AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079770 MtrunA17_Chr7g0265101 92.505 507 36 2 1 507 1 505 0.0 966
Msa1079770 MtrunA17_Chr7g0265051 82.249 507 86 3 1 507 1 503 0.0 869
Msa1079770 MtrunA17_Chr4g0011051 80.244 491 94 2 1 490 1 489 0.0 822
Msa1079770 MtrunA17_Chr7g0265151 61.368 497 181 7 1 494 1 489 0.0 603
Msa1079770 MtrunA17_Chr7g0265041 57.520 492 197 7 9 495 11 495 0.0 561
Msa1079770 MtrunA17_Chr7g0275681 57.851 484 191 7 9 491 12 483 0.0 552
Msa1079770 MtrunA17_Chr5g0419761 50.710 493 234 6 1 490 1 487 4.86e-173 496
Msa1079770 MtrunA17_Chr1g0179901 47.465 493 247 6 3 490 10 495 1.21e-164 475
Msa1079770 MtrunA17_Chr5g0419771 46.612 487 249 5 8 490 35 514 2.65e-159 462
Msa1079770 MtrunA17_Chr7g0265111 50.710 493 226 9 8 493 38 520 7.68e-156 454
Msa1079770 MtrunA17_Chr7g0265141 48.065 491 244 7 1 487 1 484 9.75e-152 442
Msa1079770 MtrunA17_Chr8g0366391 39.554 493 277 10 1 488 1 477 5.70e-115 348
Msa1079770 MtrunA17_Chr4g0044501 40.000 485 269 10 8 488 9 475 3.43e-114 346
Msa1079770 MtrunA17_Chr4g0044511 38.105 496 284 11 1 492 32 508 1.20e-111 340
Msa1079770 MtrunA17_Chr7g0243931 39.078 499 280 10 7 495 15 499 7.17e-109 333
Msa1079770 MtrunA17_Chr5g0416741 38.382 482 286 7 8 488 12 483 1.62e-107 329
Msa1079770 MtrunA17_Chr5g0401851 37.938 485 291 7 6 488 7 483 3.15e-106 325
Msa1079770 MtrunA17_Chr4g0066151 37.952 498 265 13 4 488 13 479 9.38e-105 322
Msa1079770 MtrunA17_Chr7g0243631 37.751 498 288 9 7 495 11 495 1.77e-104 322
Msa1079770 MtrunA17_Chr7g0243681 36.273 499 289 11 7 495 9 488 8.03e-104 320
Msa1079770 MtrunA17_Chr6g0463891 38.742 493 271 11 8 488 11 484 9.93e-104 319
Msa1079770 MtrunA17_Chr4g0066221 36.821 497 286 11 2 490 6 482 3.40e-103 318
Msa1079770 MtrunA17_Chr7g0243951 37.475 499 287 11 7 495 9 492 5.94e-103 317
Msa1079770 MtrunA17_Chr7g0243861 38.163 490 281 9 7 488 12 487 6.66e-102 315
Msa1079770 MtrunA17_Chr4g0066261 37.475 491 278 12 7 488 11 481 7.09e-102 314
Msa1079770 MtrunA17_Chr7g0243871 36.832 505 269 12 1 488 1 472 8.80e-102 314
Msa1079770 MtrunA17_Chr8g0355221 37.647 510 294 11 2 507 8 497 2.86e-101 313
Msa1079770 MtrunA17_Chr4g0066131 36.056 502 280 14 4 494 8 479 8.01e-100 309
Msa1079770 MtrunA17_Chr4g0044521 37.526 485 269 14 7 486 9 464 1.82e-98 305
Msa1079770 MtrunA17_Chr4g0060511 35.050 505 295 12 7 495 9 496 3.68e-98 305
Msa1079770 MtrunA17_Chr7g0243781 36.253 491 294 8 1 488 1 475 1.19e-97 303
Msa1079770 MtrunA17_Chr7g0235051 36.701 485 262 11 7 487 9 452 2.13e-97 302
Msa1079770 MtrunA17_Chr7g0243771 37.576 495 277 12 5 488 2 475 2.55e-97 303
Msa1079770 MtrunA17_Chr4g0066171 34.809 497 284 13 2 490 14 478 8.93e-96 298
Msa1079770 MtrunA17_Chr4g0066281 36.511 493 270 13 7 491 12 469 1.31e-95 298
Msa1079770 MtrunA17_Chr4g0014061 34.969 489 294 10 1 485 1 469 2.52e-95 297
Msa1079770 MtrunA17_Chr7g0243801 37.675 499 277 13 1 488 1 476 1.48e-94 295
Msa1079770 MtrunA17_Chr1g0165701 36.660 491 292 11 2 488 8 483 1.13e-93 293
Msa1079770 MtrunA17_Chr6g0463861 34.538 498 289 13 2 490 6 475 1.33e-93 293
Msa1079770 MtrunA17_Chr2g0294931 36.382 503 290 13 2 495 6 487 2.20e-93 293
Msa1079770 MtrunA17_Chr4g0044481 40.376 426 212 8 1 424 19 404 9.80e-93 289
Msa1079770 MtrunA17_Chr7g0218311 37.000 500 286 13 2 494 11 488 1.32e-91 288
Msa1079770 MtrunA17_Chr5g0416821 36.948 498 270 13 3 488 8 473 1.11e-90 285
Msa1079770 MtrunA17_Chr8g0374971 33.605 491 295 12 8 488 11 480 1.39e-89 283
Msa1079770 MtrunA17_Chr4g0066201 34.545 495 285 13 2 488 11 474 1.41e-89 282
Msa1079770 MtrunA17_Chr7g0243761 35.842 505 271 12 3 498 6 466 1.67e-89 281
Msa1079770 MtrunA17_Chr6g0463851 35.200 500 288 13 2 488 6 482 5.25e-89 281
Msa1079770 MtrunA17_Chr8g0374931 35.317 504 294 14 2 495 6 487 1.87e-88 280
Msa1079770 MtrunA17_Chr2g0294921 35.887 496 289 13 2 488 155 630 2.38e-88 284
Msa1079770 MtrunA17_Chr5g0428081 35.029 511 275 13 2 490 6 481 1.68e-87 277
Msa1079770 MtrunA17_Chr5g0410941 34.677 496 291 12 2 488 18 489 3.36e-87 276
Msa1079770 MtrunA17_Chr8g0374901 33.535 495 292 13 7 490 12 480 1.57e-86 275
Msa1079770 MtrunA17_Chr7g0243851 34.861 502 255 14 7 495 9 451 5.39e-85 270
Msa1079770 MtrunA17_Chr8g0374941 34.073 496 297 14 7 494 949 1422 8.72e-82 277
Msa1079770 MtrunA17_Chr8g0374941 34.100 478 282 14 7 474 11 465 9.39e-79 268
Msa1079770 MtrunA17_Chr8g0374941 33.475 472 285 13 7 470 476 926 1.21e-72 251
Msa1079770 MtrunA17_Chr8g0350881 32.929 495 304 12 8 494 11 485 3.39e-79 256
Msa1079770 MtrunA17_Chr7g0243811 36.145 415 242 7 21 433 1 394 4.33e-75 242
Msa1079770 MtrunA17_Chr2g0294941 36.667 360 208 6 122 473 17 364 9.59e-70 228
Msa1079770 MtrunA17_Chr5g0420801 30.612 490 300 11 7 490 5 460 1.69e-68 227
Msa1079770 MtrunA17_Chr8g0369341 31.325 498 296 14 7 490 5 470 1.73e-68 227
Msa1079770 MtrunA17_Chr2g0307961 32.252 493 294 14 5 489 9 469 2.53e-65 219
Msa1079770 MtrunA17_Chr5g0440421 30.273 512 313 16 3 490 4 495 1.53e-63 214
Msa1079770 MtrunA17_Chr2g0329111 30.165 484 294 15 7 474 4 459 2.18e-57 198
Msa1079770 MtrunA17_Chr8g0361411 30.118 508 291 16 2 494 1 459 1.03e-56 196
Msa1079770 MtrunA17_Chr7g0243611 37.267 322 166 10 127 439 1 295 4.08e-56 189
Msa1079770 MtrunA17_Chr7g0231631 39.338 272 144 5 218 488 8 259 1.15e-54 184
Msa1079770 MtrunA17_Chr7g0243711 40.000 255 140 8 247 495 78 325 2.92e-54 185
Msa1079770 MtrunA17_Chr4g0050341 31.151 504 285 17 9 485 19 487 8.54e-54 189
Msa1079770 MtrunA17_Chr8g0373301 31.601 481 256 17 36 477 9 455 1.28e-53 187
Msa1079770 MtrunA17_Chr8g0336331 30.118 508 296 15 7 491 8 479 1.01e-52 185
Msa1079770 MtrunA17_Chr5g0431361 29.485 485 294 15 9 488 12 453 2.08e-52 184
Msa1079770 MtrunA17_Chr3g0078841 29.389 507 302 15 7 491 8 480 6.29e-52 183
Msa1079770 MtrunA17_Chr5g0431371 29.752 484 291 13 9 488 10 448 2.49e-51 181
Msa1079770 MtrunA17_Chr5g0431421 29.328 491 300 13 3 490 4 450 8.15e-51 179
Msa1079770 MtrunA17_Chr5g0431401 28.600 500 288 14 3 488 4 448 9.42e-51 179
Msa1079770 MtrunA17_Chr8g0377921 30.040 496 293 16 11 489 6 464 1.26e-50 179
Msa1079770 MtrunA17_Chr7g0275511 28.773 497 295 16 6 482 12 469 1.82e-50 179
Msa1079770 MtrunA17_Chr5g0448521 28.144 501 307 14 7 489 3 468 2.48e-50 179
Msa1079770 MtrunA17_Chr6g0464861 29.234 496 286 19 9 490 11 455 4.19e-50 177
Msa1079770 MtrunA17_Chr6g0464841 29.899 495 285 22 9 490 11 456 4.84e-50 177
Msa1079770 MtrunA17_Chr8g0339461 39.649 285 131 9 217 484 207 467 8.36e-50 177
Msa1079770 MtrunA17_Chr2g0278711 30.739 501 297 19 7 489 9 477 8.50e-50 177
Msa1079770 MtrunA17_Chr8g0336691 28.831 496 292 17 8 482 918 1373 1.24e-49 183
Msa1079770 MtrunA17_Chr8g0336691 28.743 501 282 19 5 477 9 462 3.98e-48 179
Msa1079770 MtrunA17_Chr8g0336691 29.184 490 260 19 8 477 479 901 2.57e-44 167
Msa1079770 MtrunA17_Chr8g0339451 32.982 379 209 11 118 477 100 452 1.25e-49 177
Msa1079770 MtrunA17_Chr8g0347281 30.612 490 269 20 11 477 20 461 1.36e-49 177
Msa1079770 MtrunA17_Chr8g0339601 39.711 277 126 8 217 476 66 318 1.44e-49 173
Msa1079770 MtrunA17_Chr5g0431441 27.655 499 301 13 9 493 18 470 2.51e-49 176
Msa1079770 MtrunA17_Chr6g0454341 28.854 506 306 17 7 491 8 480 3.08e-49 176
Msa1079770 MtrunA17_Chr6g0462531 28.398 493 284 16 10 477 5 453 3.26e-49 176
Msa1079770 MtrunA17_Chr7g0217881 28.685 502 300 15 5 491 6 464 3.65e-49 175
Msa1079770 MtrunA17_Chr8g0339631 31.620 389 212 12 118 484 108 464 5.38e-49 175
Msa1079770 MtrunA17_Chr7g0243911 40.284 211 121 3 264 472 7 214 5.76e-49 168
