Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491500 | XP_003598625.1 | 95.760 | 283 | 12 | 0 | 1 | 283 | 1 | 283 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491500 | sp|Q9FLE8|Y5986_ARATH | 48.780 | 164 | 66 | 6 | 115 | 260 | 225 | 388 | 2.14e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491500 | G7IYV7 | 95.760 | 283 | 12 | 0 | 1 | 283 | 1 | 283 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0491500 | -0.823540 | 1.311047e-53 | -8.615850e-47 |
| Msa0000570 | Msa0491500 | -0.806183 | 9.310217e-50 | -8.615850e-47 |
| Msa0003560 | Msa0491500 | 0.832849 | 7.476570e-56 | -8.615850e-47 |
| Msa0032610 | Msa0491500 | 0.806309 | 8.755633e-50 | -8.615850e-47 |
| Msa0058270 | Msa0491500 | 0.827602 | 1.429263e-54 | -8.615850e-47 |
| Msa0071550 | Msa0491500 | 0.821996 | 3.000373e-53 | -8.615850e-47 |
| Msa0071910 | Msa0491500 | -0.821028 | 5.019297e-53 | -8.615850e-47 |
| Msa0085720 | Msa0491500 | 0.831812 | 1.350040e-55 | -8.615850e-47 |
| Msa0120340 | Msa0491500 | 0.811092 | 8.322340e-51 | -8.615850e-47 |
| Msa0124550 | Msa0491500 | 0.803249 | 3.815258e-49 | -8.615850e-47 |
| Msa0130520 | Msa0491500 | 0.810174 | 1.314323e-50 | -8.615850e-47 |
| Msa0134110 | Msa0491500 | -0.803911 | 2.780258e-49 | -8.615850e-47 |
| Msa0140030 | Msa0491500 | 0.825562 | 4.380993e-54 | -8.615850e-47 |
| Msa0141250 | Msa0491500 | 0.805179 | 1.512714e-49 | -8.615850e-47 |
| Msa0175050 | Msa0491500 | 0.824166 | 9.352903e-54 | -8.615850e-47 |
| Msa0187060 | Msa0491500 | 0.807674 | 4.503164e-50 | -8.615850e-47 |
| Msa0223100 | Msa0491500 | 0.809813 | 1.571687e-50 | -8.615850e-47 |
| Msa0223290 | Msa0491500 | 0.825664 | 4.143670e-54 | -8.615850e-47 |
| Msa0223380 | Msa0491500 | 0.857869 | 1.216333e-62 | -8.615850e-47 |
| Msa0365490 | Msa0491500 | 0.886957 | 2.174887e-72 | -8.615850e-47 |
| Msa0388030 | Msa0491500 | -0.855324 | 6.808527e-62 | -8.615850e-47 |
| Msa0389810 | Msa0491500 | 0.845982 | 2.890353e-59 | -8.615850e-47 |
| Msa0404220 | Msa0491500 | 0.801018 | 1.097600e-48 | -8.615850e-47 |
| Msa0444090 | Msa0491500 | 0.856343 | 3.429985e-62 | -8.615850e-47 |
| Msa0458440 | Msa0491500 | 0.844714 | 6.371570e-59 | -8.615850e-47 |
| Msa0464900 | Msa0491500 | 0.847395 | 1.188107e-59 | -8.615850e-47 |
| Msa0465680 | Msa0491500 | -0.812184 | 4.816029e-51 | -8.615850e-47 |
| Msa0468130 | Msa0491500 | 0.846199 | 2.523077e-59 | -8.615850e-47 |
| Msa0473240 | Msa0491500 | 0.807280 | 5.459781e-50 | -8.615850e-47 |
| Msa0482190 | Msa0491500 | -0.802895 | 4.515772e-49 | -8.615850e-47 |
| Msa0266210 | Msa0491500 | 0.833525 | 5.073579e-56 | -8.615850e-47 |
| Msa0279210 | Msa0491500 | -0.837027 | 6.620877e-57 | -8.615850e-47 |
| Msa0279250 | Msa0491500 | -0.814295 | 1.657348e-51 | -8.615850e-47 |
| Msa0287670 | Msa0491500 | 0.832519 | 9.025044e-56 | -8.615850e-47 |
| Msa0288320 | Msa0491500 | 0.802417 | 5.665474e-49 | -8.615850e-47 |
| Msa0304700 | Msa0491500 | 0.817269 | 3.599314e-52 | -8.615850e-47 |
| Msa0314120 | Msa0491500 | 0.824851 | 6.451100e-54 | -8.615850e-47 |
| Msa0318970 | Msa0491500 | -0.831454 | 1.654205e-55 | -8.615850e-47 |
| Msa0335040 | Msa0491500 | 0.805623 | 1.221019e-49 | -8.615850e-47 |
| Msa0349680 | Msa0491500 | 0.805373 | 1.377541e-49 | -8.615850e-47 |
| Msa0362060 | Msa0491500 | 0.813662 | 2.284946e-51 | -8.615850e-47 |
| Msa0363170 | Msa0491500 | 0.801246 | 9.858442e-49 | -8.615850e-47 |
| Msa0489610 | Msa0491500 | 0.807693 | 4.461735e-50 | -8.615850e-47 |
| Msa0491500 | Msa0491520 | 0.934177 | 6.045523e-96 | -8.615850e-47 |
| Msa0491500 | Msa0505060 | 0.840698 | 7.434873e-58 | -8.615850e-47 |
| Msa0491500 | Msa0517490 | 0.802814 | 4.691727e-49 | -8.615850e-47 |
| Msa0491500 | Msa0527250 | 0.802743 | 4.854217e-49 | -8.615850e-47 |
| Msa0491500 | Msa0530650 | 0.829795 | 4.214653e-55 | -8.615850e-47 |
| Msa0491500 | Msa0558690 | 0.803533 | 3.331549e-49 | -8.615850e-47 |
| Msa0491500 | Msa0561130 | -0.802810 | 4.700731e-49 | -8.615850e-47 |
| Msa0491500 | Msa0581920 | 0.858789 | 6.471414e-63 | -8.615850e-47 |
| Msa0491500 | Msa0587190 | 0.840689 | 7.474943e-58 | -8.615850e-47 |
| Msa0491500 | Msa0610770 | 0.806025 | 1.004835e-49 | -8.615850e-47 |
