AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385940 MtrunA17_Chr3g0129301 95.442 724 9 1 1 724 1 700 0.0 1407
Msa1385940 MtrunA17_Chr2g0327291 29.305 604 371 11 59 656 21 574 6.56e-73 248
Msa1385940 MtrunA17_Chr2g0327291 26.016 246 151 3 457 674 64 306 2.82e-19 92.4
Msa1385940 MtrunA17_Chr4g0028471 29.412 561 350 8 99 656 57 574 9.67e-72 244
Msa1385940 MtrunA17_Chr4g0028471 26.316 247 149 4 457 674 64 306 2.32e-19 92.4
Msa1385940 MtrunA17_Chr8g0371361 27.830 636 368 15 83 680 131 713 5.98e-63 223
Msa1385940 MtrunA17_Chr8g0371361 26.736 288 169 7 457 705 154 438 3.99e-22 101
Msa1385940 MtrunA17_Chr3g0119921 27.979 579 364 11 97 660 166 706 1.77e-62 222
Msa1385940 MtrunA17_Chr7g0220881 27.520 625 360 15 96 680 144 715 5.79e-62 220
Msa1385940 MtrunA17_Chr7g0220881 26.389 288 170 6 457 705 154 438 2.77e-22 102
Msa1385940 MtrunA17_Chr1g0181461 28.499 593 355 13 116 680 10 561 1.46e-60 213
Msa1385940 MtrunA17_Chr1g0181461 29.310 290 161 9 469 716 12 299 4.46e-22 100
Msa1385940 MtrunA17_Chr3g0130211 31.383 188 87 6 446 607 21 192 5.67e-16 78.6
Msa1385940 MtrunA17_Chr1g0180601 27.236 246 152 8 454 674 1052 1295 1.02e-14 78.6
Msa1385940 MtrunA17_Chr8g0344651 26.383 235 149 7 451 663 592 824 2.17e-14 77.4
Msa1385940 MtrunA17_Chr7g0264631 26.016 246 155 8 454 674 1078 1321 3.02e-14 77.0
Msa1385940 MtrunA17_Chr4g0041871 27.632 228 139 7 454 658 1003 1227 4.16e-14 76.6
Msa1385940 MtrunA17_Chr1g0178481 29.231 195 111 7 461 630 384 576 2.07e-12 70.5
Msa1385940 MtrunA17_Chr5g0410921 30.811 185 103 7 468 630 370 551 7.47e-12 69.3
Msa1385940 MtrunA17_Chr5g0410921 24.506 253 158 9 427 650 955 1203 4.76e-11 66.6
Msa1385940 MtrunA17_Chr1g0156821 29.592 196 116 6 457 630 994 1189 9.34e-12 68.9
Msa1385940 MtrunA17_Chr7g0249091 27.826 230 128 6 456 648 85 313 2.07e-11 66.2
Msa1385940 MtrunA17_Chr3g0093091 24.436 266 172 6 476 712 642 907 2.54e-11 67.4
Msa1385940 MtrunA17_Chr3g0123411 28.079 203 124 6 468 650 919 1119 5.25e-11 66.2
Msa1385940 MtrunA17_Chr1g0211721 30.178 169 103 5 485 643 377 540 5.43e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385940 AT5G64840.1 76.093 732 127 7 1 724 1 692 0.0 1066
Msa1385940 AT5G09930.1 71.566 728 153 6 1 724 1 678 0.0 981
Msa1385940 AT5G60790.1 28.366 557 353 7 103 656 66 579 4.31e-68 235
Msa1385940 AT5G60790.1 26.016 246 151 4 457 674 69 311 7.14e-18 88.2
Msa1385940 AT1G64550.1 28.028 578 368 11 96 660 165 707 3.79e-65 229
Msa1385940 AT3G54540.2 27.087 587 360 13 106 662 163 711 7.83e-59 212
Msa1385940 AT3G54540.2 26.421 299 180 5 457 716 163 460 9.53e-24 107
Msa1385940 AT3G54540.1 27.087 587 360 13 106 662 163 711 7.83e-59 212
Msa1385940 AT3G54540.1 26.421 299 180 5 457 716 163 460 9.53e-24 107
Msa1385940 AT1G28010.1 26.961 204 123 6 471 652 389 588 3.92e-13 73.9
Msa1385940 AT1G28010.1 26.396 197 121 6 457 630 1006 1201 1.99e-11 68.2
Msa1385940 AT1G27940.2 25.778 225 137 8 452 652 155 373 5.12e-13 73.2
Msa1385940 AT1G27940.2 26.904 197 120 6 457 630 790 985 1.42e-12 72.0
Msa1385940 AT1G27940.1 25.778 225 137 8 452 652 369 587 9.22e-13 72.8
Msa1385940 AT1G27940.1 26.904 197 120 6 457 630 1004 1199 2.34e-12 71.2
Msa1385940 AT4G33460.1 31.313 198 101 8 457 630 40 226 1.20e-12 69.3
Msa1385940 AT5G52860.1 25.547 274 177 6 476 723 49 321 2.93e-12 70.5
Msa1385940 AT4G25960.1 27.391 230 143 7 468 677 415 640 2.96e-12 70.9
Msa1385940 AT3G28390.1 25.641 234 150 9 468 681 361 590 8.52e-12 69.3
Msa1385940 AT3G28345.1 23.132 281 188 10 454 710 356 632 1.69e-11 68.6
Msa1385940 AT1G10680.1 27.322 183 112 5 468 630 375 556 3.15e-11 67.8
Msa1385940 AT3G28415.2 27.556 225 137 9 471 674 363 582 3.40e-11 67.4
Msa1385940 AT3G28415.1 27.556 225 137 9 471 674 355 574 3.42e-11 67.4
Msa1385940 AT1G10680.2 27.322 183 112 5 468 630 375 556 3.92e-11 67.4
Msa1385940 AT5G46540.1 23.140 242 146 6 432 652 1000 1222 4.37e-11 67.0

Find 204 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATTTGCAGTATTATT+TGG 0.118260 tig0020778:-125920 Msa1385940:intron
TTGGATTTGGCTTTCAATTT+AGG 0.142201 tig0020778:+125835 None:intergenic
TACTTTACTAAAATTGATTA+TGG 0.188943 tig0020778:-128713 Msa1385940:CDS
ACCATCAACTCTACTTGTTT+TGG 0.234739 tig0020778:-127408 Msa1385940:CDS
ACGAGCTCAGGCTGTGAATT+TGG 0.235081 tig0020778:-130372 Msa1385940:CDS
AATGGAGGTTGCGGGGAAAT+TGG 0.247694 tig0020778:-130480 Msa1385940:CDS
GGAGTTGATGGGGAGGCTTT+TGG 0.263336 tig0020778:-130417 Msa1385940:CDS
GGTTAATTGGGAAGTGAAAA+AGG 0.267296 tig0020778:-130702 Msa1385940:CDS
CAGAAATTGGAAAGACTTCT+TGG 0.282365 tig0020778:-129017 Msa1385940:CDS
GACGATATTAAAGGACTTCT+TGG 0.283294 tig0020778:-128443 Msa1385940:CDS
TACCTTTGACATCTTGGATT+TGG 0.289284 tig0020778:+125822 None:intergenic
GAAGTTTACCTTTGACATCT+TGG 0.293270 tig0020778:+125816 None:intergenic
TCTCTGCCTCACACTTCTTC+CGG 0.293690 tig0020778:-131143 Msa1385940:five_prime_UTR
GTGGGTTTAGTTGGTGTAAA+TGG 0.300569 tig0020778:-130671 Msa1385940:CDS
GGTTTGGAGGAACCGGATTC+GGG 0.308979 tig0020778:-130614 Msa1385940:CDS
TCCAAAACAAGTAGAGTTGA+TGG 0.315178 tig0020778:+127407 None:intergenic
ACAGTTAGGAACTTGGATTT+TGG 0.319199 tig0020778:-128909 Msa1385940:CDS
AGTTGCTTACTCGTATTTCA+TGG 0.323148 tig0020778:+125292 None:intergenic
ACCTCAAGCATTTCTTTAGA+AGG 0.324032 tig0020778:+127359 None:intergenic
AGGTTTGGAGGAACCGGATT+CGG 0.327589 tig0020778:-130615 Msa1385940:CDS
AGAAGATTGTGTGGCGGTTA+TGG 0.334542 tig0020778:+131107 None:intergenic
CTCTGCCTCACACTTCTTCC+GGG 0.336471 tig0020778:-131142 Msa1385940:five_prime_UTR
ATTATAGCATTTGTGATTCC+TGG 0.339255 tig0020778:-125439 Msa1385940:three_prime_UTR
TCGCCTTTGAAAGAATATAC+TGG 0.341499 tig0020778:+129501 None:intergenic
TTAGGTGCCGGAGCAAGTTC+TGG 0.354938 tig0020778:-129401 Msa1385940:CDS
AACGGAAACAAATGAAAATC+AGG 0.359605 tig0020778:-128968 Msa1385940:CDS
GATGAGGATTATTGCAGGTT+TGG 0.363247 tig0020778:-130630 Msa1385940:CDS
TGTGAATGATTTGGAGTTGA+TGG 0.367327 tig0020778:-130429 Msa1385940:CDS
TTGATGCCTGAGCTTGGTTT+TGG 0.370792 tig0020778:-130323 Msa1385940:CDS
ACTTTACTAAAATTGATTAT+GGG 0.374049 tig0020778:-128712 Msa1385940:CDS
