Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069180 | AES80582.1 | 96.735 | 245 | 7 | 1 | 1 | 244 | 1 | 245 | 2.49e-169 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069180 | sp|Q9FF31|LRL21_ARATH | 28.125 | 256 | 126 | 12 | 16 | 224 | 14 | 258 | 1.98e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069180 | G7KUD2 | 96.735 | 245 | 7 | 1 | 1 | 244 | 1 | 245 | 1.19e-169 | 492 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa1069180 | 0.805510 | 1.289272e-49 | -8.615850e-47 |
| Msa0055280 | Msa1069180 | 0.807010 | 6.227948e-50 | -8.615850e-47 |
| Msa0620640 | Msa1069180 | 0.811319 | 7.429733e-51 | -8.615850e-47 |
| Msa0694250 | Msa1069180 | 0.803427 | 3.504688e-49 | -8.615850e-47 |
| Msa0787720 | Msa1069180 | 0.801623 | 8.252304e-49 | -8.615850e-47 |
| Msa0223100 | Msa1069180 | 0.823546 | 1.306939e-53 | -8.615850e-47 |
| Msa0223290 | Msa1069180 | 0.825421 | 4.731272e-54 | -8.615850e-47 |
| Msa0223380 | Msa1069180 | 0.824632 | 7.266798e-54 | -8.615850e-47 |
| Msa0379540 | Msa1069180 | 0.810610 | 1.057979e-50 | -8.615850e-47 |
| Msa0388030 | Msa1069180 | -0.810447 | 1.147338e-50 | -8.615850e-47 |
| Msa0404220 | Msa1069180 | 0.822870 | 1.879937e-53 | -8.615850e-47 |
| Msa0431830 | Msa1069180 | 0.813866 | 2.060062e-51 | -8.615850e-47 |
| Msa1030170 | Msa1069180 | 0.811162 | 8.035953e-51 | -8.615850e-47 |
| Msa1069180 | Msa1120620 | 0.844346 | 8.003825e-59 | -8.615850e-47 |
| Msa1069180 | Msa1157020 | 0.823261 | 1.523878e-53 | -8.615850e-47 |
| Msa0288320 | Msa1069180 | 0.811731 | 6.047175e-51 | -8.615850e-47 |
| Msa0302650 | Msa1069180 | 0.819750 | 9.858504e-53 | -8.615850e-47 |
| Msa0491500 | Msa1069180 | 0.825057 | 5.769119e-54 | -8.615850e-47 |
| Msa0505060 | Msa1069180 | 0.804429 | 2.169507e-49 | -8.615850e-47 |
| Msa0530380 | Msa1069180 | 0.800750 | 1.244826e-48 | -8.615850e-47 |
| Msa0581920 | Msa1069180 | 0.800957 | 1.129240e-48 | -8.615850e-47 |
| Msa0908170 | Msa1069180 | 0.809619 | 1.730441e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069180 | MtrunA17_Chr7g0251051 | 96.735 | 245 | 7 | 1 | 1 | 244 | 1 | 245 | 2.29e-173 | 492 |
| Msa1069180 | MtrunA17_Chr7g0251071 | 57.840 | 287 | 76 | 8 | 1 | 244 | 1 | 285 | 5.27e-98 | 300 |
| Msa1069180 | MtrunA17_Chr7g0251061 | 54.255 | 282 | 91 | 6 | 1 | 244 | 1 | 282 | 6.28e-92 | 284 |
| Msa1069180 | MtrunA17_Chr7g0251121 | 50.000 | 272 | 90 | 11 | 1 | 234 | 1 | 264 | 3.71e-75 | 241 |
| Msa1069180 | MtrunA17_Chr7g0251101 | 48.601 | 286 | 100 | 10 | 1 | 246 | 1 | 279 | 9.39e-75 | 239 |
| Msa1069180 | MtrunA17_Chr1g0212811 | 46.212 | 264 | 95 | 10 | 13 | 233 | 3 | 262 | 1.95e-69 | 215 |
| Msa1069180 | MtrunA17_Chr7g0251091 | 63.077 | 130 | 44 | 2 | 30 | 155 | 1 | 130 | 1.19e-52 | 167 |
| Msa1069180 | MtrunA17_Chr7g0251011 | 26.923 | 234 | 126 | 7 | 5 | 204 | 4 | 226 | 3.23e-21 | 90.1 |
| Msa1069180 | MtrunA17_Chr7g0251131 | 27.632 | 228 | 120 | 7 | 11 | 204 | 7 | 223 | 4.42e-21 | 89.4 |