| Msa0491500 | Msa0613460 | 0.802664 | 5.039198e-49 | -8.615850e-47 |
| Msa0491500 | Msa0615270 | -0.809066 | 2.273121e-50 | -8.615850e-47 |
| Msa0491500 | Msa0625840 | -0.807362 | 5.245878e-50 | -8.615850e-47 |
| Msa0491500 | Msa0626990 | 0.822430 | 2.379244e-53 | -8.615850e-47 |
| Msa0491500 | Msa0627350 | 0.830730 | 2.490783e-55 | -8.615850e-47 |
| Msa0491500 | Msa0638280 | 0.801591 | 8.377157e-49 | -8.615850e-47 |
| Msa0491500 | Msa0651320 | 0.823645 | 1.239175e-53 | -8.615850e-47 |
| Msa0491500 | Msa0654010 | 0.813619 | 2.335475e-51 | -8.615850e-47 |
| Msa0491500 | Msa0660300 | 0.829620 | 4.649689e-55 | -8.615850e-47 |
| Msa0491500 | Msa0679550 | 0.855008 | 8.412515e-62 | -8.615850e-47 |
| Msa0491500 | Msa0693490 | 0.803492 | 3.397738e-49 | -8.615850e-47 |
| Msa0491500 | Msa0694250 | 0.828054 | 1.112546e-54 | -8.615850e-47 |
| Msa0491500 | Msa0724560 | 0.801883 | 7.296541e-49 | -8.615850e-47 |
| Msa0491500 | Msa0724950 | 0.816203 | 6.241270e-52 | -8.615850e-47 |
| Msa0491500 | Msa0751210 | 0.814121 | 1.810527e-51 | -8.615850e-47 |
| Msa0491500 | Msa0755080 | 0.806264 | 8.949265e-50 | -8.615850e-47 |
| Msa0491500 | Msa0763080 | 0.821188 | 4.610866e-53 | -8.615850e-47 |
| Msa0491500 | Msa0794320 | 0.812393 | 4.336567e-51 | -8.615850e-47 |
| Msa0491500 | Msa0799060 | 0.829608 | 4.679580e-55 | -8.615850e-47 |
| Msa0491500 | Msa0818110 | 0.819688 | 1.018318e-52 | -8.615850e-47 |
| Msa0491500 | Msa0827470 | 0.889753 | 1.825914e-73 | -8.615850e-47 |
| Msa0491500 | Msa0834450 | 0.816933 | 4.283909e-52 | -8.615850e-47 |
| Msa0491500 | Msa0845070 | 0.828773 | 7.460605e-55 | -8.615850e-47 |
| Msa0491500 | Msa0864470 | -0.807894 | 4.043336e-50 | -8.615850e-47 |
| Msa0491500 | Msa0876360 | 0.807128 | 5.880421e-50 | -8.615850e-47 |
| Msa0491500 | Msa0908170 | 0.836582 | 8.601678e-57 | -8.615850e-47 |
| Msa0491500 | Msa0946080 | 0.807158 | 5.793448e-50 | -8.615850e-47 |
| Msa0491500 | Msa0959010 | 0.808093 | 3.669190e-50 | -8.615850e-47 |
| Msa0491500 | Msa0961490 | 0.805207 | 1.492003e-49 | -8.615850e-47 |
| Msa0491500 | Msa0964130 | 0.808408 | 3.143590e-50 | -8.615850e-47 |
| Msa0491500 | Msa0965520 | 0.802541 | 5.343076e-49 | -8.615850e-47 |
| Msa0491500 | Msa0978700 | 0.804962 | 1.678997e-49 | -8.615850e-47 |
| Msa0491500 | Msa0982270 | 0.840904 | 6.566652e-58 | -8.615850e-47 |
| Msa0491500 | Msa0992490 | -0.800509 | 1.394170e-48 | -8.615850e-47 |
| Msa0491500 | Msa0993530 | 0.801893 | 7.261844e-49 | -8.615850e-47 |
| Msa0491500 | Msa0999960 | -0.806349 | 8.588716e-50 | -8.615850e-47 |
| Msa0491500 | Msa1021340 | 0.802450 | 5.577137e-49 | -8.615850e-47 |
| Msa0491500 | Msa1026760 | 0.801357 | 9.356527e-49 | -8.615850e-47 |
| Msa0491500 | Msa1029080 | -0.801732 | 7.837082e-49 | -8.615850e-47 |
| Msa0491500 | Msa1037700 | -0.817829 | 2.691095e-52 | -8.615850e-47 |
| Msa0491500 | Msa1039880 | 0.808460 | 3.063080e-50 | -8.615850e-47 |
| Msa0491500 | Msa1047720 | 0.803269 | 3.779222e-49 | -8.615850e-47 |
| Msa0491500 | Msa1069180 | 0.825057 | 5.769119e-54 | -8.615850e-47 |
| Msa0491500 | Msa1073070 | -0.817464 | 3.253227e-52 | -8.615850e-47 |
| Msa0491500 | Msa1085920 | 0.801064 | 1.073782e-48 | -8.615850e-47 |
| Msa0491500 | Msa1092090 | 0.835528 | 1.592662e-56 | -8.615850e-47 |
| Msa0491500 | Msa1109820 | 0.817993 | 2.471370e-52 | -8.615850e-47 |
| Msa0491500 | Msa1120620 | 0.808833 | 2.550775e-50 | -8.615850e-47 |
| Msa0491500 | Msa1130210 | -0.823326 | 1.471243e-53 | -8.615850e-47 |
| Msa0491500 | Msa1136130 | 0.802556 | 5.303524e-49 | -8.615850e-47 |
| Msa0491500 | Msa1157020 | 0.839981 | 1.144755e-57 | -8.615850e-47 |
| Msa0491500 | Msa1160770 | -0.800796 | 1.218238e-48 | -8.615850e-47 |
| Msa0491500 | Msa1174310 | 0.840422 | 8.777494e-58 | -8.615850e-47 |
| Msa0491500 | Msa1207460 | -0.846807 | 1.722227e-59 | -8.615850e-47 |
| Msa0491500 | Msa1222280 | 0.807280 | 5.459782e-50 | -8.615850e-47 |
| Msa0491500 | Msa1228160 | -0.856327 | 3.467517e-62 | -8.615850e-47 |
| Msa0491500 | Msa1229850 | 0.800039 | 1.737602e-48 | -8.615850e-47 |
| Msa0491500 | Msa1233500 | 0.811812 | 5.806715e-51 | -8.615850e-47 |