GTGTTAGTGTTGAAGGTGTT+GGG 0.375541 tig0020778:+130965 None:intergenic
ACAGGCTGAGGCACTTGATC+TGG 0.376554 tig0020778:-128516 Msa1385940:intron
TAACTATTTCGAGCAGAATC+AGG 0.379580 tig0020778:-128635 Msa1385940:intron
GAGTGCTTTCAAAGAGGAAA+TGG 0.382990 tig0020778:-130498 Msa1385940:CDS
TTCATTTGTTTCCGTTCAAA+TGG 0.384165 tig0020778:+128975 None:intergenic
GGGGTTAGTGTTAGTGTTGA+AGG 0.391042 tig0020778:+130958 None:intergenic
TTAATCACATTCCCCGAATC+CGG 0.391790 tig0020778:+130602 None:intergenic
TGAGGGTTCTGTGAATGATT+TGG 0.394197 tig0020778:-130438 Msa1385940:CDS
ATTGCCATTCTTGGTCCAAA+TGG 0.399808 tig0020778:-128748 Msa1385940:CDS
AAAGAGGAAATGGAGGTTGC+GGG 0.405864 tig0020778:-130488 Msa1385940:CDS
AAAATTGTTCTCTTCATGTA+TGG 0.407853 tig0020778:+125591 None:intergenic
GTACTCTTGCCACATCCATT+TGG 0.408591 tig0020778:+128733 None:intergenic
TGGAGGAGTGACGATATTAA+AGG 0.411374 tig0020778:-128452 Msa1385940:CDS
AGTGTTGAAGGTGTTGGGTT+TGG 0.414116 tig0020778:+130970 None:intergenic
GGTGAGAAAGTGGGTTTAGT+TGG 0.417873 tig0020778:-130680 Msa1385940:CDS
TTAGATTTATTCACCAAATG+AGG 0.419755 tig0020778:-125570 Msa1385940:three_prime_UTR
GACAAACTTCAATAAATTGC+CGG 0.421141 tig0020778:-131224 None:intergenic
TCATCTAACAACAACAAATC+TGG 0.426653 tig0020778:+129695 None:intergenic
CTCCGGTGAGGTCGAGGTGG+TGG 0.428069 tig0020778:+131050 None:intergenic
TAGAGGAAGCTGCCGAGGAC+TGG 0.429062 tig0020778:-128472 Msa1385940:CDS
AGTGTTAGTGTTGAAGGTGT+TGG 0.429428 tig0020778:+130964 None:intergenic
GGCAAATCTTACAATTGAAA+GGG 0.431561 tig0020778:-128779 Msa1385940:CDS
TATTGCAGGTTTGGAGGAAC+CGG 0.432241 tig0020778:-130621 Msa1385940:CDS
TTTGAAGTGAAGAATCGATT+GGG 0.440366 tig0020778:+130938 None:intergenic
AGGATAACTTCACCGCTGAT+TGG 0.444666 tig0020778:+128679 None:intergenic
AGAGAGTTGATAAGCAGGTT+AGG 0.447090 tig0020778:-129419 Msa1385940:CDS
ACGCAGATGAGGATTATTGC+AGG 0.447820 tig0020778:-130635 Msa1385940:CDS
TGATTCTGCTCGAAATAGTT+AGG 0.448814 tig0020778:+128637 None:intergenic
CGATGAGATGAGTGTGGGAT+AGG 0.448984 tig0020778:+130993 None:intergenic
TCAAGATCAAGGTGATTTGT+AGG 0.461063 tig0020778:+129671 None:intergenic
GTCGAGGTGGTGGAGCTTTG+AGG 0.461557 tig0020778:+131060 None:intergenic
CGTTTCGTCTGGTGTGAAGT+TGG 0.462519 tig0020778:-130768 Msa1385940:CDS
AGATTGGATGTGTCTTCAAT+TGG 0.463662 tig0020778:-130044 Msa1385940:CDS
TCTCTTCATGTATGGTGTAA+TGG 0.464376 tig0020778:+125599 None:intergenic
TCAGCGGTGAAGTTATCCTT+GGG 0.465273 tig0020778:-128675 Msa1385940:CDS
TGGAGAAGAATCTTGATGCC+AGG 0.465875 tig0020778:-125900 Msa1385940:CDS
TGTTGTAACAGTTAGGAACT+TGG 0.467480 tig0020778:-128916 Msa1385940:CDS
AGTTTCGTCCACGGCGGCTA+CGG 0.469289 tig0020778:+130886 None:intergenic
GAGCTAACTTTCTGCGGCTC+CGG 0.474544 tig0020778:+131205 None:intergenic
ATCAGCGGTGAAGTTATCCT+TGG 0.477715 tig0020778:-128676 Msa1385940:CDS
TTAGTTGGTGTAAATGGTGC+GGG 0.479604 tig0020778:-130665 Msa1385940:CDS
CTTTGTCGTCAAGCTCAGCC+TGG 0.480481 tig0020778:+125860 None:intergenic
ACATCCATTTGGACCAAGAA+TGG 0.482881 tig0020778:+128744 None:intergenic
GGAGCTTCAAGCGTTTCGTC+TGG 0.483696 tig0020778:-130779 Msa1385940:CDS
TTCCCAGTATATTCTTTCAA+AGG 0.484954 tig0020778:-129504 Msa1385940:CDS
AGACGAAACGCTTGAAGCTC+CGG 0.485415 tig0020778:+130781 None:intergenic
GAGGATTATTGCAGGTTTGG+AGG 0.486864 tig0020778:-130627 Msa1385940:CDS
TTTGCTTCAGAGACGAGCTC+AGG 0.488113 tig0020778:-130384 Msa1385940:CDS
ACGATATTAAAGGACTTCTT+GGG 0.489351 tig0020778:-128442 Msa1385940:CDS
CGCCTTTGAAAGAATATACT+GGG 0.490473 tig0020778:+129502 None:intergenic
AGTTAAAGATGGCACTGTGC+AGG 0.495959 tig0020778:-127113 Msa1385940:CDS
AGGCAAATCTTACAATTGAA+AGG 0.498825 tig0020778:-128780 Msa1385940:CDS
GAAGATCTGTTGTAACAGTT+AGG 0.500389 tig0020778:-128923 Msa1385940:CDS
GGGTGTATCCAGGACATTTG+AGG 0.501010 tig0020778:-129534 Msa1385940:CDS
ATATTCTTTCAAAGGCGACT+TGG 0.503007 tig0020778:-129496 Msa1385940:CDS
ATAATTTCCCTCAAATGTCC+TGG 0.504858 tig0020778:+129526 None:intergenic
TTGTATATATCATGTCTCAA+TGG 0.506183 tig0020778:-125505 Msa1385940:three_prime_UTR
CCGTGCTTCGACTGCTGAGA+AGG 0.506367 tig0020778:-129378 Msa1385940:intron
TGAGGCCAACTCCATTGTGT+TGG 0.508062 tig0020778:+131078 None:intergenic
GGATGAACCAACGAATCACT+TGG 0.511588 tig0020778:-127387 Msa1385940:CDS
GGTATATCCAAGTGATTCGT+TGG 0.512337 tig0020778:+127380 None:intergenic
CTTCCACTGCTTCCACGCAC+AGG 0.512959 tig0020778:+128942 None:intergenic
GTGAATGATTTGGAGTTGAT+GGG 0.513667 tig0020778:-130428 Msa1385940:CDS
TGAAGATTATCTTAACAAGC+AGG 0.517743 tig0020778:-129633 Msa1385940:CDS
ACTCAATTGTGTCAAGATCA+AGG 0.517929 tig0020778:+129660 None:intergenic
GTGCAAAGAATTCAAAGAGA+TGG 0.519064 tig0020778:-125638 Msa1385940:CDS
GGCACTGTGCAGGATTATGC+TGG 0.519823 tig0020778:-127103 Msa1385940:CDS
TGTCAGTGTCGAGTCTGTAT+TGG 0.521180 tig0020778:-130067 Msa1385940:intron
ATCGTCACTCCTCCAGTCCT+CGG 0.521542 tig0020778:+128460 None:intergenic
GTTGCTTACTCGTATTTCAT+GGG 0.521814 tig0020778:+125293 None:intergenic
CAAAGAGGAAATGGAGGTTG+CGG 0.522263 tig0020778:-130489 Msa1385940:CDS
GTCGAGTCTGTATTGGAGAT+TGG 0.525135 tig0020778:-130060 Msa1385940:CDS
TGAATGCTCCGGTGAGGTCG+AGG 0.525529 tig0020778:+131044 None:intergenic
TAGATTTATTCACCAAATGA+GGG 0.529000 tig0020778:-125569 Msa1385940:three_prime_UTR
GGTGTATCCAGGACATTTGA+GGG 0.529834 tig0020778:-129533 Msa1385940:CDS
CAAGCAAAACAGAAGTCTAA+AGG 0.530649 tig0020778:-125660 Msa1385940:CDS
TTCCCTGTGCGTGGAAGCAG+TGG 0.531912 tig0020778:-128945 Msa1385940:CDS
TCGTTCATCGACTGAAGTAT+CGG 0.532089 tig0020778:+130829 None:intergenic
AGTAAGTTGATGCCTGAGCT+TGG 0.532687 tig0020778:-130329 Msa1385940:CDS
TGTAGAGGATTCCGATAGGT+TGG 0.537166 tig0020778:-130300 Msa1385940:CDS
AGCACGGCCAGAACTTGCTC+CGG 0.538120 tig0020778:+129394 None:intergenic
AATTTGAGGTTTCGCCGAGT+AGG 0.539440 tig0020778:-130541 Msa1385940:CDS
AAAGTGCAGAAGGCGCTTGA+GGG 0.540064 tig0020778:-130455 Msa1385940:CDS
TGAGACATGATATATACAAA+AGG 0.541276 tig0020778:+125509 None:intergenic
AAACTGACATGGGTGTATCC+AGG 0.548307 tig0020778:-129544 Msa1385940:CDS
ATCATGAGATACGGTGATAA+CGG 0.548364 tig0020778:+127174 None:intergenic
