0%
ATGAAAGCAGTTGAAAGAAT+TGG + chr4_1:80187014-80187033 None:intergenic 30.0%
! AAAATTTAAGGCCCAAACTA+TGG + chr4_1:80187045-80187064 None:intergenic 30.0%
!!! TATTTTGGTAAAAACGAAGG+AGG - chr4_1:80187143-80187162 Msa0576120:intron 30.0%
TACTTGTTTGACAAACAAGA+TGG + chr4_1:80187282-80187301 None:intergenic 30.0%
!!! ATTTTTTAGGATCTTACCCA+GGG + chr4_1:80187344-80187363 None:intergenic 30.0%
!!! TATTTTTTAGGATCTTACCC+AGG + chr4_1:80187345-80187364 None:intergenic 30.0%
TCAAGAATCCAAACATTCTT+GGG - chr4_1:80187643-80187662 Msa0576120:intron 30.0%
CAAAAATCCAAATCTAGTCA+CGG + chr4_1:80187941-80187960 None:intergenic 30.0%
AAAATCTTCAACACTAAGCA+AGG + chr4_1:80188299-80188318 None:intergenic 30.0%
ACTGATGAAAGGAATAATAG+CGG - chr4_1:80188447-80188466 Msa0576120:intron 30.0%
! AAACTTGGAAAATTTTGTGG+CGG - chr4_1:80188538-80188557 Msa0576120:intron 30.0%
CAAAACAGTAACACAATTGA+AGG + chr4_1:80188992-80189011 None:intergenic 30.0%
! TACAGCTATATTTTGTTGAC+AGG + chr4_1:80189438-80189457 None:intergenic 30.0%
GCTATTTAACCGGATTAAAT+CGG + chr4_1:80189518-80189537 None:intergenic 30.0%
!!! TTCCGCATAGTTTTAAAACT+CGG + chr4_1:80189681-80189700 None:intergenic 30.0%
TTTGACCAACAGGAAATAAA+TGG - chr4_1:80189874-80189893 Msa0576120:intron 30.0%
TTGACCAACAGGAAATAAAT+GGG - chr4_1:80189875-80189894 Msa0576120:intron 30.0%
ACCATATGATATTCTATCTG+TGG - chr4_1:80190093-80190112 Msa0576120:intron 30.0%
ACCACAGATAGAATATCATA+TGG + chr4_1:80190097-80190116 None:intergenic 30.0%
GACACTGAATTACAAAGAAT+TGG + chr4_1:80190327-80190346 None:intergenic 30.0%
ATTCTTTGTAATTCAGTGTC+AGG - chr4_1:80190327-80190346 Msa0576120:intron 30.0%
ACCAATTCTTCATATACTTG+TGG - chr4_1:80190376-80190395 Msa0576120:intron 30.0%
ACCACAAGTATATGAAGAAT+TGG + chr4_1:80190380-80190399 None:intergenic 30.0%
TTATACTCGAAAAATTGGTG+AGG - chr4_1:80190589-80190608 Msa0576120:intron 30.0%
! CAAGTTTGATGATATTGTTG+TGG - chr4_1:80191017-80191036 Msa0576120:intron 30.0%
ATAAAGAGAATCCAATGAAG+CGG + chr4_1:80191102-80191121 None:intergenic 30.0%
TTGGATTCTCTTTATATTGG+AGG - chr4_1:80191107-80191126 Msa0576120:intron 30.0%
GTAGATGAAAATGTACTTCA+TGG + chr4_1:80191348-80191367 None:intergenic 30.0%
ACTGGAAATTAACAAAACGT+AGG + chr4_1:80191378-80191397 None:intergenic 30.0%
!! TACGTTTTGTTAATTTCCAG+TGG - chr4_1:80191377-80191396 Msa0576120:intron 30.0%
!! ACGTTTTGTTAATTTCCAGT+GGG - chr4_1:80191378-80191397 Msa0576120:intron 30.0%
ACATGATGCTTATACCATTT+AGG - chr4_1:80191496-80191515 Msa0576120:intron 30.0%
! ATACACTCACATTTTGTATG+TGG + chr4_1:80191635-80191654 None:intergenic 30.0%
AAAAACCATAGACATCTTAG+CGG + chr4_1:80191693-80191712 None:intergenic 30.0%
GGTTCTTATTGAGAAAATCA+AGG - chr4_1:80191733-80191752 Msa0576120:intron 30.0%
TCGAATAAATACCTGTATAC+CGG + chr4_1:80191988-80192007 None:intergenic 30.0%
CAAAAGAGCAATATAGAATG+TGG + chr4_1:80192012-80192031 None:intergenic 30.0%
! CACATTCTATATTGCTCTTT+TGG - chr4_1:80192010-80192029 Msa0576120:intron 30.0%
!!! AAAAGACACCGTAGTTTTAA+TGG + chr4_1:80192038-80192057 None:intergenic 30.0%
!! AATAAATGGCCTTTTGTTTG+TGG + chr4_1:80192066-80192085 None:intergenic 30.0%
! GAATATCTAGTTCACAAACT+TGG - chr4_1:80192097-80192116 Msa0576120:intron 30.0%
GAATATCTTTCCATTTCTTG+TGG - chr4_1:80192160-80192179 Msa0576120:intron 30.0%
TCTTTACCTTATATCCTCAA+TGG - chr4_1:80192184-80192203 Msa0576120:intron 30.0%
AACTGTAGATTAAACCATTG+AGG + chr4_1:80192201-80192220 None:intergenic 30.0%
! ATCTACAGTTTTCTTAGGTA+TGG - chr4_1:80192211-80192230 Msa0576120:intron 30.0%
! TCTACAGTTTTCTTAGGTAT+GGG - chr4_1:80192212-80192231 Msa0576120:intron 30.0%
!! GCTCTAAGGAAATAATATGA+AGG + chr4_1:80192254-80192273 None:intergenic 30.0%
! TTTCCTTAGAGCATCTTTAA+TGG - chr4_1:80192262-80192281 Msa0576120:intron 30.0%
! TTCCTTAGAGCATCTTTAAT+GGG - chr4_1:80192263-80192282 Msa0576120:intron 30.0%
!!! GTAAACTGTGTTGATTTTTG+TGG - chr4_1:80192300-80192319 Msa0576120:intron 30.0%
!!! AAACTGTGTTGATTTTTGTG+GGG - chr4_1:80192302-80192321 Msa0576120:intron 30.0%
! TTTAGGATTTAACCAATCCA+TGG - chr4_1:80192336-80192355 Msa0576120:intron 30.0%
AAAACTACTTAGATCAACCA+TGG + chr4_1:80192356-80192375 None:intergenic 30.0%
!! ATTTTTAACTAGCGTTTTGG+CGG - chr4_1:80192817-80192836 Msa0576120:intron 30.0%
TGCTTAAGTGTATAATTGGA+AGG - chr4_1:80193097-80193116 Msa0576120:intron 30.0%
GAGAAAAAGTTAACCCAAAA+CGG - chr4_1:80193119-80193138 Msa0576120:intron 30.0%
!! TAAAGAAAATAGGCCGTTTT+GGG + chr4_1:80193135-80193154 None:intergenic 30.0%
! ATAAAGAAAATAGGCCGTTT+TGG + chr4_1:80193136-80193155 None:intergenic 30.0%
AGTGAACCAAACATGATAAA+AGG - chr4_1:80193359-80193378 Msa0576120:intron 30.0%
GTGAACCAAACATGATAAAA+GGG - chr4_1:80193360-80193379 Msa0576120:intron 30.0%
! CTTTTCCCTTTTATCATGTT+TGG + chr4_1:80193368-80193387 None:intergenic 30.0%
TATTGTTTATTCCTTCTCAG+CGG - chr4_1:80193460-80193479 Msa0576120:CDS 30.0%
TAAATATATCTTGCTCCAAG+AGG - chr4_1:80193727-80193746 Msa0576120:CDS 30.0%
AGAATTGATGTAATAAGGTG+AGG + chr4_1:80193839-80193858 None:intergenic 30.0%
TGGGAAGAAAAAGATGAAAA+GGG + chr4_1:80193875-80193894 None:intergenic 30.0%
