AlfalfaGEDB | Msa0581920

M. sativa cultivar zhongmu-4 / Msa0581920

KEGG: -
GO: GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581920	XP_003607906.1	97.093	172	5	0	1	172	1	172	5.17e-119	343

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581920	sp\|Q9SSL1\|CAR7_ARATH	55.488	164	73	0	1	164	1	164	2.54e-62	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581920	G7JJZ3	97.093	172	5	0	1	172	1	172	2.47e-119	343

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0581920	-0.831080	2.043950e-55	-8.615850e-47
Msa0008850	Msa0581920	0.824845	6.472421e-54	-8.615850e-47
Msa0032610	Msa0581920	0.839391	1.629937e-57	-8.615850e-47
Msa0038310	Msa0581920	0.837934	3.877556e-57	-8.615850e-47
Msa0044710	Msa0581920	0.818663	1.743027e-52	-8.615850e-47
Msa0047470	Msa0581920	0.804623	1.976530e-49	-8.615850e-47
Msa0055280	Msa0581920	0.801570	8.458886e-49	-8.615850e-47
Msa0068410	Msa0581920	0.804045	2.608354e-49	-8.615850e-47
Msa0069260	Msa0581920	0.827409	1.589467e-54	-8.615850e-47
Msa0069280	Msa0581920	0.814190	1.747756e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581920	MtrunA17_Chr4g0043861	97.093	172	5	0	1	172	1	172	4.75e-123	343
Msa0581920	MtrunA17_Chr1g0160811	66.871	163	53	1	3	164	4	166	1.25e-76	226
Msa0581920	MtrunA17_Chr3g0111361	54.601	163	74	0	1	163	1	163	3.52e-64	194
Msa0581920	MtrunA17_Chr8g0393081	51.220	164	80	0	1	164	17	180	5.77e-58	179
Msa0581920	MtrunA17_Chr2g0280981	51.235	162	79	0	3	164	2	163	1.38e-57	177
Msa0581920	MtrunA17_Chr6g0478401	49.390	164	83	0	1	164	13	176	7.57e-56	174
Msa0581920	MtrunA17_Chr8g0380381	40.000	160	95	1	1	159	85	244	1.73e-36	126
Msa0581920	MtrunA17_Chr8g0352751	37.654	162	100	1	1	161	1	162	2.28e-33	116
Msa0581920	MtrunA17_Chr2g0292461	38.889	162	94	3	1	159	168	327	4.15e-32	117
Msa0581920	MtrunA17_Chr3g0083541	37.952	166	94	2	1	161	239	400	1.72e-30	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581920	AT1G70810.1	55.488	164	73	0	1	164	1	164	2.59e-63	192
Msa0581920	AT1G48590.4	55.090	167	72	1	1	167	6	169	1.21e-61	188
Msa0581920	AT1G48590.1	55.090	167	72	1	1	167	6	169	1.21e-61	188
Msa0581920	AT1G48590.2	55.090	167	72	1	1	167	37	200	1.46e-61	189
Msa0581920	AT1G70790.3	53.659	164	74	1	5	166	6	169	6.87e-60	184
Msa0581920	AT1G70790.2	53.659	164	74	1	5	166	6	169	6.87e-60	184
Msa0581920	AT1G70790.1	53.659	164	74	1	5	166	6	169	6.87e-60	184
Msa0581920	AT3G17980.1	51.829	164	79	0	1	164	13	176	1.34e-58	181
Msa0581920	AT1G23140.1	51.852	162	78	0	1	162	1	162	3.32e-58	179
Msa0581920	AT1G73580.1	48.780	164	84	0	1	164	4	167	5.90e-58	179