CTCCACCACCTCGACCTCAC+CGG 0.548859 tig0020778:-131052 Msa1385940:CDS
GACAGTAGAGGAAGCTGCCG+AGG 0.548939 tig0020778:-128477 Msa1385940:CDS
TCTATTGAGTGGTGGTGAGA+AGG 0.550123 tig0020778:-128378 Msa1385940:intron
GAAAGTGCAGAAGGCGCTTG+AGG 0.550395 tig0020778:-130456 Msa1385940:CDS
AGGAAGCTGCCGAGGACTGG+AGG 0.551231 tig0020778:-128469 Msa1385940:CDS
TGTGGGATAGGGTGCGTGGA+AGG 0.551650 tig0020778:+131005 None:intergenic
TTGATAAGCAGGTTAGGTGC+CGG 0.551653 tig0020778:-129413 Msa1385940:CDS
AAGGAAGAAGCAAAAGATGC+AGG 0.553204 tig0020778:-125691 Msa1385940:CDS
TGAGGTTTCGCCGAGTAGGA+CGG 0.553445 tig0020778:-130537 Msa1385940:CDS
AGAGTGATTGAAGTTAAAGA+TGG 0.555267 tig0020778:-127124 Msa1385940:CDS
TGAAACACAGTATGCTGCAT+GGG 0.558064 tig0020778:-129471 Msa1385940:CDS
GGAGAAGAATCTTGATGCCA+GGG 0.558623 tig0020778:-125899 Msa1385940:CDS
AAACAAGAGAGTTGATAAGC+AGG 0.561228 tig0020778:-129424 Msa1385940:CDS
TTACAGTCTCAACAACAACT+TGG 0.561617 tig0020778:-125410 Msa1385940:three_prime_UTR
GTTTGGCGATGAGATGAGTG+TGG 0.563673 tig0020778:+130987 None:intergenic
CGGGAAAGACGACGCAGATG+AGG 0.567288 tig0020778:-130646 Msa1385940:CDS
AAAAGAAGCAACCAACCTAT+CGG 0.568234 tig0020778:+130289 None:intergenic
GTTTATGAGTGCTTTCAAAG+AGG 0.568928 tig0020778:-130504 Msa1385940:CDS
ACCATCCAACACAATGGAGT+TGG 0.573181 tig0020778:-131083 Msa1385940:exon
TCATGTATGGTGTAATGGAA+TGG 0.574779 tig0020778:+125604 None:intergenic
AAAATCAGGTTCCCTGTGCG+TGG 0.579340 tig0020778:-128954 Msa1385940:CDS
TCTACACCAAAACCAAGCTC+AGG 0.581292 tig0020778:+130317 None:intergenic
TTGAAGTGAAGAATCGATTG+GGG 0.582917 tig0020778:+130939 None:intergenic
TTCGTCCACGGCGGCTACGG+CGG 0.583554 tig0020778:+130889 None:intergenic
TGCTTTCAAAGAGGAAATGG+AGG 0.585578 tig0020778:-130495 Msa1385940:CDS
TATGTGTGTCACAAAACGAC+TGG 0.586311 tig0020778:+125257 None:intergenic
GCCAACTCCATTGTGTTGGA+TGG 0.587612 tig0020778:+131082 None:intergenic
TTGAGACTGTAAACTTCACC+AGG 0.588650 tig0020778:+125421 None:intergenic
TTCCACTGCTTCCACGCACA+GGG 0.589830 tig0020778:+128943 None:intergenic
CGTAAAGTTTCTCTATTGAG+TGG 0.590268 tig0020778:-128389 Msa1385940:CDS
TTGATCTTGACACAATTGAG+TGG 0.591241 tig0020778:-129658 Msa1385940:CDS
AGCTACTGAAGTTTCGTCCA+CGG 0.592252 tig0020778:+130877 None:intergenic
GGCACTTGATCTGGAAAAGA+CGG 0.593050 tig0020778:-128507 Msa1385940:CDS
AACAATAAACAATCTAACAC+CGG 0.593481 tig0020778:-130800 Msa1385940:CDS
TTTAGTTGGTGTAAATGGTG+CGG 0.595148 tig0020778:-130666 Msa1385940:CDS
CCTTCTCAGCAGTCGAAGCA+CGG 0.596601 tig0020778:+129378 None:intergenic
GATTTATTCACCAAATGAGG+GGG 0.599202 tig0020778:-125567 Msa1385940:three_prime_UTR
GAAATTGGAGAAAGTGCAGA+AGG 0.599509 tig0020778:-130465 Msa1385940:CDS
TGAATCGAGAATGAATGCTC+CGG 0.603746 tig0020778:+131033 None:intergenic
GATGAGATGAGTGTGGGATA+GGG 0.605531 tig0020778:+130994 None:intergenic
CTTCAATTGGAAGTGTCTAG+TGG 0.605750 tig0020778:-130031 Msa1385940:CDS
AAAGTACCGATCATGAGATA+CGG 0.606013 tig0020778:+127165 None:intergenic
TCTTCCCTCACCGTCCTACT+CGG 0.608929 tig0020778:+130527 None:intergenic
AGCCAAATCCAAGATGTCAA+AGG 0.614850 tig0020778:-125824 Msa1385940:intron
GAAGTGTGAGGCAGAGAACG+AGG 0.618933 tig0020778:+131149 None:intergenic
ATGATTTGGAGTTGATGGGG+AGG 0.619037 tig0020778:-130424 Msa1385940:CDS
TTTATCCGCCGTAGCCGCCG+TGG 0.619187 tig0020778:-130894 Msa1385940:CDS
GCAAATCTTACAATTGAAAG+GGG 0.619588 tig0020778:-128778 Msa1385940:CDS
AGATTTATTCACCAAATGAG+GGG 0.619882 tig0020778:-125568 Msa1385940:three_prime_UTR
TCGTGAGAAATGATAACCAT+CGG 0.626896 tig0020778:+129605 None:intergenic
AAAGTTTCTCTATTGAGTGG+TGG 0.627890 tig0020778:-128386 Msa1385940:CDS
ATCAGGCTGAGAAAGAAGCA+AGG 0.628611 tig0020778:-125710 Msa1385940:intron
ATTCTTGGTCCAAATGGATG+TGG 0.633025 tig0020778:-128742 Msa1385940:CDS
TGAGTGTGGGATAGGGTGCG+TGG 0.633289 tig0020778:+131001 None:intergenic
TAACAAGCAGGATGTGCCGA+TGG 0.633293 tig0020778:-129621 Msa1385940:CDS
ATTGGAAAGACTTCTTGGAG+AGG 0.634177 tig0020778:-129012 Msa1385940:CDS
GCAATACATTATGCTCCCCA+AGG 0.635416 tig0020778:+128659 None:intergenic
GTTTGGAGGAACCGGATTCG+GGG 0.635581 tig0020778:-130613 Msa1385940:CDS
TGGCAGATGAGGATGTGTCT+TGG 0.636187 tig0020778:-130257 Msa1385940:CDS
TAGTAGAGAAGCCATTTGAA+CGG 0.638546 tig0020778:-128986 Msa1385940:CDS
TTCGCCGAGTAGGACGGTGA+GGG 0.642046 tig0020778:-130531 Msa1385940:CDS
CAATTGGAAGTGTCTAGTGG+TGG 0.645556 tig0020778:-130028 Msa1385940:CDS
GACGGTGCTTGAGACAGTAG+AGG 0.647160 tig0020778:-128489 Msa1385940:CDS
TTAGTGGTGGATGGCAGATG+AGG 0.647334 tig0020778:-130268 Msa1385940:CDS
TTTCGCCGAGTAGGACGGTG+AGG 0.648524 tig0020778:-130532 Msa1385940:CDS
TTTGGCGATGAGATGAGTGT+GGG 0.650568 tig0020778:+130988 None:intergenic
TTGGTGTAGAGGATTCCGAT+AGG 0.651148 tig0020778:-130304 Msa1385940:CDS
TGAATGATTTGGAGTTGATG+GGG 0.654862 tig0020778:-130427 Msa1385940:CDS
TTATCACCGTATCTCATGAT+CGG 0.661904 tig0020778:-127171 Msa1385940:CDS
CTTCTGACCATCCAACACAA+TGG 0.662279 tig0020778:-131089 Msa1385940:exon
ACCTTCTAAAGAAATGCTTG+AGG 0.662881 tig0020778:-127360 Msa1385940:intron
TTGAAACACAGTATGCTGCA+TGG 0.664460 tig0020778:-129472 Msa1385940:CDS
GGAGGCAATAAATGAGTACG+AGG 0.667247 tig0020778:-127200 Msa1385940:CDS
AAGAGGAAATGGAGGTTGCG+GGG 0.668229 tig0020778:-130487 Msa1385940:CDS
TGGTGGTATTGCAAATTGCA+TGG 0.677034 tig0020778:-130011 Msa1385940:intron
CGAGAATGAATGCTCCGGTG+AGG 0.684460 tig0020778:+131038 None:intergenic
CAGCGGTGAAGTTATCCTTG+GGG 0.685607 tig0020778:-128674 Msa1385940:CDS
GGTTTAGAGAAGCCAATCAG+CGG 0.693977 tig0020778:-128691 Msa1385940:CDS
TGGATGGTCAGAAGATTGTG+TGG 0.709613 tig0020778:+131098 None:intergenic
ATGCTCCGGTGAGGTCGAGG+TGG 0.714725 tig0020778:+131047 None:intergenic
AAAATTGTGGAAACTGACAT+GGG 0.723967 tig0020778:-129554 Msa1385940:CDS
AAACACATTAGCATCCGCTG+TGG 0.734759 tig0020778:-125336 Msa1385940:three_prime_UTR
ATACGAGTAAGCAACTGACG+TGG 0.746420 tig0020778:-125285 Msa1385940:three_prime_UTR
GAGGCAATAAATGAGTACGA+GGG 0.751118 tig0020778:-127199 Msa1385940:CDS
TACTGAAGTTTCGTCCACGG+CGG 0.754126 tig0020778:+130880 None:intergenic
ATGGTCAGAAGATTGTGTGG+CGG 0.755785 tig0020778:+131101 None:intergenic