GCAAGAGATACAATATGAGA+AGG + chr4_1:80185858-80185877 None:intergenic 35.0%
AATTGAGTGGAAACAAAGTG+CGG - chr4_1:80185970-80185989 Msa0576120:three_prime_UTR 35.0%
TAAGGAAAAGGAAAAGGAGA+AGG + chr4_1:80186271-80186290 None:intergenic 35.0%
AGTGAGAGAAAGTAAGGAAA+AGG + chr4_1:80186283-80186302 None:intergenic 35.0%
GAAAACAGTGAGAGAAAGTA+AGG + chr4_1:80186289-80186308 None:intergenic 35.0%
AAGTGTCTAAAGGAAAGGAA+AGG + chr4_1:80186327-80186346 None:intergenic 35.0%
AAAGAAAAGCTCATCAACCA+AGG - chr4_1:80186359-80186378 Msa0576120:intron 35.0%
AAGAAAAGCTCATCAACCAA+GGG - chr4_1:80186360-80186379 Msa0576120:intron 35.0%
!! CATATGTTATTTCCTGTTGG+CGG - chr4_1:80186390-80186409 Msa0576120:intron 35.0%
!! TTTTGAATTTCACTCTAGGG+TGG - chr4_1:80186605-80186624 Msa0576120:intron 35.0%
!! TTTGAATTTCACTCTAGGGT+GGG - chr4_1:80186606-80186625 Msa0576120:intron 35.0%
TGGAAAAAATGTCTCGTCAT+AGG - chr4_1:80186852-80186871 Msa0576120:intron 35.0%
CAAAGAGGAAAGAAACTTGT+TGG + chr4_1:80186969-80186988 None:intergenic 35.0%
CAGTTGAAAGAATTGGAGAT+TGG + chr4_1:80187007-80187026 None:intergenic 35.0%
GAGCTGTTAAAGAAAAAGGA+GGG + chr4_1:80187311-80187330 None:intergenic 35.0%
AGAGCTGTTAAAGAAAAAGG+AGG + chr4_1:80187312-80187331 None:intergenic 35.0%
!!! TTTTTTAGGATCTTACCCAG+GGG + chr4_1:80187343-80187362 None:intergenic 35.0%
CATTATTATGGTATTGCTGG+TGG + chr4_1:80187566-80187585 None:intergenic 35.0%
ACTTGGAGTGAAATCATAAG+AGG - chr4_1:80187589-80187608 Msa0576120:intron 35.0%
GTCAAGAATCCAAACATTCT+TGG - chr4_1:80187642-80187661 Msa0576120:intron 35.0%
CAAGAATCCAAACATTCTTG+GGG - chr4_1:80187644-80187663 Msa0576120:intron 35.0%
GATAGAACCATAAACAGTCA+AGG - chr4_1:80187666-80187685 Msa0576120:intron 35.0%
AAAGGTTTACTAGAGTCGAA+TGG - chr4_1:80187743-80187762 Msa0576120:intron 35.0%
!! ATATTGGCTTATGACTCTGA+AGG + chr4_1:80187792-80187811 None:intergenic 35.0%
TTCAGAGTCATAAGCCAATA+TGG - chr4_1:80187791-80187810 Msa0576120:intron 35.0%
ATGCTCATTCCTATGTAGTT+TGG - chr4_1:80187869-80187888 Msa0576120:CDS 35.0%
AAATTTGCCGTGACTAGATT+TGG - chr4_1:80187931-80187950 Msa0576120:CDS 35.0%
CAGGGAAAACAAGTATACAA+AGG + chr4_1:80187965-80187984 None:intergenic 35.0%
! TGCACTCCATCTTCAAATTT+TGG - chr4_1:80188211-80188230 Msa0576120:CDS 35.0%
TCAGTGCCAAAATTTGAAGA+TGG + chr4_1:80188220-80188239 None:intergenic 35.0%
! CATTTTCAACGCATAACAAG+TGG - chr4_1:80188319-80188338 Msa0576120:intron 35.0%
GTTTCTCTGTTCTTCTTCAA+TGG + chr4_1:80188418-80188437 None:intergenic 35.0%
ACACATTAGCTACTGATGAA+AGG - chr4_1:80188436-80188455 Msa0576120:CDS 35.0%
! AAGTCCATAGTTTTCAGACT+CGG - chr4_1:80188600-80188619 Msa0576120:intron 35.0%
AAACCGAACAATTATTGACC+CGG + chr4_1:80188782-80188801 None:intergenic 35.0%
! AGTTTAAAACTTGCCTTGAG+TGG - chr4_1:80188894-80188913 Msa0576120:intron 35.0%
! GTTTAAAACTTGCCTTGAGT+GGG - chr4_1:80188895-80188914 Msa0576120:intron 35.0%
GGCAACATCAAGTTTAAATG+TGG - chr4_1:80188927-80188946 Msa0576120:intron 35.0%
AATGTGGAATGTATTAACCG+TGG - chr4_1:80188943-80188962 Msa0576120:intron 35.0%
!!! CATAGTTTTAAAACTCGGCT+CGG + chr4_1:80189676-80189695 None:intergenic 35.0%
!!! AGCCGAGTTTTAAAACTATG+CGG - chr4_1:80189676-80189695 Msa0576120:intron 35.0%
GCAAAGAAAGACCATAATGT+AGG - chr4_1:80189931-80189950 Msa0576120:intron 35.0%
AAGAAAGACCATAATGTAGG+CGG - chr4_1:80189934-80189953 Msa0576120:intron 35.0%
!! CCATTGATTTGAAAGGAGTT+TGG + chr4_1:80190224-80190243 None:intergenic 35.0%
CCAAACTCCTTTCAAATCAA+TGG - chr4_1:80190221-80190240 Msa0576120:intron 35.0%
CATATACTTGTGGTGTACAA+AGG - chr4_1:80190386-80190405 Msa0576120:intron 35.0%
TACTCTTTATCTTCTGCTGT+TGG - chr4_1:80190434-80190453 Msa0576120:intron 35.0%
!!! TGTACTTAGGCTTTTTTAGC+AGG - chr4_1:80190514-80190533 Msa0576120:intron 35.0%
GAAAAATTGGTGAGGATCTT+GGG - chr4_1:80190597-80190616 Msa0576120:intron 35.0%
AAAAATTGGTGAGGATCTTG+GGG - chr4_1:80190598-80190617 Msa0576120:intron 35.0%
! CTATTGTTGGATCTGAAATC+AGG + chr4_1:80190656-80190675 None:intergenic 35.0%
AGAAGCTTGGTTTCTATTGT+TGG + chr4_1:80190669-80190688 None:intergenic 35.0%
CCACACTTTCAAATGGTATT+CGG + chr4_1:80191193-80191212 None:intergenic 35.0%
!! CGTTTTGTTAATTTCCAGTG+GGG - chr4_1:80191379-80191398 Msa0576120:intron 35.0%
!! GTTTTGTTAATTTCCAGTGG+GGG - chr4_1:80191380-80191399 Msa0576120:intron 35.0%
ATTGAGTAGCTTGAAAGCAA+GGG - chr4_1:80191433-80191452 Msa0576120:intron 35.0%
ACAAAGTTGTGGAAGTAATC+CGG + chr4_1:80191561-80191580 None:intergenic 35.0%
TACTTCCACAACTTTGTTCA+AGG - chr4_1:80191564-80191583 Msa0576120:intron 35.0%
! CTAAAATGGTAATGAGCAGA+AGG - chr4_1:80191657-80191676 Msa0576120:intron 35.0%
CGAATAAATACCTGTATACC+GGG + chr4_1:80191987-80192006 None:intergenic 35.0%
TTCGTGTGATGCACAATAAA+TGG + chr4_1:80192080-80192099 None:intergenic 35.0%
AATAAATGGCCTTTCGTTTG+TGG + chr4_1:80192129-80192148 None:intergenic 35.0%
TTCGTGTGATGCACAATAAA+TGG + chr4_1:80192080-80192099 None:intergenic 35.0%
AGGTAAAGATCCACAAGAAA+TGG + chr4_1:80192173-80192192 None:intergenic 35.0%
! TCCTTAGAGCATCTTTAATG+GGG - chr4_1:80192264-80192283 Msa0576120:intron 35.0%