| Msa1069180 | MtrunA17_Chr6g0483851 | 30.597 | 268 | 135 | 12 | 3 | 224 | 7 | 269 | 5.69e-21 | 91.7 |
| Msa1069180 | MtrunA17_Chr6g0483791 | 30.147 | 272 | 134 | 13 | 1 | 224 | 1 | 264 | 7.54e-18 | 82.8 |
| Msa1069180 | MtrunA17_Chr8g0391231 | 27.143 | 280 | 147 | 16 | 10 | 244 | 3 | 270 | 6.69e-16 | 77.0 |
| Msa1069180 | MtrunA17_Chr7g0251081 | 60.714 | 56 | 19 | 2 | 192 | 244 | 2 | 57 | 1.62e-11 | 63.5 |
| Msa1069180 | MtrunA17_Chr6g0483901 | 27.624 | 181 | 122 | 7 | 3 | 180 | 6 | 180 | 4.43e-11 | 61.6 |
| Msa1069180 | MtrunA17_Chr6g0484051 | 30.952 | 126 | 79 | 5 | 35 | 157 | 37 | 157 | 8.91e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069180 | AT5G38260.1 | 28.125 | 256 | 126 | 12 | 16 | 224 | 14 | 258 | 2.01e-18 | 84.7 |
| Msa1069180 | AT5G38210.2 | 28.455 | 246 | 126 | 12 | 26 | 228 | 23 | 261 | 4.30e-17 | 80.9 |
| Msa1069180 | AT5G38210.3 | 28.049 | 246 | 127 | 12 | 26 | 228 | 5 | 243 | 4.51e-17 | 80.9 |
| Msa1069180 | AT1G66930.2 | 25.221 | 226 | 135 | 6 | 40 | 238 | 33 | 251 | 5.20e-13 | 68.9 |
| Msa1069180 | AT1G66920.3 | 27.358 | 212 | 125 | 5 | 40 | 226 | 33 | 240 | 2.52e-12 | 66.6 |
| Msa1069180 | AT1G66920.2 | 27.358 | 212 | 125 | 5 | 40 | 226 | 33 | 240 | 2.63e-12 | 66.6 |
| Msa1069180 | AT1G66920.1 | 27.397 | 219 | 127 | 6 | 40 | 230 | 33 | 247 | 4.17e-12 | 65.9 |
Find 42 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTGAGATTCCGATTT+TGG | 0.156106 | 7_2:-64703029 | Msa1069180:CDS |
| CAAATCTAGAATATCCCTTC+TGG | 0.285079 | 7_2:-64703339 | Msa1069180:CDS |
| TCGCATGTAAGCTTCATATT+AGG | 0.298911 | 7_2:+64703280 | None:intergenic |
| ACGAAATTTATTGTTATCTT+CGG | 0.326364 | 7_2:+64703247 | None:intergenic |
| TTCAAATGTTTCTGTAAGAA+TGG | 0.376168 | 7_2:-64702860 | Msa1069180:CDS |
| TATTTACATACTTGAGGATA+AGG | 0.377008 | 7_2:+64702805 | None:intergenic |
| GAGTTGCAAGAGATGATTAC+TGG | 0.378148 | 7_2:-64703180 | Msa1069180:CDS |
| CATTGTTCCATTCAAGAATA+CGG | 0.382774 | 7_2:+64703218 | None:intergenic |
| CGAAATTTATTGTTATCTTC+GGG | 0.389141 | 7_2:+64703248 | None:intergenic |
| GATGATTGAGATCATCAATA+TGG | 0.391084 | 7_2:+64703441 | None:intergenic |
| GCAGCTTGAGTTTCCAAAAT+CGG | 0.398664 | 7_2:+64703016 | None:intergenic |
| ATTTACATACTTGAGGATAA+GGG | 0.421837 | 7_2:+64702806 | None:intergenic |
| TGAAATACCGTATTCTTGAA+TGG | 0.432975 | 7_2:-64703225 | Msa1069180:CDS |
| TTGAATTGTAGGGTCAAAAC+GGG | 0.434797 | 7_2:-64701943 | Msa1069180:intron |
| TGTGGCAACGATGGAGGAAT+TGG | 0.436587 | 7_2:-64702884 | Msa1069180:CDS |
| GACAGGAGGTTAATTGTGAT+TGG | 0.443602 | 7_2:-64701921 | Msa1069180:CDS |
| TGTCAGAAGTGTGTTGCTTC+CGG | 0.449412 | 7_2:-64702914 | Msa1069180:CDS |
| AAATCTAGAATATCCCTTCT+GGG | 0.449611 | 7_2:-64703338 | Msa1069180:CDS |
| TGTAAACCAAGCATTGGAAA+AGG | 0.466088 | 7_2:-64702972 | Msa1069180:CDS |
| TTTGAATTGTAGGGTCAAAA+CGG | 0.474194 | 7_2:-64701944 | Msa1069180:intron |
| TTATCATCACAAATACACTT+TGG | 0.503556 | 7_2:+64703412 | None:intergenic |
| GTAAACCAAGCATTGGAAAA+GGG | 0.506670 | 7_2:-64702971 | Msa1069180:CDS |