ACTTCAGTCGATGAACGACG+CGG 0.772804 tig0020778:-130824 Msa1385940:CDS
AAATAGCATTAAGACCACAG+CGG 0.779665 tig0020778:+125322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTTATCATTTAAAAATAA+CGG + tig0020778:126567-126586 None:intergenic 10.0%
!! TTTAAATGATAAATCAATAA+AGG - tig0020778:126572-126591 Msa1385940:intron 10.0%
!! TTAAATGATAAATCAATAAA+GGG - tig0020778:126573-126592 Msa1385940:intron 10.0%
!!! AAACATTAATTTTTACAATA+CGG + tig0020778:127357-127376 None:intergenic 10.0%
!! TCAAAAAAAAAGAAAATATT+AGG + tig0020778:129176-129195 None:intergenic 10.0%
!! AATTATAAATCAATATTAGT+CGG + tig0020778:129222-129241 None:intergenic 10.0%
!!! TTTTTTTTACTAAAATTAAG+GGG - tig0020778:130142-130161 Msa1385940:intron 10.0%
!! AATATTAGAAAAACTTACAA+AGG - tig0020778:125708-125727 Msa1385940:CDS 15.0%
!! AAAAAGAATACAAATGATTA+TGG - tig0020778:126511-126530 Msa1385940:intron 15.0%
!! TATTTAAGTGACTAATATTA+AGG + tig0020778:127274-127293 None:intergenic 15.0%
!!! TTCTTTTAAGTAAATAACAT+AGG + tig0020778:127392-127411 None:intergenic 15.0%
!! TACTTTACTAAAATTGATTA+TGG - tig0020778:127738-127757 Msa1385940:intron 15.0%
!! ACTTTACTAAAATTGATTAT+GGG - tig0020778:127739-127758 Msa1385940:intron 15.0%
!!! TTCTTAAATTTCTTTAAAGA+CGG + tig0020778:128382-128401 None:intergenic 15.0%
!! TTTAAAGAAATTTAAGAAAC+AGG - tig0020778:128384-128403 Msa1385940:CDS 15.0%
!!! TAAATGTATTTGACAATTTT+GGG - tig0020778:128490-128509 Msa1385940:CDS 15.0%
!! ATGATTTATTCCTAATAAAA+AGG - tig0020778:128603-128622 Msa1385940:intron 15.0%
!! TGATTTATTCCTAATAAAAA+GGG - tig0020778:128604-128623 Msa1385940:intron 15.0%
!! AGTATATTTAAACAATCTAT+GGG + tig0020778:129429-129448 None:intergenic 15.0%
!! AAGTATATTTAAACAATCTA+TGG + tig0020778:129430-129449 None:intergenic 15.0%
!! ATATTCATTATATACAAAAC+TGG + tig0020778:130445-130464 None:intergenic 15.0%
!!! ATTGATTTATTTGAAAAATC+AGG - tig0020778:130724-130743 Msa1385940:CDS 15.0%
!!! AAAAACGCAATTTTCATATT+TGG + tig0020778:125882-125901 None:intergenic 20.0%
!! AATGATTATGGTTAGTAATT+AGG - tig0020778:126523-126542 Msa1385940:intron 20.0%
!!! TATCATTTAAAAATAACGGA+CGG + tig0020778:126563-126582 None:intergenic 20.0%
!! ATTGCAATTTACAACTATTT+CGG + tig0020778:127326-127345 None:intergenic 20.0%
!!! ATTAATTTTTACAATACGGA+AGG + tig0020778:127353-127372 None:intergenic 20.0%
!!! AAAGTTTTGAAATGAAGAAT+TGG + tig0020778:127885-127904 None:intergenic 20.0%
!!! AAAGATTTTCAAAATGTCTA+AGG + tig0020778:128304-128323 None:intergenic 20.0%
!!! GTAAATGTATTTGACAATTT+TGG - tig0020778:128489-128508 Msa1385940:CDS 20.0%
!! TGAACATTAAATACAGATAA+AGG + tig0020778:129139-129158 None:intergenic 20.0%
!! AAATTAAAACAGAATACATC+AGG + tig0020778:129795-129814 None:intergenic 20.0%
!!! TGATGTATTCTGTTTTAATT+TGG - tig0020778:129794-129813 Msa1385940:intron 20.0%
!!! CCATATTTTACTTTTTGAAA+GGG + tig0020778:129907-129926 None:intergenic 20.0%
!!! TCCATATTTTACTTTTTGAA+AGG + tig0020778:129908-129927 None:intergenic 20.0%
!! TAAATTATACCCTCAAAATT+AGG + tig0020778:130326-130345 None:intergenic 20.0%
!! TTGAATCATTCAATGAAAAA+TGG + tig0020778:130385-130404 None:intergenic 20.0%
!! CATGTTTGTTTATTGTTATA+GGG - tig0020778:130488-130507 Msa1385940:CDS 20.0%
!! TGAAAATTTGCAGTATTATT+TGG - tig0020778:130531-130550 Msa1385940:CDS 20.0%
! AACAATAAACAATCTAACAC+CGG - tig0020778:125651-125670 Msa1385940:CDS 25.0%
! AGTATATTGTGTATGTGTAT+AGG - tig0020778:126260-126279 Msa1385940:intron 25.0%
! AATCTAGTTGTTGTCTAAAA+GGG + tig0020778:126478-126497 None:intergenic 25.0%
! AAATCTAGTTGTTGTCTAAA+AGG + tig0020778:126479-126498 None:intergenic 25.0%
!!! ATCATTTAAAAATAACGGAC+GGG + tig0020778:126562-126581 None:intergenic 25.0%
! TCAACTATGTACAAAAATTG+TGG - tig0020778:126884-126903 Msa1385940:intron 25.0%
!!! AGTCAAAAGTACTCATTAAA+TGG - tig0020778:127152-127171 Msa1385940:CDS 25.0%
!!! GTCAAAAGTACTCATTAAAT+GGG - tig0020778:127153-127172 Msa1385940:CDS 25.0%
!! ATCTCAATCCTTATGATTTT+GGG + tig0020778:127194-127213 None:intergenic 25.0%
!! AATCTCAATCCTTATGATTT+TGG + tig0020778:127195-127214 None:intergenic 25.0%
! TTATATATCTAGTGCTATGA+TGG - tig0020778:127222-127241 Msa1385940:intron 25.0%
! CTTAAACTTTGTTAGACATA+TGG + tig0020778:127248-127267 None:intergenic 25.0%
! ACTTAAATAACCCAAAAATG+CGG - tig0020778:127285-127304 Msa1385940:intron 25.0%
!!! AGCTTATTTCTATGATTGAA+TGG - tig0020778:128180-128199 Msa1385940:intron 25.0%
! TTAAGAAACAGGAACTAAAA+TGG - tig0020778:128395-128414 Msa1385940:CDS 25.0%
! TATATGCATTTAGTGAGAAA+GGG + tig0020778:128948-128967 None:intergenic 25.0%
! TTATATGCATTTAGTGAGAA+AGG + tig0020778:128949-128968 None:intergenic 25.0%
! CATATAATGCAACACTATTA+GGG - tig0020778:128962-128981 Msa1385940:CDS 25.0%
! ATATAATGCAACACTATTAG+GGG - tig0020778:128963-128982 Msa1385940:CDS 25.0%
!! ATATTGTTCCATGTTTTACT+AGG - tig0020778:128989-129008 Msa1385940:CDS 25.0%
! GGTAAGAAAAAAAAATGAGA+CGG + tig0020778:129118-129137 None:intergenic 25.0%
! AAAGAAAATATTAGGCTGAT+GGG + tig0020778:129168-129187 None:intergenic 25.0%
! AAAAGAAAATATTAGGCTGA+TGG + tig0020778:129169-129188 None:intergenic 25.0%
! TGATTTATAATTCTTCTACC+AGG - tig0020778:129230-129249 Msa1385940:intron 25.0%
! CATGTAATACTAATGATCAA+TGG + tig0020778:129525-129544 None:intergenic 25.0%
!!! GTATTACATGTGTTTTTTGT+TGG - tig0020778:129535-129554 Msa1385940:CDS 25.0%
! TTAAGAAAATTGAGGAATGA+GGG + tig0020778:129627-129646 None:intergenic 25.0%
! AATAAAGTGAAGAAATCTGA+GGG + tig0020778:129748-129767 None:intergenic 25.0%
! AAATAAAGTGAAGAAATCTG+AGG + tig0020778:129749-129768 None:intergenic 25.0%
! TCAGATTTCTTCACTTTATT+TGG - tig0020778:129748-129767 Msa1385940:intron 25.0%
!! CAGATTTCTTCACTTTATTT+GGG - tig0020778:129749-129768 Msa1385940:intron 25.0%
! ATGTAAAATTCCTATCACAA+AGG + tig0020778:129822-129841 None:intergenic 25.0%
!!! TTTTTTTTCAACAGCATATC+TGG - tig0020778:129857-129876 Msa1385940:intron 25.0%
! CCCTTTCAAAAAGTAAAATA+TGG - tig0020778:129904-129923 Msa1385940:intron 25.0%
! AAATAACTTAGACGATCAAA+AGG - tig0020778:130069-130088 Msa1385940:intron 25.0%
! TGAATGATTCAATAGACATA+TGG - tig0020778:130393-130412 Msa1385940:CDS 25.0%