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Find 44 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAGGTTGTTAAGGT+TGG	0.510802	4_1:-87480596	Msa0581920:five_prime_UTR
AAGATAACTGCCATCCTGAA+TGG	0.495110	4_1:-87480198	Msa0581920:CDS
AAGTACTAGTCGAAATTGAG+TGG	0.607422	4_1:-87479132	Msa0581920:CDS
AAGTTGTGCATGCAAACACA+AGG	0.715116	4_1:-87480609	Msa0581920:five_prime_UTR
AGATTGAGAAATGTTGACTC+TGG	0.584076	4_1:-87479157	Msa0581920:CDS
AGTAGCTGCGTATGGAGAGA+TGG	0.493455	4_1:-87479205	Msa0581920:CDS
ATATCTCCAATGTGTGAAGA+TGG	0.506001	4_1:-87479302	Msa0581920:CDS
ATCTCCAATGTGTGAAGATG+GGG	0.633945	4_1:-87479300	Msa0581920:CDS
ATCTTCACACATTGGAGATA+TGG	0.313339	4_1:+87479304	None:intergenic
ATGCAAACACAAGGTTGTTA+AGG	0.454129	4_1:-87480600	Msa0581920:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAGACTTCGTATCAAAAA+AGG	-	chr4_1:87479021-87479040	Msa0581920:three_prime_UTR	30.0%
TTCTGCAACTTAAACAAAGT+TGG	+	chr4_1:87479462-87479481	None:intergenic	30.0%
ATCACACAAGTATAAACCAA+AGG	+	chr4_1:87479640-87479659	None:intergenic	30.0%
TGGTTTATACTTGTGTGATT+TGG	-	chr4_1:87479641-87479660	Msa0581920:intron	30.0%
CTCAGTTGAAGATAAGTTTA+AGG	+	chr4_1:87479779-87479798	None:intergenic	30.0%
AAGTAATGTAGCCTAACAAA+TGG	-	chr4_1:87479980-87479999	Msa0581920:intron	30.0%
TGTGATTTAAGCCATTTGTT+AGG	+	chr4_1:87479994-87480013	None:intergenic	30.0%
CGAGCCTAATATTAAATTGT+TGG	-	chr4_1:87480147-87480166	Msa0581920:CDS	30.0%
GCCTAATATTAAATTGTTGG+TGG	-	chr4_1:87480150-87480169	Msa0581920:CDS	30.0%
CTAATGCATAAAGTTAGAGA+AGG	+	chr4_1:87480522-87480541	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	87478920	87480670	87478920	ID=Msa0581920;Name=Msa0581920
chr4_1	mRNA	87478920	87480670	87478920	ID=Msa0581920-mRNA-1;Parent=Msa0581920;Name=Msa0581920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80\|1\|1\|1\|1\|1\|3\|161\|172
chr4_1	exon	87478920	87479392	87478920	ID=Msa0581920-mRNA-1:exon:32515;Parent=Msa0581920-mRNA-1
chr4_1	exon	87480147	87480242	87480147	ID=Msa0581920-mRNA-1:exon:32514;Parent=Msa0581920-mRNA-1
chr4_1	exon	87480480	87480670	87480480	ID=Msa0581920-mRNA-1:exon:32513;Parent=Msa0581920-mRNA-1
chr4_1	five_prime_UTR	87480591	87480670	87480591	ID=Msa0581920-mRNA-1:five_prime_utr;Parent=Msa0581920-mRNA-1
chr4_1	CDS	87480480	87480590	87480480	ID=Msa0581920-mRNA-1:cds;Parent=Msa0581920-mRNA-1
chr4_1	CDS	87480147	87480242	87480147	ID=Msa0581920-mRNA-1:cds;Parent=Msa0581920-mRNA-1
chr4_1	CDS	87479081	87479392	87479081	ID=Msa0581920-mRNA-1:cds;Parent=Msa0581920-mRNA-1
chr4_1	three_prime_UTR	87478920	87479080	87478920	ID=Msa0581920-mRNA-1:three_prime_utr;Parent=Msa0581920-mRNA-1

Gene Sequence

>Msa0581920

ATGGCAAACATTCTAGGTCTTATCAGACTTCGTATCAAAAAAGGCACTAATCTCATACCTCATGATTCTCGTACCAGCGACCCTTATGTTCTTGTCACCATGGAAGAACAAACACTGAAGACTGCTGTTGTGAAAGATAACTGCCATCCTGAATGGAATGAAGAACTGACACTTTACATTAAAGATGTTAACACACCAATACATCTGACAGTTTGCGACAAAGACACTTTCACTGTGGACGACAAAATGGGAGAAGCAGACATAGACATAAAACCATATCTCCAATGTGTGAAGATGGGGTTGAGCGATCTCCCAGATGGACATGTAGTCAAGACTGTTCAACCAGATACGACTAATTGCCTAGCCGAAGAGAGTAGCTGCGTATGGAGAGATGGAAAAGTTGTCCAAGAAATGAGTTTAAGATTGAGAAATGTTGACTCTGGTGAAGTACTAGTCGAAATTGAGTGGATTGATGTTACAGAATCCGAAGGCAAAGGCTTATCCGAGGTTGAGTTTTAG

Protein sequence

>Msa0581920

MANILGLIRLRIKKGTNLIPHDSRTSDPYVLVTMEEQTLKTAVVKDNCHPEWNEELTLYIKDVNTPIHLTVCDKDTFTVDDKMGEADIDIKPYLQCVKMGLSDLPDGHVVKTVQPDTTNCLAEESSCVWRDGKVVQEMSLRLRNVDSGEVLVEIEWIDVTESEGKGLSEVEF*