| Msa0491500 | Msa1235400 | 0.830795 | 2.401225e-55 | -8.615850e-47 |
| Msa0491500 | Msa1236070 | -0.825544 | 4.423352e-54 | -8.615850e-47 |
| Msa0491500 | Msa1264860 | -0.800528 | 1.381861e-48 | -8.615850e-47 |
| Msa0491500 | Msa1300350 | -0.816567 | 5.173727e-52 | -8.615850e-47 |
| Msa0491500 | Msa1306750 | 0.850286 | 1.872741e-60 | -8.615850e-47 |
| Msa0491500 | Msa1307740 | 0.842655 | 2.265358e-58 | -8.615850e-47 |
| Msa0491500 | Msa1308330 | -0.816172 | 6.343253e-52 | -8.615850e-47 |
| Msa0491500 | Msa1314770 | 0.856590 | 2.902081e-62 | -8.615850e-47 |
| Msa0491500 | Msa1322190 | 0.814686 | 1.357695e-51 | -8.615850e-47 |
| Msa0491500 | Msa1350690 | 0.833700 | 4.587950e-56 | -8.615850e-47 |
| Msa0491500 | Msa1360280 | 0.803314 | 3.698105e-49 | -8.615850e-47 |
| Msa0491500 | Msa1369530 | 0.818282 | 2.126324e-52 | -8.615850e-47 |
| Msa0491500 | Msa1371580 | 0.801719 | 7.884678e-49 | -8.615850e-47 |
| Msa0491500 | Msa1373350 | 0.841583 | 4.352631e-58 | -8.615850e-47 |
| Msa0491500 | Msa1379710 | 0.814589 | 1.426802e-51 | -8.615850e-47 |
| Msa0491500 | Msa1393040 | 0.805344 | 1.396990e-49 | -8.615850e-47 |
| Msa0491500 | Msa1422840 | 0.818256 | 2.154967e-52 | -8.615850e-47 |
| Msa0491500 | Msa1444250 | -0.808681 | 2.748423e-50 | -8.615850e-47 |
| Msa0491500 | Msa1445420 | -0.800233 | 1.586707e-48 | -8.615850e-47 |
| Msa0491500 | Msa1451620 | -0.804559 | 2.038323e-49 | -8.615850e-47 |
| Msa0491500 | Msa1459760 | -0.837837 | 4.105676e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491500 | MtrunA17_Chr3g0083531 | 95.760 | 283 | 12 | 0 | 1 | 283 | 1 | 283 | 0.0 | 554 |
| Msa0491500 | MtrunA17_Chr8g0352771 | 52.830 | 265 | 102 | 3 | 2 | 263 | 13 | 257 | 4.20e-87 | 260 |
| Msa0491500 | MtrunA17_Chr7g0256501 | 63.816 | 152 | 54 | 1 | 110 | 260 | 273 | 424 | 1.99e-69 | 221 |
| Msa0491500 | MtrunA17_Chr1g0171871 | 60.000 | 160 | 55 | 1 | 110 | 260 | 204 | 363 | 6.62e-67 | 212 |
| Msa0491500 | MtrunA17_Chr3g0105871 | 41.743 | 218 | 115 | 6 | 55 | 262 | 19 | 234 | 2.61e-50 | 166 |
| Msa0491500 | MtrunA17_Chr5g0437471 | 53.061 | 147 | 67 | 2 | 114 | 260 | 94 | 238 | 3.72e-49 | 163 |
| Msa0491500 | MtrunA17_Chr5g0431071 | 48.649 | 148 | 74 | 2 | 113 | 260 | 108 | 253 | 8.72e-46 | 155 |
| Msa0491500 | MtrunA17_Chr3g0113971 | 51.389 | 144 | 68 | 2 | 117 | 260 | 93 | 234 | 2.13e-45 | 153 |
| Msa0491500 | MtrunA17_Chr7g0266401 | 45.946 | 148 | 78 | 1 | 113 | 260 | 259 | 404 | 9.48e-41 | 145 |
| Msa0491500 | MtrunA17_Chr1g0196971 | 46.309 | 149 | 78 | 2 | 113 | 261 | 223 | 369 | 5.36e-40 | 142 |
| Msa0491500 | MtrunA17_Chr7g0267591 | 45.513 | 156 | 74 | 3 | 115 | 261 | 126 | 279 | 6.90e-40 | 140 |
| Msa0491500 | MtrunA17_Chr8g0388481 | 45.223 | 157 | 77 | 3 | 112 | 260 | 212 | 367 | 1.07e-36 | 134 |
| Msa0491500 | MtrunA17_Chr8g0392761 | 45.161 | 155 | 80 | 2 | 112 | 261 | 120 | 274 | 1.84e-36 | 131 |
| Msa0491500 | MtrunA17_Chr7g0217121 | 44.242 | 165 | 73 | 3 | 115 | 260 | 267 | 431 | 2.98e-35 | 131 |
| Msa0491500 | MtrunA17_Chr6g0453031 | 41.618 | 173 | 81 | 6 | 108 | 260 | 250 | 422 | 1.11e-34 | 129 |
| Msa0491500 | MtrunA17_Chr3g0089011 | 37.255 | 153 | 78 | 3 | 127 | 261 | 2 | 154 | 9.77e-24 | 94.4 |
| Msa0491500 | MtrunA17_Chr5g0412021 | 35.484 | 93 | 53 | 2 | 155 | 240 | 1 | 93 | 7.28e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491500 | AT5G13810.1 | 55.303 | 264 | 97 | 4 | 6 | 261 | 23 | 273 | 4.13e-95 | 281 |
| Msa0491500 | AT3G57070.1 | 43.902 | 246 | 124 | 5 | 20 | 260 | 179 | 415 | 1.53e-55 | 185 |
| Msa0491500 | AT2G41330.1 | 55.828 | 163 | 70 | 2 | 100 | 260 | 239 | 401 | 8.26e-55 | 182 |
| Msa0491500 | AT5G58530.1 | 45.000 | 200 | 94 | 5 | 75 | 261 | 70 | 266 | 6.35e-50 | 166 |
| Msa0491500 | AT5G39865.1 | 48.780 | 164 | 66 | 6 | 115 | 260 | 225 | 388 | 2.18e-42 | 150 |
| Msa0491500 | AT5G06470.1 | 41.618 | 173 | 86 | 4 | 101 | 261 | 70 | 239 | 5.39e-40 | 139 |
| Msa0491500 | AT3G28850.1 | 42.614 | 176 | 71 | 3 | 115 | 260 | 251 | 426 | 1.14e-38 | 140 |
| Msa0491500 | AT1G32760.1 | 49.689 | 161 | 73 | 4 | 109 | 261 | 154 | 314 | 2.14e-38 | 137 |
| Msa0491500 | AT4G10630.1 | 46.584 | 161 | 74 | 4 | 113 | 261 | 174 | 334 | 2.47e-38 | 137 |