! AACAATAAACAAACATGCAT+TGG + tig0020778:130485-130504 None:intergenic 25.0%
! GCATGTTTGTTTATTGTTAT+AGG - tig0020778:130487-130506 Msa1385940:CDS 25.0%
! AAAATTGTTCTCTTCATGTA+TGG + tig0020778:130863-130882 None:intergenic 25.0%
! TTAGATTTATTCACCAAATG+AGG - tig0020778:130881-130900 Msa1385940:CDS 25.0%
! TAGATTTATTCACCAAATGA+GGG - tig0020778:130882-130901 Msa1385940:CDS 25.0%
! TGAGACATGATATATACAAA+AGG + tig0020778:130945-130964 None:intergenic 25.0%
! TTGTATATATCATGTCTCAA+TGG - tig0020778:130946-130965 Msa1385940:CDS 25.0%
GAAAGTTAGCTCAAAAACAT+TGG - tig0020778:125257-125276 Msa1385940:three_prime_UTR 30.0%
! TTTGAAGTGAAGAATCGATT+GGG + tig0020778:125516-125535 None:intergenic 30.0%
!!! TTTTGAAGTGAAGAATCGAT+TGG + tig0020778:125517-125536 None:intergenic 30.0%
!! AAAAACTTACAAAGGTGTCA+CGG - tig0020778:125716-125735 Msa1385940:intron 30.0%
!!! GGTTTTGAAAGAGGTTAATT+GGG - tig0020778:125737-125756 Msa1385940:intron 30.0%
GTTAATTGGGAAGTGAAAAA+GGG - tig0020778:125750-125769 Msa1385940:intron 30.0%
! CAATTTTCTCAAATCAGTGT+CGG + tig0020778:126335-126354 None:intergenic 30.0%
!! ATAACCAATGTTACTTTGCA+AGG - tig0020778:126643-126662 Msa1385940:intron 30.0%
!!! GACACTTTGTTTTCAATTTC+AGG - tig0020778:126731-126750 Msa1385940:intron 30.0%
TCATCTAACAACAACAAATC+TGG + tig0020778:126759-126778 None:intergenic 30.0%
TGAAGATTATCTTAACAAGC+AGG - tig0020778:126818-126837 Msa1385940:intron 30.0%
AAAAATTGTGGAAACTGACA+TGG - tig0020778:126896-126915 Msa1385940:intron 30.0%
AAAATTGTGGAAACTGACAT+GGG - tig0020778:126897-126916 Msa1385940:intron 30.0%
TTCCCAGTATATTCTTTCAA+AGG - tig0020778:126947-126966 Msa1385940:intron 30.0%
TCTGTTGTCACATATACATA+AGG + tig0020778:127418-127437 None:intergenic 30.0%
GTATATGTGACAACAGAAAT+TGG - tig0020778:127421-127440 Msa1385940:CDS 30.0%
TTCATTTGTTTCCGTTCAAA+TGG + tig0020778:127479-127498 None:intergenic 30.0%
AACGGAAACAAATGAAAATC+AGG - tig0020778:127483-127502 Msa1385940:intron 30.0%
AGGCAAATCTTACAATTGAA+AGG - tig0020778:127671-127690 Msa1385940:intron 30.0%
GGCAAATCTTACAATTGAAA+GGG - tig0020778:127672-127691 Msa1385940:intron 30.0%
GCAAATCTTACAATTGAAAG+GGG - tig0020778:127673-127692 Msa1385940:intron 30.0%
TTGACTGAGAAAATGCTATT+TGG - tig0020778:127848-127867 Msa1385940:intron 30.0%
ACGATATTAAAGGACTTCTT+GGG - tig0020778:128009-128028 Msa1385940:intron 30.0%
! AGCAATATCATCTAATTTGC+GGG + tig0020778:128273-128292 None:intergenic 30.0%
CAGCAATATCATCTAATTTG+CGG + tig0020778:128274-128293 None:intergenic 30.0%
AACAAACAACCACATTTCAA+AGG + tig0020778:128335-128354 None:intergenic 30.0%
!! GATTCTTCTTCAACTTGTTT+TGG - tig0020778:128467-128486 Msa1385940:CDS 30.0%
TCCTAATAAAAAGGGAAATG+TGG - tig0020778:128612-128631 Msa1385940:intron 30.0%
! ACCACATTTCCCTTTTTATT+AGG + tig0020778:128616-128635 None:intergenic 30.0%
AAACTATTTACATGCTTCCA+TGG - tig0020778:128873-128892 Msa1385940:intron 30.0%
GCATATAATGCAACACTATT+AGG - tig0020778:128961-128980 Msa1385940:CDS 30.0%
TTTATAATTCTTCTACCAGG+AGG - tig0020778:129233-129252 Msa1385940:intron 30.0%
AGAGTGATTGAAGTTAAAGA+TGG - tig0020778:129327-129346 Msa1385940:intron 30.0%
!!! TGTGTTTTTTGTTGGATTCT+TGG - tig0020778:129543-129562 Msa1385940:CDS 30.0%
AATCATCATTTGCATCTAGA+TGG + tig0020778:129589-129608 None:intergenic 30.0%
! CTAGATGCAAATGATGATTT+TGG - tig0020778:129590-129609 Msa1385940:CDS 30.0%
GTTAAGAAAATTGAGGAATG+AGG + tig0020778:129628-129647 None:intergenic 30.0%
AAAACAGAATACATCAGGTA+GGG + tig0020778:129790-129809 None:intergenic 30.0%
TAAAACAGAATACATCAGGT+AGG + tig0020778:129791-129810 None:intergenic 30.0%
! TAATTTGGTTCCTTTGTGAT+AGG - tig0020778:129809-129828 Msa1385940:intron 30.0%
TCAGTCTTTCATTTCATAAG+TGG - tig0020778:129973-129992 Msa1385940:intron 30.0%
TCTTTCATTTCATAAGTGGA+AGG - tig0020778:129977-129996 Msa1385940:intron 30.0%
TTTCATAAGTGGAAGGATAT+AGG - tig0020778:129984-130003 Msa1385940:intron 30.0%
CATTCAATGAAAAATGGCTT+CGG + tig0020778:130379-130398 None:intergenic 30.0%
!! TTGGATTTGGCTTTCAATTT+AGG + tig0020778:130619-130638 None:intergenic 30.0%
AAACTTCTGTGAAACTCATA+TGG - tig0020778:130651-130670 Msa1385940:CDS 30.0%
AGATTTATTCACCAAATGAG+GGG - tig0020778:130883-130902 Msa1385940:CDS 30.0%
ATTATAGCATTTGTGATTCC+TGG - tig0020778:131012-131031 Msa1385940:CDS 30.0%
!! GTTTTTGAGCTAACTTTCTG+CGG + tig0020778:125255-125274 None:intergenic 35.0%
AGTTAGCTCAAAAACATTGG+TGG - tig0020778:125260-125279 Msa1385940:three_prime_UTR 35.0%
GTTAGCTCAAAAACATTGGT+GGG - tig0020778:125261-125280 Msa1385940:three_prime_UTR 35.0%
TTAGCTCAAAAACATTGGTG+GGG - tig0020778:125262-125281 Msa1385940:three_prime_UTR 35.0%
!!! TTATGGAAGAGTGTTTTACC+CGG + tig0020778:125330-125349 None:intergenic 35.0%
TTGAAGTGAAGAATCGATTG+GGG + tig0020778:125515-125534 None:intergenic 35.0%
!!! CGGTTTTGAAAGAGGTTAAT+TGG - tig0020778:125736-125755 Msa1385940:intron 35.0%
GGTTAATTGGGAAGTGAAAA+AGG - tig0020778:125749-125768 Msa1385940:intron 35.0%
! TTTAGTTGGTGTAAATGGTG+CGG - tig0020778:125785-125804 Msa1385940:intron 35.0%
!!! GAAAATTGCGTTTTTGAGTC+AGG - tig0020778:125887-125906 Msa1385940:CDS 35.0%
!!! GTTTTTGAGTCAGGAATTTG+AGG - tig0020778:125896-125915 Msa1385940:CDS 35.0%
GTTTATGAGTGCTTTCAAAG+AGG - tig0020778:125947-125966 Msa1385940:intron 35.0%
! TGTGAATGATTTGGAGTTGA+TGG - tig0020778:126022-126041 Msa1385940:intron 35.0%
! GTGAATGATTTGGAGTTGAT+GGG - tig0020778:126023-126042 Msa1385940:intron 35.0%
!! TGAATGATTTGGAGTTGATG+GGG - tig0020778:126024-126043 Msa1385940:intron 35.0%
AAAAGAAGCAACCAACCTAT+CGG + tig0020778:126165-126184 None:intergenic 35.0%
AGATTGGATGTGTCTTCAAT+TGG - tig0020778:126407-126426 Msa1385940:intron 35.0%
TATATCAGCATTACAGCCTA+TGG + tig0020778:126626-126645 None:intergenic 35.0%
TACACCTTGCAAAGTAACAT+TGG + tig0020778:126650-126669 None:intergenic 35.0%
! GAGTTTGAATGTGAAAGTGT+TGG - tig0020778:126698-126717 Msa1385940:intron 35.0%
! TCAAGATCAAGGTGATTTGT+AGG + tig0020778:126783-126802 None:intergenic 35.0%
ACTCAATTGTGTCAAGATCA+AGG + tig0020778:126794-126813 None:intergenic 35.0%
TTGATCTTGACACAATTGAG+TGG - tig0020778:126793-126812 Msa1385940:intron 35.0%