| TAATGATGTAAACCAAGCAT+TGG | 0.525085 | 7_2:-64702978 | Msa1069180:CDS |
| CCCTTCTGGGGAGAAAATAG+AGG | 0.530356 | 7_2:-64703325 | Msa1069180:CDS |
| TTGTAGGGTCAAAACGGGAC+AGG | 0.550846 | 7_2:-64701938 | Msa1069180:intron |
| ATCGTTGCCACACACTCCAC+CGG | 0.555591 | 7_2:+64702895 | None:intergenic |
| GAAGAAGAATGATGAAGCAA+AGG | 0.557505 | 7_2:+64703484 | None:intergenic |
| GAAAATAGAGGAAATTATTG+TGG | 0.566509 | 7_2:-64703313 | Msa1069180:CDS |
| GGAGTAAAAGAAAATAACAA+TGG | 0.577410 | 7_2:+64703462 | None:intergenic |
| CAGAAGTGTGTTGCTTCCGG+TGG | 0.582755 | 7_2:-64702911 | Msa1069180:CDS |
| TGTAAGCTTCATATTAGGAT+CGG | 0.588723 | 7_2:+64703285 | None:intergenic |
| GTTCTTATGATTGTCACTCA+AGG | 0.593440 | 7_2:+64703144 | None:intergenic |
| GGAATCTCAACAACACTCCT+CGG | 0.594073 | 7_2:+64703037 | None:intergenic |
| AATATGAAGCTTACATGCGA+AGG | 0.595386 | 7_2:-64703277 | Msa1069180:CDS |
| ATACTTGAGGATAAGGGCAA+TGG | 0.611507 | 7_2:+64702812 | None:intergenic |
| GGTGGAGTGTGTGGCAACGA+TGG | 0.611590 | 7_2:-64702893 | Msa1069180:CDS |
| AATCTAGAATATCCCTTCTG+GGG | 0.624899 | 7_2:-64703337 | Msa1069180:CDS |
| GTTGCTTCCGGTGGAGTGTG+TGG | 0.632784 | 7_2:-64702902 | Msa1069180:CDS |
| TAGGGTCAAAACGGGACAGG+AGG | 0.651961 | 7_2:-64701935 | Msa1069180:CDS |
| GGAGTGTGTGGCAACGATGG+AGG | 0.669717 | 7_2:-64702890 | Msa1069180:CDS |
| CAATGGTGAACTGCATGTAG+TGG | 0.693176 | 7_2:+64702829 | None:intergenic |
| ATTACAATACAAGTTTACCG+AGG | 0.716058 | 7_2:-64703054 | Msa1069180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAGAAAAAAAAATATAT+AGG | + | chr7_2:64702619-64702638 | None:intergenic | 10.0% |
| !! | ATATCAAAATAAAATTGAAT+TGG | - | chr7_2:64702887-64702906 | Msa1069180:CDS | 10.0% |
| !!! | ACTATATTTTTTAATAAATG+AGG | + | chr7_2:64702977-64702996 | None:intergenic | 10.0% |
| !! | TTGTAGAAAAAAAAATATAT+AGG | + | chr7_2:64702619-64702638 | None:intergenic | 10.0% |
| !! | ATATCAAAATAAAATTGAAT+TGG | - | chr7_2:64702887-64702906 | Msa1069180:CDS | 10.0% |
| !!! | ACTATATTTTTTAATAAATG+AGG | + | chr7_2:64702977-64702996 | None:intergenic | 10.0% |
| !!! | TAATTTGATTTTTGAATTGT+AGG | - | chr7_2:64703426-64703445 | Msa1069180:CDS | 15.0% |
| !!! | AATTTGATTTTTGAATTGTA+GGG | - | chr7_2:64703427-64703446 | Msa1069180:CDS | 15.0% |
| !!! | TAATTTGATTTTTGAATTGT+AGG | - | chr7_2:64703426-64703445 | Msa1069180:CDS | 15.0% |
| !!! | AATTTGATTTTTGAATTGTA+GGG | - | chr7_2:64703427-64703446 | Msa1069180:CDS | 15.0% |
| !! | ACGAAATTTATTGTTATCTT+CGG | + | chr7_2:64702136-64702155 | None:intergenic | 20.0% |
| !! | AACAAAATAAAGAAACTTTC+AGG | + | chr7_2:64702713-64702732 | None:intergenic | 20.0% |
| !! | AAGTAGTTATATGTTTGTAT+AGG | - | chr7_2:64703154-64703173 | Msa1069180:CDS | 20.0% |
| !! | ACGAAATTTATTGTTATCTT+CGG | + | chr7_2:64702136-64702155 | None:intergenic | 20.0% |
| !! | AACAAAATAAAGAAACTTTC+AGG | + | chr7_2:64702713-64702732 | None:intergenic | 20.0% |
| !! | AAGTAGTTATATGTTTGTAT+AGG | - | chr7_2:64703154-64703173 | Msa1069180:CDS | 20.0% |