| Msa0491500 | AT3G11773.1 | 46.479 | 142 | 73 | 3 | 120 | 261 | 12 | 150 | 4.41e-36 | 126 |
| Msa0491500 | AT5G03870.1 | 44.667 | 150 | 82 | 1 | 113 | 261 | 235 | 384 | 2.31e-35 | 131 |
| Msa0491500 | AT1G64500.1 | 43.421 | 152 | 78 | 3 | 117 | 260 | 214 | 365 | 3.43e-34 | 127 |
| Msa0491500 | AT5G01420.1 | 43.333 | 150 | 82 | 3 | 113 | 261 | 254 | 401 | 7.46e-32 | 122 |
| Msa0491500 | AT3G11773.2 | 47.321 | 112 | 56 | 3 | 150 | 261 | 92 | 200 | 5.89e-26 | 102 |
Find 77 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 3_4:+14254019 | Msa0491500:CDS |
| ACCAGAGAATAGGAGGAAAA+AGG | 0.235703 | 3_4:-14255898 | None:intergenic |
| TTATATTACCGAAGCGATTA+TGG | 0.248626 | 3_4:+14255669 | Msa0491500:three_prime_UTR |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.268180 | 3_4:+14255530 | Msa0491500:CDS |
| GTTGTTGTTGTTTATGTAGT+TGG | 0.273345 | 3_4:-14253286 | None:intergenic |
| ATTAAACATAACTGCAAAAC+TGG | 0.316340 | 3_4:+14255787 | Msa0491500:three_prime_UTR |
| CCACGTGCGGCTTCGAAGTT+AGG | 0.339185 | 3_4:+14253852 | Msa0491500:CDS |
| CTACCTCAAGTGTTCGTTAG+AGG | 0.363674 | 3_4:+14255281 | Msa0491500:CDS |
| AGGATTTGAAAGAAAGAAGT+TGG | 0.382704 | 3_4:-14253326 | None:intergenic |
| ATGAAGCGGGGATGTTGTTC+CGG | 0.396172 | 3_4:+14253904 | Msa0491500:CDS |
| ATTAAGTCTCTATTTGAAAC+TGG | 0.396574 | 3_4:+14255329 | Msa0491500:CDS |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.412980 | 3_4:+14254070 | Msa0491500:CDS |
| CTTCGAAGCCGCACGTGGTT+CGG | 0.416891 | 3_4:-14253847 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 3_4:+14255342 | Msa0491500:CDS |
| TTAGGTCAGAAGCCGCGTTC+TGG | 0.417750 | 3_4:+14253870 | Msa0491500:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 3_4:+14254043 | Msa0491500:CDS |
| ACAAAACAAAACGATGTTCA+TGG | 0.423170 | 3_4:-14255734 | None:intergenic |
| TCAGAAGCCGCGTTCTGGTT+CGG | 0.442103 | 3_4:+14253875 | Msa0491500:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 3_4:-14253840 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 3_4:-14255381 | None:intergenic |
| GGGGATGTTGTTCCGGTTGG+CGG | 0.448187 | 3_4:+14253911 | Msa0491500:CDS |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 3_4:-14255380 | None:intergenic |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 3_4:+14253704 | Msa0491500:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 3_4:+14253974 | Msa0491500:CDS |
| AAAACACAACACCAGAGAAT+AGG | 0.471631 | 3_4:-14255908 | None:intergenic |
| CAACTTTCGCAAACAAAGCC+AGG | 0.474869 | 3_4:-14255392 | None:intergenic |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 3_4:-14255543 | None:intergenic |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 3_4:+14255241 | Msa0491500:intron |
| GCGAAAGTTGTGGCGATGCT+AGG | 0.476444 | 3_4:+14255405 | Msa0491500:CDS |
| ATCATCTCTACGTGGAAGAA+TGG | 0.484954 | 3_4:+14253737 | Msa0491500:CDS |
| CGGTCTAGAAACTCGTTGAA+TGG | 0.485509 | 3_4:-14253669 | None:intergenic |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 3_4:-14253694 | None:intergenic |
| GATCATCAGCATCCGCCAAC+CGG | 0.490872 | 3_4:-14253923 | None:intergenic |
| GGCTGCAACCATAATCGCTT+CGG | 0.493976 | 3_4:-14255677 | None:intergenic |
| AGCGGGGATGTTGTTCCGGT+TGG | 0.502502 | 3_4:+14253908 | Msa0491500:CDS |
| AGGGTTGTTGAAAAGATGCT+TGG | 0.515319 | 3_4:+14255481 | Msa0491500:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 3_4:+14253839 | Msa0491500:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 3_4:+14255497 | Msa0491500:CDS |
| AACGAGTTTCTAGACCGGTC+CGG | 0.530614 | 3_4:+14253675 | Msa0491500:CDS |
| CTATAGATAATGATAAAGAA+TGG | 0.531876 | 3_4:+14255863 | Msa0491500:three_prime_UTR |
| GTGAGAATTGCAGTGGGAGT+AGG | 0.533959 | 3_4:+14255438 | Msa0491500:CDS |
| GGCTTTGTTTGCGAAAGTTG+TGG | 0.541080 | 3_4:+14255395 | Msa0491500:CDS |
| ATCCTTTATACTGTAAAATG+TGG | 0.543449 | 3_4:+14255598 | Msa0491500:exon |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 3_4:-14253689 | None:intergenic |
| GGTTCGGAAGAAAATGAAGC+GGG | 0.561225 | 3_4:+14253891 | Msa0491500:CDS |
| GGTTGGCGGATGCTGATGAT+CGG | 0.565323 | 3_4:+14253925 | Msa0491500:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 3_4:+14253955 | Msa0491500:CDS |