TCGTGAGAAATGATAACCAT+CGG + tig0020778:126849-126868 None:intergenic 35.0%
ATAATTTCCCTCAAATGTCC+TGG + tig0020778:126928-126947 None:intergenic 35.0%
! CGCCTTTGAAAGAATATACT+GGG + tig0020778:126952-126971 None:intergenic 35.0%
! TCGCCTTTGAAAGAATATAC+TGG + tig0020778:126953-126972 None:intergenic 35.0%
ATATTCTTTCAAAGGCGACT+TGG - tig0020778:126955-126974 Msa1385940:intron 35.0%
!! AAACAAGAGAGTTGATAAGC+AGG - tig0020778:127027-127046 Msa1385940:intron 35.0%
!! CCTTATGATTTTGGGAGAAT+TGG + tig0020778:127186-127205 None:intergenic 35.0%
CCAATTCTCCCAAAATCATA+AGG - tig0020778:127183-127202 Msa1385940:CDS 35.0%
! AACACTACTACCGCATTTTT+GGG + tig0020778:127298-127317 None:intergenic 35.0%
CAGAAATTGGAAAGACTTCT+TGG - tig0020778:127434-127453 Msa1385940:CDS 35.0%
TAGTAGAGAAGCCATTTGAA+CGG - tig0020778:127465-127484 Msa1385940:intron 35.0%
GAAGATCTGTTGTAACAGTT+AGG - tig0020778:127528-127547 Msa1385940:intron 35.0%
TGTTGTAACAGTTAGGAACT+TGG - tig0020778:127535-127554 Msa1385940:intron 35.0%
! ACAGTTAGGAACTTGGATTT+TGG - tig0020778:127542-127561 Msa1385940:intron 35.0%
! TTGCCTTGTTGAAAAGTTTC+TGG + tig0020778:127657-127676 None:intergenic 35.0%
GGAGAAAAAATTGCCATTCT+TGG - tig0020778:127694-127713 Msa1385940:intron 35.0%
TGATTCTGCTCGAAATAGTT+AGG + tig0020778:127817-127836 None:intergenic 35.0%
TAACTATTTCGAGCAGAATC+AGG - tig0020778:127816-127835 Msa1385940:intron 35.0%
!! AAAATGCTATTTGGTGCCAT+CGG - tig0020778:127857-127876 Msa1385940:intron 35.0%
AAATGAAGAATTGGAACCGA+TGG + tig0020778:127876-127895 None:intergenic 35.0%
GACGATATTAAAGGACTTCT+TGG - tig0020778:128008-128027 Msa1385940:intron 35.0%
CGTAAAGTTTCTCTATTGAG+TGG - tig0020778:128062-128081 Msa1385940:intron 35.0%
AAAGTTTCTCTATTGAGTGG+TGG - tig0020778:128065-128084 Msa1385940:intron 35.0%
!!! TTTTGCTCTCCTTTGAAATG+TGG - tig0020778:128323-128342 Msa1385940:intron 35.0%
! ATGGCTATGATGATGTTAAG+AGG - tig0020778:128414-128433 Msa1385940:CDS 35.0%
! ACCATCAACTCTACTTGTTT+TGG - tig0020778:129043-129062 Msa1385940:intron 35.0%
TCCAAAACAAGTAGAGTTGA+TGG + tig0020778:129047-129066 None:intergenic 35.0%
! ACCTTCTAAAGAAATGCTTG+AGG - tig0020778:129091-129110 Msa1385940:intron 35.0%
ACCTCAAGCATTTCTTTAGA+AGG + tig0020778:129095-129114 None:intergenic 35.0%
AATCAATATTAGTCGGTCCT+TGG + tig0020778:129215-129234 None:intergenic 35.0%
ATCATGAGATACGGTGATAA+CGG + tig0020778:129280-129299 None:intergenic 35.0%
TTATCACCGTATCTCATGAT+CGG - tig0020778:129280-129299 Msa1385940:intron 35.0%
!! AAAGTACCGATCATGAGATA+CGG + tig0020778:129289-129308 None:intergenic 35.0%
ATGGGACACAAAAAAGCTAA+TGG + tig0020778:129411-129430 None:intergenic 35.0%
GCGGATAGTTAAGAAAATTG+AGG + tig0020778:129635-129654 None:intergenic 35.0%
TCAGGTAGGGACTAATAATT+TGG + tig0020778:129777-129796 None:intergenic 35.0%
TAATGAAGTGAACAGTCTTG+TGG - tig0020778:129932-129951 Msa1385940:intron 35.0%
!!! ACTTAGTTTTGACACTTGAG+AGG - tig0020778:130100-130119 Msa1385940:intron 35.0%
!!! CTTAGTTTTGACACTTGAGA+GGG - tig0020778:130101-130120 Msa1385940:intron 35.0%
! TTGCTATTAAGCTCTCTTAG+TGG - tig0020778:130172-130191 Msa1385940:intron 35.0%
GTTCATAATCTAAGTTGCAC+TGG - tig0020778:130261-130280 Msa1385940:CDS 35.0%
!! ATGTGTTCCATTTTTCGTCA+AGG - tig0020778:130286-130305 Msa1385940:CDS 35.0%
! ATGACGGTTACCTAATTTTG+AGG - tig0020778:130313-130332 Msa1385940:CDS 35.0%
! TGACGGTTACCTAATTTTGA+GGG - tig0020778:130314-130333 Msa1385940:CDS 35.0%
TCACGAAGTTACTATCAACA+TGG + tig0020778:130349-130368 None:intergenic 35.0%
TACCTTTGACATCTTGGATT+TGG + tig0020778:130632-130651 None:intergenic 35.0%
GAAGTTTACCTTTGACATCT+TGG + tig0020778:130638-130657 None:intergenic 35.0%
CAAGCAAAACAGAAGTCTAA+AGG - tig0020778:130791-130810 Msa1385940:CDS 35.0%
GTGCAAAGAATTCAAAGAGA+TGG - tig0020778:130813-130832 Msa1385940:CDS 35.0%
! TCATGTATGGTGTAATGGAA+TGG + tig0020778:130850-130869 None:intergenic 35.0%
TCTCTTCATGTATGGTGTAA+TGG + tig0020778:130855-130874 None:intergenic 35.0%
GATTTATTCACCAAATGAGG+GGG - tig0020778:130884-130903 Msa1385940:CDS 35.0%
TTACAGTCTCAACAACAACT+TGG - tig0020778:131041-131060 Msa1385940:CDS 35.0%
AAATAGCATTAAGACCACAG+CGG + tig0020778:131132-131151 None:intergenic 35.0%
GTTGCTTACTCGTATTTCAT+GGG + tig0020778:131161-131180 None:intergenic 35.0%
AGTTGCTTACTCGTATTTCA+TGG + tig0020778:131162-131181 None:intergenic 35.0%
TGAATCGAGAATGAATGCTC+CGG + tig0020778:125421-125440 None:intergenic 40.0%
!! GTGTTAGTGTTGAAGGTGTT+GGG + tig0020778:125489-125508 None:intergenic 40.0%
! AGTGTTAGTGTTGAAGGTGT+TGG + tig0020778:125490-125509 None:intergenic 40.0%
! TCGTTCATCGACTGAAGTAT+CGG + tig0020778:125625-125644 None:intergenic 40.0%
AGTGAAAAAGGGTGAGAAAG+TGG - tig0020778:125761-125780 Msa1385940:intron 40.0%
GTGAAAAAGGGTGAGAAAGT+GGG - tig0020778:125762-125781 Msa1385940:intron 40.0%
! GTGGGTTTAGTTGGTGTAAA+TGG - tig0020778:125780-125799 Msa1385940:intron 40.0%
! TTAGTTGGTGTAAATGGTGC+GGG - tig0020778:125786-125805 Msa1385940:intron 40.0%
GATGAGGATTATTGCAGGTT+TGG - tig0020778:125821-125840 Msa1385940:intron 40.0%
TTAATCACATTCCCCGAATC+CGG + tig0020778:125852-125871 None:intergenic 40.0%
GAGTGCTTTCAAAGAGGAAA+TGG - tig0020778:125953-125972 Msa1385940:intron 40.0%
TGCTTTCAAAGAGGAAATGG+AGG - tig0020778:125956-125975 Msa1385940:intron 40.0%
! GAAATTGGAGAAAGTGCAGA+AGG - tig0020778:125986-126005 Msa1385940:intron 40.0%
TGAGGGTTCTGTGAATGATT+TGG - tig0020778:126013-126032 Msa1385940:intron 40.0%
!! AGGTTGGTTGCTTCTTTTAG+TGG - tig0020778:126167-126186 Msa1385940:intron 40.0%
! TTGGTTGCTTCTTTTAGTGG+TGG - tig0020778:126170-126189 Msa1385940:intron 40.0%
!! TTGCTTCTTTTAGTGGTGGA+TGG - tig0020778:126174-126193 Msa1385940:intron 40.0%
! TCTTGGCAAGATTTTGCTTC+AGG - tig0020778:126211-126230 Msa1385940:intron 40.0%
CAACATGTTAGTGTCGTGAT+CGG + tig0020778:126309-126328 None:intergenic 40.0%
!! CTTCAATTGGAAGTGTCTAG+TGG - tig0020778:126420-126439 Msa1385940:intron 40.0%
TGGTGGTATTGCAAATTGCA+TGG - tig0020778:126440-126459 Msa1385940:intron 40.0%
! ATCAATAAAGGGCACACCTT+AGG - tig0020778:126584-126603 Msa1385940:intron 40.0%
TACAGCCTATGGTTAACCAT+AGG + tig0020778:126615-126634 None:intergenic 40.0%