Msa1079770 MtrunA17_Chr8g0335161 29.577 497 289 14 7 482 4 460 5.95e-49 175
Msa1079770 MtrunA17_Chr1g0173121 27.944 501 288 16 11 490 16 464 9.27e-49 174
Msa1079770 MtrunA17_Chr8g0336651 28.655 513 297 16 8 496 780 1247 1.17e-48 180
Msa1079770 MtrunA17_Chr8g0336651 33.904 292 144 9 190 477 517 763 2.04e-38 150
Msa1079770 MtrunA17_Chr8g0336651 26.210 496 293 14 8 477 5 453 3.94e-38 149
Msa1079770 MtrunA17_Chr5g0442541 28.346 508 299 19 7 491 3 468 1.35e-48 174
Msa1079770 MtrunA17_Chr7g0232391 29.376 497 277 22 8 477 5 454 2.18e-48 173
Msa1079770 MtrunA17_Chr6g0464881 30.339 501 281 21 9 493 11 459 2.72e-48 173
Msa1079770 MtrunA17_Chr6g0453951 27.799 518 306 16 3 491 51 529 4.88e-48 174
Msa1079770 MtrunA17_Chr8g0347271 30.595 487 273 21 11 477 21 462 5.29e-48 172
Msa1079770 MtrunA17_Chr6g0454151 29.287 519 295 20 4 492 5 481 7.23e-48 172
Msa1079770 MtrunA17_Chr6g0464871 29.209 493 291 21 9 490 23 468 7.36e-48 172
Msa1079770 MtrunA17_Chr6g0454301 29.167 504 307 16 7 491 261 733 7.86e-48 176
Msa1079770 MtrunA17_Chr6g0454301 34.524 252 133 7 244 489 5 230 9.64e-32 129
Msa1079770 MtrunA17_Chr6g0462571 28.195 493 282 15 10 477 5 450 1.30e-47 171
Msa1079770 MtrunA17_Chr8g0335141 29.545 484 285 15 12 477 12 457 1.56e-47 171
Msa1079770 MtrunA17_Chr1g0207971 27.273 506 306 17 2 493 1 458 1.88e-47 171
Msa1079770 MtrunA17_Chr6g0459311 29.697 495 279 18 7 477 11 460 3.44e-47 170
Msa1079770 MtrunA17_Chr6g0454401 28.627 517 296 17 7 491 8 483 7.94e-47 169
Msa1079770 MtrunA17_Chr6g0454321 29.697 495 282 17 7 474 8 463 8.03e-47 172
Msa1079770 MtrunA17_Chr5g0442561 27.519 516 300 20 7 491 3 475 9.42e-47 169
Msa1079770 MtrunA17_Chr6g0454181 27.344 512 308 14 7 491 8 482 1.18e-46 169
Msa1079770 MtrunA17_Chr6g0454261 28.346 508 314 16 4 491 5 482 1.32e-46 169
Msa1079770 MtrunA17_Chr1g0159551 27.495 491 294 14 14 490 19 461 3.37e-46 167
Msa1079770 MtrunA17_Chr8g0357361 43.137 204 105 5 217 419 61 254 3.40e-46 162
Msa1079770 MtrunA17_Chr6g0454141 28.460 513 301 16 7 491 8 482 3.77e-46 167
Msa1079770 MtrunA17_Chr6g0454331 29.087 526 289 20 4 491 2 481 5.04e-46 167
Msa1079770 MtrunA17_Chr5g0442491 27.767 515 302 17 7 491 3 477 8.17e-46 167
Msa1079770 MtrunA17_Chr7g0232401 28.543 494 287 17 8 477 5 456 8.58e-46 166
Msa1079770 MtrunA17_Chr6g0449931 28.400 500 292 17 7 482 4 461 9.18e-46 166
Msa1079770 MtrunA17_Chr8g0361371 27.944 501 291 15 4 477 2 459 1.17e-45 166
Msa1079770 MtrunA17_Chr7g0232411 28.175 504 284 20 8 482 5 459 1.38e-45 166
Msa1079770 MtrunA17_Chr6g0454191 27.413 518 309 15 3 491 4 483 1.74e-45 166
Msa1079770 MtrunA17_Chr5g0426431 29.045 513 290 18 9 491 12 480 2.48e-45 165
Msa1079770 MtrunA17_Chr6g0454361 29.586 507 303 19 7 491 9 483 2.94e-45 165
Msa1079770 MtrunA17_Chr8g0382021 27.495 491 303 16 14 490 39 490 3.28e-45 165
Msa1079770 MtrunA17_Chr8g0334861 29.719 498 274 18 7 477 4 452 3.50e-45 165
Msa1079770 MtrunA17_Chr6g0486251 28.247 485 289 14 12 477 9 453 3.58e-45 164
Msa1079770 MtrunA17_Chr6g0486201 28.247 485 289 14 12 477 9 453 3.58e-45 164
Msa1079770 MtrunA17_Chr4g0053501 28.094 509 300 18 8 496 10 472 4.09e-45 165
Msa1079770 MtrunA17_Chr5g0442601 28.487 509 308 18 7 491 402 878 4.10e-45 169
Msa1079770 MtrunA17_Chr5g0442601 35.468 203 105 6 226 414 143 333 1.65e-24 107
Msa1079770 MtrunA17_Chr3g0112761 29.167 504 275 17 9 490 8 451 4.33e-45 164
Msa1079770 MtrunA17_Chr8g0377941 30.311 386 229 11 117 492 110 465 5.04e-45 164
Msa1079770 MtrunA17_Chr6g0462551 27.733 494 286 18 10 477 5 453 6.15e-45 164
Msa1079770 MtrunA17_Chr6g0462521 28.542 480 286 14 10 477 5 439 6.18e-45 164
Msa1079770 MtrunA17_Chr5g0429711 27.655 499 292 19 10 488 12 461 1.04e-44 163
Msa1079770 MtrunA17_Chr8g0359821 27.866 506 311 16 7 491 8 480 1.18e-44 164
Msa1079770 MtrunA17_Chr5g0414321 27.593 511 291 19 3 493 5 456 1.63e-44 163
Msa1079770 MtrunA17_Chr6g0454291 28.215 521 298 18 4 491 2 479 1.77e-44 163
Msa1079770 MtrunA17_Chr6g0464921 29.124 491 291 16 9 488 11 455 2.52e-44 162
Msa1079770 MtrunA17_Chr6g0454201 30.711 394 220 11 119 491 122 483 2.59e-44 162
Msa1079770 MtrunA17_Chr3g0118691 27.291 502 325 13 2 490 10 484 2.72e-44 162
Msa1079770 MtrunA17_Chr7g0232341 28.340 494 285 19 9 477 6 455 4.58e-44 162
Msa1079770 MtrunA17_Chr2g0302991 28.317 505 298 22 7 490 3 464 4.62e-44 161
Msa1079770 MtrunA17_Chr3g0098111 28.094 509 311 16 1 491 1 472 5.89e-44 161
Msa1079770 MtrunA17_Chr5g0442521 26.654 514 310 16 7 491 3 478 6.09e-44 161
Msa1079770 MtrunA17_Chr5g0414331 27.778 486 296 15 8 485 12 450 6.82e-44 161
Msa1079770 MtrunA17_Chr8g0370941 25.370 540 316 16 9 505 8 503 7.08e-44 162
Msa1079770 MtrunA17_Chr5g0442511 27.647 510 288 18 2 488 42 493 7.12e-44 162
Msa1079770 MtrunA17_Chr3g0118671 27.984 511 306 18 5 490 2 475 8.41e-44 161
Msa1079770 MtrunA17_Chr3g0092641 27.510 498 313 15 9 489 12 478 1.13e-43 160
Msa1079770 MtrunA17_Chr7g0250001 28.317 505 282 22 7 490 4 449 1.96e-43 160
Msa1079770 MtrunA17_Chr5g0429681 26.531 490 298 18 7 477 42 488 2.16e-43 160
Msa1079770 MtrunA17_Chr1g0207951 28.600 507 291 17 1 488 116 570 2.65e-43 164
Msa1079770 MtrunA17_Chr1g0207951 25.933 509 314 18 1 491 648 1111 3.48e-39 152
Msa1079770 MtrunA17_Chr3g0079731 34.932 292 145 9 217 486 210 478 2.91e-43 160
Msa1079770 MtrunA17_Chr4g0066141 45.614 171 79 5 325 488 188 351 4.27e-43 156
Msa1079770 MtrunA17_Chr4g0066141 29.381 194 112 5 39 229 9 180 3.36e-17 83.2
Msa1079770 MtrunA17_Chr1g0161351 28.600 507 306 18 1 488 28 497 4.98e-43 159
Msa1079770 MtrunA17_Chr3g0118701 26.916 509 322 16 2 492 10 486 5.16e-43 159
Msa1079770 MtrunA17_Chr3g0122001 26.824 507 304 16 9 488 486 952 5.23e-43 163
Msa1079770 MtrunA17_Chr3g0122001 29.351 385 241 11 119 488 105 473 7.89e-43 163
Msa1079770 MtrunA17_Chr3g0118771 28.205 507 312 16 3 490 17 490 6.05e-43 159
Msa1079770 MtrunA17_Chr6g0454121 29.668 391 236 11 115 491 116 481 6.62e-43 159
Msa1079770 MtrunA17_Chr1g0207831 27.255 510 310 19 1 492 1 467 7.43e-43 158
Msa1079770 MtrunA17_Chr2g0302961 26.800 500 315 19 7 490 3 467 7.92e-43 158
Msa1079770 MtrunA17_Chr7g0232331 27.846 492 290 18 9 477 6 455 9.65e-43 158
Msa1079770 MtrunA17_Chr1g0153451 26.613 496 300 19 8 482 5 457 1.22e-42 157
Msa1079770 MtrunA17_Chr3g0118711 27.432 514 305 17 7 492 11 484 1.32e-42 158
Msa1079770 MtrunA17_Chr3g0106231 27.416 507 286 16 4 490 9 453 2.01e-42 157
Msa1079770 MtrunA17_Chr8g0336741 27.327 505 312 16 7 496 11 475 2.39e-42 157
Msa1079770 MtrunA17_Chr5g0442581 27.660 517 310 18 7 495 3 483 2.69e-42 158
Msa1079770 MtrunA17_Chr6g0454351 27.466 517 296 17 1 491 4 467 5.72e-42 156
Msa1079770 MtrunA17_Chr6g0454131 27.255 510 310 17 7 491 8 481 5.99e-42 156
Msa1079770 MtrunA17_Chr1g0207861 28.343 501 304 17 9 491 8 471 6.69e-42 156
Msa1079770 MtrunA17_Chr6g0453961 26.916 509 317 16 6 491 16 492 7.35e-42 156
Msa1079770 MtrunA17_Chr3g0112771 27.310 487 298 16 11 489 14 452 8.14e-42 155
Msa1079770 MtrunA17_Chr6g0462541 25.948 501 285 15 10 477 5 452 1.26e-41 155
Msa1079770 MtrunA17_Chr3g0121991 27.976 504 302 18 9 488 79 545 1.53e-41 156
Msa1079770 MtrunA17_Chr8g0339441 43.192 213 95 5 279 477 218 418 2.47e-41 153
Msa1079770 MtrunA17_Chr6g0452771 28.902 519 291 21 7 491 8 482 2.78e-41 154
Msa1079770 MtrunA17_Chr8g0336731 28.195 493 297 17 11 485 34 487 5.98e-41 154
Msa1079770 MtrunA17_Chr7g0249931 26.733 505 290 17 8 490 39 485 8.30e-41 153
Msa1079770 MtrunA17_Chr5g0412131 28.740 508 292 18 9 492 12 473 9.15e-41 152
Msa1079770 MtrunA17_Chr4g0053321 27.435 503 317 18 1 492 18 483 9.41e-41 153