| GTTAGAGGAAAATACATTGG+TGG | 0.568937 | 3_4:+14255296 | Msa0491500:CDS |
| TTCGTTAGAGGAAAATACAT+TGG | 0.569145 | 3_4:+14255293 | Msa0491500:CDS |
| ACACAACACCAGAGAATAGG+AGG | 0.571294 | 3_4:-14255905 | None:intergenic |
| GTTCTGTGATTATGAAAATG+AGG | 0.571372 | 3_4:+14255559 | Msa0491500:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 3_4:+14255242 | Msa0491500:intron |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 3_4:+14253696 | Msa0491500:CDS |
| ACGTGTGCATCGTGTTTGAT+CGG | 0.601162 | 3_4:-14253623 | None:intergenic |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 3_4:+14253954 | Msa0491500:CDS |
| AAGCGATTATGGTTGCAGCC+CGG | 0.605680 | 3_4:+14255680 | Msa0491500:three_prime_UTR |
| CTCCCACTGCAATTCTCACA+AGG | 0.613824 | 3_4:-14255434 | None:intergenic |
| TACCTTGTGAGAATTGCAGT+GGG | 0.615095 | 3_4:+14255432 | Msa0491500:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.616068 | 3_4:+14255431 | Msa0491500:CDS |
| AAATTATTCGATGAGGACGA+AGG | 0.616456 | 3_4:+14255461 | Msa0491500:CDS |
| AATTATTCGATGAGGACGAA+GGG | 0.626444 | 3_4:+14255462 | Msa0491500:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 3_4:-14255533 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 3_4:+14253932 | Msa0491500:CDS |
| CCTAACTTCGAAGCCGCACG+TGG | 0.643711 | 3_4:-14253852 | None:intergenic |
| GAATTGAAAAGGATTCTCGA+AGG | 0.645661 | 3_4:+14255353 | Msa0491500:CDS |
| CATTCAACGAGTTTCTAGAC+CGG | 0.645792 | 3_4:+14253670 | Msa0491500:CDS |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 3_4:+14255247 | Msa0491500:intron |
| TTCTGTGATTATGAAAATGA+GGG | 0.648644 | 3_4:+14255560 | Msa0491500:CDS |
| AAAGAGTGAAATGAAATGTG+TGG | 0.656253 | 3_4:-14253349 | None:intergenic |
| TGGTTCGGAAGAAAATGAAG+CGG | 0.673544 | 3_4:+14253890 | Msa0491500:CDS |
| TTTCCTCTAACGAACACTTG+AGG | 0.676452 | 3_4:-14255284 | None:intergenic |
| GCAATGAGAATGGACTTGTA+AGG | 0.683440 | 3_4:+14255507 | Msa0491500:CDS |
| GGAATTTAAAACCATGACAG+TGG | 0.692693 | 3_4:+14255701 | Msa0491500:three_prime_UTR |
| GAGTGAAATGAAATGTGTGG+AGG | 0.701200 | 3_4:-14253346 | None:intergenic |
| GAGTAGGAAATTATTCGATG+AGG | 0.731014 | 3_4:+14255454 | Msa0491500:CDS |
| GTTCGGAAGAAAATGAAGCG+GGG | 0.733757 | 3_4:+14253892 | Msa0491500:CDS |
| TCAATGAAATCATCTCTACG+TGG | 0.778466 | 3_4:+14253729 | Msa0491500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTATGTTCTATAT+TGG | - | chr3_4:14255138-14255157 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTGTTTTTGTTTA+TGG | - | chr3_4:14253446-14253465 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGTTTGCAATATT+TGG | - | chr3_4:14253468-14253487 | None:intergenic | 20.0% |
| !!! | AATTTTTACCGATTTAAAGA+TGG | + | chr3_4:14254414-14254433 | Msa0491500:intron | 20.0% |
| !! | AATTGTAACCATCTTTAAAT+CGG | - | chr3_4:14254425-14254444 | None:intergenic | 20.0% |
| !!! | TTACAATTTTTTTCAACGTA+TGG | + | chr3_4:14254437-14254456 | Msa0491500:intron | 20.0% |
| !! | AGACCAAAAAAAAAAAAACT+GGG | - | chr3_4:14254552-14254571 | None:intergenic | 20.0% |
| !! | CTACTAAAAATAAAAACTCA+AGG | - | chr3_4:14254575-14254594 | None:intergenic | 20.0% |
| !!! | AGTTTTTATTTTTAGTAGAC+AGG | + | chr3_4:14254577-14254596 | Msa0491500:intron | 20.0% |
| !!! | GTTTTTATTTTTAGTAGACA+GGG | + | chr3_4:14254578-14254597 | Msa0491500:intron | 20.0% |
| !! | AAATAGAAAAGCTATGAATT+TGG | + | chr3_4:14254829-14254848 | Msa0491500:intron | 20.0% |
| !! | CTATAGATAATGATAAAGAA+TGG | + | chr3_4:14255863-14255882 | Msa0491500:three_prime_UTR | 20.0% |
| !!! | TTTGTTTTTGTTTATGGCTA+TGG | - | chr3_4:14253440-14253459 | None:intergenic | 25.0% |
| !!! | CTGTTAAGATGATTTTGAAA+GGG | + | chr3_4:14254006-14254025 | Msa0491500:CDS | 25.0% |
| ! | CATAAAATGAACAAGAAAGA+AGG | - | chr3_4:14254103-14254122 | None:intergenic | 25.0% |
| !! | TGTTCATTTTATGACATGTA+CGG | + | chr3_4:14254110-14254129 | Msa0491500:intron | 25.0% |
| ! | GGAAATATTTAATGCATGTT+TGG | + | chr3_4:14254131-14254150 | Msa0491500:intron | 25.0% |
| ! | ACATGCATTAAGAAAATTGT+GGG | - | chr3_4:14254238-14254257 | None:intergenic | 25.0% |