TTTAATGGGGTGAACTAAAG+TGG - chr4_1:80192277-80192296 Msa0576120:intron 35.0%
TTAATGGGGTGAACTAAAGT+GGG - chr4_1:80192278-80192297 Msa0576120:intron 35.0%
!! GTGGGGTCAAATTGTTATTT+AGG - chr4_1:80192319-80192338 Msa0576120:intron 35.0%
TACTTAGATCAACCATGGAT+TGG + chr4_1:80192351-80192370 None:intergenic 35.0%
!! TTTTTAACTAGCGTTTTGGC+GGG - chr4_1:80192818-80192837 Msa0576120:intron 35.0%
AATAAGAAGATAGGAGAGAC+GGG + chr4_1:80192853-80192872 None:intergenic 35.0%
CAATAAGAAGATAGGAGAGA+CGG + chr4_1:80192854-80192873 None:intergenic 35.0%
GGGAAAAGAAAAGTTTGATC+AGG - chr4_1:80193380-80193399 Msa0576120:intron 35.0%
GAAAATCCAAAGAAATGGGA+AGG - chr4_1:80193517-80193536 Msa0576120:intron 35.0%
ATGTTAATGAATCTGTTCCC+AGG - chr4_1:80193635-80193654 Msa0576120:CDS 35.0%
TCTCATACTATACATCCTCT+TGG + chr4_1:80193745-80193764 None:intergenic 35.0%
GTGGGAAGAAAAAGATGAAA+AGG + chr4_1:80193876-80193895 None:intergenic 35.0%
ATTATGGGAGTGATGATTGT+GGG + chr4_1:80193894-80193913 None:intergenic 35.0%
TATTATGGGAGTGATGATTG+TGG + chr4_1:80193895-80193914 None:intergenic 35.0%
AGATTGAGACTTAAACCTTC+AGG + chr4_1:80193984-80194003 None:intergenic 35.0%
!! CTTTCTGGAATGCAATTGAG+TGG - chr4_1:80185957-80185976 Msa0576120:three_prime_UTR 40.0%
TGGAAACAAAGTGCGGAAAT+TGG - chr4_1:80185977-80185996 Msa0576120:three_prime_UTR 40.0%
AACAAGAAGATTGCCAGTGA+GGG + chr4_1:80186168-80186187 None:intergenic 40.0%
CTTCTTGTTGAGCGTTTGAT+TGG - chr4_1:80186179-80186198 Msa0576120:CDS 40.0%
TTGGCAAGTGTCTAAAGGAA+AGG + chr4_1:80186332-80186351 None:intergenic 40.0%
!! TGATGAGCTTTTCTTTGAGG+AGG + chr4_1:80186355-80186374 None:intergenic 40.0%
!!! GGTTGATGAGCTTTTCTTTG+AGG + chr4_1:80186358-80186377 None:intergenic 40.0%
!! GGCCATATGTTATTTCCTGT+TGG - chr4_1:80186387-80186406 Msa0576120:intron 40.0%
CGCCAACAGGAAATAACATA+TGG + chr4_1:80186392-80186411 None:intergenic 40.0%
ATAATGATGTGGAGAGAGAG+AGG + chr4_1:80186535-80186554 None:intergenic 40.0%
!! TTGAATTTCACTCTAGGGTG+GGG - chr4_1:80186607-80186626 Msa0576120:intron 40.0%
! AGAAGGTATACATAGACCCA+AGG + chr4_1:80186723-80186742 None:intergenic 40.0%
TCGATACAAGACTAGACTAG+TGG + chr4_1:80186902-80186921 None:intergenic 40.0%
GAGATTGTTGAGAGACAAAG+AGG + chr4_1:80186984-80187003 None:intergenic 40.0%
TCATCTCCTCATCCATAGTT+TGG - chr4_1:80187030-80187049 Msa0576120:intron 40.0%
CATCTCCTCATCCATAGTTT+GGG - chr4_1:80187031-80187050 Msa0576120:intron 40.0%
GTTCTATCCCCAAGAATGTT+TGG + chr4_1:80187654-80187673 None:intergenic 40.0%
TGTCGATCCTTGACTGTTTA+TGG + chr4_1:80187676-80187695 None:intergenic 40.0%
! CTGAGCACATTTTGCCATAT+TGG + chr4_1:80187808-80187827 None:intergenic 40.0%
TATCCTTGAAGCCTCAAACT+CGG - chr4_1:80187838-80187857 Msa0576120:intron 40.0%
CATATTCTTAGCCGAGTTTG+AGG + chr4_1:80187852-80187871 None:intergenic 40.0%
TTTCTTGTGAGCACAGCAAA+AGG + chr4_1:80187913-80187932 None:intergenic 40.0%
!! AGCATTCAGGTTGACTCATA+CGG + chr4_1:80188111-80188130 None:intergenic 40.0%
! CTTTGAGTTCTTGTCAGTCA+GGG + chr4_1:80188145-80188164 None:intergenic 40.0%
! TCTTTGAGTTCTTGTCAGTC+AGG + chr4_1:80188146-80188165 None:intergenic 40.0%
CACCTTCATTGAGTGAGATA+GGG + chr4_1:80188169-80188188 None:intergenic 40.0%
ACACCTTCATTGAGTGAGAT+AGG + chr4_1:80188170-80188189 None:intergenic 40.0%
!! CTCAATGAAGGTGTTTAGAG+TGG - chr4_1:80188176-80188195 Msa0576120:intron 40.0%
ACACTAAGCAAGGAAGTCTT+TGG + chr4_1:80188289-80188308 None:intergenic 40.0%
AACGCATAACAAGTGGAAAG+AGG - chr4_1:80188326-80188345 Msa0576120:intron 40.0%
AGTTGTCATTCACCCACAAT+AGG - chr4_1:80188387-80188406 Msa0576120:intron 40.0%
TCAATGGCAGAACCTATTGT+GGG + chr4_1:80188402-80188421 None:intergenic 40.0%
TTCAATGGCAGAACCTATTG+TGG + chr4_1:80188403-80188422 None:intergenic 40.0%
!! TTGGAAAATTTTGTGGCGGA+CGG - chr4_1:80188542-80188561 Msa0576120:intron 40.0%
! TTTTGACCGAGTTAACTGCA+TGG + chr4_1:80188699-80188718 None:intergenic 40.0%
AAATTCCAACTTGCCTTGAG+TGG - chr4_1:80188851-80188870 Msa0576120:CDS 40.0%
AATTCCAACTTGCCTTGAGT+GGG - chr4_1:80188852-80188871 Msa0576120:CDS 40.0%
GTGGTGGTTAATACATTCCA+CGG + chr4_1:80188963-80188982 None:intergenic 40.0%
CAGTAACACAATTGAAGGCA+TGG + chr4_1:80188987-80189006 None:intergenic 40.0%
!! AACGAGTCACCGATTTAATC+CGG - chr4_1:80189506-80189525 Msa0576120:intron 40.0%
!! GATGACTCGGTTAGATAACT+CGG + chr4_1:80189562-80189581 None:intergenic 40.0%
AACTATGCGGAAGTCTATTG+TGG - chr4_1:80189689-80189708 Msa0576120:intron 40.0%
GATGTTTGTCATCCTTGGAT+CGG + chr4_1:80189770-80189789 None:intergenic 40.0%
ATCCAAGGATGACAAACATC+TGG - chr4_1:80189770-80189789 Msa0576120:intron 40.0%
ATCCAGATGTTTGTCATCCT+TGG + chr4_1:80189775-80189794 None:intergenic 40.0%
CTGTGTGCAACAAACAACAA+CGG - chr4_1:80189840-80189859 Msa0576120:intron 40.0%
! CAAGAACTTGTTTGACCAAC+AGG - chr4_1:80189864-80189883 Msa0576120:intron 40.0%
GGTACCCATTTATTTCCTGT+TGG + chr4_1:80189882-80189901 None:intergenic 40.0%
! AGGATTTTTATGCAGGAGCA+AGG - chr4_1:80189959-80189978 Msa0576120:intron 40.0%
TGCTCCAAATGTGCTATGTT+CGG - chr4_1:80190147-80190166 Msa0576120:intron 40.0%
TATGTCAGAAGGGGGATATT+TGG - chr4_1:80190174-80190193 Msa0576120:intron 40.0%
