AlfalfaGEDB | Msa1079620

M. sativa cultivar zhongmu-4 / Msa1079620

KEGG: K11584
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF01603.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079620	XP_013450015.2	99.359	468	3	0	1	468	1	468	0.0	964

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079620	sp\|O04376\|2A5B_ARATH	77.113	485	86	2	1	460	1	485	0.0	745

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079620	A0A396H5I5	99.359	468	3	0	1	468	1	468	0.0	964

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0120540	Msa1079620	0.810075	1.380234e-50	-8.615850e-47
Msa0177270	Msa1079620	0.803301	3.722222e-49	-8.615850e-47
Msa0227310	Msa1079620	-0.815084	1.107900e-51	-8.615850e-47
Msa0436200	Msa1079620	0.806350	8.586178e-50	-8.615850e-47
Msa1079620	Msa1172130	-0.838035	3.652014e-57	-8.615850e-47
Msa1079620	Msa1198880	0.817045	4.041520e-52	-8.615850e-47
Msa1079620	Msa1298550	-0.820880	5.428849e-53	-8.615850e-47
Msa1079620	Msa1330890	-0.821825	3.286633e-53	-8.615850e-47
Msa1079620	Msa1364060	0.807906	4.019796e-50	-8.615850e-47
Msa1079620	Msa1422910	0.810857	9.355436e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079620	MtrunA17_Chr7g0264871	99.359	468	3	0	1	468	1	468	0.0	964
Msa1079620	MtrunA17_Chr1g0180401	81.481	486	70	4	1	467	1	485	0.0	763
Msa1079620	MtrunA17_Chr1g0210311	66.946	478	139	4	1	460	1	477	0.0	661
Msa1079620	MtrunA17_Chr6g0458891	63.496	452	164	1	9	459	43	494	0.0	609
Msa1079620	MtrunA17_Chr3g0123051	65.871	419	143	0	42	460	83	501	0.0	593
Msa1079620	MtrunA17_Chr3g0119261	65.843	445	152	0	14	458	65	509	0.0	592
Msa1079620	MtrunA17_Chr1g0148671	60.909	440	168	3	23	459	39	477	0.0	550
Msa1079620	MtrunA17_Chr3g0138441	58.222	450	186	2	12	459	35	484	0.0	544
Msa1079620	MtrunA17_Chr4g0062821	53.796	461	193	5	16	459	27	484	0.0	527
Msa1079620	MtrunA17_Chr1g0211361	40.319	439	252	4	30	461	1	436	3.69e-120	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1079620	AT3G09880.1	77.113	485	86	2	1	460	1	485	745
Msa1079620	AT5G03470.1	72.990	485	106	2	1	460	1	485	731
Msa1079620	AT4G15415.1	62.222	495	150	3	1	459	1	494	620
Msa1079620	AT4G15415.4	62.222	495	150	3	1	459	1	494	620
Msa1079620	AT4G15415.2	62.222	495	150	3	1	459	1	494	620
Msa1079620	AT4G15415.5	62.222	495	150	3	1	459	1	494	620
Msa1079620	AT3G21650.1	66.370	449	139	1	11	459	79	515	618
Msa1079620	AT3G21650.2	66.370	449	139	1	11	459	79	515	618
Msa1079620	AT3G54930.2	63.083	493	148	3	1	459	1	493	613
Msa1079620	AT3G54930.1	63.083	493	148	3	1	459	1	493	613

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Find 154 sgRNAs with CRISPR-Local

Find 538 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGGCTCCTCCTCTTC+CGG	0.453499	7_2:-78854734	None:intergenic
AAAGAAGAACCATACAGCGT+TGG	0.590494	7_2:-78855336	None:intergenic
AAATTCTGTCTCTCGGAAAC+CGG	0.456022	7_2:-78854473	None:intergenic
AACCGACGGATTCGGTCCAC+CGG	0.542715	7_2:+78854367	Msa1079620:CDS
AACTTATGCTCTTCCTTCAT+CGG	0.511189	7_2:-78855088	None:intergenic
AAGAGAGGCTAAAGCCAAAG+AGG	0.616896	7_2:+78860790	Msa1079620:CDS
AAGAGCTGCGGGAATTGAAT+TGG	0.425294	7_2:+78860816	Msa1079620:CDS
AATCAAGAGACAAACGTTGA+TGG	0.404294	7_2:+78854571	Msa1079620:CDS
AATCAATAATGGCACCAAAA+TGG	0.345894	7_2:-78860973	None:intergenic
AATGGGATTGTTCATTGGAT+AGG	0.505685	7_2:+78860920	Msa1079620:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAGGTGATGATTAAAG+AGG	-	chr7_2:78854142-78854161	None:intergenic	30.0%
AGTGGTAAATTATAGAGAGA+GGG	-	chr7_2:78854192-78854211	None:intergenic	30.0%
TCAAGAAGAGATGATCAAAA+TGG	+	chr7_2:78854643-78854662	Msa1079620:CDS	30.0%
AGAGATGATCAAAATGGTTT+CGG	+	chr7_2:78854649-78854668	Msa1079620:CDS	30.0%
TCATAGACCCTTTATTAGAA+AGG	+	chr7_2:78854961-78854980	Msa1079620:CDS	30.0%
ACACAATATCCAAAGGAAAA+TGG	-	chr7_2:78855468-78855487	None:intergenic	30.0%
TTGTAAGGTAGATCTATACT+TGG	+	chr7_2:78855527-78855546	Msa1079620:intron	30.0%
GTGAGAAATGATGTTATGTT+AGG	-	chr7_2:78855834-78855853	None:intergenic	30.0%
TGTATATCGTGCCAATTAAA+TGG	+	chr7_2:78855981-78856000	Msa1079620:intron	30.0%
AGGATTGTAGTCCATTTAAT+TGG	-	chr7_2:78855995-78856014	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	78854129	78861304	78854129	ID=Msa1079620;Name=Msa1079620
chr7_2	mRNA	78854129	78861304	78854129	ID=Msa1079620-mRNA-1;Parent=Msa1079620;Name=Msa1079620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=185\|1\|1\|1\|1\|1\|2\|412\|468
chr7_2	exon	78854129	78855399	78854129	ID=Msa1079620-mRNA-1:exon:19645;Parent=Msa1079620-mRNA-1
chr7_2	exon	78860572	78861304	78860572	ID=Msa1079620-mRNA-1:exon:19646;Parent=Msa1079620-mRNA-1
chr7_2	five_prime_UTR	78854129	78854313	78854129	ID=Msa1079620-mRNA-1:five_prime_utr;Parent=Msa1079620-mRNA-1
chr7_2	CDS	78854314	78855399	78854314	ID=Msa1079620-mRNA-1:cds;Parent=Msa1079620-mRNA-1
chr7_2	CDS	78860572	78860892	78860572	ID=Msa1079620-mRNA-1:cds;Parent=Msa1079620-mRNA-1
chr7_2	three_prime_UTR	78860893	78861304	78860893	ID=Msa1079620-mRNA-1:three_prime_utr;Parent=Msa1079620-mRNA-1