| ! | AACATGCATTAAGAAAATTG+TGG | - | chr3_4:14254239-14254258 | None:intergenic | 25.0% |
| ! | ACAAAAAATCGTATGTATGT+CGG | - | chr3_4:14254354-14254373 | None:intergenic | 25.0% |
| !!! | ACATACATACGATTTTTTGT+TGG | + | chr3_4:14254354-14254373 | Msa0491500:intron | 25.0% |
| !!! | TGTCCCAGTTTTTTTTTTTT+TGG | + | chr3_4:14254546-14254565 | Msa0491500:intron | 25.0% |
| ! | GAGACCAAAAAAAAAAAAAC+TGG | - | chr3_4:14254553-14254572 | None:intergenic | 25.0% |
| ! | TGATTGTTGATGCATAATAA+AGG | + | chr3_4:14254623-14254642 | Msa0491500:intron | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | - | chr3_4:14254656-14254675 | None:intergenic | 25.0% |
| ! | ATTCAGCAAAATCAATATGT+GGG | - | chr3_4:14254718-14254737 | None:intergenic | 25.0% |
| ! | AATTCAGCAAAATCAATATG+TGG | - | chr3_4:14254719-14254738 | None:intergenic | 25.0% |
| !! | ATTAAGTCTCTATTTGAAAC+TGG | + | chr3_4:14255329-14255348 | Msa0491500:CDS | 25.0% |
| ! | TTCTGTGATTATGAAAATGA+GGG | + | chr3_4:14255560-14255579 | Msa0491500:CDS | 25.0% |
| ! | ATCCTTTATACTGTAAAATG+TGG | + | chr3_4:14255598-14255617 | Msa0491500:exon | 25.0% |
| ! | ATTAAACATAACTGCAAAAC+TGG | + | chr3_4:14255787-14255806 | Msa0491500:three_prime_UTR | 25.0% |
| !! | GTTGTTGTTGTTTATGTAGT+TGG | - | chr3_4:14253289-14253308 | None:intergenic | 30.0% |
| AGGATTTGAAAGAAAGAAGT+TGG | - | chr3_4:14253329-14253348 | None:intergenic | 30.0% | |
| AAAGAGTGAAATGAAATGTG+TGG | - | chr3_4:14253352-14253371 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTGTTTCTGTTG+AGG | - | chr3_4:14253419-14253438 | None:intergenic | 30.0% |
| ! | GCTGTTAAGATGATTTTGAA+AGG | + | chr3_4:14254005-14254024 | Msa0491500:CDS | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | + | chr3_4:14254012-14254031 | Msa0491500:CDS | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | + | chr3_4:14254013-14254032 | Msa0491500:CDS | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | + | chr3_4:14254043-14254062 | Msa0491500:CDS | 30.0% |
| AATGAACAAGAAAGAAGGTT+TGG | - | chr3_4:14254098-14254117 | None:intergenic | 30.0% | |
| !!! | AGGGTTTTAAATTGTTCTTG+TGG | + | chr3_4:14254597-14254616 | Msa0491500:intron | 30.0% |
| !! | GTTTTAAATTGTTCTTGTGG+TGG | + | chr3_4:14254600-14254619 | Msa0491500:intron | 30.0% |
| ATCTGATATCAAATAACAGC+AGG | + | chr3_4:14254980-14254999 | Msa0491500:intron | 30.0% | |
| TTACAACAAAACATGGACAT+AGG | - | chr3_4:14255184-14255203 | None:intergenic | 30.0% | |
| GTGCATATTACAACAAAACA+TGG | - | chr3_4:14255191-14255210 | None:intergenic | 30.0% | |
| TTCGTTAGAGGAAAATACAT+TGG | + | chr3_4:14255293-14255312 | Msa0491500:CDS | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | + | chr3_4:14255342-14255361 | Msa0491500:CDS | 30.0% | |
| GTTCTGTGATTATGAAAATG+AGG | + | chr3_4:14255559-14255578 | Msa0491500:CDS | 30.0% | |
| ! | TGCCACATTTTACAGTATAA+AGG | - | chr3_4:14255603-14255622 | None:intergenic | 30.0% |
| TTATATTACCGAAGCGATTA+TGG | + | chr3_4:14255669-14255688 | Msa0491500:three_prime_UTR | 30.0% | |
| !!! | ACTGTCATGGTTTTAAATTC+CGG | - | chr3_4:14255702-14255721 | None:intergenic | 30.0% |
| ACAAAACAAAACGATGTTCA+TGG | - | chr3_4:14255737-14255756 | None:intergenic | 30.0% | |
| ! | GTAGAATTTGCTTAACGAAC+CGG | - | chr3_4:14253697-14253716 | None:intergenic | 35.0% |
| GGTTCGTTAAGCAAATTCTA+CGG | + | chr3_4:14253696-14253715 | Msa0491500:CDS | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | + | chr3_4:14253704-14253723 | Msa0491500:CDS | 35.0% | |
| TCAATGAAATCATCTCTACG+TGG | + | chr3_4:14253729-14253748 | Msa0491500:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | + | chr3_4:14253955-14253974 | Msa0491500:CDS | 35.0% | |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | + | chr3_4:14254018-14254037 | Msa0491500:CDS | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | + | chr3_4:14254019-14254038 | Msa0491500:CDS | 35.0% |
| TGCTTTCAGAAAAGAATTGC+AGG | + | chr3_4:14254070-14254089 | Msa0491500:CDS | 35.0% | |
| !! | ATGCATGTTTGTTGTTACGA+TGG | + | chr3_4:14254250-14254269 | Msa0491500:intron | 35.0% |
| TTACGATGGATATGTTAGAG+CGG | + | chr3_4:14254264-14254283 | Msa0491500:intron | 35.0% | |