ATTTGGACCAGACATAAGCT+AGG - chr4_1:80190191-80190210 Msa0576120:intron 40.0%
CCATATACCTAGCTTATGTC+TGG + chr4_1:80190201-80190220 None:intergenic 40.0%
CCAGACATAAGCTAGGTATA+TGG - chr4_1:80190198-80190217 Msa0576120:intron 40.0%
CGAAAAATTGGTGAGGATCT+TGG - chr4_1:80190596-80190615 Msa0576120:intron 40.0%
! TGGATCTGAAATCAGGACTT+GGG + chr4_1:80190649-80190668 None:intergenic 40.0%
! TTGGATCTGAAATCAGGACT+TGG + chr4_1:80190650-80190669 None:intergenic 40.0%
ATTGAGCTGCAGATTCAAAG+TGG - chr4_1:80190982-80191001 Msa0576120:intron 40.0%
GATGATATTGTTGTGGCTTG+TGG - chr4_1:80191024-80191043 Msa0576120:intron 40.0%
AGAATCCAATGAAGCGGAAA+CGG + chr4_1:80191096-80191115 None:intergenic 40.0%
CCGAATACCATTTGAAAGTG+TGG - chr4_1:80191190-80191209 Msa0576120:intron 40.0%
AGCTTAAGCTCACATTCACT+GGG + chr4_1:80191294-80191313 None:intergenic 40.0%
CATTGAGTAGCTTGAAAGCA+AGG - chr4_1:80191432-80191451 Msa0576120:intron 40.0%
ATGTGAGTCATCTAAGCAGA+AGG + chr4_1:80191463-80191482 None:intergenic 40.0%
CAAAGTTGTGGAAGTAATCC+GGG + chr4_1:80191560-80191579 None:intergenic 40.0%
! TTTGTTCAAGGCTTGCTTGA+CGG - chr4_1:80191576-80191595 Msa0576120:intron 40.0%
TGTGCCAAGTCATAACATGA+AGG - chr4_1:80191785-80191804 Msa0576120:intron 40.0%
GGAACCTTCATGTTATGACT+TGG + chr4_1:80191792-80191811 None:intergenic 40.0%
GTTCCTAAAACACATGTCTG+TGG - chr4_1:80191807-80191826 Msa0576120:intron 40.0%
! AGACCACAGACATGTGTTTT+AGG + chr4_1:80191813-80191832 None:intergenic 40.0%
GTCTGTGAAACTTCATCATC+TGG - chr4_1:80191829-80191848 Msa0576120:intron 40.0%
ATTTAACTGCTTACAGGCCA+AGG - chr4_1:80191882-80191901 Msa0576120:intron 40.0%
TTTAACTGCTTACAGGCCAA+GGG - chr4_1:80191883-80191902 Msa0576120:intron 40.0%
CTATGCAATGAACACTTCTG+AGG - chr4_1:80191912-80191931 Msa0576120:intron 40.0%
AAAGAAGTTGCTGAAGCTAC+AGG - chr4_1:80191949-80191968 Msa0576120:intron 40.0%
! TGGTTGTTTCCACAAACGAA+AGG - chr4_1:80192117-80192136 Msa0576120:intron 40.0%
ACCCCATTAAAGATGCTCTA+AGG + chr4_1:80192268-80192287 None:intergenic 40.0%
TTTATTCCTTCTCAGCGGTA+AGG - chr4_1:80193465-80193484 Msa0576120:CDS 40.0%
ATCCAAAGAAATGGGAAGGA+AGG - chr4_1:80193521-80193540 Msa0576120:intron 40.0%
TTCCTTCCTTCCCATTTCTT+TGG + chr4_1:80193526-80193545 None:intergenic 40.0%
AAGATCCTCTTCGTACATAC+AGG - chr4_1:80193544-80193563 Msa0576120:intron 40.0%
CCTTGTCATACAATCCTAAG+AGG + chr4_1:80193573-80193592 None:intergenic 40.0%
CCTCTTAGGATTGTATGACA+AGG - chr4_1:80193570-80193589 Msa0576120:intron 40.0%
TTTCCAATTCCATCTTGCCT+GGG + chr4_1:80193655-80193674 None:intergenic 40.0%
AGGTGAAAGAGAAAGAACCT+AGG + chr4_1:80193964-80193983 None:intergenic 40.0%
GTTCTTTCTCTTTCACCTGA+AGG - chr4_1:80193966-80193985 Msa0576120:CDS 40.0%
GAAGCAAGTCTCAACAGTGA+TGG - chr4_1:80185764-80185783 Msa0576120:three_prime_UTR 45.0%
! TATGAGAAGGTATGGGGTCT+AGG + chr4_1:80185845-80185864 None:intergenic 45.0%
TTCCATCTGTGAATCGGAGT+CGG + chr4_1:80185888-80185907 None:intergenic 45.0%
GGAAGCTTCCATCTGTGAAT+CGG + chr4_1:80185894-80185913 None:intergenic 45.0%
! TCTGTATTTGCTGGCAGGTT+CGG + chr4_1:80185915-80185934 None:intergenic 45.0%
! ACACTTCTGTATTTGCTGGC+AGG + chr4_1:80185920-80185939 None:intergenic 45.0%
TGCCAGCAAATACAGAAGTG+TGG - chr4_1:80185919-80185938 Msa0576120:three_prime_UTR 45.0%
AGCCACACTTCTGTATTTGC+TGG + chr4_1:80185924-80185943 None:intergenic 45.0%
GCGGAAATTGGAGTTCTTGA+TGG - chr4_1:80185989-80186008 Msa0576120:three_prime_UTR 45.0%
! AGCGGATTCAGCAATTGCAT+CGG + chr4_1:80186015-80186034 None:intergenic 45.0%
TGGCACGACAGTGATTACTT+TGG + chr4_1:80186064-80186083 None:intergenic 45.0%
GAAGTGCGGAGTATAAGGAA+AGG + chr4_1:80186119-80186138 None:intergenic 45.0%
! GCTTAGAAGTGCGGAGTATA+AGG + chr4_1:80186124-80186143 None:intergenic 45.0%
CAACGAGATGCTTAGAAGTG+CGG + chr4_1:80186133-80186152 None:intergenic 45.0%
CAACAAGAAGATTGCCAGTG+AGG + chr4_1:80186169-80186188 None:intergenic 45.0%
AAAGGAAAAGGAGAAGGAGG+AGG + chr4_1:80186265-80186284 None:intergenic 45.0%
GGAAAAGGAAAAGGAGAAGG+AGG + chr4_1:80186268-80186287 None:intergenic 45.0%
!! GAGCTTTTCTTTGAGGAGGT+TGG + chr4_1:80186351-80186370 None:intergenic 45.0%
AAAAGCTCATCAACCAAGGG+AGG - chr4_1:80186363-80186382 Msa0576120:intron 45.0%
GATCAAACTCTCTCGGAACA+TGG - chr4_1:80186412-80186431 Msa0576120:intron 45.0%
! CACATCTGAGACTGAACCTT+GGG - chr4_1:80186704-80186723 Msa0576120:intron 45.0%
AAGACTAGACTAGTGGCAAC+AGG + chr4_1:80186895-80186914 None:intergenic 45.0%
TAAGGCCCAAACTATGGATG+AGG + chr4_1:80187039-80187058 None:intergenic 45.0%
GTGTTGAAGCCAAATTCGTG+AGG - chr4_1:80187212-80187231 Msa0576120:intron 45.0%
AGGAAGACTATACTGGAAGC+AGG - chr4_1:80187241-80187260 Msa0576120:intron 45.0%
!! TGACAAACAAGATGGACTGC+AGG + chr4_1:80187274-80187293 None:intergenic 45.0%
!! GGTTTTCGTGCTCTTGTTGT+TGG + chr4_1:80187545-80187564 None:intergenic 45.0%
! TATGACTCTGAAGGAGGAGT+TGG + chr4_1:80187783-80187802 None:intergenic 45.0%
! TTGGCTTATGACTCTGAAGG+AGG + chr4_1:80187789-80187808 None:intergenic 45.0%
TTGTGAGCACAGCAAAAGGA+CGG + chr4_1:80187909-80187928 None:intergenic 45.0%