TTGAAACACAGTATGCTGCA+TGG - tig0020778:126979-126998 Msa1385940:intron 40.0%
TGAAACACAGTATGCTGCAT+GGG - tig0020778:126980-126999 Msa1385940:intron 40.0%
!! AGAGAGTTGATAAGCAGGTT+AGG - tig0020778:127032-127051 Msa1385940:intron 40.0%
! CAACACTACTACCGCATTTT+TGG + tig0020778:127299-127318 None:intergenic 40.0%
ATTGGAAAGACTTCTTGGAG+AGG - tig0020778:127439-127458 Msa1385940:CDS 40.0%
!!! GAACTTGGATTTTGGCTTTG+AGG - tig0020778:127550-127569 Msa1385940:intron 40.0%
! GTGCCAGAAACTTTTCAACA+AGG - tig0020778:127651-127670 Msa1385940:intron 40.0%
ATTGCCATTCTTGGTCCAAA+TGG - tig0020778:127703-127722 Msa1385940:intron 40.0%
ACATCCATTTGGACCAAGAA+TGG + tig0020778:127710-127729 None:intergenic 40.0%
ATTCTTGGTCCAAATGGATG+TGG - tig0020778:127709-127728 Msa1385940:intron 40.0%
!! GCTGACTTGATTTAGTCAAC+AGG - tig0020778:127917-127936 Msa1385940:intron 40.0%
TTGATTTAGTCAACAGGCTG+AGG - tig0020778:127923-127942 Msa1385940:intron 40.0%
TGGAGGAGTGACGATATTAA+AGG - tig0020778:127999-128018 Msa1385940:intron 40.0%
ATCAACCATCTCAATGTTCG+AGG + tig0020778:128450-128469 None:intergenic 40.0%
ATCCATACACCTGCATTCTT+TGG - tig0020778:128517-128536 Msa1385940:intron 40.0%
TCCATACACCTGCATTCTTT+GGG - tig0020778:128518-128537 Msa1385940:intron 40.0%
ATGAAATGCCCAAAGAATGC+AGG + tig0020778:128529-128548 None:intergenic 40.0%
!! AAGGGAAATGTGGTGCTATT+AGG - tig0020778:128622-128641 Msa1385940:intron 40.0%
AGAGATGAGAGGTAAAACAG+AGG + tig0020778:128701-128720 None:intergenic 40.0%
TATAGAGAGAGAGAGAGAGA+GGG + tig0020778:128746-128765 None:intergenic 40.0%
ATATAGAGAGAGAGAGAGAG+AGG + tig0020778:128747-128766 None:intergenic 40.0%
! GTTCCATGTTTTACTAGGCA+CGG - tig0020778:128994-129013 Msa1385940:CDS 40.0%
!!! GCTGGCTTTTTGCAAATTCA+TGG - tig0020778:129016-129035 Msa1385940:CDS 40.0%
GGTATATCCAAGTGATTCGT+TGG + tig0020778:129074-129093 None:intergenic 40.0%
AAAACTCTGTATCCGATCCA+AGG - tig0020778:129195-129214 Msa1385940:intron 40.0%
ATATTAGTCGGTCCTTGGAT+CGG + tig0020778:129210-129229 None:intergenic 40.0%
GAGGCAATAAATGAGTACGA+GGG - tig0020778:129252-129271 Msa1385940:intron 40.0%
ACACAAAAAAGCTAATGGCG+GGG + tig0020778:129406-129425 None:intergenic 40.0%
GACACAAAAAAGCTAATGGC+GGG + tig0020778:129407-129426 None:intergenic 40.0%
GGACACAAAAAAGCTAATGG+CGG + tig0020778:129408-129427 None:intergenic 40.0%
GATTCAGAGATAGTTGAAGC+AGG - tig0020778:129459-129478 Msa1385940:CDS 40.0%
GATAGTTGAAGCAGGTTAAC+TGG - tig0020778:129467-129486 Msa1385940:CDS 40.0%
ATGAACAAGATCGCCAAGAA+GGG + tig0020778:129664-129683 None:intergenic 40.0%
TATTAAGCTCTCTTAGTGGC+AGG - tig0020778:130176-130195 Msa1385940:intron 40.0%
CATACAGCCTTGACGAAAAA+TGG + tig0020778:130296-130315 None:intergenic 40.0%
! TTTTCGTCAAGGCTGTATGA+CGG - tig0020778:130297-130316 Msa1385940:CDS 40.0%
! AGACATATGGTGATGCTGTA+AGG - tig0020778:130406-130425 Msa1385940:CDS 40.0%
! GACATATGGTGATGCTGTAA+GGG - tig0020778:130407-130426 Msa1385940:CDS 40.0%
AGCCAAATCCAAGATGTCAA+AGG - tig0020778:130627-130646 Msa1385940:CDS 40.0%
CTGTGAAACTCATATGGATG+AGG - tig0020778:130657-130676 Msa1385940:CDS 40.0%
AAGGAAGAAGCAAAAGATGC+AGG - tig0020778:130760-130779 Msa1385940:CDS 40.0%
!! CTTCTGTTTTGCTTGCTGAA+AGG + tig0020778:130786-130805 None:intergenic 40.0%
TTGAGACTGTAAACTTCACC+AGG + tig0020778:131033-131052 None:intergenic 40.0%
TATGTGTGTCACAAAACGAC+TGG + tig0020778:131197-131216 None:intergenic 40.0%
!! TTTTACCCGGAAGAAGTGTG+AGG + tig0020778:125317-125336 None:intergenic 45.0%
AGAAGATTGTGTGGCGGTTA+TGG + tig0020778:125347-125366 None:intergenic 45.0%
ATGGTCAGAAGATTGTGTGG+CGG + tig0020778:125353-125372 None:intergenic 45.0%
TGGATGGTCAGAAGATTGTG+TGG + tig0020778:125356-125375 None:intergenic 45.0%
CTTCTGACCATCCAACACAA+TGG - tig0020778:125362-125381 Msa1385940:three_prime_UTR 45.0%
ACCATCCAACACAATGGAGT+TGG - tig0020778:125368-125387 Msa1385940:three_prime_UTR 45.0%
GATGAGATGAGTGTGGGATA+GGG + tig0020778:125460-125479 None:intergenic 45.0%
TTTGGCGATGAGATGAGTGT+GGG + tig0020778:125466-125485 None:intergenic 45.0%
!! AGTGTTGAAGGTGTTGGGTT+TGG + tig0020778:125484-125503 None:intergenic 45.0%
! GGGGTTAGTGTTAGTGTTGA+AGG + tig0020778:125496-125515 None:intergenic 45.0%
AGCTACTGAAGTTTCGTCCA+CGG + tig0020778:125577-125596 None:intergenic 45.0%
!!! AGGTGTCACGGTTTTGAAAG+AGG - tig0020778:125728-125747 Msa1385940:intron 45.0%
! GGTGAGAAAGTGGGTTTAGT+TGG - tig0020778:125771-125790 Msa1385940:intron 45.0%
ACGCAGATGAGGATTATTGC+AGG - tig0020778:125816-125835 Msa1385940:intron 45.0%
GAGGATTATTGCAGGTTTGG+AGG - tig0020778:125824-125843 Msa1385940:intron 45.0%
TATTGCAGGTTTGGAGGAAC+CGG - tig0020778:125830-125849 Msa1385940:CDS 45.0%
! AATTTGAGGTTTCGCCGAGT+AGG - tig0020778:125910-125929 Msa1385940:CDS 45.0%
CAAAGAGGAAATGGAGGTTG+CGG - tig0020778:125962-125981 Msa1385940:intron 45.0%
AAAGAGGAAATGGAGGTTGC+GGG - tig0020778:125963-125982 Msa1385940:intron 45.0%
!! ATGATTTGGAGTTGATGGGG+AGG - tig0020778:126027-126046 Msa1385940:intron 45.0%
!! AGTAAGTTGATGCCTGAGCT+TGG - tig0020778:126122-126141 Msa1385940:intron 45.0%
! TTGATGCCTGAGCTTGGTTT+TGG - tig0020778:126128-126147 Msa1385940:intron 45.0%
TCTACACCAAAACCAAGCTC+AGG + tig0020778:126137-126156 None:intergenic 45.0%
!!! TGAGCTTGGTTTTGGTGTAG+AGG - tig0020778:126136-126155 Msa1385940:intron 45.0%
TTGGTGTAGAGGATTCCGAT+AGG - tig0020778:126147-126166 Msa1385940:intron 45.0%
TGTAGAGGATTCCGATAGGT+TGG - tig0020778:126151-126170 Msa1385940:intron 45.0%
! TGTCAGTGTCGAGTCTGTAT+TGG - tig0020778:126384-126403 Msa1385940:intron 45.0%
GTCGAGTCTGTATTGGAGAT+TGG - tig0020778:126391-126410 Msa1385940:intron 45.0%
!! CAATTGGAAGTGTCTAGTGG+TGG - tig0020778:126423-126442 Msa1385940:intron 45.0%
TTAACCATAGGTGCAGCCTA+AGG + tig0020778:126603-126622 None:intergenic 45.0%
CTGCACCTATGGTTAACCAT+AGG - tig0020778:126607-126626 Msa1385940:intron 45.0%
AAACTGACATGGGTGTATCC+AGG - tig0020778:126907-126926 Msa1385940:intron 45.0%
GGTGTATCCAGGACATTTGA+GGG - tig0020778:126918-126937 Msa1385940:intron 45.0%
TTGATAAGCAGGTTAGGTGC+CGG - tig0020778:127038-127057 Msa1385940:intron 45.0%