Msa1079770 MtrunA17_Chr8g0334831 27.237 514 281 18 7 477 4 467 1.92e-40 152
Msa1079770 MtrunA17_Chr5g0412101 28.571 497 308 17 9 492 12 474 3.09e-40 151
Msa1079770 MtrunA17_Chr8g0365811 27.129 505 313 16 7 493 495 962 3.48e-40 155
Msa1079770 MtrunA17_Chr8g0365811 27.442 430 268 13 8 417 8 413 9.07e-34 136
Msa1079770 MtrunA17_Chr8g0380531 28.600 493 296 18 8 488 9 457 4.58e-40 150
Msa1079770 MtrunA17_Chr8g0334851 36.655 281 138 10 219 484 210 465 9.51e-40 150
Msa1079770 MtrunA17_Chr1g0207981 27.680 513 317 17 1 494 1 478 1.05e-39 150
Msa1079770 MtrunA17_Chr6g0454211 28.023 521 299 17 4 491 292 769 2.64e-39 152
Msa1079770 MtrunA17_Chr6g0454211 30.526 190 89 7 205 391 87 236 9.53e-19 89.7
Msa1079770 MtrunA17_Chr6g0454221 39.713 209 108 4 279 487 39 229 3.98e-39 144
Msa1079770 MtrunA17_Chr5g0423981 26.613 496 299 17 6 491 7 447 5.08e-39 147
Msa1079770 MtrunA17_Chr8g0367221 29.551 423 237 17 4 402 7 392 6.30e-39 152
Msa1079770 MtrunA17_Chr8g0367221 27.158 475 303 13 2 466 1281 1722 9.03e-36 142
Msa1079770 MtrunA17_Chr8g0367221 29.356 419 244 15 4 402 793 1179 2.60e-35 141
Msa1079770 MtrunA17_Chr7g0218791 26.775 493 284 19 9 481 5 440 9.35e-39 146
Msa1079770 MtrunA17_Chr5g0403641 28.405 514 276 18 1 487 53 501 9.58e-39 148
Msa1079770 MtrunA17_Chr5g0409591 27.752 436 239 12 105 491 76 484 2.12e-38 146
Msa1079770 MtrunA17_Chr7g0218841 27.755 490 283 18 9 485 6 437 4.58e-38 144
Msa1079770 MtrunA17_Chr7g0241781 28.172 465 267 21 7 467 7 408 6.67e-38 144
Msa1079770 MtrunA17_Chr7g0232311 33.824 272 141 8 219 477 207 452 1.00e-37 144
Msa1079770 MtrunA17_Chr5g0432731 31.985 272 159 6 220 490 52 298 1.77e-37 139
Msa1079770 MtrunA17_Chr7g0218831 27.812 489 283 17 9 485 6 436 2.20e-37 142
Msa1079770 MtrunA17_Chr7g0241801 27.837 467 269 20 5 466 4 407 8.79e-37 140
Msa1079770 MtrunA17_Chr5g0412111 26.613 496 317 15 9 492 5 465 1.04e-36 141
Msa1079770 MtrunA17_Chr7g0249981 27.016 496 298 20 7 489 23 467 2.41e-36 140
Msa1079770 MtrunA17_Chr1g0153461 37.118 229 117 7 279 496 4 216 3.16e-36 134
Msa1079770 MtrunA17_Chr6g0466831 27.312 465 295 15 8 467 17 443 3.20e-36 140
Msa1079770 MtrunA17_Chr4g0072761 32.836 268 145 7 219 486 218 450 3.92e-36 139
Msa1079770 MtrunA17_Chr6g0454271 35.341 249 133 7 247 491 65 289 8.69e-36 135
Msa1079770 MtrunA17_Chr1g0207931 26.411 496 274 16 1 488 85 497 1.06e-35 139
Msa1079770 MtrunA17_Chr5g0401721 28.306 484 308 18 17 489 16 471 1.14e-35 139
Msa1079770 MtrunA17_Chr3g0118751 25.889 506 294 16 5 490 2 446 1.37e-35 138
Msa1079770 MtrunA17_Chr4g0032331 27.122 483 283 19 10 476 9 438 1.14e-34 135
Msa1079770 MtrunA17_Chr2g0278721 28.747 487 270 18 8 465 516 954 1.15e-34 139
Msa1079770 MtrunA17_Chr2g0278721 28.085 470 288 16 8 466 14 444 1.05e-32 132
Msa1079770 MtrunA17_Chr6g0466841 26.452 465 299 15 8 467 17 443 1.60e-34 135
Msa1079770 MtrunA17_Chr4g0040691 27.238 525 283 22 1 491 1 460 3.54e-34 134
Msa1079770 MtrunA17_Chr6g0454371 39.267 191 98 4 301 491 1 173 5.37e-34 126
Msa1079770 MtrunA17_Chr4g0072771 27.328 494 292 18 7 486 23 463 1.48e-33 132
Msa1079770 MtrunA17_Chr6g0464091 27.579 475 298 15 2 466 11 449 4.12e-33 131
Msa1079770 MtrunA17_Chr3g0106251 30.515 272 160 7 220 490 52 295 5.01e-33 128
Msa1079770 MtrunA17_Chr3g0118721 30.882 272 168 7 220 490 39 291 6.21e-33 127
Msa1079770 MtrunA17_Chr6g0454171 34.862 218 98 6 279 491 134 312 7.37e-33 127
Msa1079770 MtrunA17_Chr5g0426401 32.601 273 161 8 219 489 60 311 8.92e-33 127
Msa1079770 MtrunA17_Chr7g0232351 28.010 407 237 16 8 391 5 378 1.51e-32 128
Msa1079770 MtrunA17_Chr4g0069611 27.957 465 290 18 8 466 14 439 2.08e-32 129
Msa1079770 MtrunA17_Chr8g0336251 26.148 501 317 13 8 492 6 469 3.32e-32 129
Msa1079770 MtrunA17_Chr8g0336321 26.148 501 317 13 8 492 6 469 3.73e-32 128
Msa1079770 MtrunA17_Chr3g0118661 26.139 505 324 15 1 487 5 478 4.59e-32 128
Msa1079770 MtrunA17_Chr5g0393591 23.904 502 295 16 9 497 17 444 5.24e-32 128
Msa1079770 MtrunA17_Chr2g0278741 29.895 475 273 22 8 466 96 526 6.40e-32 129
Msa1079770 MtrunA17_Chr4g0040711 26.326 528 282 20 1 490 1 459 6.85e-32 127
Msa1079770 MtrunA17_Chr5g0448551 26.236 526 292 22 1 499 1 457 8.68e-32 127
Msa1079770 MtrunA17_Chr7g0218811 25.257 487 284 17 9 477 15 439 2.37e-31 125
Msa1079770 MtrunA17_Chr4g0042891 26.848 514 311 21 5 498 3 471 2.85e-31 126
Msa1079770 MtrunA17_Chr7g0218821 36.500 200 106 5 279 477 261 440 3.78e-31 125
Msa1079770 MtrunA17_Chr6g0454251 29.257 417 242 17 4 391 2 394 6.88e-31 123
Msa1079770 MtrunA17_Chr3g0079711 35.052 194 104 4 305 486 3 186 3.65e-30 116
Msa1079770 MtrunA17_Chr8g0355011 27.907 387 198 12 119 491 45 364 2.05e-29 119
Msa1079770 MtrunA17_Chr4g0042931 25.391 512 319 21 5 498 3 469 4.91e-29 119
Msa1079770 MtrunA17_Chr2g0302851 28.059 474 278 22 8 466 15 440 3.22e-28 117
Msa1079770 MtrunA17_Chr1g0196851 25.996 477 290 14 1 462 41 469 1.03e-27 116
Msa1079770 MtrunA17_Chr8g0336261 41.667 156 72 4 301 456 1 137 1.12e-27 107
Msa1079770 MtrunA17_Chr2g0283041 24.266 511 309 16 8 498 6 458 1.42e-27 115
Msa1079770 MtrunA17_Chr7g0249961 30.986 213 124 5 279 489 69 260 4.39e-26 107
Msa1079770 MtrunA17_Chr6g0482061 25.151 497 303 19 9 476 11 467 4.45e-26 111
Msa1079770 MtrunA17_Chr8g0337381 39.041 146 73 3 351 493 1 133 6.02e-26 102
Msa1079770 MtrunA17_Chr7g0243921 34.615 182 110 3 7 188 38 210 5.17e-25 103
Msa1079770 MtrunA17_Chr3g0092031 34.921 189 102 7 281 466 6 176 9.94e-25 101
Msa1079770 MtrunA17_Chr4g0029151 24.468 470 291 16 7 462 18 437 2.53e-24 105
Msa1079770 MtrunA17_Chr5g0427571 30.597 268 168 6 227 492 52 303 6.37e-24 102
Msa1079770 MtrunA17_Chr4g0029131 24.353 464 299 17 7 462 10 429 1.31e-23 104
Msa1079770 MtrunA17_Chr7g0243731 54.930 71 32 0 349 419 6 76 2.28e-23 94.0
Msa1079770 MtrunA17_Chr6g0454231 27.839 273 137 7 219 490 7 220 2.70e-23 102
Msa1079770 MtrunA17_Chr5g0431431 30.263 228 111 5 220 441 156 341 5.45e-22 97.4
Msa1079770 MtrunA17_Chr7g0272701 36.301 146 85 3 85 226 11 152 7.63e-22 92.0
Msa1079770 MtrunA17_Chr4g0039881 31.356 236 132 8 270 501 234 443 1.25e-21 97.4
Msa1079770 MtrunA17_Chr2g0319801 25.926 459 282 16 8 452 7 421 6.74e-21 95.5
Msa1079770 MtrunA17_Chr2g0319761 25.957 470 301 17 6 466 5 436 1.58e-20 94.4
Msa1079770 MtrunA17_Chr2g0319751 25.546 458 289 17 6 452 482 898 2.14e-20 95.1
Msa1079770 MtrunA17_Chr2g0319751 24.396 455 270 18 8 452 7 397 1.89e-17 85.9
Msa1079770 MtrunA17_Chr1g0207881 36.111 144 78 5 350 491 256 387 2.22e-20 93.2
Msa1079770 MtrunA17_Chr2g0319791 24.891 458 292 15 6 452 5 421 1.06e-19 91.7
Msa1079770 MtrunA17_Chr7g0231651 33.679 193 109 6 8 192 13 194 9.45e-18 82.0
Msa1079770 MtrunA17_Chr2g0319731 24.670 454 294 15 8 452 24 438 2.29e-17 84.7
Msa1079770 MtrunA17_Chr7g0243721 41.667 120 58 5 210 324 23 135 3.57e-16 75.5
Msa1079770 MtrunA17_Chr2g0321331 33.918 171 86 5 282 452 87 230 7.37e-16 77.8
Msa1079770 MtrunA17_Chr5g0442501 22.699 326 222 7 7 326 3 304 2.06e-13 71.2
Msa1079770 MtrunA17_Chr6g0454391 40.230 87 32 3 368 451 13 82 4.92e-13 65.9
Msa1079770 MtrunA17_Chr7g0265071 54.098 61 27 1 432 491 1 61 1.50e-12 62.8
Msa1079770 MtrunA17_Chr4g0066231 35.897 78 49 1 390 467 1 77 4.82e-12 61.6
Msa1079770 MtrunA17_Chr6g0453981 30.147 136 86 4 219 352 101 229 4.54e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079770 AT2G36750.1 54.227 485 216 3 6 490 7 485 0.0 548
Msa1079770 AT2G36800.1 55.040 496 210 6 1 490 1 489 0.0 541
Msa1079770 AT2G36760.1 52.881 486 224 2 6 491 11 491 0.0 538