| ! | GGAGTAAAAGAAAATAACAA+TGG | + | chr7_2:64701921-64701940 | None:intergenic | 25.0% |
| ! | TTATCATCACAAATACACTT+TGG | + | chr7_2:64701971-64701990 | None:intergenic | 25.0% |
| ! | GAAAATAGAGGAAATTATTG+TGG | - | chr7_2:64702067-64702086 | Msa1069180:intron | 25.0% |
| ! | CGAAATTTATTGTTATCTTC+GGG | + | chr7_2:64702135-64702154 | None:intergenic | 25.0% |
| !! | TTCAAATGTTTCTGTAAGAA+TGG | - | chr7_2:64702520-64702539 | Msa1069180:intron | 25.0% |
| ! | ATTTACATACTTGAGGATAA+GGG | + | chr7_2:64702577-64702596 | None:intergenic | 25.0% |
| ! | TATTTACATACTTGAGGATA+AGG | + | chr7_2:64702578-64702597 | None:intergenic | 25.0% |
| ! | CGATAATATTTACATACTTG+AGG | + | chr7_2:64702584-64702603 | None:intergenic | 25.0% |
| ! | ATTGCTTAATGTATAGTGAA+AGG | - | chr7_2:64702681-64702700 | Msa1069180:intron | 25.0% |
| !!! | GGTAATTAGACATTACTTTT+TGG | - | chr7_2:64702829-64702848 | Msa1069180:CDS | 25.0% |
| !!! | CATTCATGTTGATTTTGATA+GGG | + | chr7_2:64703219-64703238 | None:intergenic | 25.0% |
| !!! | ACATTCATGTTGATTTTGAT+AGG | + | chr7_2:64703220-64703239 | None:intergenic | 25.0% |
| !! | AGCAAATTTTGGATGTTTTT+GGG | + | chr7_2:64703264-64703283 | None:intergenic | 25.0% |
| !! | TTTGATGAAAGAGCAAATTT+TGG | + | chr7_2:64703275-64703294 | None:intergenic | 25.0% |
| ! | GGAGTAAAAGAAAATAACAA+TGG | + | chr7_2:64701921-64701940 | None:intergenic | 25.0% |
| ! | TTATCATCACAAATACACTT+TGG | + | chr7_2:64701971-64701990 | None:intergenic | 25.0% |
| ! | GAAAATAGAGGAAATTATTG+TGG | - | chr7_2:64702067-64702086 | Msa1069180:intron | 25.0% |
| ! | CGAAATTTATTGTTATCTTC+GGG | + | chr7_2:64702135-64702154 | None:intergenic | 25.0% |
| !! | TTCAAATGTTTCTGTAAGAA+TGG | - | chr7_2:64702520-64702539 | Msa1069180:intron | 25.0% |
| ! | ATTTACATACTTGAGGATAA+GGG | + | chr7_2:64702577-64702596 | None:intergenic | 25.0% |
| ! | TATTTACATACTTGAGGATA+AGG | + | chr7_2:64702578-64702597 | None:intergenic | 25.0% |
| ! | CGATAATATTTACATACTTG+AGG | + | chr7_2:64702584-64702603 | None:intergenic | 25.0% |
| ! | ATTGCTTAATGTATAGTGAA+AGG | - | chr7_2:64702681-64702700 | Msa1069180:intron | 25.0% |
| !!! | GGTAATTAGACATTACTTTT+TGG | - | chr7_2:64702829-64702848 | Msa1069180:CDS | 25.0% |
| !!! | CATTCATGTTGATTTTGATA+GGG | + | chr7_2:64703219-64703238 | None:intergenic | 25.0% |
| !!! | ACATTCATGTTGATTTTGAT+AGG | + | chr7_2:64703220-64703239 | None:intergenic | 25.0% |
| !! | AGCAAATTTTGGATGTTTTT+GGG | + | chr7_2:64703264-64703283 | None:intergenic | 25.0% |
| !! | TTTGATGAAAGAGCAAATTT+TGG | + | chr7_2:64703275-64703294 | None:intergenic | 25.0% |
| GATGATTGAGATCATCAATA+TGG | + | chr7_2:64701942-64701961 | None:intergenic | 30.0% | |
| ! | GTTAAAAGTTTTGCTACAGT+TGG | + | chr7_2:64702005-64702024 | None:intergenic | 30.0% |
| ! | AAATCTAGAATATCCCTTCT+GGG | - | chr7_2:64702042-64702061 | Msa1069180:intron | 30.0% |
| TGTAAGCTTCATATTAGGAT+CGG | + | chr7_2:64702098-64702117 | None:intergenic | 30.0% | |
| TGAAATACCGTATTCTTGAA+TGG | - | chr7_2:64702155-64702174 | Msa1069180:intron | 30.0% | |