ATCGGTCAACATTAGCAGCA+GGG + chr4_1:80187983-80188002 None:intergenic 45.0%
!! TTGGTGAGAAGCACTCTGAT+CGG + chr4_1:80188001-80188020 None:intergenic 45.0%
TCTCACCAAGCATGACATGT+TGG - chr4_1:80188012-80188031 Msa0576120:intron 45.0%
TTACGCCAACATGTCATGCT+TGG + chr4_1:80188020-80188039 None:intergenic 45.0%
!! GCATTCAGGTTGACTCATAC+GGG + chr4_1:80188110-80188129 None:intergenic 45.0%
! GGTTGATTGGTTGAGCATTC+AGG + chr4_1:80188124-80188143 None:intergenic 45.0%
! TCTTGTCAGTCAGGGTTGAT+TGG + chr4_1:80188137-80188156 None:intergenic 45.0%
GACCCTATCTCACTCAATGA+AGG - chr4_1:80188164-80188183 Msa0576120:intron 45.0%
TTTGAAGATGGAGTGCAGCA+AGG + chr4_1:80188208-80188227 None:intergenic 45.0%
! CAATGGACTTCAGCTTGAGT+TGG + chr4_1:80188244-80188263 None:intergenic 45.0%
GCATAACAAGTGGAAAGAGG+AGG - chr4_1:80188329-80188348 Msa0576120:intron 45.0%
TGGAAAGAGGAGGTAGATTG+TGG - chr4_1:80188339-80188358 Msa0576120:intron 45.0%
GAGGCGGTAACAAGAAAACT+TGG - chr4_1:80188523-80188542 Msa0576120:intron 45.0%
! CATAGTTTTCAGACTCGGCT+CGG - chr4_1:80188605-80188624 Msa0576120:intron 45.0%
!! ATCCAAAAGTTGGCTCGAAC+CGG + chr4_1:80188673-80188692 None:intergenic 45.0%
TGCATGGCAGATCCAAAAGT+TGG + chr4_1:80188683-80188702 None:intergenic 45.0%
GATCTGCCATGCAGTTAACT+CGG - chr4_1:80188690-80188709 Msa0576120:intron 45.0%
GCAGTTAACTCGGTCAAAAC+CGG - chr4_1:80188700-80188719 Msa0576120:intron 45.0%
CTCGGAGGATTGAAGAAAAC+CGG - chr4_1:80188756-80188775 Msa0576120:intron 45.0%
! ACACAATTGAAGGCATGGTG+TGG + chr4_1:80188982-80189001 None:intergenic 45.0%
ATGACTGAACCGGATCAACT+CGG + chr4_1:80189584-80189603 None:intergenic 45.0%
TATGCGGAAGTCTATTGTGG+CGG - chr4_1:80189692-80189711 Msa0576120:intron 45.0%
GGCTAGATCTCATAAGTGAG+TGG + chr4_1:80189749-80189768 None:intergenic 45.0%
TATGAGATCTAGCCGATCCA+AGG - chr4_1:80189755-80189774 Msa0576120:intron 45.0%
GGATGACAAACATCTGGATG+TGG - chr4_1:80189776-80189795 Msa0576120:intron 45.0%
AAACATCTGGATGTGGTTGC+TGG - chr4_1:80189783-80189802 Msa0576120:intron 45.0%
ATGGGTACCAAATGTCCCAA+AGG - chr4_1:80189893-80189912 Msa0576120:intron 45.0%
TGGGTACCAAATGTCCCAAA+GGG - chr4_1:80189894-80189913 Msa0576120:intron 45.0%
GTCTTTCTTTGCTGCCTTCT+TGG + chr4_1:80189923-80189942 None:intergenic 45.0%
AATCCTAGCCGCCTACATTA+TGG + chr4_1:80189945-80189964 None:intergenic 45.0%
TCAGGAGCTCCTGATTTAGA+GGG + chr4_1:80189985-80190004 None:intergenic 45.0%
ATCAGGAGCTCCTGATTTAG+AGG + chr4_1:80189986-80190005 None:intergenic 45.0%
CACACCGAACATAGCACATT+TGG + chr4_1:80190154-80190173 None:intergenic 45.0%
!! TGTTCGGTGTGTATGTCAGA+AGG - chr4_1:80190163-80190182 Msa0576120:intron 45.0%
!! GTTCGGTGTGTATGTCAGAA+GGG - chr4_1:80190164-80190183 Msa0576120:intron 45.0%
! TTCGGTGTGTATGTCAGAAG+GGG - chr4_1:80190165-80190184 Msa0576120:intron 45.0%
AGGAATGTATACTCTGCGAC+TGG - chr4_1:80190256-80190275 Msa0576120:intron 45.0%
! ATATTGTTGTGGCTTGTGGC+AGG - chr4_1:80191028-80191047 Msa0576120:intron 45.0%
GCTTAAGCTCACATTCACTG+GGG + chr4_1:80191293-80191312 None:intergenic 45.0%
CAGCTTAAGCTCACATTCAC+TGG + chr4_1:80191295-80191314 None:intergenic 45.0%
!! ACAATTGCCGGTTTAGCACT+GGG - chr4_1:80191404-80191423 Msa0576120:intron 45.0%
TGATGAACCCAGTGCTAAAC+CGG + chr4_1:80191414-80191433 None:intergenic 45.0%
ATTCTCCGTTTGTGATGACC+CGG - chr4_1:80191539-80191558 Msa0576120:CDS 45.0%
GTAATCCGGGTCATCACAAA+CGG + chr4_1:80191547-80191566 None:intergenic 45.0%
GCAAGCCTTGAACAAAGTTG+TGG + chr4_1:80191572-80191591 None:intergenic 45.0%
TCTGACCGCTAAGATGTCTA+TGG - chr4_1:80191685-80191704 Msa0576120:intron 45.0%
CACAAGCACATTATGTCTGC+TGG + chr4_1:80191767-80191786 None:intergenic 45.0%
!! TACAGGTGTTGTTCTTGACC+CGG - chr4_1:80191966-80191985 Msa0576120:intron 45.0%
TTGTTCTTGACCCGGTATAC+AGG - chr4_1:80191974-80191993 Msa0576120:intron 45.0%
ATCCTCTTCGTACATACAGG+TGG - chr4_1:80193547-80193566 Msa0576120:intron 45.0%
TATGACAAGGTCGATCAGCT+GGG - chr4_1:80193583-80193602 Msa0576120:intron 45.0%
CTTTCCAATTCCATCTTGCC+TGG + chr4_1:80193656-80193675 None:intergenic 45.0%
!!! TTGATTTTAATTAAAATTAT+AGG - chr4_1:80192931-80192950 Msa0576120:intron 5.0%
!!! TATATTATATTTTATATTGT+TGG + chr4_1:80193022-80193041 None:intergenic 5.0%
!! TACTATAATTTATATTAAAA+AGG + chr4_1:80194094-80194113 None:intergenic 5.0%
GCAAGTCTCAACAGTGATGG+CGG - chr4_1:80185767-80185786 Msa0576120:three_prime_UTR 50.0%
CAAGTCTCAACAGTGATGGC+GGG - chr4_1:80185768-80185787 Msa0576120:three_prime_UTR 50.0%
! AAGTCTCAACAGTGATGGCG+GGG - chr4_1:80185769-80185788 Msa0576120:three_prime_UTR 50.0%
AGCCATACACAGCTCCTTCA+TGG - chr4_1:80185811-80185830 Msa0576120:three_prime_UTR 50.0%
GCCATACACAGCTCCTTCAT+GGG - chr4_1:80185812-80185831 Msa0576120:three_prime_UTR 50.0%
TCTAGGTAGGATGCCCATGA+AGG + chr4_1:80185828-80185847 None:intergenic 50.0%
! AGAAGGTATGGGGTCTAGGT+AGG + chr4_1:80185841-80185860 None:intergenic 50.0%
GTGAATCGGAGTCGGAAGAT+GGG + chr4_1:80185880-80185899 None:intergenic 50.0%
TGTGAATCGGAGTCGGAAGA+TGG + chr4_1:80185881-80185900 None:intergenic 50.0%
TTCCGACTCCGATTCACAGA+TGG - chr4_1:80185883-80185902 Msa0576120:three_prime_UTR 50.0%