Msa1079770 AT2G36780.1 53.388 487 218 4 6 490 11 490 0.0 535
Msa1079770 AT2G36770.1 53.061 490 221 4 6 493 11 493 0.0 527
Msa1079770 AT2G36790.1 54.639 485 211 4 8 490 12 489 0.0 523
Msa1079770 AT3G53160.1 51.313 495 233 5 1 494 1 488 0.0 517
Msa1079770 AT3G53150.1 49.304 503 239 6 1 491 14 512 1.25e-169 489
Msa1079770 AT2G15490.3 40.644 497 256 12 7 488 5 477 1.12e-119 360
Msa1079770 AT2G15480.2 39.479 499 269 10 7 488 8 490 1.96e-119 360
Msa1079770 AT2G15480.1 39.796 490 270 10 7 488 8 480 6.24e-119 358
Msa1079770 AT2G15490.1 40.800 500 254 14 7 488 5 480 4.18e-118 356
Msa1079770 AT4G34131.1 41.046 497 265 13 2 488 1 479 7.28e-118 355
Msa1079770 AT4G34138.1 42.443 483 242 15 7 477 9 467 2.96e-113 344
Msa1079770 AT4G34135.1 39.431 492 269 12 7 488 9 481 3.07e-102 315
Msa1079770 AT5G14860.1 33.661 508 269 17 9 488 8 475 1.54e-75 246
Msa1079770 AT2G16890.2 33.466 502 280 20 9 494 9 472 3.31e-75 245
Msa1079770 AT1G73880.1 31.365 491 296 12 7 490 12 468 1.26e-72 238
Msa1079770 AT2G16890.3 33.967 421 238 15 9 416 9 402 4.07e-68 225
Msa1079770 AT1G10400.1 31.515 495 287 18 7 487 5 461 7.67e-68 226
Msa1079770 AT5G12890.1 29.344 518 305 17 1 491 1 484 3.63e-60 206
Msa1079770 AT5G03490.1 31.352 488 281 15 9 487 19 461 4.34e-60 205
Msa1079770 AT4G34135.2 37.237 333 192 7 7 331 9 332 8.19e-59 198
Msa1079770 AT2G29740.1 30.739 501 300 15 4 488 5 474 1.31e-55 193
Msa1079770 AT1G51210.1 31.731 416 242 13 7 416 18 397 1.93e-54 189
Msa1079770 AT1G22400.1 30.739 514 301 20 3 494 9 489 7.88e-52 184
Msa1079770 AT1G07250.1 28.687 495 312 15 10 490 7 474 6.00e-51 181
Msa1079770 AT1G06000.1 29.175 497 266 16 7 488 8 433 9.33e-51 179
Msa1079770 AT1G22360.1 28.880 509 298 18 7 489 8 478 2.18e-50 179
Msa1079770 AT4G15550.1 28.628 503 300 17 6 489 12 474 2.51e-50 179
Msa1079770 AT3G21760.1 28.125 512 309 16 7 490 2 482 2.75e-50 179
Msa1079770 AT1G78270.1 28.906 512 302 15 3 489 7 481 9.37e-50 178
Msa1079770 AT3G11340.1 28.770 504 287 14 1 490 1 446 1.52e-49 176
Msa1079770 AT2G29730.1 31.452 372 222 12 123 489 120 463 2.75e-49 176
Msa1079770 AT2G30150.2 29.779 497 279 18 9 490 13 454 4.33e-49 175
Msa1079770 AT3G21800.1 29.014 517 288 22 8 490 6 477 2.17e-48 174
Msa1079770 AT2G30150.1 29.675 492 276 18 14 490 2 438 5.75e-48 172
Msa1079770 AT1G22380.1 29.502 522 288 18 2 489 6 481 9.87e-48 172
Msa1079770 AT2G29750.1 28.713 505 306 16 4 489 5 474 1.02e-47 172
Msa1079770 AT1G01420.1 29.518 498 272 16 9 477 8 455 2.86e-47 171
Msa1079770 AT4G01070.1 28.571 497 291 14 9 483 8 462 3.07e-47 171
Msa1079770 AT1G01420.2 29.518 498 272 16 9 477 11 458 3.27e-47 171
Msa1079770 AT2G31750.1 30.219 503 280 18 7 490 6 456 3.47e-47 170
Msa1079770 AT3G16520.3 33.692 279 148 7 217 487 209 458 4.93e-47 170
Msa1079770 AT2G31750.2 30.237 506 276 19 7 490 6 456 5.60e-47 170
Msa1079770 AT2G29710.1 26.096 502 305 16 10 489 6 463 7.22e-47 169
Msa1079770 AT2G43820.1 31.383 376 225 11 119 491 104 449 1.02e-46 169
Msa1079770 AT1G22360.2 28.094 509 290 18 7 489 8 466 2.37e-46 168
Msa1079770 AT1G05560.1 29.719 498 289 21 9 492 5 455 2.55e-46 168
Msa1079770 AT1G05560.2 29.719 498 289 21 9 492 55 505 5.13e-46 168
Msa1079770 AT5G05860.1 27.926 487 300 13 8 489 8 448 5.27e-46 167
Msa1079770 AT4G15280.1 29.941 511 294 20 7 490 2 475 6.26e-46 167
Msa1079770 AT4G15280.2 29.961 514 296 20 4 490 31 507 1.12e-45 167
Msa1079770 AT3G02100.1 28.657 499 279 18 9 485 13 456 1.49e-45 166
Msa1079770 AT4G14090.1 29.448 489 288 19 9 487 13 454 7.68e-45 164
Msa1079770 AT4G15260.1 37.544 285 143 9 219 490 94 356 2.05e-44 160
Msa1079770 AT1G07260.1 32.267 375 220 13 123 489 124 472 2.39e-44 163
Msa1079770 AT5G05870.1 27.699 491 296 16 11 488 10 454 5.00e-44 162
Msa1079770 AT1G01390.1 29.861 432 246 13 9 416 8 406 7.20e-44 162
Msa1079770 AT1G05530.1 25.703 498 306 15 9 489 5 455 1.03e-43 160
Msa1079770 AT1G01390.2 29.861 432 246 13 9 416 25 423 1.20e-43 161
Msa1079770 AT2G31790.1 26.275 510 293 18 2 485 1 453 1.50e-43 160
Msa1079770 AT5G05880.1 27.733 494 292 18 8 488 7 448 1.85e-43 160
Msa1079770 AT1G24100.1 29.249 506 292 18 1 488 1 458 2.14e-43 160
Msa1079770 AT3G16520.2 33.333 264 142 7 217 472 209 446 4.00e-43 159
Msa1079770 AT1G07240.1 31.421 366 215 13 135 489 136 476 4.33e-43 159
Msa1079770 AT3G16520.1 38.462 208 105 5 217 416 209 401 7.20e-43 158
Msa1079770 AT1G22340.1 26.295 502 331 12 1 488 5 481 9.29e-43 159
Msa1079770 AT2G30140.1 26.978 493 293 18 9 488 13 451 1.74e-42 157
Msa1079770 AT2G30140.2 26.829 492 294 17 9 488 13 450 2.29e-42 157
Msa1079770 AT1G22370.2 28.515 505 310 19 2 489 6 476 3.63e-42 157
Msa1079770 AT2G18570.1 27.088 491 304 16 9 481 5 459 1.03e-41 155
Msa1079770 AT3G21780.1 27.713 516 294 16 7 490 2 470 2.45e-41 155
Msa1079770 AT4G15480.1 27.756 508 308 22 8 494 18 487 7.04e-41 154
Msa1079770 AT2G23260.1 27.551 490 311 13 3 488 4 453 7.80e-41 153
Msa1079770 AT3G21790.1 35.739 291 153 11 219 497 216 484 1.74e-40 152
Msa1079770 AT5G59590.1 25.859 495 307 15 4 488 5 449 3.48e-40 151
Msa1079770 AT5G59580.1 26.626 492 300 15 7 488 7 447 4.79e-40 150
Msa1079770 AT2G36970.1 25.787 508 312 16 7 491 8 473 7.19e-40 151
Msa1079770 AT3G50740.1 25.875 514 292 16 7 482 5 467 8.38e-40 150
Msa1079770 AT5G26310.1 26.172 512 285 19 7 481 5 460 1.00e-39 150
Msa1079770 AT5G66690.1 27.466 517 272 21 7 481 5 460 4.11e-39 149
Msa1079770 AT2G43840.2 25.657 495 304 13 9 491 7 449 4.90e-39 148
Msa1079770 AT2G43840.1 25.657 495 304 13 9 491 7 449 6.61e-39 147
Msa1079770 AT5G49690.1 27.601 471 268 16 8 458 9 426 1.11e-38 147
Msa1079770 AT1G05675.1 27.181 493 294 18 9 485 6 449 3.35e-38 145
Msa1079770 AT5G65550.1 27.517 447 252 16 1 421 1 401 3.80e-38 145
Msa1079770 AT4G15490.1 26.824 507 302 20 9 491 8 469 5.33e-38 145
Msa1079770 AT2G18560.1 33.813 278 148 7 217 481 115 369 8.42e-38 143
Msa1079770 AT2G23250.1 29.079 478 283 19 18 488 7 435 8.65e-38 144
Msa1079770 AT3G46670.1 25.971 489 296 17 11 486 11 446 3.43e-37 142
Msa1079770 AT1G05680.1 26.854 499 288 18 9 485 6 449 3.50e-37 142
Msa1079770 AT5G05900.1 26.477 491 301 15 8 488 7 447 4.59e-37 142
Msa1079770 AT3G55700.1 26.547 501 289 19 11 490 10 452 8.13e-37 142
Msa1079770 AT4G36770.1 27.148 512 281 19 7 482 2 457 1.21e-36 141
Msa1079770 AT5G05890.1 26.931 505 300 17 8 499 7 455 1.93e-36 140
Msa1079770 AT3G21750.1 25.686 510 310 17 7 489 2 469 2.59e-36 140
Msa1079770 AT5G17050.1 26.380 489 303 17 3 481 8 449 2.26e-35 138
Msa1079770 AT2G16890.4 30.218 321 192 12 9 317 9 309 2.53e-35 134
Msa1079770 AT2G16890.1 30.218 321 192 12 9 317 9 309 2.53e-35 134
Msa1079770 AT5G17030.1 30.769 273 158 6 217 489 215 456 3.54e-35 137
Msa1079770 AT3G21560.1 26.733 505 311 21 6 491 11 475 6.89e-35 137
Msa1079770 AT3G46660.1 27.105 487 299 18 11 488 16 455 1.33e-34 135
Msa1079770 AT5G17040.2 32.342 269 151 7 222 490 102 339 3.13e-34 132
Msa1079770 AT5G17040.1 32.342 269 151 7 222 490 204 441 8.96e-34 133
Msa1079770 AT3G46650.1 24.949 489 292 16 5 484 6 428 9.36e-34 133
Msa1079770 AT2G28080.1 27.613 507 283 21 14 491 23 474 1.54e-33 133
Msa1079770 AT4G15500.1 25.984 508 310 19 1 489 3 463 2.04e-33 132
Msa1079770 AT3G46680.1 25.567 485 310 17 1 479 1 440 9.67e-33 130
Msa1079770 AT3G46690.1 24.544 493 293 17 7 479 7 440 1.11e-32 130
Msa1079770 AT5G38010.1 26.654 514 283 19 4 488 5 453 1.61e-32 129
Msa1079770 AT1G30530.1 26.305 498 289 20 10 490 16 452 2.08e-31 126
Msa1079770 AT3G55710.1 26.923 416 266 15 11 416 10 397 4.25e-31 125