| CATTGTTCCATTCAAGAATA+CGG | + | chr7_2:64702165-64702184 | None:intergenic | 30.0% | |
| !!! | AACACTCTTTTTCAACGTTA+TGG | - | chr7_2:64702271-64702290 | Msa1069180:intron | 30.0% |
| ATTACAATACAAGTTTACCG+AGG | - | chr7_2:64702326-64702345 | Msa1069180:intron | 30.0% | |
| TAATGATGTAAACCAAGCAT+TGG | - | chr7_2:64702402-64702421 | Msa1069180:intron | 30.0% | |
| !!! | AAAAGGGTTTTGAGTTGAAA+TGG | - | chr7_2:64702425-64702444 | Msa1069180:intron | 30.0% |
| AGCAATTTCCTAACACATTA+GGG | + | chr7_2:64702667-64702686 | None:intergenic | 30.0% | |
| AAGCAATTTCCTAACACATT+AGG | + | chr7_2:64702668-64702687 | None:intergenic | 30.0% | |
| !! | TACTTTTTGGTCCTTATGAT+CGG | - | chr7_2:64702842-64702861 | Msa1069180:CDS | 30.0% |
| !! | GCAAATTTTGGATGTTTTTG+GGG | + | chr7_2:64703263-64703282 | None:intergenic | 30.0% |
| ! | GAGCAAATTTTGGATGTTTT+TGG | + | chr7_2:64703265-64703284 | None:intergenic | 30.0% |
| ! | AGTGGCATGTATAAGATTTT+TGG | - | chr7_2:64703310-64703329 | Msa1069180:CDS | 30.0% |
| TGCATTTCTCTACTAAACAA+TGG | - | chr7_2:64703387-64703406 | Msa1069180:CDS | 30.0% | |
| TTTGAATTGTAGGGTCAAAA+CGG | - | chr7_2:64703436-64703455 | Msa1069180:CDS | 30.0% | |
| GATGATTGAGATCATCAATA+TGG | + | chr7_2:64701942-64701961 | None:intergenic | 30.0% | |
| ! | GTTAAAAGTTTTGCTACAGT+TGG | + | chr7_2:64702005-64702024 | None:intergenic | 30.0% |
| ! | AAATCTAGAATATCCCTTCT+GGG | - | chr7_2:64702042-64702061 | Msa1069180:intron | 30.0% |
| TGTAAGCTTCATATTAGGAT+CGG | + | chr7_2:64702098-64702117 | None:intergenic | 30.0% | |
| TGAAATACCGTATTCTTGAA+TGG | - | chr7_2:64702155-64702174 | Msa1069180:intron | 30.0% | |
| CATTGTTCCATTCAAGAATA+CGG | + | chr7_2:64702165-64702184 | None:intergenic | 30.0% | |
| !!! | AACACTCTTTTTCAACGTTA+TGG | - | chr7_2:64702271-64702290 | Msa1069180:intron | 30.0% |
| ATTACAATACAAGTTTACCG+AGG | - | chr7_2:64702326-64702345 | Msa1069180:intron | 30.0% | |
| TAATGATGTAAACCAAGCAT+TGG | - | chr7_2:64702402-64702421 | Msa1069180:intron | 30.0% | |
| !!! | AAAAGGGTTTTGAGTTGAAA+TGG | - | chr7_2:64702425-64702444 | Msa1069180:intron | 30.0% |
| AGCAATTTCCTAACACATTA+GGG | + | chr7_2:64702667-64702686 | None:intergenic | 30.0% | |
| AAGCAATTTCCTAACACATT+AGG | + | chr7_2:64702668-64702687 | None:intergenic | 30.0% | |
| !! | TACTTTTTGGTCCTTATGAT+CGG | - | chr7_2:64702842-64702861 | Msa1069180:CDS | 30.0% |
| !! | GCAAATTTTGGATGTTTTTG+GGG | + | chr7_2:64703263-64703282 | None:intergenic | 30.0% |
| ! | GAGCAAATTTTGGATGTTTT+TGG | + | chr7_2:64703265-64703284 | None:intergenic | 30.0% |
| ! | AGTGGCATGTATAAGATTTT+TGG | - | chr7_2:64703310-64703329 | Msa1069180:CDS | 30.0% |
| TGCATTTCTCTACTAAACAA+TGG | - | chr7_2:64703387-64703406 | Msa1069180:CDS | 30.0% | |
| TTTGAATTGTAGGGTCAAAA+CGG | - | chr7_2:64703436-64703455 | Msa1069180:CDS | 30.0% | |
| GAAGAAGAATGATGAAGCAA+AGG | + | chr7_2:64701899-64701918 | None:intergenic | 35.0% | |