ATACTTAGCAGCAACGGCAG+TGG + chr4_1:80186084-80186103 None:intergenic 50.0%
AGAAGATTGCCAGTGAGGGT+GGG + chr4_1:80186164-80186183 None:intergenic 50.0%
AAGAAGATTGCCAGTGAGGG+TGG + chr4_1:80186165-80186184 None:intergenic 50.0%
GGAGGTTGGCAAGTGTCTAA+AGG + chr4_1:80186337-80186356 None:intergenic 50.0%
TAACATATGGCCTCCTCCCT+TGG + chr4_1:80186379-80186398 None:intergenic 50.0%
AGAGAGTTTGATCCGCCAAC+AGG + chr4_1:80186405-80186424 None:intergenic 50.0%
! GTTGGCGGATCAAACTCTCT+CGG - chr4_1:80186405-80186424 Msa0576120:intron 50.0%
!! ATTTCACTCTAGGGTGGGGT+AGG - chr4_1:80186611-80186630 Msa0576120:intron 50.0%
CCAAGGTTCAGTCTCAGATG+TGG + chr4_1:80186706-80186725 None:intergenic 50.0%
! CCACATCTGAGACTGAACCT+TGG - chr4_1:80186703-80186722 Msa0576120:intron 50.0%
GCATGGAGACTTAGAGGAGA+AGG + chr4_1:80186740-80186759 None:intergenic 50.0%
GCTCTTGCATGGAGACTTAG+AGG + chr4_1:80186746-80186765 None:intergenic 50.0%
TGAAGCCAAATTCGTGAGGC+AGG - chr4_1:80187216-80187235 Msa0576120:intron 50.0%
GCAGGAGAGGAAGACTATAC+TGG - chr4_1:80187234-80187253 Msa0576120:intron 50.0%
! TTTAGGATCTTACCCAGGGG+AGG + chr4_1:80187340-80187359 None:intergenic 50.0%
!! TCGTGCTCTTGTTGTTGGCT+CGG + chr4_1:80187540-80187559 None:intergenic 50.0%
! TAGCCGAGTTTGAGGCTTCA+AGG + chr4_1:80187844-80187863 None:intergenic 50.0%
TGTGAGCACAGCAAAAGGAC+GGG + chr4_1:80187908-80187927 None:intergenic 50.0%
GATCGGTCAACATTAGCAGC+AGG + chr4_1:80187984-80188003 None:intergenic 50.0%
AGGTAGATTGTGGACCCTGT+TGG - chr4_1:80188349-80188368 Msa0576120:intron 50.0%
!!! TGTTTTGACCTCCGAAGACG+AGG - chr4_1:80188504-80188523 Msa0576120:intron 50.0%
TCTTGTTACCGCCTCGTCTT+CGG + chr4_1:80188518-80188537 None:intergenic 50.0%
!!! AAAATTTTGTGGCGGACGGC+AGG - chr4_1:80188546-80188565 Msa0576120:intron 50.0%
!!! AAATTTTGTGGCGGACGGCA+GGG - chr4_1:80188547-80188566 Msa0576120:intron 50.0%
CGAGCCGAGTCTGAAAACTA+TGG + chr4_1:80188607-80188626 None:intergenic 50.0%
CGGTCAAAACCGGTCAAACT+CGG - chr4_1:80188710-80188729 Msa0576120:intron 50.0%
GAGGATTGAAGAAAACCGGC+CGG - chr4_1:80188760-80188779 Msa0576120:intron 50.0%
AGGATTGAAGAAAACCGGCC+GGG - chr4_1:80188761-80188780 Msa0576120:intron 50.0%
CGAACAATTATTGACCCGGC+CGG + chr4_1:80188778-80188797 None:intergenic 50.0%
CGGCCGGGTCAATAATTGTT+CGG - chr4_1:80188776-80188795 Msa0576120:intron 50.0%
GATTCCCACTCAAGGCAAGT+TGG + chr4_1:80188859-80188878 None:intergenic 50.0%
! CAATTGAAGGCATGGTGTGG+TGG + chr4_1:80188979-80188998 None:intergenic 50.0%
GTTGATCCGGTTCAGTCATG+CGG - chr4_1:80189585-80189604 Msa0576120:intron 50.0%
TGGTCGAACCACTGAGTCAT+TGG + chr4_1:80189616-80189635 None:intergenic 50.0%
GTACTGGGTTACTGGGTCAA+TGG + chr4_1:80189636-80189655 None:intergenic 50.0%
CAATGGCTGACAGCGGTAAA+CGG - chr4_1:80189814-80189833 Msa0576120:intron 50.0%
!! TGGTAGCCCTTTGGGACATT+TGG + chr4_1:80189903-80189922 None:intergenic 50.0%
! TGCCTTCTTGGTAGCCCTTT+GGG + chr4_1:80189911-80189930 None:intergenic 50.0%
AGACCATAATGTAGGCGGCT+AGG - chr4_1:80189939-80189958 Msa0576120:intron 50.0%
! GGCGGCTAGGATTTTTATGC+AGG - chr4_1:80189952-80189971 Msa0576120:intron 50.0%
TCGGTGTGTATGTCAGAAGG+GGG - chr4_1:80190166-80190185 Msa0576120:intron 50.0%
TCTACTCAGGGGCTACATAG+AGG - chr4_1:80190948-80190967 Msa0576120:intron 50.0%
GGGCTACATAGAGGCAGTTA+GGG - chr4_1:80190957-80190976 Msa0576120:intron 50.0%
ACCATCCGTTTCCGCTTCAT+TGG - chr4_1:80191088-80191107 Msa0576120:intron 50.0%
TCCAATGAAGCGGAAACGGA+TGG + chr4_1:80191092-80191111 None:intergenic 50.0%
CTCACATTCACTGGGGAGTT+TGG + chr4_1:80191286-80191305 None:intergenic 50.0%
!! CACAATTGCCGGTTTAGCAC+TGG - chr4_1:80191403-80191422 Msa0576120:intron 50.0%
! ACCATTTAGGTGCTACCTGC+AGG - chr4_1:80191509-80191528 Msa0576120:CDS 50.0%
ACCTGCAGGTAGCACCTAAA+TGG + chr4_1:80191513-80191532 None:intergenic 50.0%
!! TTGCTTGACGGACTCAAAGC+TGG - chr4_1:80191588-80191607 Msa0576120:intron 50.0%
CATTGCATAGCCAAGACCCT+TGG + chr4_1:80191902-80191921 None:intergenic 50.0%
GTACATACAGGTGGCCTCTT+AGG - chr4_1:80193556-80193575 Msa0576120:intron 50.0%
GTATGACAAGGTCGATCAGC+TGG - chr4_1:80193582-80193601 Msa0576120:intron 50.0%
GATCAGCTGGGTTCCTTTGT+GGG - chr4_1:80193595-80193614 Msa0576120:intron 50.0%
ATCAGCTGGGTTCCTTTGTG+GGG - chr4_1:80193596-80193615 Msa0576120:intron 50.0%
TGGGTTCCTTTGTGGGGAAT+TGG - chr4_1:80193602-80193621 Msa0576120:CDS 50.0%
TCGTTGCCAATTCCCCACAA+AGG + chr4_1:80193611-80193630 None:intergenic 50.0%
TGTGGGGAATTGGCAACGAA+TGG - chr4_1:80193612-80193631 Msa0576120:CDS 50.0%
GAATCTGTTCCCAGGCAAGA+TGG - chr4_1:80193643-80193662 Msa0576120:CDS 50.0%
GTTCCCAGGCAAGATGGAAT+TGG - chr4_1:80193649-80193668 Msa0576120:CDS 50.0%
GCCCATGAAGGAGCTGTGTA+TGG + chr4_1:80185816-80185835 None:intergenic 55.0%
CTGAAGCGCGACGATCTTTC+TGG - chr4_1:80185942-80185961 Msa0576120:three_prime_UTR 55.0%
AGCTCATCAACCAAGGGAGG+AGG - chr4_1:80186366-80186385 Msa0576120:intron 55.0%
CCTCTCCTGCCTCACGAATT+TGG + chr4_1:80187224-80187243 None:intergenic 55.0%
CCAAATTCGTGAGGCAGGAG+AGG - chr4_1:80187221-80187240 Msa0576120:intron 55.0%