Msa1079770 AT1G22370.1 31.868 273 164 8 219 489 54 306 5.39e-31 122
Msa1079770 AT3G46720.1 26.166 493 276 19 7 479 7 431 1.68e-30 124
Msa1079770 AT3G46700.1 24.131 489 291 16 7 477 7 433 2.02e-30 123
Msa1079770 AT3G22250.1 26.755 527 277 27 2 488 3 460 3.45e-30 123
Msa1079770 AT2G26480.1 24.899 494 303 13 11 491 10 448 3.51e-30 123
Msa1079770 AT1G64910.1 24.667 450 284 13 8 452 5 404 1.97e-28 118
Msa1079770 AT2G15490.2 33.505 194 109 6 7 188 5 190 1.38e-27 112
Msa1079770 AT5G38040.1 32.719 217 115 6 279 488 257 449 2.03e-27 115
Msa1079770 AT3G29630.1 25.280 447 290 13 7 452 4 407 1.16e-25 110
Msa1079770 AT4G27570.1 25.450 444 287 14 7 442 5 412 1.25e-25 109
Msa1079770 AT4G27560.1 25.225 444 288 14 7 442 5 412 1.04e-24 107
Msa1079770 AT5G53990.1 23.333 450 290 12 8 452 5 404 5.41e-23 102
Msa1079770 AT1G50580.1 24.449 454 297 13 7 459 4 412 2.13e-22 100
Msa1079770 AT3G29630.2 24.777 448 265 15 7 452 4 381 2.19e-22 99.8
Msa1079770 AT5G54010.1 24.183 459 303 14 7 461 4 421 2.61e-22 100
Msa1079770 AT2G22590.1 33.505 194 117 4 271 463 263 445 2.97e-22 100
Msa1079770 AT1G64920.1 24.242 462 291 15 7 459 4 415 1.52e-21 97.8
Msa1079770 AT4G09500.2 23.841 453 290 14 5 452 2 404 4.43e-20 93.2
Msa1079770 AT5G37950.2 27.273 297 175 10 103 391 74 337 7.03e-20 91.3
Msa1079770 AT5G54060.1 23.729 413 272 13 8 407 12 394 1.07e-19 92.4
Msa1079770 AT4G09500.1 23.163 449 273 13 5 452 2 379 3.99e-19 90.1
Msa1079770 AT5G37950.1 31.844 179 98 5 219 391 183 343 2.66e-18 86.7
Msa1079770 AT2G22930.1 23.333 450 296 13 5 452 2 404 7.05e-18 86.7
Msa1079770 AT4G01070.2 27.052 329 197 11 9 325 8 305 7.09e-16 79.3

Find 90 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATGTTGGTGTGAAAAT+TGG 0.221494 7_2:+78982860 Msa1079770:CDS
TGGTAGAGGCCTAGTGATTA+AGG 0.260649 7_2:+78982673 Msa1079770:CDS
ACTCCAAGAAAAGAAATTCT+TGG 0.289078 7_2:-78982056 None:intergenic
AATTAGGGAGCTTGGTAAAA+TGG 0.291320 7_2:+78983009 Msa1079770:CDS
AACAACACAAAGTGTAGTTT+TGG 0.293786 7_2:-78981648 None:intergenic
TTCTTTATTAGCCATGATTT+CGG 0.324496 7_2:-78982129 None:intergenic
AACAGGACTAGGAGGATTAA+AGG 0.325737 7_2:+78982208 Msa1079770:CDS
TCTCTTAAAACCCAAATAAA+AGG 0.326741 7_2:-78982587 None:intergenic
TCTTCCTCGCCCCATTTCAT+AGG 0.327419 7_2:-78982893 None:intergenic
GCTTGGTAAAATGGCTAAAA+AGG 0.328408 7_2:+78983018 Msa1079770:CDS
TAAATGTTGGTGTGAAAATT+GGG 0.334829 7_2:+78982861 Msa1079770:CDS
CTAGCTACATGAAATGTATA+TGG 0.338578 7_2:-78982020 None:intergenic
GTAGCACGTTATGTTGAATA+TGG 0.338975 7_2:+78981795 Msa1079770:CDS
AATGATAAAGTTTGGTGTAT+TGG 0.348119 7_2:+78982353 Msa1079770:CDS
AGGTAATAATAAAATTAATA+AGG 0.349413 7_2:+78982421 Msa1079770:CDS
AAGAGGAATAGAAATGTTAA+TGG 0.353560 7_2:+78982952 Msa1079770:CDS
ACTTAGTAACACGGATTACT+TGG 0.359179 7_2:+78982385 Msa1079770:CDS
ATATGCAAGGGATTATAAAA+AGG 0.364687 7_2:+78982325 Msa1079770:CDS
AGAGCTTGGTTTAGCATTAG+AGG 0.368487 7_2:+78982553 Msa1079770:CDS
TCAAGATTCTCACACCCTTC+TGG 0.375312 7_2:-78981870 None:intergenic
CTTTGTGTTGTTTCCAATGA+TGG 0.396641 7_2:+78981659 Msa1079770:CDS
GAATTTCCATGTAAAGAGTC+TGG 0.397254 7_2:+78981843 Msa1079770:CDS
GAAGCTGAAACGGGTAGTTA+TGG 0.406971 7_2:+78982266 Msa1079770:CDS
GGGTGAAGAGTCCTATGAAA+TGG 0.408750 7_2:+78982882 Msa1079770:CDS
AGTGTTATCTATGCATGCTT+TGG 0.411358 7_2:+78982497 Msa1079770:CDS
GTTGTACAAATATTAAATGT+TGG 0.418685 7_2:+78982848 Msa1079770:CDS
AGGTAAGAAATGATAAAGTT+TGG 0.421595 7_2:+78982345 Msa1079770:CDS
ATATTGTCACATCAAGCAAT+TGG 0.426271 7_2:+78982716 Msa1079770:CDS
AAGCTGAAACGGGTAGTTAT+GGG 0.431787 7_2:+78982267 Msa1079770:CDS
TTATAATCCCTTGCATATGT+TGG 0.442755 7_2:-78982320 None:intergenic
CAATAATATGGCCGAAATCA+TGG 0.446915 7_2:+78982118 Msa1079770:CDS
TAAGGATTCAAATGATGAAT+GGG 0.449668 7_2:+78982439 Msa1079770:CDS
CAATGCATTGAGGAAGTTTG+AGG 0.452176 7_2:-78981916 None:intergenic
GGTGAAGAGTCCTATGAAAT+GGG 0.457328 7_2:+78982883 Msa1079770:CDS
AGGCCTAGTGATTAAGGGTT+GGG 0.460003 7_2:+78982679 Msa1079770:CDS
ATAAGGATTCAAATGATGAA+TGG 0.460628 7_2:+78982438 Msa1079770:CDS
TCAGAGATGATACAAGTTGC+TGG 0.461033 7_2:-78981987 None:intergenic
CTTTACATGGAAATTCAAGT+TGG 0.470893 7_2:-78981836 None:intergenic
TAACACGGATTACTTGGATA+AGG 0.475459 7_2:+78982391 Msa1079770:CDS
TCTGAATACTTTGAATTGCC+TGG 0.477717 7_2:+78982152 Msa1079770:CDS
GGATTTGAGGGAAGAATCAA+TGG 0.478326 7_2:+78982653 Msa1079770:CDS
CCACCACAGTTGATAGAGCT+TGG 0.479609 7_2:+78982539 Msa1079770:CDS
GAAATGACAATAGCACAAAC+AGG 0.482540 7_2:+78982191 Msa1079770:CDS
GACTTGCTTGAAGCTGAAAC+GGG 0.486016 7_2:+78982257 Msa1079770:CDS
CTTGAGGTGAGTGGATTTGA+GGG 0.487333 7_2:+78982641 Msa1079770:CDS
TGACTTGCTTGAAGCTGAAA+CGG 0.493725 7_2:+78982256 Msa1079770:CDS
AAGAAAGAAGATGTTGAAAG+AGG 0.498045 7_2:+78982935 Msa1079770:CDS
GCTTCTTAACACACTGCGGT+TGG 0.503265 7_2:+78982741 Msa1079770:CDS
GCTTGAGGTGAGTGGATTTG+AGG 0.505611 7_2:+78982640 Msa1079770:CDS
ATGTGGCCTTGTGCCATCAT+TGG 0.505701 7_2:-78981672 None:intergenic
GGTAGAGGCCTAGTGATTAA+GGG 0.506430 7_2:+78982674 Msa1079770:CDS
TCCGTGTTACTAAGTGATAC+AGG 0.506827 7_2:-78982377 None:intergenic
CTTGACATGCTACCTGCACT+TGG 0.511668 7_2:+78981888 Msa1079770:CDS
GGTAATCCAGACTCTTTACA+TGG 0.514181 7_2:-78981849 None:intergenic
ACAGGACTAGGAGGATTAAA+GGG 0.516089 7_2:+78982209 Msa1079770:CDS
GAGGATTAAAGGGCGAAGCT+TGG 0.516692 7_2:+78982219 Msa1079770:CDS
AATTATGCATATTGAAGAGA+TGG 0.518442 7_2:-78982088 None:intergenic
CAGGTGTGCCAATGGTTACA+TGG 0.536364 7_2:+78982789 Msa1079770:CDS
ACTCTAGAAGCAATATGTGC+AGG 0.540636 7_2:+78982770 Msa1079770:CDS
TTTGAGGCCATGCCAAGTGC+AGG 0.543958 7_2:-78981900 None:intergenic
CATGCTACCTGCACTTGGCA+TGG 0.544149 7_2:+78981893 Msa1079770:CDS
TTGTCACATCAAGCAATTGG+AGG 0.555966 7_2:+78982719 Msa1079770:CDS
AAAAGTGGCCATGTAACCAT+TGG 0.565009 7_2:-78982797 None:intergenic
GAGGGAAGAATCAATGGTAG+AGG 0.568339 7_2:+78982659 Msa1079770:CDS
GAGGCCTAGTGATTAAGGGT+TGG 0.570136 7_2:+78982678 Msa1079770:CDS
GAGCCCAACCCTTAATCACT+AGG 0.571445 7_2:-78982682 None:intergenic
ACAATAGCACAAACAGGACT+AGG 0.572414 7_2:+78982197 Msa1079770:CDS
GGAAGAAGAAAGTGACGTGT+TGG 0.576555 7_2:+78982910 Msa1079770:CDS
GGAGAAACTTCAATGCATTG+AGG 0.579276 7_2:-78981926 None:intergenic
AGGCCACATGATCCCCATGA+TGG 0.587737 7_2:+78981686 Msa1079770:CDS
GAGTCCTATGAAATGGGGCG+AGG 0.588467 7_2:+78982889 Msa1079770:CDS
AAAGAGTCTGGATTACCAGA+AGG 0.592502 7_2:+78981855 Msa1079770:CDS
TGGCTTGATTCTCAGAAACA+AGG 0.602159 7_2:+78982473 Msa1079770:CDS
AGTTAGAGCCAACATATGCA+AGG 0.605309 7_2:+78982312 Msa1079770:CDS
TGTCCATCATGGGGATCATG+TGG 0.608604 7_2:-78981689 None:intergenic
TCCTGTATCACTTAGTAACA+CGG 0.612903 7_2:+78982376 Msa1079770:CDS
AAGAGTCTGGATTACCAGAA+GGG 0.616408 7_2:+78981856 Msa1079770:CDS
AAATGTTGGTGTGAAAATTG+GGG 0.617684 7_2:+78982862 Msa1079770:CDS
GGCTTGATTCTCAGAAACAA+GGG 0.627335 7_2:+78982474 Msa1079770:CDS
GTTAGAGCCAACATATGCAA+GGG 0.628142 7_2:+78982313 Msa1079770:CDS
TACTTGGATAAGGTTCAAAG+AGG 0.628427 7_2:+78982401 Msa1079770:CDS
CCAAGCTCTATCAACTGTGG+TGG 0.630706 7_2:-78982539 None:intergenic
ATGAATGGGATCACTTGAAG+TGG 0.644657 7_2:+78982453 Msa1079770:CDS
GTGAAGAGTCCTATGAAATG+GGG 0.658950 7_2:+78982884 Msa1079770:CDS
ATAGCACAAACAGGACTAGG+AGG 0.666893 7_2:+78982200 Msa1079770:CDS
TGTGACAATATCAATAGCTG+AGG 0.669080 7_2:-78982704 None:intergenic
AATATGTGCAGGTGTGCCAA+TGG 0.671879 7_2:+78982781 Msa1079770:CDS
TTGTTTCCAATGATGGCACA+AGG 0.685173 7_2:+78981666 Msa1079770:CDS
GGAGGCTTCTTAACACACTG+CGG 0.693423 7_2:+78982737 Msa1079770:CDS