Gene Sequence

>Msa1079620

ATGTTCAAGAAATTAATGAAAGGAGGGCAAAAGAAGCCCTCCAAATCCGATTCAACCGACGGATTCGGTCCACCGGCGAACACCACCGTTGATTCATCGGCGGTCGTCATACCACCACCGTCGGGAACAATCGAAGCGCTTCCATTGTTCCGCGACGTACCGGTTTCCGAGAGACAGAATTTGTTTCTCCGGAAGCTTCAGATTTGTTGCCACACTTTAGATTTCACCGATACGTTGAAATCGGTTCGAGAAAAAGAAATCAAGAGACAAACGTTGATGGAATTGGTTGAATTTATTCAATCTGGTTCGAGTAAGATAACGGAGATTTGTCAAGAAGAGATGATCAAAATGGTTTCGGTCAATATTTTCCGGTGTCTTCCACCGGCGTATCATGAGAATACTGGACAAGATGCCGCGGATCCGGAAGAGGAGGAGCCGTGTTTGGAGCCTGCGTGGCCACATTTGCAGCTTGTTTATGAGCTTCTGCTTAGATATGTGGTTTCATCTGATACTGATACGAAGGTAGCAAAACGTTACATTGATCATTCATTTGTGCTTAAATTGCTTGATTTGTTTGATTCTGAGGATCCTAGAGAGCGCGAATATGTGAAAACGATATTGCATCGTGTTTATGGAAAATTTATGGTTCATAGACCCTTTATTAGAAAGGCTATTAATAACATATTTTATCGGTTTATTTATGAGACTGAGAGACACAGTGGGATTATGGAGCTTCTTGAGATTCTTGGGAGTATAATTAATGGGTTTGCGTTGCCGATGAAGGAAGAGCATAAGTTGTTTCTTGTGCGAGCGTTGTTGCCTTTGCATAAACCTAAACCGGTTGCTGTGTACCATCAGCAGTTGTCTTACTGCATTTCACAGTTTGTTGAGAAGGATTTTAAGCTAGCGGATACTGTTATTCGGGGTTTGTTGAAGTACTGGCCGGTAACTAATTGTCAGAAGGAAGTTCTTTTTCTCGGGGAACTGGAGGAAGTGCTGGAGGCTACCCAAGCTGCGGAGTTCCAACGCTGTATGGTTCTTCTTTTTAGACAGATTGCTCGCTGCCTCAATAGTCCGCATTTTCAGGTCGCAGAACGAGCTCTCTTTTTGTGGAATAACGAGCACATCGTCAGTTTAATTGCCCAAAACAGGACTGTCGTATTGCCCATAATATTCGAAGCATTGGAGAAAAATGTCCAGAGTCATTGGAACCCAGCTGTAAATGGGTTGACTGTGAATGTTAGGAAAATGTTCCTTGAAATGGATGCTGAATTGTTTGAAGAGTGCCAGAGGCAATATTTGGAAAGAGAGGCTAAAGCCAAAGAGGTGGAAGAGCTGCGGGAATTGAATTGGAAGAGACTGGCAGATGCGGCTGCACAGAATGGGCCGGATATGATCACAGCTTAG

Protein sequence

>Msa1079620

MFKKLMKGGQKKPSKSDSTDGFGPPANTTVDSSAVVIPPPSGTIEALPLFRDVPVSERQNLFLRKLQICCHTLDFTDTLKSVREKEIKRQTLMELVEFIQSGSSKITEICQEEMIKMVSVNIFRCLPPAYHENTGQDAADPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYVKTILHRVYGKFMVHRPFIRKAINNIFYRFIYETERHSGIMELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAVYHQQLSYCISQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVLLFRQIARCLNSPHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNVQSHWNPAVNGLTVNVRKMFLEMDAELFEECQRQYLEREAKAKEVEELRELNWKRLADAAAQNGPDMITA*