| !! | TTTTGCTACAGTTGGTGTAT+TGG | + | chr7_2:64701997-64702016 | None:intergenic | 35.0% |
| ! | CAAATCTAGAATATCCCTTC+TGG | - | chr7_2:64702041-64702060 | Msa1069180:intron | 35.0% |
| ! | AATCTAGAATATCCCTTCTG+GGG | - | chr7_2:64702043-64702062 | Msa1069180:intron | 35.0% |
| TCGCATGTAAGCTTCATATT+AGG | + | chr7_2:64702103-64702122 | None:intergenic | 35.0% | |
| AATATGAAGCTTACATGCGA+AGG | - | chr7_2:64702103-64702122 | Msa1069180:intron | 35.0% | |
| GTTCTTATGATTGTCACTCA+AGG | + | chr7_2:64702239-64702258 | None:intergenic | 35.0% | |
| ! | TGTTGTTGAGATTCCGATTT+TGG | - | chr7_2:64702351-64702370 | Msa1069180:intron | 35.0% |
| !! | TGTAAACCAAGCATTGGAAA+AGG | - | chr7_2:64702408-64702427 | Msa1069180:intron | 35.0% |
| !! | GTAAACCAAGCATTGGAAAA+GGG | - | chr7_2:64702409-64702428 | Msa1069180:intron | 35.0% |
| AACTTATCCCCTAATGTGTT+AGG | - | chr7_2:64702656-64702675 | Msa1069180:intron | 35.0% | |
| GCAATTTCCTAACACATTAG+GGG | + | chr7_2:64702666-64702685 | None:intergenic | 35.0% | |
| !! | ACTTTTTGGTCCTTATGATC+GGG | - | chr7_2:64702843-64702862 | Msa1069180:CDS | 35.0% |
| AAATTGAGTCATACTCACTC+TGG | - | chr7_2:64702923-64702942 | Msa1069180:CDS | 35.0% | |
| ! | AAAAGAAAGACTGCAGCTTT+TGG | + | chr7_2:64703191-64703210 | None:intergenic | 35.0% |
| AAAGCCTACTAGTACTATAG+TGG | - | chr7_2:64703292-64703311 | Msa1069180:CDS | 35.0% | |
| !! | GGCATGTATAAGATTTTTGG+AGG | - | chr7_2:64703313-64703332 | Msa1069180:CDS | 35.0% |
| TTGAATTGTAGGGTCAAAAC+GGG | - | chr7_2:64703437-64703456 | Msa1069180:CDS | 35.0% | |
| GAAGAAGAATGATGAAGCAA+AGG | + | chr7_2:64701899-64701918 | None:intergenic | 35.0% | |
| !! | TTTTGCTACAGTTGGTGTAT+TGG | + | chr7_2:64701997-64702016 | None:intergenic | 35.0% |
| ! | CAAATCTAGAATATCCCTTC+TGG | - | chr7_2:64702041-64702060 | Msa1069180:intron | 35.0% |
| ! | AATCTAGAATATCCCTTCTG+GGG | - | chr7_2:64702043-64702062 | Msa1069180:intron | 35.0% |
| TCGCATGTAAGCTTCATATT+AGG | + | chr7_2:64702103-64702122 | None:intergenic | 35.0% | |
| AATATGAAGCTTACATGCGA+AGG | - | chr7_2:64702103-64702122 | Msa1069180:intron | 35.0% | |
| GTTCTTATGATTGTCACTCA+AGG | + | chr7_2:64702239-64702258 | None:intergenic | 35.0% | |
| ! | TGTTGTTGAGATTCCGATTT+TGG | - | chr7_2:64702351-64702370 | Msa1069180:intron | 35.0% |
| !! | TGTAAACCAAGCATTGGAAA+AGG | - | chr7_2:64702408-64702427 | Msa1069180:intron | 35.0% |
| !! | GTAAACCAAGCATTGGAAAA+GGG | - | chr7_2:64702409-64702428 | Msa1069180:intron | 35.0% |
| AACTTATCCCCTAATGTGTT+AGG | - | chr7_2:64702656-64702675 | Msa1069180:intron | 35.0% | |
| GCAATTTCCTAACACATTAG+GGG | + | chr7_2:64702666-64702685 | None:intergenic | 35.0% | |
| !! | ACTTTTTGGTCCTTATGATC+GGG | - | chr7_2:64702843-64702862 | Msa1069180:CDS | 35.0% |
| AAATTGAGTCATACTCACTC+TGG | - | chr7_2:64702923-64702942 | Msa1069180:CDS | 35.0% | |
| ! | AAAAGAAAGACTGCAGCTTT+TGG | + | chr7_2:64703191-64703210 | None:intergenic | 35.0% |
| AAAGCCTACTAGTACTATAG+TGG | - | chr7_2:64703292-64703311 | Msa1069180:CDS | 35.0% | |