| !!! | CATACGATTTTTTGTTGGTC+TGG | + | chr3_4:14254359-14254378 | Msa0491500:intron | 35.0% |
| TCAACGTATGGTGAAAAATG+AGG | + | chr3_4:14254449-14254468 | Msa0491500:intron | 35.0% | |
| CAACGTATGGTGAAAAATGA+GGG | + | chr3_4:14254450-14254469 | Msa0491500:intron | 35.0% | |
| GATCAAGATTAGACAACTCA+AGG | - | chr3_4:14254763-14254782 | None:intergenic | 35.0% | |
| ATATGACAATGCTCATATCC+AGG | + | chr3_4:14254785-14254804 | Msa0491500:intron | 35.0% | |
| TCAAATAACAGCAGGAAAAC+CGG | + | chr3_4:14254988-14255007 | Msa0491500:intron | 35.0% | |
| AAAAATTCGCTGCAACTGTA+TGG | - | chr3_4:14255033-14255052 | None:intergenic | 35.0% | |
| GTTAGAGGAAAATACATTGG+TGG | + | chr3_4:14255296-14255315 | Msa0491500:CDS | 35.0% | |
| GAATTGAAAAGGATTCTCGA+AGG | + | chr3_4:14255353-14255372 | Msa0491500:CDS | 35.0% | |
| GAGTAGGAAATTATTCGATG+AGG | + | chr3_4:14255454-14255473 | Msa0491500:CDS | 35.0% | |
| AAATTATTCGATGAGGACGA+AGG | + | chr3_4:14255461-14255480 | Msa0491500:CDS | 35.0% | |
| AATTATTCGATGAGGACGAA+GGG | + | chr3_4:14255462-14255481 | Msa0491500:CDS | 35.0% | |
| !!! | CTGTCATGGTTTTAAATTCC+GGG | - | chr3_4:14255701-14255720 | None:intergenic | 35.0% |
| ! | GGAATTTAAAACCATGACAG+TGG | + | chr3_4:14255701-14255720 | Msa0491500:three_prime_UTR | 35.0% |
| AAAACACAACACCAGAGAAT+AGG | - | chr3_4:14255911-14255930 | None:intergenic | 35.0% | |
| GAGTGAAATGAAATGTGTGG+AGG | - | chr3_4:14253349-14253368 | None:intergenic | 40.0% | |
| !! | CGAATTTTTCGAAGATGTCG+AGG | + | chr3_4:14253586-14253605 | Msa0491500:exon | 40.0% |
| ! | CATTCAACGAGTTTCTAGAC+CGG | + | chr3_4:14253670-14253689 | Msa0491500:CDS | 40.0% |
| ATCATCTCTACGTGGAAGAA+TGG | + | chr3_4:14253737-14253756 | Msa0491500:CDS | 40.0% | |
| ! | AATTCTTTTGTCGTCGTCGT+TGG | - | chr3_4:14253792-14253811 | None:intergenic | 40.0% |
| ! | TGGTTCGGAAGAAAATGAAG+CGG | + | chr3_4:14253890-14253909 | Msa0491500:CDS | 40.0% |
| GTGTATTTGACGAGTTTGAG+AGG | + | chr3_4:14253954-14253973 | Msa0491500:CDS | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | + | chr3_4:14253974-14253993 | Msa0491500:CDS | 40.0% | |
| ! | CTGCATTTAAAGTTGTCACG+AGG | + | chr3_4:14254663-14254682 | Msa0491500:intron | 40.0% |
| TAAAGTTGTCACGAGGTCTT+TGG | + | chr3_4:14254670-14254689 | Msa0491500:intron | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | - | chr3_4:14255287-14255306 | None:intergenic | 40.0% | |
| ATACCTTGTGAGAATTGCAG+TGG | + | chr3_4:14255431-14255450 | Msa0491500:CDS | 40.0% | |
| TACCTTGTGAGAATTGCAGT+GGG | + | chr3_4:14255432-14255451 | Msa0491500:CDS | 40.0% | |
| AGGGTTGTTGAAAAGATGCT+TGG | + | chr3_4:14255481-14255500 | Msa0491500:CDS | 40.0% | |
| ! | GCAATGAGAATGGACTTGTA+AGG | + | chr3_4:14255507-14255526 | Msa0491500:CDS | 40.0% |
| ACAGAACATCATTCCAGAAC+AGG | - | chr3_4:14255546-14255565 | None:intergenic | 40.0% | |
| CCAGAGAATAGGAGGAAAAA+GGG | - | chr3_4:14255900-14255919 | None:intergenic | 40.0% | |
| ACCAGAGAATAGGAGGAAAA+AGG | - | chr3_4:14255901-14255920 | None:intergenic | 40.0% | |
| ACGTGTGCATCGTGTTTGAT+CGG | - | chr3_4:14253626-14253645 | None:intergenic | 45.0% | |
| CGGTCTAGAAACTCGTTGAA+TGG | - | chr3_4:14253672-14253691 | None:intergenic | 45.0% | |
| ATTTGCTTAACGAACCGGAC+CGG | - | chr3_4:14253692-14253711 | None:intergenic | 45.0% | |
| ! | TTTTCTTCCGAACCAGAACG+CGG | - | chr3_4:14253885-14253904 | None:intergenic | 45.0% |
| GGTTCGGAAGAAAATGAAGC+GGG | + | chr3_4:14253891-14253910 | Msa0491500:CDS | 45.0% | |
| GTTCGGAAGAAAATGAAGCG+GGG | + | chr3_4:14253892-14253911 | Msa0491500:CDS | 45.0% | |
| TTCACACAATCACGCAATCC+TGG | - | chr3_4:14254806-14254825 | None:intergenic | 45.0% | |
| ATTGTTGCTGCAGTCTGTGA+TGG | + | chr3_4:14255241-14255260 | Msa0491500:intron | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | + | chr3_4:14255242-14255261 | Msa0491500:intron | 45.0% | |
| CTACCTCAAGTGTTCGTTAG+AGG | + | chr3_4:14255281-14255300 | Msa0491500:CDS | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | - | chr3_4:14255383-14255402 | None:intergenic | 45.0% | |
| AACAAAGCCAGGCTTCATCT+TGG | - | chr3_4:14255384-14255403 | None:intergenic | 45.0% | |