AAACCAAGCTCTATCAACTG+TGG 0.705010 7_2:-78982542 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTAATAATAAAATTAATA+AGG + chr7_2:78982421-78982440 Msa1079770:CDS 10.0%
!! AGGTAATAATAAAATTAATA+AGG + chr7_2:78982421-78982440 Msa1079770:CDS 10.0%
!!! TAATTTTCATGTCAATAATA+TGG + chr7_2:78982106-78982125 Msa1079770:CDS 15.0%
!!! TAATTTTCATGTCAATAATA+TGG + chr7_2:78982106-78982125 Msa1079770:CDS 15.0%
!!! AACAAAAAGACCTTTTATTT+GGG + chr7_2:78982577-78982596 Msa1079770:CDS 20.0%
!! CTAAACATTCATTCAAAAAT+TGG - chr7_2:78982829-78982848 None:intergenic 20.0%
!! GTTGTACAAATATTAAATGT+TGG + chr7_2:78982848-78982867 Msa1079770:CDS 20.0%
!! AAGAAAGAAGAAAAAGAATT+AGG + chr7_2:78982993-78983012 Msa1079770:CDS 20.0%
!! AGAAAGAAGAAAAAGAATTA+GGG + chr7_2:78982994-78983013 Msa1079770:CDS 20.0%
!!! TTTTGAATTGGTATTTTCAT+TGG - chr7_2:78983134-78983153 None:intergenic 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG + chr7_2:78982577-78982596 Msa1079770:CDS 20.0%
!! CTAAACATTCATTCAAAAAT+TGG - chr7_2:78982829-78982848 None:intergenic 20.0%
!! GTTGTACAAATATTAAATGT+TGG + chr7_2:78982848-78982867 Msa1079770:CDS 20.0%
!! AAGAAAGAAGAAAAAGAATT+AGG + chr7_2:78982993-78983012 Msa1079770:CDS 20.0%
!! AGAAAGAAGAAAAAGAATTA+GGG + chr7_2:78982994-78983013 Msa1079770:CDS 20.0%
!!! TTTTGAATTGGTATTTTCAT+TGG - chr7_2:78983134-78983153 None:intergenic 20.0%
!! ATTCCAAGAATTTCTTTTCT+TGG + chr7_2:78982053-78982072 Msa1079770:CDS 25.0%
! AATTATGCATATTGAAGAGA+TGG - chr7_2:78982091-78982110 None:intergenic 25.0%
! TTCTTTATTAGCCATGATTT+CGG - chr7_2:78982132-78982151 None:intergenic 25.0%
!!! TTGTCATTTCAATTTTGTCA+GGG - chr7_2:78982181-78982200 None:intergenic 25.0%
!!! ATTGTCATTTCAATTTTGTC+AGG - chr7_2:78982182-78982201 None:intergenic 25.0%
! ATATGCAAGGGATTATAAAA+AGG + chr7_2:78982325-78982344 Msa1079770:CDS 25.0%
! AGGTAAGAAATGATAAAGTT+TGG + chr7_2:78982345-78982364 Msa1079770:CDS 25.0%
!!! AATGATAAAGTTTGGTGTAT+TGG + chr7_2:78982353-78982372 Msa1079770:CDS 25.0%
! ATAAGGATTCAAATGATGAA+TGG + chr7_2:78982438-78982457 Msa1079770:CDS 25.0%
! TAAGGATTCAAATGATGAAT+GGG + chr7_2:78982439-78982458 Msa1079770:CDS 25.0%
!! CAACAAAAAGACCTTTTATT+TGG + chr7_2:78982576-78982595 Msa1079770:CDS 25.0%
! TCTCTTAAAACCCAAATAAA+AGG - chr7_2:78982590-78982609 None:intergenic 25.0%
!!! TTTTATTTGGGTTTTAAGAG+AGG + chr7_2:78982589-78982608 Msa1079770:CDS 25.0%
!!! TTTATTTGGGTTTTAAGAGA+GGG + chr7_2:78982590-78982609 Msa1079770:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG + chr7_2:78982618-78982637 Msa1079770:CDS 25.0%
! TTAAATGTTGGTGTGAAAAT+TGG + chr7_2:78982860-78982879 Msa1079770:CDS 25.0%
! TAAATGTTGGTGTGAAAATT+GGG + chr7_2:78982861-78982880 Msa1079770:CDS 25.0%
! AAGAGGAATAGAAATGTTAA+TGG + chr7_2:78982952-78982971 Msa1079770:CDS 25.0%
!!! TACTTTTTTGCATGATATCT+TGG - chr7_2:78983090-78983109 None:intergenic 25.0%
! AGATATCATGCAAAAAAGTA+AGG + chr7_2:78983090-78983109 Msa1079770:CDS 25.0%
!! ATTCCAAGAATTTCTTTTCT+TGG + chr7_2:78982053-78982072 Msa1079770:CDS 25.0%
! AATTATGCATATTGAAGAGA+TGG - chr7_2:78982091-78982110 None:intergenic 25.0%
! TTCTTTATTAGCCATGATTT+CGG - chr7_2:78982132-78982151 None:intergenic 25.0%
!!! TTGTCATTTCAATTTTGTCA+GGG - chr7_2:78982181-78982200 None:intergenic 25.0%
!!! ATTGTCATTTCAATTTTGTC+AGG - chr7_2:78982182-78982201 None:intergenic 25.0%
! ATATGCAAGGGATTATAAAA+AGG + chr7_2:78982325-78982344 Msa1079770:CDS 25.0%
! AGGTAAGAAATGATAAAGTT+TGG + chr7_2:78982345-78982364 Msa1079770:CDS 25.0%
!!! AATGATAAAGTTTGGTGTAT+TGG + chr7_2:78982353-78982372 Msa1079770:CDS 25.0%
! ATAAGGATTCAAATGATGAA+TGG + chr7_2:78982438-78982457 Msa1079770:CDS 25.0%
! TAAGGATTCAAATGATGAAT+GGG + chr7_2:78982439-78982458 Msa1079770:CDS 25.0%
!! CAACAAAAAGACCTTTTATT+TGG + chr7_2:78982576-78982595 Msa1079770:CDS 25.0%
! TCTCTTAAAACCCAAATAAA+AGG - chr7_2:78982590-78982609 None:intergenic 25.0%
!!! TTTTATTTGGGTTTTAAGAG+AGG + chr7_2:78982589-78982608 Msa1079770:CDS 25.0%
!!! TTTATTTGGGTTTTAAGAGA+GGG + chr7_2:78982590-78982609 Msa1079770:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG + chr7_2:78982618-78982637 Msa1079770:CDS 25.0%
! TTAAATGTTGGTGTGAAAAT+TGG + chr7_2:78982860-78982879 Msa1079770:CDS 25.0%
! TAAATGTTGGTGTGAAAATT+GGG + chr7_2:78982861-78982880 Msa1079770:CDS 25.0%
! AAGAGGAATAGAAATGTTAA+TGG + chr7_2:78982952-78982971 Msa1079770:CDS 25.0%
!!! TACTTTTTTGCATGATATCT+TGG - chr7_2:78983090-78983109 None:intergenic 25.0%
! AGATATCATGCAAAAAAGTA+AGG + chr7_2:78983090-78983109 Msa1079770:CDS 25.0%
! ACAACACAAAGTGTAGTTTT+GGG - chr7_2:78981650-78981669 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG - chr7_2:78981651-78981670 None:intergenic 30.0%
! ATTTTTGCAATGTCCATCAT+GGG - chr7_2:78981702-78981721 None:intergenic 30.0%
!! TATTTTTGCAATGTCCATCA+TGG - chr7_2:78981703-78981722 None:intergenic 30.0%
GATGGACATTGCAAAAATAT+TGG + chr7_2:78981704-78981723 Msa1079770:CDS 30.0%
!!! TGAAACGAGATGCATTTTTT+GGG - chr7_2:78981767-78981786 None:intergenic 30.0%
CTTTACATGGAAATTCAAGT+TGG - chr7_2:78981839-78981858 None:intergenic 30.0%
CTAGCTACATGAAATGTATA+TGG - chr7_2:78982023-78982042 None:intergenic 30.0%
ACTCCAAGAAAAGAAATTCT+TGG - chr7_2:78982059-78982078 None:intergenic 30.0%
TTATAATCCCTTGCATATGT+TGG - chr7_2:78982323-78982342 None:intergenic 30.0%
ATATTGTCACATCAAGCAAT+TGG + chr7_2:78982716-78982735 Msa1079770:CDS 30.0%
AAATGTTGGTGTGAAAATTG+GGG + chr7_2:78982862-78982881 Msa1079770:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG + chr7_2:78982935-78982954 Msa1079770:CDS 30.0%
CATGCAAAAAAGTAAGGATA+TGG + chr7_2:78983096-78983115 Msa1079770:CDS 30.0%
! ACAACACAAAGTGTAGTTTT+GGG - chr7_2:78981650-78981669 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG - chr7_2:78981651-78981670 None:intergenic 30.0%
! ATTTTTGCAATGTCCATCAT+GGG - chr7_2:78981702-78981721 None:intergenic 30.0%
!! TATTTTTGCAATGTCCATCA+TGG - chr7_2:78981703-78981722 None:intergenic 30.0%
GATGGACATTGCAAAAATAT+TGG + chr7_2:78981704-78981723 Msa1079770:CDS 30.0%
!!! TGAAACGAGATGCATTTTTT+GGG - chr7_2:78981767-78981786 None:intergenic 30.0%
CTTTACATGGAAATTCAAGT+TGG - chr7_2:78981839-78981858 None:intergenic 30.0%
CTAGCTACATGAAATGTATA+TGG - chr7_2:78982023-78982042 None:intergenic 30.0%
ACTCCAAGAAAAGAAATTCT+TGG - chr7_2:78982059-78982078 None:intergenic 30.0%
TTATAATCCCTTGCATATGT+TGG - chr7_2:78982323-78982342 None:intergenic 30.0%
ATATTGTCACATCAAGCAAT+TGG + chr7_2:78982716-78982735 Msa1079770:CDS 30.0%
AAATGTTGGTGTGAAAATTG+GGG + chr7_2:78982862-78982881 Msa1079770:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG + chr7_2:78982935-78982954 Msa1079770:CDS 30.0%
CATGCAAAAAAGTAAGGATA+TGG + chr7_2:78983096-78983115 Msa1079770:CDS 30.0%
!!! AAAGTGTAGTTTTGGGTCTT+GGG - chr7_2:78981643-78981662 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG + chr7_2:78981659-78981678 Msa1079770:CDS 35.0%
! TTTTTGCAATGTCCATCATG+GGG - chr7_2:78981701-78981720 None:intergenic 35.0%
!!! GAAACGAGATGCATTTTTTG+GGG - chr7_2:78981766-78981785 None:intergenic 35.0%
!!! GTGAAACGAGATGCATTTTT+TGG - chr7_2:78981768-78981787 None:intergenic 35.0%
GTAGCACGTTATGTTGAATA+TGG + chr7_2:78981795-78981814 Msa1079770:CDS 35.0%
GAATTTCCATGTAAAGAGTC+TGG + chr7_2:78981843-78981862 Msa1079770:CDS 35.0%
! ACAGCTTTTCAACTTCTTGT+TGG - chr7_2:78981950-78981969 None:intergenic 35.0%
CAATAATATGGCCGAAATCA+TGG + chr7_2:78982118-78982137 Msa1079770:CDS 35.0%
TCTGAATACTTTGAATTGCC+TGG + chr7_2:78982152-78982171 Msa1079770:CDS 35.0%