| !! | GGCATGTATAAGATTTTTGG+AGG | - | chr7_2:64703313-64703332 | Msa1069180:CDS | 35.0% |
| TTGAATTGTAGGGTCAAAAC+GGG | - | chr7_2:64703437-64703456 | Msa1069180:CDS | 35.0% | |
| GAGTTGCAAGAGATGATTAC+TGG | - | chr7_2:64702200-64702219 | Msa1069180:intron | 40.0% | |
| GCAGCTTGAGTTTCCAAAAT+CGG | + | chr7_2:64702367-64702386 | None:intergenic | 40.0% | |
| ! | CAAAACCCTTTTCCAATGCT+TGG | + | chr7_2:64702417-64702436 | None:intergenic | 40.0% |
| !!! | GGGTTTTGAGTTGAAATGGA+CGG | - | chr7_2:64702429-64702448 | Msa1069180:intron | 40.0% |
| !!! | GGTTTTGAGTTGAAATGGAC+GGG | - | chr7_2:64702430-64702449 | Msa1069180:intron | 40.0% |
| ATACTTGAGGATAAGGGCAA+TGG | + | chr7_2:64702571-64702590 | None:intergenic | 40.0% | |
| GGCTTATGTGTAGAGTTAAG+TGG | - | chr7_2:64702808-64702827 | Msa1069180:intron | 40.0% | |
| CATGCCACTATAGTACTAGT+AGG | + | chr7_2:64703299-64703318 | None:intergenic | 40.0% | |
| GACAGGAGGTTAATTGTGAT+TGG | - | chr7_2:64703459-64703478 | Msa1069180:CDS | 40.0% | |
| GAGTTGCAAGAGATGATTAC+TGG | - | chr7_2:64702200-64702219 | Msa1069180:intron | 40.0% | |
| GCAGCTTGAGTTTCCAAAAT+CGG | + | chr7_2:64702367-64702386 | None:intergenic | 40.0% | |
| ! | CAAAACCCTTTTCCAATGCT+TGG | + | chr7_2:64702417-64702436 | None:intergenic | 40.0% |
| !!! | GGGTTTTGAGTTGAAATGGA+CGG | - | chr7_2:64702429-64702448 | Msa1069180:intron | 40.0% |
| !!! | GGTTTTGAGTTGAAATGGAC+GGG | - | chr7_2:64702430-64702449 | Msa1069180:intron | 40.0% |
| ATACTTGAGGATAAGGGCAA+TGG | + | chr7_2:64702571-64702590 | None:intergenic | 40.0% | |
| GGCTTATGTGTAGAGTTAAG+TGG | - | chr7_2:64702808-64702827 | Msa1069180:intron | 40.0% | |
| CATGCCACTATAGTACTAGT+AGG | + | chr7_2:64703299-64703318 | None:intergenic | 40.0% | |
| GACAGGAGGTTAATTGTGAT+TGG | - | chr7_2:64703459-64703478 | Msa1069180:CDS | 40.0% | |
| ! | CCTCTATTTTCTCCCCAGAA+GGG | + | chr7_2:64702058-64702077 | None:intergenic | 45.0% |
| ! | TCCTCTATTTTCTCCCCAGA+AGG | + | chr7_2:64702059-64702078 | None:intergenic | 45.0% |
| GGAATCTCAACAACACTCCT+CGG | + | chr7_2:64702346-64702365 | None:intergenic | 45.0% | |
| !! | TGTCAGAAGTGTGTTGCTTC+CGG | - | chr7_2:64702466-64702485 | Msa1069180:intron | 45.0% |
| CAATGGTGAACTGCATGTAG+TGG | + | chr7_2:64702554-64702573 | None:intergenic | 45.0% | |
| ! | TGTTGACACCCGTGTTTTCA+TGG | - | chr7_2:64702742-64702761 | Msa1069180:intron | 45.0% |
| TCGCGAAAGCCATGAAAACA+CGG | + | chr7_2:64702754-64702773 | None:intergenic | 45.0% | |
| CGAGATATAGCACTGCTCAA+TGG | - | chr7_2:64702787-64702806 | Msa1069180:intron | 45.0% | |
| ! | AAGTGTTGCTCCCGATCATA+AGG | + | chr7_2:64702856-64702875 | None:intergenic | 45.0% |
| ! | CCTCTATTTTCTCCCCAGAA+GGG | + | chr7_2:64702058-64702077 | None:intergenic | 45.0% |
| ! | TCCTCTATTTTCTCCCCAGA+AGG | + | chr7_2:64702059-64702078 | None:intergenic | 45.0% |
| GGAATCTCAACAACACTCCT+CGG | + | chr7_2:64702346-64702365 | None:intergenic | 45.0% | |
| !! | TGTCAGAAGTGTGTTGCTTC+CGG | - | chr7_2:64702466-64702485 | Msa1069180:intron | 45.0% |