| CAACTTTCGCAAACAAAGCC+AGG | - | chr3_4:14255395-14255414 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGCGAAAGTTG+TGG | + | chr3_4:14255395-14255414 | Msa0491500:CDS | 45.0% |
| TGCTTGGAGTGCAATGAGAA+TGG | + | chr3_4:14255497-14255516 | Msa0491500:CDS | 45.0% | |
| ! | CCCTTTTTCCTCCTATTCTC+TGG | + | chr3_4:14255897-14255916 | Msa0491500:three_prime_UTR | 45.0% |
| ACACAACACCAGAGAATAGG+AGG | - | chr3_4:14255908-14255927 | None:intergenic | 45.0% | |
| !! | AATTAAAAAAAAAAAAGAAT+TGG | - | chr3_4:14254507-14254526 | None:intergenic | 5.0% |
| ! | AACGAGTTTCTAGACCGGTC+CGG | + | chr3_4:14253675-14253694 | Msa0491500:CDS | 50.0% |
| ATGAAGCGGGGATGTTGTTC+CGG | + | chr3_4:14253904-14253923 | Msa0491500:CDS | 50.0% | |
| GGATGCTGATGATCGGATTG+TGG | + | chr3_4:14253932-14253951 | Msa0491500:CDS | 50.0% | |
| AGCAGGAAAACCGGACAAAC+CGG | + | chr3_4:14254997-14255016 | Msa0491500:intron | 50.0% | |
| ACTGTATGGATCCGGACATC+CGG | - | chr3_4:14255019-14255038 | None:intergenic | 50.0% | |
| TCGCTGCAACTGTATGGATC+CGG | - | chr3_4:14255027-14255046 | None:intergenic | 50.0% | |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | + | chr3_4:14255374-14255393 | Msa0491500:CDS | 50.0% |
| CTCCCACTGCAATTCTCACA+AGG | - | chr3_4:14255437-14255456 | None:intergenic | 50.0% | |
| GTGAGAATTGCAGTGGGAGT+AGG | + | chr3_4:14255438-14255457 | Msa0491500:CDS | 50.0% | |
| ATTCCAGAACAGGCGCAACA+AGG | - | chr3_4:14255536-14255555 | None:intergenic | 50.0% | |
| GGCTGCAACCATAATCGCTT+CGG | - | chr3_4:14255680-14255699 | None:intergenic | 50.0% | |
| AAGCGATTATGGTTGCAGCC+CGG | + | chr3_4:14255680-14255699 | Msa0491500:three_prime_UTR | 50.0% | |
| GCGCAAAAACACCACTGTCA+TGG | - | chr3_4:14255715-14255734 | None:intergenic | 50.0% | |
| ACCTTCTTCCGAACCACGTG+CGG | + | chr3_4:14253839-14253858 | Msa0491500:CDS | 55.0% | |
| TTAGGTCAGAAGCCGCGTTC+TGG | + | chr3_4:14253870-14253889 | Msa0491500:CDS | 55.0% | |
| ! | TCAGAAGCCGCGTTCTGGTT+CGG | + | chr3_4:14253875-14253894 | Msa0491500:CDS | 55.0% |
| GATCATCAGCATCCGCCAAC+CGG | - | chr3_4:14253926-14253945 | None:intergenic | 55.0% | |
| ! | GGTTGGCGGATGCTGATGAT+CGG | + | chr3_4:14253925-14253944 | Msa0491500:CDS | 55.0% |
| AACCGGACAAACCGGATGTC+CGG | + | chr3_4:14255005-14255024 | Msa0491500:intron | 55.0% | |
| ! | ATCCGGACATCCGGTTTGTC+CGG | - | chr3_4:14255010-14255029 | None:intergenic | 55.0% |
| GCGAAAGTTGTGGCGATGCT+AGG | + | chr3_4:14255405-14255424 | Msa0491500:CDS | 55.0% | |
| TGTCCTTGTTGCGCCTGTTC+TGG | + | chr3_4:14255530-14255549 | Msa0491500:CDS | 55.0% | |
| CTTCGAAGCCGCACGTGGTT+CGG | - | chr3_4:14253850-14253869 | None:intergenic | 60.0% | |
| CCTAACTTCGAAGCCGCACG+TGG | - | chr3_4:14253855-14253874 | None:intergenic | 60.0% | |
| CCACGTGCGGCTTCGAAGTT+AGG | + | chr3_4:14253852-14253871 | Msa0491500:CDS | 60.0% | |
| AGCGGGGATGTTGTTCCGGT+TGG | + | chr3_4:14253908-14253927 | Msa0491500:CDS | 60.0% | |
| GGGGATGTTGTTCCGGTTGG+CGG | + | chr3_4:14253911-14253930 | Msa0491500:CDS | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | + | chr3_4:14255247-14255266 | Msa0491500:intron | 60.0% |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | - | chr3_4:14253843-14253862 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 14253278 | 14255961 | 14253278 | ID=Msa0491500;Name=Msa0491500 |
| chr3_4 | mRNA | 14253278 | 14255961 | 14253278 | ID=Msa0491500-mRNA-1;Parent=Msa0491500;Name=Msa0491500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=322|1|1|1|1|1|2|348|283 |
| chr3_4 | exon | 14253278 | 14254091 | 14253278 | ID=Msa0491500-mRNA-1:exon:4189;Parent=Msa0491500-mRNA-1 |
| chr3_4 | exon | 14255254 | 14255961 | 14255254 | ID=Msa0491500-mRNA-1:exon:4190;Parent=Msa0491500-mRNA-1 |
| chr3_4 | five_prime_UTR | 14253278 | 14253599 | 14253278 | ID=Msa0491500-mRNA-1:five_prime_utr;Parent=Msa0491500-mRNA-1 |
| chr3_4 | CDS | 14253600 | 14254091 | 14253600 | ID=Msa0491500-mRNA-1:cds;Parent=Msa0491500-mRNA-1 |
| chr3_4 | CDS | 14255254 | 14255613 | 14255254 | ID=Msa0491500-mRNA-1:cds;Parent=Msa0491500-mRNA-1 |
| chr3_4 | three_prime_UTR | 14255614 | 14255961 | 14255614 | ID=Msa0491500-mRNA-1:three_prime_utr;Parent=Msa0491500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