ACAGCTCTATTGTCCTCCCC+TGG - chr4_1:80187324-80187343 Msa0576120:intron 55.0%
CAGCTCTATTGTCCTCCCCT+GGG - chr4_1:80187325-80187344 Msa0576120:intron 55.0%
GTGAGCACAGCAAAAGGACG+GGG + chr4_1:80187907-80187926 None:intergenic 55.0%
TTCCTCTGTGCGCACCAACA+GGG + chr4_1:80188366-80188385 None:intergenic 55.0%
TTTGACCTCCGAAGACGAGG+CGG - chr4_1:80188507-80188526 Msa0576120:intron 55.0%
ATCACATGGATGCCACGCGT+CGG - chr4_1:80188571-80188590 Msa0576120:intron 55.0%
!!! TTTTCAGACTCGGCTCGGAC+CGG - chr4_1:80188610-80188629 Msa0576120:intron 55.0%
!!! AGCCGGTTCGAGCCAACTTT+TGG - chr4_1:80188668-80188687 Msa0576120:intron 55.0%
CGGCCAGAACCGGATTAAAC+CGG - chr4_1:80188730-80188749 Msa0576120:intron 55.0%
!! TCGCCGGTTTAATCCGGTTC+TGG + chr4_1:80188736-80188755 None:intergenic 55.0%
ACCGGATTAAACCGGCGACT+CGG - chr4_1:80188738-80188757 Msa0576120:intron 55.0%
!! TCCGAGTCGCCGGTTTAATC+CGG + chr4_1:80188742-80188761 None:intergenic 55.0%
TCTTCAATCCTCCGAGTCGC+CGG + chr4_1:80188752-80188771 None:intergenic 55.0%
GCCTTGAGTGGGAATCGAAC+TGG - chr4_1:80188863-80188882 Msa0576120:CDS 55.0%
GCCAGTTCGATTCCCACTCA+AGG + chr4_1:80188867-80188886 None:intergenic 55.0%
GCCTTGAGTGGGAATCGAAC+TGG - chr4_1:80188863-80188882 Msa0576120:CDS 55.0%
GCCAGTTCGATTCCCACTCA+AGG + chr4_1:80188867-80188886 None:intergenic 55.0%
CCGGATCAACTCGGATGACT+CGG + chr4_1:80189575-80189594 None:intergenic 55.0%
!! CCGAGTCATCCGAGTTGATC+CGG - chr4_1:80189572-80189591 Msa0576120:intron 55.0%
GTCGAACCGCATGACTGAAC+CGG + chr4_1:80189594-80189613 None:intergenic 55.0%
CGGTTCGACCAATGACTCAG+TGG - chr4_1:80189605-80189624 Msa0576120:intron 55.0%
TCTATTGTGGCGGTGCGTGT+TGG - chr4_1:80189702-80189721 Msa0576120:intron 55.0%
CTATTGTGGCGGTGCGTGTT+GGG - chr4_1:80189703-80189722 Msa0576120:intron 55.0%
TATTGTGGCGGTGCGTGTTG+GGG - chr4_1:80189704-80189723 Msa0576120:intron 55.0%
! TGCGTGTTGGGGTGTCTACT+GGG - chr4_1:80189715-80189734 Msa0576120:intron 55.0%
GCGAAAGCAATGGCTGACAG+CGG - chr4_1:80189807-80189826 Msa0576120:intron 55.0%
GTCCCAAAGGGCTACCAAGA+AGG - chr4_1:80189906-80189925 Msa0576120:intron 55.0%
! CTGCCTTCTTGGTAGCCCTT+TGG + chr4_1:80189912-80189931 None:intergenic 55.0%
GGAGCAAGGCCCTCTAAATC+AGG - chr4_1:80189973-80189992 Msa0576120:intron 55.0%
TTGGTGAGGATCTTGGGGAC+TGG - chr4_1:80190603-80190622 Msa0576120:intron 55.0%
CCAAGCTTCTTGCCACCAAG+CGG - chr4_1:80190679-80190698 Msa0576120:intron 55.0%
CAAGCTTCTTGCCACCAAGC+GGG - chr4_1:80190680-80190699 Msa0576120:intron 55.0%
ATCAAGCAGATCCCGCTTGG+TGG + chr4_1:80190694-80190713 None:intergenic 55.0%
ACGATCAAGCAGATCCCGCT+TGG + chr4_1:80190697-80190716 None:intergenic 55.0%
GGGGCTACATAGAGGCAGTT+AGG - chr4_1:80190956-80190975 Msa0576120:intron 55.0%
GCGGAAACGGATGGTTGCTA+AGG + chr4_1:80191083-80191102 None:intergenic 55.0%
TGCTTACAGGCCAAGGGTCT+TGG - chr4_1:80191889-80191908 Msa0576120:intron 55.0%
GAAGATAGGAGAGACGGGCA+CGG + chr4_1:80192848-80192867 None:intergenic 55.0%
AAGCAGCCTTACCGCTGAGA+AGG + chr4_1:80193474-80193493 None:intergenic 55.0%
GGCCACCTGTATGTACGAAG+AGG + chr4_1:80193552-80193571 None:intergenic 55.0%
CGATCAGCTGGGTTCCTTTG+TGG - chr4_1:80193594-80193613 Msa0576120:intron 55.0%
GACCAAGATCCCACCCTCAC+TGG - chr4_1:80186152-80186171 Msa0576120:exon 60.0%
TGCCAGTGAGGGTGGGATCT+TGG + chr4_1:80186157-80186176 None:intergenic 60.0%
CTTCCTCTGTGCGCACCAAC+AGG + chr4_1:80188367-80188386 None:intergenic 60.0%
TGTTACCGCCTCGTCTTCGG+AGG + chr4_1:80188515-80188534 None:intergenic 60.0%
TGGATGCCACGCGTCGGAAA+CGG - chr4_1:80188577-80188596 Msa0576120:intron 60.0%
! CGGTTCTGGCCGAGTTTGAC+CGG + chr4_1:80188722-80188741 None:intergenic 60.0%
CGGTCAAACTCGGCCAGAAC+CGG - chr4_1:80188720-80188739 Msa0576120:intron 60.0%
! GGATTAAACCGGCGACTCGG+AGG - chr4_1:80188741-80188760 Msa0576120:intron 60.0%
!! GGCAGGGGTACTGGGTTACT+GGG + chr4_1:80189643-80189662 None:intergenic 60.0%
!! ATCGACTCGGCAGGGGTACT+GGG + chr4_1:80189651-80189670 None:intergenic 60.0%
!! ACTCGGCTCGGTCATCGACT+CGG + chr4_1:80189664-80189683 None:intergenic 60.0%
! GTGCGTGTTGGGGTGTCTAC+TGG - chr4_1:80189714-80189733 Msa0576120:intron 60.0%
! TTGGGGTGTCTACTGGGCTC+TGG - chr4_1:80189721-80189740 Msa0576120:intron 60.0%
! TGGGGTGTCTACTGGGCTCT+GGG - chr4_1:80189722-80189741 Msa0576120:intron 60.0%
GGTTGCTGGCGCGAAAGCAA+TGG - chr4_1:80189797-80189816 Msa0576120:intron 60.0%
TGGCTGACAGCGGTAAACGG+TGG - chr4_1:80189817-80189836 Msa0576120:intron 60.0%
! CCGCTTGGTGGCAAGAAGCT+TGG + chr4_1:80190682-80190701 None:intergenic 60.0%
! TCCAGTGGGGGCACAATTGC+CGG - chr4_1:80191392-80191411 Msa0576120:intron 60.0%
CGGAGAATGCATGCACCTGC+AGG + chr4_1:80191527-80191546 None:intergenic 60.0%
GACCCTGTTGGTGCGCACAG+AGG - chr4_1:80188361-80188380 Msa0576120:intron 65.0%
GGACTTCCGTTTCCGACGCG+TGG + chr4_1:80188586-80188605 None:intergenic 65.0%
GGACCGGTTGGACCGTGAAC+CGG - chr4_1:80188639-80188658 Msa0576120:intron 65.0%
!! CCACCGGTTCACGGTCCAAC+CGG + chr4_1:80188645-80188664 None:intergenic 65.0%
CGGTTGGACCGTGAACCGGT+GGG - chr4_1:80188643-80188662 Msa0576120:intron 65.0%