| CAATGGTGAACTGCATGTAG+TGG | + | chr7_2:64702554-64702573 | None:intergenic | 45.0% | |
| ! | TGTTGACACCCGTGTTTTCA+TGG | - | chr7_2:64702742-64702761 | Msa1069180:intron | 45.0% |
| TCGCGAAAGCCATGAAAACA+CGG | + | chr7_2:64702754-64702773 | None:intergenic | 45.0% | |
| CGAGATATAGCACTGCTCAA+TGG | - | chr7_2:64702787-64702806 | Msa1069180:intron | 45.0% | |
| ! | AAGTGTTGCTCCCGATCATA+AGG | + | chr7_2:64702856-64702875 | None:intergenic | 45.0% |
| ! | CCCTTCTGGGGAGAAAATAG+AGG | - | chr7_2:64702055-64702074 | Msa1069180:intron | 50.0% |
| TGTGGCAACGATGGAGGAAT+TGG | - | chr7_2:64702496-64702515 | Msa1069180:intron | 50.0% | |
| CGCGAAAGCCATGAAAACAC+GGG | + | chr7_2:64702753-64702772 | None:intergenic | 50.0% | |
| TTGTAGGGTCAAAACGGGAC+AGG | - | chr7_2:64703442-64703461 | Msa1069180:CDS | 50.0% | |
| ! | CCCTTCTGGGGAGAAAATAG+AGG | - | chr7_2:64702055-64702074 | Msa1069180:intron | 50.0% |
| TGTGGCAACGATGGAGGAAT+TGG | - | chr7_2:64702496-64702515 | Msa1069180:intron | 50.0% | |
| CGCGAAAGCCATGAAAACAC+GGG | + | chr7_2:64702753-64702772 | None:intergenic | 50.0% | |
| TTGTAGGGTCAAAACGGGAC+AGG | - | chr7_2:64703442-64703461 | Msa1069180:CDS | 50.0% | |
| !! | CAGAAGTGTGTTGCTTCCGG+TGG | - | chr7_2:64702469-64702488 | Msa1069180:intron | 55.0% |
| ATCGTTGCCACACACTCCAC+CGG | + | chr7_2:64702488-64702507 | None:intergenic | 55.0% | |
| TAGGGTCAAAACGGGACAGG+AGG | - | chr7_2:64703445-64703464 | Msa1069180:CDS | 55.0% | |
| !! | CAGAAGTGTGTTGCTTCCGG+TGG | - | chr7_2:64702469-64702488 | Msa1069180:intron | 55.0% |
| ATCGTTGCCACACACTCCAC+CGG | + | chr7_2:64702488-64702507 | None:intergenic | 55.0% | |
| TAGGGTCAAAACGGGACAGG+AGG | - | chr7_2:64703445-64703464 | Msa1069180:CDS | 55.0% | |
| GTTGCTTCCGGTGGAGTGTG+TGG | - | chr7_2:64702478-64702497 | Msa1069180:intron | 60.0% | |
| GGTGGAGTGTGTGGCAACGA+TGG | - | chr7_2:64702487-64702506 | Msa1069180:intron | 60.0% | |
| GGAGTGTGTGGCAACGATGG+AGG | - | chr7_2:64702490-64702509 | Msa1069180:intron | 60.0% | |
| GTTGCTTCCGGTGGAGTGTG+TGG | - | chr7_2:64702478-64702497 | Msa1069180:intron | 60.0% | |
| GGTGGAGTGTGTGGCAACGA+TGG | - | chr7_2:64702487-64702506 | Msa1069180:intron | 60.0% | |
| GGAGTGTGTGGCAACGATGG+AGG | - | chr7_2:64702490-64702509 | Msa1069180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 64701890 | 64703512 | 64701890 | ID=Msa1069180;Name=Msa1069180 |
| chr7_2 | mRNA | 64701890 | 64703512 | 64701890 | ID=Msa1069180-mRNA-1;Parent=Msa1069180;Name=Msa1069180-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|253 |
| chr7_2 | exon | 64702816 | 64703512 | 64702816 | ID=Msa1069180-mRNA-1:exon:13526;Parent=Msa1069180-mRNA-1 |
| chr7_2 | exon | 64701890 | 64701954 | 64701890 | ID=Msa1069180-mRNA-1:exon:13525;Parent=Msa1069180-mRNA-1 |
| chr7_2 | CDS | 64702816 | 64703512 | 64702816 | ID=Msa1069180-mRNA-1:cds;Parent=Msa1069180-mRNA-1 |
| chr7_2 | CDS | 64701890 | 64701954 | 64701890 | ID=Msa1069180-mRNA-1:cds;Parent=Msa1069180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