GAAATGACAATAGCACAAAC+AGG + chr7_2:78982191-78982210 Msa1079770:CDS 35.0%
TCCTGTATCACTTAGTAACA+CGG + chr7_2:78982376-78982395 Msa1079770:CDS 35.0%
! ACTTAGTAACACGGATTACT+TGG + chr7_2:78982385-78982404 Msa1079770:CDS 35.0%
! TAACACGGATTACTTGGATA+AGG + chr7_2:78982391-78982410 Msa1079770:CDS 35.0%
TACTTGGATAAGGTTCAAAG+AGG + chr7_2:78982401-78982420 Msa1079770:CDS 35.0%
AGTGTTATCTATGCATGCTT+TGG + chr7_2:78982497-78982516 Msa1079770:CDS 35.0%
AGAGTTGAAAAAATGGCTTG+AGG + chr7_2:78982625-78982644 Msa1079770:CDS 35.0%
TGTGACAATATCAATAGCTG+AGG - chr7_2:78982707-78982726 None:intergenic 35.0%
AAAAATTGGTCCGCAAAAAG+TGG - chr7_2:78982815-78982834 None:intergenic 35.0%
AGAAAAAGAATTAGGGAGCT+TGG + chr7_2:78983001-78983020 Msa1079770:CDS 35.0%
AATTAGGGAGCTTGGTAAAA+TGG + chr7_2:78983009-78983028 Msa1079770:CDS 35.0%
GCTTGGTAAAATGGCTAAAA+AGG + chr7_2:78983018-78983037 Msa1079770:CDS 35.0%
CTAAAAAGGCTGTAGAAAGA+GGG + chr7_2:78983032-78983051 Msa1079770:CDS 35.0%
TAAAAAGGCTGTAGAAAGAG+GGG + chr7_2:78983033-78983052 Msa1079770:CDS 35.0%
!!! AAAGTGTAGTTTTGGGTCTT+GGG - chr7_2:78981643-78981662 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG + chr7_2:78981659-78981678 Msa1079770:CDS 35.0%
! TTTTTGCAATGTCCATCATG+GGG - chr7_2:78981701-78981720 None:intergenic 35.0%
!!! GAAACGAGATGCATTTTTTG+GGG - chr7_2:78981766-78981785 None:intergenic 35.0%
!!! GTGAAACGAGATGCATTTTT+TGG - chr7_2:78981768-78981787 None:intergenic 35.0%
GTAGCACGTTATGTTGAATA+TGG + chr7_2:78981795-78981814 Msa1079770:CDS 35.0%
GAATTTCCATGTAAAGAGTC+TGG + chr7_2:78981843-78981862 Msa1079770:CDS 35.0%
! ACAGCTTTTCAACTTCTTGT+TGG - chr7_2:78981950-78981969 None:intergenic 35.0%
CAATAATATGGCCGAAATCA+TGG + chr7_2:78982118-78982137 Msa1079770:CDS 35.0%
TCTGAATACTTTGAATTGCC+TGG + chr7_2:78982152-78982171 Msa1079770:CDS 35.0%
GAAATGACAATAGCACAAAC+AGG + chr7_2:78982191-78982210 Msa1079770:CDS 35.0%
TCCTGTATCACTTAGTAACA+CGG + chr7_2:78982376-78982395 Msa1079770:CDS 35.0%
! ACTTAGTAACACGGATTACT+TGG + chr7_2:78982385-78982404 Msa1079770:CDS 35.0%
! TAACACGGATTACTTGGATA+AGG + chr7_2:78982391-78982410 Msa1079770:CDS 35.0%
TACTTGGATAAGGTTCAAAG+AGG + chr7_2:78982401-78982420 Msa1079770:CDS 35.0%
AGTGTTATCTATGCATGCTT+TGG + chr7_2:78982497-78982516 Msa1079770:CDS 35.0%
AGAGTTGAAAAAATGGCTTG+AGG + chr7_2:78982625-78982644 Msa1079770:CDS 35.0%
TGTGACAATATCAATAGCTG+AGG - chr7_2:78982707-78982726 None:intergenic 35.0%
AAAAATTGGTCCGCAAAAAG+TGG - chr7_2:78982815-78982834 None:intergenic 35.0%
AGAAAAAGAATTAGGGAGCT+TGG + chr7_2:78983001-78983020 Msa1079770:CDS 35.0%
AATTAGGGAGCTTGGTAAAA+TGG + chr7_2:78983009-78983028 Msa1079770:CDS 35.0%
GCTTGGTAAAATGGCTAAAA+AGG + chr7_2:78983018-78983037 Msa1079770:CDS 35.0%
CTAAAAAGGCTGTAGAAAGA+GGG + chr7_2:78983032-78983051 Msa1079770:CDS 35.0%
TAAAAAGGCTGTAGAAAGAG+GGG + chr7_2:78983033-78983052 Msa1079770:CDS 35.0%
!!! CAAAGTGTAGTTTTGGGTCT+TGG - chr7_2:78981644-78981663 None:intergenic 40.0%
TTGTTTCCAATGATGGCACA+AGG + chr7_2:78981666-78981685 Msa1079770:CDS 40.0%
GGTAATCCAGACTCTTTACA+TGG - chr7_2:78981852-78981871 None:intergenic 40.0%
AAAGAGTCTGGATTACCAGA+AGG + chr7_2:78981855-78981874 Msa1079770:CDS 40.0%
AAGAGTCTGGATTACCAGAA+GGG + chr7_2:78981856-78981875 Msa1079770:CDS 40.0%
CAATGCATTGAGGAAGTTTG+AGG - chr7_2:78981919-78981938 None:intergenic 40.0%
GGAGAAACTTCAATGCATTG+AGG - chr7_2:78981929-78981948 None:intergenic 40.0%
TCAGAGATGATACAAGTTGC+TGG - chr7_2:78981990-78982009 None:intergenic 40.0%
! TCAATTTTGTCAGGGATACC+AGG - chr7_2:78982173-78982192 None:intergenic 40.0%
ACAATAGCACAAACAGGACT+AGG + chr7_2:78982197-78982216 Msa1079770:CDS 40.0%
AACAGGACTAGGAGGATTAA+AGG + chr7_2:78982208-78982227 Msa1079770:CDS 40.0%
ACAGGACTAGGAGGATTAAA+GGG + chr7_2:78982209-78982228 Msa1079770:CDS 40.0%
!! TGACTTGCTTGAAGCTGAAA+CGG + chr7_2:78982256-78982275 Msa1079770:CDS 40.0%
AAGCTGAAACGGGTAGTTAT+GGG + chr7_2:78982267-78982286 Msa1079770:CDS 40.0%
AGTTAGAGCCAACATATGCA+AGG + chr7_2:78982312-78982331 Msa1079770:CDS 40.0%
GTTAGAGCCAACATATGCAA+GGG + chr7_2:78982313-78982332 Msa1079770:CDS 40.0%
! TCCGTGTTACTAAGTGATAC+AGG - chr7_2:78982380-78982399 None:intergenic 40.0%
ATGAATGGGATCACTTGAAG+TGG + chr7_2:78982453-78982472 Msa1079770:CDS 40.0%
TGGCTTGATTCTCAGAAACA+AGG + chr7_2:78982473-78982492 Msa1079770:CDS 40.0%
GGCTTGATTCTCAGAAACAA+GGG + chr7_2:78982474-78982493 Msa1079770:CDS 40.0%
AAACCAAGCTCTATCAACTG+TGG - chr7_2:78982545-78982564 None:intergenic 40.0%
AGAGCTTGGTTTAGCATTAG+AGG + chr7_2:78982553-78982572 Msa1079770:CDS 40.0%
AAAAAATGGCTTGAGGTGAG+TGG + chr7_2:78982632-78982651 Msa1079770:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG + chr7_2:78982653-78982672 Msa1079770:CDS 40.0%
TTGTCACATCAAGCAATTGG+AGG + chr7_2:78982719-78982738 Msa1079770:CDS 40.0%
! ACTCTAGAAGCAATATGTGC+AGG + chr7_2:78982770-78982789 Msa1079770:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG - chr7_2:78982800-78982819 None:intergenic 40.0%
GGTGAAGAGTCCTATGAAAT+GGG + chr7_2:78982883-78982902 Msa1079770:CDS 40.0%
GTGAAGAGTCCTATGAAATG+GGG + chr7_2:78982884-78982903 Msa1079770:CDS 40.0%
GCTAAAAAGGCTGTAGAAAG+AGG + chr7_2:78983031-78983050 Msa1079770:CDS 40.0%
AAAAAGGCTGTAGAAAGAGG+GGG + chr7_2:78983034-78983053 Msa1079770:CDS 40.0%
!!! CAAAGTGTAGTTTTGGGTCT+TGG - chr7_2:78981644-78981663 None:intergenic 40.0%
TTGTTTCCAATGATGGCACA+AGG + chr7_2:78981666-78981685 Msa1079770:CDS 40.0%
GGTAATCCAGACTCTTTACA+TGG - chr7_2:78981852-78981871 None:intergenic 40.0%
AAAGAGTCTGGATTACCAGA+AGG + chr7_2:78981855-78981874 Msa1079770:CDS 40.0%
AAGAGTCTGGATTACCAGAA+GGG + chr7_2:78981856-78981875 Msa1079770:CDS 40.0%
CAATGCATTGAGGAAGTTTG+AGG - chr7_2:78981919-78981938 None:intergenic 40.0%
GGAGAAACTTCAATGCATTG+AGG - chr7_2:78981929-78981948 None:intergenic 40.0%
TCAGAGATGATACAAGTTGC+TGG - chr7_2:78981990-78982009 None:intergenic 40.0%
! TCAATTTTGTCAGGGATACC+AGG - chr7_2:78982173-78982192 None:intergenic 40.0%
ACAATAGCACAAACAGGACT+AGG + chr7_2:78982197-78982216 Msa1079770:CDS 40.0%
AACAGGACTAGGAGGATTAA+AGG + chr7_2:78982208-78982227 Msa1079770:CDS 40.0%
ACAGGACTAGGAGGATTAAA+GGG + chr7_2:78982209-78982228 Msa1079770:CDS 40.0%
!! TGACTTGCTTGAAGCTGAAA+CGG + chr7_2:78982256-78982275 Msa1079770:CDS 40.0%
AAGCTGAAACGGGTAGTTAT+GGG + chr7_2:78982267-78982286 Msa1079770:CDS 40.0%
AGTTAGAGCCAACATATGCA+AGG + chr7_2:78982312-78982331 Msa1079770:CDS 40.0%
GTTAGAGCCAACATATGCAA+GGG + chr7_2:78982313-78982332 Msa1079770:CDS 40.0%
! TCCGTGTTACTAAGTGATAC+AGG - chr7_2:78982380-78982399 None:intergenic 40.0%
ATGAATGGGATCACTTGAAG+TGG + chr7_2:78982453-78982472 Msa1079770:CDS 40.0%
TGGCTTGATTCTCAGAAACA+AGG + chr7_2:78982473-78982492 Msa1079770:CDS 40.0%
GGCTTGATTCTCAGAAACAA+GGG + chr7_2:78982474-78982493 Msa1079770:CDS 40.0%
AAACCAAGCTCTATCAACTG+TGG - chr7_2:78982545-78982564 None:intergenic 40.0%
AGAGCTTGGTTTAGCATTAG+AGG + chr7_2:78982553-78982572 Msa1079770:CDS 40.0%
AAAAAATGGCTTGAGGTGAG+TGG + chr7_2:78982632-78982651 Msa1079770:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG + chr7_2:78982653-78982672 Msa1079770:CDS 40.0%
TTGTCACATCAAGCAATTGG+AGG + chr7_2:78982719-78982738 Msa1079770:CDS 40.0%
! ACTCTAGAAGCAATATGTGC+AGG + chr7_2:78982770-78982789 Msa1079770:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG - chr7_2:78982800-78982819 None:intergenic 40.0%
GGTGAAGAGTCCTATGAAAT+GGG + chr7_2:78982883-78982902 Msa1079770:CDS 40.0%
GTGAAGAGTCCTATGAAATG+GGG + chr7_2:78982884-78982903 Msa1079770:CDS 40.0%
GCTAAAAAGGCTGTAGAAAG+AGG + chr7_2:78983031-78983050 Msa1079770:CDS 40.0%