!! CCGGCTTACCCACCGGTTCA+CGG + chr4_1:80188654-80188673 None:intergenic 65.0%
CCGTGAACCGGTGGGTAAGC+CGG - chr4_1:80188651-80188670 Msa0576120:intron 65.0%
! GCTCGAACCGGCTTACCCAC+CGG + chr4_1:80188661-80188680 None:intergenic 65.0%
!! CGGCAGGGGTACTGGGTTAC+TGG + chr4_1:80189644-80189663 None:intergenic 65.0%
!! CATCGACTCGGCAGGGGTAC+TGG + chr4_1:80189652-80189671 None:intergenic 65.0%
!! CTCGGTCATCGACTCGGCAG+GGG + chr4_1:80189658-80189677 None:intergenic 65.0%
!! GCTCGGTCATCGACTCGGCA+GGG + chr4_1:80189659-80189678 None:intergenic 65.0%
ACCGGCAATTGTGCCCCCAC+TGG + chr4_1:80191396-80191415 None:intergenic 65.0%
! GCGGACGGCAGGGCATCACA+TGG - chr4_1:80188557-80188576 Msa0576120:intron 70.0%
CACGGTCCAACCGGTCCGAC+CGG + chr4_1:80188636-80188655 None:intergenic 70.0%
CCGGTTGGACCGTGAACCGG+TGG - chr4_1:80188642-80188661 Msa0576120:intron 70.0%
!! GGCTCGGTCATCGACTCGGC+AGG + chr4_1:80189660-80189679 None:intergenic 70.0%
!! CAGACTCGGCTCGGACCGGC+CGG - chr4_1:80188614-80188633 Msa0576120:intron 75.0%
GTCCAACCGGTCCGACCGGC+CGG + chr4_1:80188632-80188651 None:intergenic 75.0%
!!! CTCGGCTCGGACCGGCCGGT+CGG - chr4_1:80188618-80188637 Msa0576120:intron 80.0%
! CTCGGACCGGCCGGTCGGAC+CGG - chr4_1:80188623-80188642 Msa0576120:intron 80.0%
! GACCGGCCGGTCGGACCGGT+TGG - chr4_1:80188627-80188646 Msa0576120:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80185730 80194122 80185730 ID=Msa0576120;Name=Msa0576120
chr4_1 mRNA 80185730 80194122 80185730 ID=Msa0576120-mRNA-1;Parent=Msa0576120;Name=Msa0576120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=17|0.71|0.87|0.87|0.85|1|8|438|408
chr4_1 exon 80185730 80186372 80185730 ID=Msa0576120-mRNA-1:exon:28663;Parent=Msa0576120-mRNA-1
chr4_1 exon 80187857 80187954 80187857 ID=Msa0576120-mRNA-1:exon:28662;Parent=Msa0576120-mRNA-1
chr4_1 exon 80188208 80188321 80188208 ID=Msa0576120-mRNA-1:exon:28661;Parent=Msa0576120-mRNA-1
chr4_1 exon 80188398 80188455 80188398 ID=Msa0576120-mRNA-1:exon:28660;Parent=Msa0576120-mRNA-1
chr4_1 exon 80188803 80188895 80188803 ID=Msa0576120-mRNA-1:exon:28659;Parent=Msa0576120-mRNA-1
chr4_1 exon 80191502 80191560 80191502 ID=Msa0576120-mRNA-1:exon:28658;Parent=Msa0576120-mRNA-1
chr4_1 exon 80193419 80193511 80193419 ID=Msa0576120-mRNA-1:exon:28657;Parent=Msa0576120-mRNA-1
chr4_1 exon 80193599 80194122 80193599 ID=Msa0576120-mRNA-1:exon:28656;Parent=Msa0576120-mRNA-1
chr4_1 five_prime_UTR 80194106 80194122 80194106 ID=Msa0576120-mRNA-1:five_prime_utr;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80193599 80194105 80193599 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80193419 80193511 80193419 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80191502 80191560 80191502 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80188803 80188895 80188803 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80188398 80188455 80188398 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80188208 80188321 80188208 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80187857 80187954 80187857 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 CDS 80186168 80186372 80186168 ID=Msa0576120-mRNA-1:cds;Parent=Msa0576120-mRNA-1
chr4_1 three_prime_UTR 80185730 80186167 80185730 ID=Msa0576120-mRNA-1:three_prime_utr;Parent=Msa0576120-mRNA-1
Gene Sequence

>Msa0576120

ATGTATGGTCATCTGAAGAAGCAAGTCTCAACAGTGATGGCGGGGTTTGAGTTTCTGAGTGTGAAGCCATACACAGCTCCTTCATGGGCATCCTACCTAGACCCCATACCTTCTCATATTGTATCTCTTGCCCATCTTCCGACTCCGATTCACAGATGGAAGCTTCCGAACCTGCCAGCAAATACAGAAGTGTGGCTGAAGCGCGACGATCTTTCTGGAATGCAATTGAGTGGAAACAAAGTGCGGAAATTGGAGTTCTTGATGGCCGATGCAATTGCTGAATCCGCTGATTCTGTTATTACAATTGGAGGCATCCAAAGTAATCACTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTGAATCTCGATCCTTTCCTTATACTCCGCACTTCTAAGCATCTCGTTGACCAAGATCCCACCCTCACTGGCAATCTTCTTGTTGAGCGTTTGATTGGAGCTCACCTTCAACTTATATCCAAAGAAGAATATTCACAAATTGGAAGTGTCACACTTGCCAACCTCCTCAAAGAAAAGCTCATCAACCAAGGGAGGAGGCCATATGTTATTTCCTGTTGGCGGATCAAACTCTCTCGGAACATGACTTCCTTGCTTAGTGTTGAAGATTTTCATTTTCAACGCATAACAAGTGGAAAGAGGAGGGGCTACATAGAGGCAGTTAGGGAGATTGAGCTGCAGATTCAAAGTGGAACAAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGGCAGTGGGGGCACAATTGCCGGTTTAGCACTGGGTTCATCATTGAGTAGCTTGAAAGCAAGGGTGCATGCATTCTCCGTTTGTGATGACCCGGATTACTTCCACAACTTTGTTCAAGGCTTGCTTGACGGACTCAAAGCTGGTGTTAGCTCTAGAGATATTGTCCACATACAAAATGCCAAGGGTCTTGGCTATGCAATGAACACTTCTGAGGAGCTTAGTTTTGTAAAAGAAGTTGCTGAAGCTACAGGTGTTGTTCTTGACCCGGTATACAGCGGTAAGGCTGCTTATGCAATGCTGAAAGATATGAATGAAAATCCAAAGAAATGGGAAGGAAGGAAGATCCTCTTCGTACATACAGGTGGCCTCTTAGGATTGTATGACAAGGTCGATCAGCTGGGTTCCTTTGTGGGGAATTGGCAACGAATGGATGTTAATGAATCTGTTCCCAGGCAAGATGGAATTGGAAAGATGTTCTAG
Protein sequence

>Msa0576120

MYGHLKKQVSTVMAGFEFLSVKPYTAPSWASYLDPIPSHIVSLAHLPTPIHRWKLPNLPANTEVWLKRDDLSGMQLSGNKVRKLEFLMADAIAESADSVITIGGIQSNHCRATAVAAKYLNLDPFLILRTSKHLVDQDPTLTGNLLVERLIGAHLQLISKEEYSQIGSVTLANLLKEKLINQGRRPYVISCWRIKLSRNMTSLLSVEDFHFQRITSGKRRGYIEAVREIELQIQSGTSNVKFDDIVVACGSGGTIAGLALGSSLSSLKARVHAFSVCDDPDYFHNFVQGLLDGLKAGVSSRDIVHIQNAKGLGYAMNTSEELSFVKEVAEATGVVLDPVYSGKAAYAMLKDMNENPKKWEGRKILFVHTGGLLGLYDKVDQLGSFVGNWQRMDVNESVPRQDGIGKMF*