AAAAAGGCTGTAGAAAGAGG+GGG + chr7_2:78983034-78983053 Msa1079770:CDS 40.0%
!!! ACGAGATGCATTTTTTGGGG+TGG - chr7_2:78981763-78981782 None:intergenic 45.0%
TCAAGATTCTCACACCCTTC+TGG - chr7_2:78981873-78981892 None:intergenic 45.0%
ATAGCACAAACAGGACTAGG+AGG + chr7_2:78982200-78982219 Msa1079770:CDS 45.0%
! GACTTGCTTGAAGCTGAAAC+GGG + chr7_2:78982257-78982276 Msa1079770:CDS 45.0%
GAAGCTGAAACGGGTAGTTA+TGG + chr7_2:78982266-78982285 Msa1079770:CDS 45.0%
! CTTGAGGTGAGTGGATTTGA+GGG + chr7_2:78982641-78982660 Msa1079770:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG + chr7_2:78982659-78982678 Msa1079770:CDS 45.0%
TGGTAGAGGCCTAGTGATTA+AGG + chr7_2:78982673-78982692 Msa1079770:CDS 45.0%
GGTAGAGGCCTAGTGATTAA+GGG + chr7_2:78982674-78982693 Msa1079770:CDS 45.0%
AGGCCTAGTGATTAAGGGTT+GGG + chr7_2:78982679-78982698 Msa1079770:CDS 45.0%
AATATGTGCAGGTGTGCCAA+TGG + chr7_2:78982781-78982800 Msa1079770:CDS 45.0%
!!! GGTTACATGGCCACTTTTTG+CGG + chr7_2:78982802-78982821 Msa1079770:CDS 45.0%
GGGTGAAGAGTCCTATGAAA+TGG + chr7_2:78982882-78982901 Msa1079770:CDS 45.0%
GGAAGAAGAAAGTGACGTGT+TGG + chr7_2:78982910-78982929 Msa1079770:CDS 45.0%
!!! ACGAGATGCATTTTTTGGGG+TGG - chr7_2:78981763-78981782 None:intergenic 45.0%
TCAAGATTCTCACACCCTTC+TGG - chr7_2:78981873-78981892 None:intergenic 45.0%
ATAGCACAAACAGGACTAGG+AGG + chr7_2:78982200-78982219 Msa1079770:CDS 45.0%
! GACTTGCTTGAAGCTGAAAC+GGG + chr7_2:78982257-78982276 Msa1079770:CDS 45.0%
GAAGCTGAAACGGGTAGTTA+TGG + chr7_2:78982266-78982285 Msa1079770:CDS 45.0%
! CTTGAGGTGAGTGGATTTGA+GGG + chr7_2:78982641-78982660 Msa1079770:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG + chr7_2:78982659-78982678 Msa1079770:CDS 45.0%
TGGTAGAGGCCTAGTGATTA+AGG + chr7_2:78982673-78982692 Msa1079770:CDS 45.0%
GGTAGAGGCCTAGTGATTAA+GGG + chr7_2:78982674-78982693 Msa1079770:CDS 45.0%
AGGCCTAGTGATTAAGGGTT+GGG + chr7_2:78982679-78982698 Msa1079770:CDS 45.0%
AATATGTGCAGGTGTGCCAA+TGG + chr7_2:78982781-78982800 Msa1079770:CDS 45.0%
!!! GGTTACATGGCCACTTTTTG+CGG + chr7_2:78982802-78982821 Msa1079770:CDS 45.0%
GGGTGAAGAGTCCTATGAAA+TGG + chr7_2:78982882-78982901 Msa1079770:CDS 45.0%
GGAAGAAGAAAGTGACGTGT+TGG + chr7_2:78982910-78982929 Msa1079770:CDS 45.0%
!! ATGTGGCCTTGTGCCATCAT+TGG - chr7_2:78981675-78981694 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG - chr7_2:78981692-78981711 None:intergenic 50.0%
CTTGACATGCTACCTGCACT+TGG + chr7_2:78981888-78981907 Msa1079770:CDS 50.0%
GAGGATTAAAGGGCGAAGCT+TGG + chr7_2:78982219-78982238 Msa1079770:CDS 50.0%
CCAAGCTCTATCAACTGTGG+TGG - chr7_2:78982542-78982561 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+TGG + chr7_2:78982539-78982558 Msa1079770:CDS 50.0%
! GCTTGAGGTGAGTGGATTTG+AGG + chr7_2:78982640-78982659 Msa1079770:CDS 50.0%
GAGGCCTAGTGATTAAGGGT+TGG + chr7_2:78982678-78982697 Msa1079770:CDS 50.0%
GAGCCCAACCCTTAATCACT+AGG - chr7_2:78982685-78982704 None:intergenic 50.0%
GGAGGCTTCTTAACACACTG+CGG + chr7_2:78982737-78982756 Msa1079770:CDS 50.0%
GCTTCTTAACACACTGCGGT+TGG + chr7_2:78982741-78982760 Msa1079770:CDS 50.0%
CAGGTGTGCCAATGGTTACA+TGG + chr7_2:78982789-78982808 Msa1079770:CDS 50.0%
TCTTCCTCGCCCCATTTCAT+AGG - chr7_2:78982896-78982915 None:intergenic 50.0%
!! ATGTGGCCTTGTGCCATCAT+TGG - chr7_2:78981675-78981694 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG - chr7_2:78981692-78981711 None:intergenic 50.0%
CTTGACATGCTACCTGCACT+TGG + chr7_2:78981888-78981907 Msa1079770:CDS 50.0%
GAGGATTAAAGGGCGAAGCT+TGG + chr7_2:78982219-78982238 Msa1079770:CDS 50.0%
CCAAGCTCTATCAACTGTGG+TGG - chr7_2:78982542-78982561 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+TGG + chr7_2:78982539-78982558 Msa1079770:CDS 50.0%
! GCTTGAGGTGAGTGGATTTG+AGG + chr7_2:78982640-78982659 Msa1079770:CDS 50.0%
GAGGCCTAGTGATTAAGGGT+TGG + chr7_2:78982678-78982697 Msa1079770:CDS 50.0%
GAGCCCAACCCTTAATCACT+AGG - chr7_2:78982685-78982704 None:intergenic 50.0%
GGAGGCTTCTTAACACACTG+CGG + chr7_2:78982737-78982756 Msa1079770:CDS 50.0%
GCTTCTTAACACACTGCGGT+TGG + chr7_2:78982741-78982760 Msa1079770:CDS 50.0%
CAGGTGTGCCAATGGTTACA+TGG + chr7_2:78982789-78982808 Msa1079770:CDS 50.0%
TCTTCCTCGCCCCATTTCAT+AGG - chr7_2:78982896-78982915 None:intergenic 50.0%
AGGCCACATGATCCCCATGA+TGG + chr7_2:78981686-78981705 Msa1079770:CDS 55.0%
CATGCTACCTGCACTTGGCA+TGG + chr7_2:78981893-78981912 Msa1079770:CDS 55.0%
! TTTGAGGCCATGCCAAGTGC+AGG - chr7_2:78981903-78981922 None:intergenic 55.0%
GAGTCCTATGAAATGGGGCG+AGG + chr7_2:78982889-78982908 Msa1079770:CDS 55.0%
AGGCCACATGATCCCCATGA+TGG + chr7_2:78981686-78981705 Msa1079770:CDS 55.0%
CATGCTACCTGCACTTGGCA+TGG + chr7_2:78981893-78981912 Msa1079770:CDS 55.0%
! TTTGAGGCCATGCCAAGTGC+AGG - chr7_2:78981903-78981922 None:intergenic 55.0%
GAGTCCTATGAAATGGGGCG+AGG + chr7_2:78982889-78982908 Msa1079770:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78981633 78983156 78981633 ID=Msa1079770;Name=Msa1079770
chr7_2 mRNA 78981633 78983156 78981633 ID=Msa1079770-mRNA-1;Parent=Msa1079770;Name=Msa1079770-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|507
chr7_2 exon 78981633 78983156 78981633 ID=Msa1079770-mRNA-1:exon:19777;Parent=Msa1079770-mRNA-1
chr7_2 CDS 78981633 78983156 78981633 ID=Msa1079770-mRNA-1:cds;Parent=Msa1079770-mRNA-1
Gene Sequence

>Msa1079770

ATGGTATCCCAAGACCCAAAACTACACTTTGTGTTGTTTCCAATGATGGCACAAGGCCACATGATCCCCATGATGGACATTGCAAAAATATTGGCACAACATCAAAATGTTATTGTTACAATAGTAACCACCCCAAAAAATGCATCTCGTTTCACATCAATTGTAGCACGTTATGTTGAATATGGTCTTCACATTCAATTAGTCCAACTTGAATTTCCATGTAAAGAGTCTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTACCTGCACTTGGCATGGCCTCAAACTTCCTCAATGCATTGAAGTTTCTCCAACAAGAAGTTGAAAAGCTGTTTGAAGAGTTCACAACACCAGCAACTTGTATCATCTCTGATATGTGTTTGCCATATACATTTCATGTAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTCTTGGAGTAAGTTGCTTCCATCTCTTCAATATGCATAATTTTCATGTCAATAATATGGCCGAAATCATGGCTAATAAAGAATCTGAATACTTTGAATTGCCTGGTATCCCTGACAAAATTGAAATGACAATAGCACAAACAGGACTAGGAGGATTAAAGGGCGAAGCTTGGAAACAATTTAATGATGACTTGCTTGAAGCTGAAACGGGTAGTTATGGGATGCTCGTGAATTCTTTTGAAGAGTTAGAGCCAACATATGCAAGGGATTATAAAAAGGTAAGAAATGATAAAGTTTGGTGTATTGGTCCTGTATCACTTAGTAACACGGATTACTTGGATAAGGTTCAAAGAGGTAATAATAAAATTAATAAGGATTCAAATGATGAATGGGATCACTTGAAGTGGCTTGATTCTCAGAAACAAGGGAGTGTTATCTATGCATGCTTTGGAAGTTTATGCAATTTAACACCACCACAGTTGATAGAGCTTGGTTTAGCATTAGAGGCAACAAAAAGACCTTTTATTTGGGTTTTAAGAGAGGGAAATCAGTTAGAAGAGTTGAAAAAATGGCTTGAGGTGAGTGGATTTGAGGGAAGAATCAATGGTAGAGGCCTAGTGATTAAGGGTTGGGCTCCTCAGCTATTGATATTGTCACATCAAGCAATTGGAGGCTTCTTAACACACTGCGGTTGGAATTCTACTCTAGAAGCAATATGTGCAGGTGTGCCAATGGTTACATGGCCACTTTTTGCGGACCAATTTTTGAATGAATGTTTAGTTGTACAAATATTAAATGTTGGTGTGAAAATTGGGGTGAAGAGTCCTATGAAATGGGGCGAGGAAGAAGAAAGTGACGTGTTGGTCAAGAAAGAAGATGTTGAAAGAGGAATAGAAATGTTAATGGATGATACAAGTGAAAGTGAAGAAAGAAGAAAAAGAATTAGGGAGCTTGGTAAAATGGCTAAAAAGGCTGTAGAAAGAGGGGGATCTTCTCACTCTAATTTTACATTGTTTATCCAAGATATCATGCAAAAAAGTAAGGATATGGTGTCATCATTTGCCAATGAAAATACCAATTCAAAATGA
Protein sequence

>Msa1079770

MVSQDPKLHFVLFPMMAQGHMIPMMDIAKILAQHQNVIVTIVTTPKNASRFTSIVARYVEYGLHIQLVQLEFPCKESGLPEGCENLDMLPALGMASNFLNALKFLQQEVEKLFEEFTTPATCIISDMCLPYTFHVARKFNIPRISFLGVSCFHLFNMHNFHVNNMAEIMANKESEYFELPGIPDKIEMTIAQTGLGGLKGEAWKQFNDDLLEAETGSYGMLVNSFEELEPTYARDYKKVRNDKVWCIGPVSLSNTDYLDKVQRGNNKINKDSNDEWDHLKWLDSQKQGSVIYACFGSLCNLTPPQLIELGLALEATKRPFIWVLREGNQLEELKKWLEVSGFEGRINGRGLVIKGWAPQLLILSHQAIGGFLTHCGWNSTLEAICAGVPMVTWPLFADQFLNECLVVQILNVGVKIGVKSPMKWGEEEESDVLVKKEDVERGIEMLMDDTSESEERRKRIRELGKMAKKAVERGGSSHSNFTLFIQDIMQKSKDMVSSFANENTNSK*