! GACTGCTGAGAAGGTATATG+TGG - tig0020778:127082-127101 Msa1385940:intron 45.0%
GTACTCTTGCCACATCCATT+TGG + tig0020778:127721-127740 None:intergenic 45.0%
GGTTTAGAGAAGCCAATCAG+CGG - tig0020778:127760-127779 Msa1385940:intron 45.0%
AGGATAACTTCACCGCTGAT+TGG + tig0020778:127775-127794 None:intergenic 45.0%
ATCAGCGGTGAAGTTATCCT+TGG - tig0020778:127775-127794 Msa1385940:intron 45.0%
TCAGCGGTGAAGTTATCCTT+GGG - tig0020778:127776-127795 Msa1385940:intron 45.0%
GCAATACATTATGCTCCCCA+AGG + tig0020778:127795-127814 None:intergenic 45.0%
GGCACTTGATCTGGAAAAGA+CGG - tig0020778:127944-127963 Msa1385940:intron 45.0%
! TCTATTGAGTGGTGGTGAGA+AGG - tig0020778:128073-128092 Msa1385940:intron 45.0%
GCGGGTAAAGAAGCAATTCT+CGG + tig0020778:128255-128274 None:intergenic 45.0%
TCCAACCTCGAACATTGAGA+TGG - tig0020778:128442-128461 Msa1385940:CDS 45.0%
ACCATCTCAATGTTCGAGGT+TGG + tig0020778:128446-128465 None:intergenic 45.0%
! GTGCTATTAGGTTCTCACCA+TGG - tig0020778:128634-128653 Msa1385940:intron 45.0%
TATTAGGTTCTCACCATGGC+AGG - tig0020778:128638-128657 Msa1385940:CDS 45.0%
ATTAGGTTCTCACCATGGCA+GGG - tig0020778:128639-128658 Msa1385940:CDS 45.0%
CATGCTTCCATGGTACTCTT+CGG - tig0020778:128883-128902 Msa1385940:intron 45.0%
!! GTTGTATCCGAAGAGTACCA+TGG + tig0020778:128893-128912 None:intergenic 45.0%
GGATGAACCAACGAATCACT+TGG - tig0020778:129064-129083 Msa1385940:intron 45.0%
CGTACTCATTTATTGCCTCC+TGG + tig0020778:129251-129270 None:intergenic 45.0%
GGAGGCAATAAATGAGTACG+AGG - tig0020778:129251-129270 Msa1385940:intron 45.0%
AGTTAAAGATGGCACTGTGC+AGG - tig0020778:129338-129357 Msa1385940:intron 45.0%
! AAAAAAGCTAATGGCGGGGA+GGG + tig0020778:129402-129421 None:intergenic 45.0%
TGAACAAGATCGCCAAGAAG+GGG + tig0020778:129663-129682 None:intergenic 45.0%
GATGAACAAGATCGCCAAGA+AGG + tig0020778:129665-129684 None:intergenic 45.0%
TGATAGCAAATACGCCTGTG+AGG - tig0020778:130033-130052 Msa1385940:CDS 45.0%
GATAGCAAATACGCCTGTGA+GGG - tig0020778:130034-130053 Msa1385940:CDS 45.0%
! TAGTCCTTTTGATCCCTCAC+AGG + tig0020778:130050-130069 None:intergenic 45.0%
GAGAGCTTAATAGCAACAGC+TGG + tig0020778:130168-130187 None:intergenic 45.0%
TCTCTTAGTGGCAGGATTCA+GGG - tig0020778:130184-130203 Msa1385940:intron 45.0%
TGGAGAAGAATCTTGATGCC+AGG - tig0020778:130551-130570 Msa1385940:CDS 45.0%
GGAGAAGAATCTTGATGCCA+GGG - tig0020778:130552-130571 Msa1385940:CDS 45.0%
ATCAGGCTGAGAAAGAAGCA+AGG - tig0020778:130741-130760 Msa1385940:CDS 45.0%
AAACACATTAGCATCCGCTG+TGG - tig0020778:131115-131134 Msa1385940:five_prime_UTR 45.0%
ATACGAGTAAGCAACTGACG+TGG - tig0020778:131166-131185 Msa1385940:five_prime_UTR 45.0%
!!! TTTTTTTTTTACTAAAATTA+AGG - tig0020778:130140-130159 Msa1385940:intron 5.0%
!!! TTTTTTTTTACTAAAATTAA+GGG - tig0020778:130141-130160 Msa1385940:intron 5.0%
TCTCTGCCTCACACTTCTTC+CGG - tig0020778:125308-125327 Msa1385940:three_prime_UTR 50.0%
GCCAACTCCATTGTGTTGGA+TGG + tig0020778:125372-125391 None:intergenic 50.0%
TGAGGCCAACTCCATTGTGT+TGG + tig0020778:125376-125395 None:intergenic 50.0%
CGATGAGATGAGTGTGGGAT+AGG + tig0020778:125461-125480 None:intergenic 50.0%
GTTTGGCGATGAGATGAGTG+TGG + tig0020778:125467-125486 None:intergenic 50.0%
TACTGAAGTTTCGTCCACGG+CGG + tig0020778:125574-125593 None:intergenic 50.0%
ACTTCAGTCGATGAACGACG+CGG - tig0020778:125627-125646 Msa1385940:exon 50.0%
AGACGAAACGCTTGAAGCTC+CGG + tig0020778:125673-125692 None:intergenic 50.0%
CGTTTCGTCTGGTGTGAAGT+TGG - tig0020778:125683-125702 Msa1385940:CDS 50.0%
AGGTTTGGAGGAACCGGATT+CGG - tig0020778:125836-125855 Msa1385940:CDS 50.0%
AAGAGGAAATGGAGGTTGCG+GGG - tig0020778:125964-125983 Msa1385940:intron 50.0%
AATGGAGGTTGCGGGGAAAT+TGG - tig0020778:125971-125990 Msa1385940:intron 50.0%
!! AAAGTGCAGAAGGCGCTTGA+GGG - tig0020778:125996-126015 Msa1385940:intron 50.0%
TTTGCTTCAGAGACGAGCTC+AGG - tig0020778:126067-126086 Msa1385940:intron 50.0%
ACGAGCTCAGGCTGTGAATT+TGG - tig0020778:126079-126098 Msa1385940:intron 50.0%
!! TTAGTGGTGGATGGCAGATG+AGG - tig0020778:126183-126202 Msa1385940:intron 50.0%
TGGCAGATGAGGATGTGTCT+TGG - tig0020778:126194-126213 Msa1385940:intron 50.0%
TAACAAGCAGGATGTGCCGA+TGG - tig0020778:126830-126849 Msa1385940:intron 50.0%
GGGTGTATCCAGGACATTTG+AGG - tig0020778:126917-126936 Msa1385940:intron 50.0%
AAAATCAGGTTCCCTGTGCG+TGG - tig0020778:127497-127516 Msa1385940:intron 50.0%
CAGCGGTGAAGTTATCCTTG+GGG - tig0020778:127777-127796 Msa1385940:intron 50.0%
GCCCAAAGAATGCAGGTGTA+TGG + tig0020778:128522-128541 None:intergenic 50.0%
TTCTCACCATGGCAGGGTTT+GGG - tig0020778:128645-128664 Msa1385940:CDS 50.0%
CAGCCGTGCCTAGTAAAACA+TGG + tig0020778:129000-129019 None:intergenic 50.0%
! CATGTTTTACTAGGCACGGC+TGG - tig0020778:128998-129017 Msa1385940:CDS 50.0%
! AAAAAGCTAATGGCGGGGAG+GGG + tig0020778:129401-129420 None:intergenic 50.0%
! CAAAAAAGCTAATGGCGGGG+AGG + tig0020778:129403-129422 None:intergenic 50.0%
GAACAAGATCGCCAAGAAGG+GGG + tig0020778:129662-129681 None:intergenic 50.0%
TACGCCTGTGAGGGATCAAA+AGG - tig0020778:130043-130062 Msa1385940:CDS 50.0%
CTCTCTTAGTGGCAGGATTC+AGG - tig0020778:130183-130202 Msa1385940:intron 50.0%
TTAGTGGCAGGATTCAGGGA+AGG - tig0020778:130188-130207 Msa1385940:intron 50.0%
TAGTGGCAGGATTCAGGGAA+GGG - tig0020778:130189-130208 Msa1385940:intron 50.0%
! GCGTTCAAGCTCTTTTTCCC+TGG + tig0020778:130572-130591 None:intergenic 50.0%
GGAAAAAGAGCTTGAACGCC+AGG - tig0020778:130573-130592 Msa1385940:CDS 50.0%
CACCAAATGAGGGGGATAGA+AGG - tig0020778:130892-130911 Msa1385940:CDS 50.0%
CACCTTCTATCCCCCTCATT+TGG + tig0020778:130897-130916 None:intergenic 50.0%
GAGCTAACTTTCTGCGGCTC+CGG + tig0020778:125249-125268 None:intergenic 55.0%
GAAGTGTGAGGCAGAGAACG+AGG + tig0020778:125305-125324 None:intergenic 55.0%
CTCTGCCTCACACTTCTTCC+GGG - tig0020778:125309-125328 Msa1385940:three_prime_UTR 55.0%
CGAGAATGAATGCTCCGGTG+AGG + tig0020778:125416-125435 None:intergenic 55.0%
GGAGCTTCAAGCGTTTCGTC+TGG - tig0020778:125672-125691 Msa1385940:CDS 55.0%
GGTTTGGAGGAACCGGATTC+GGG - tig0020778:125837-125856 Msa1385940:CDS 55.0%
GTTTGGAGGAACCGGATTCG+GGG - tig0020778:125838-125857 Msa1385940:CDS 55.0%
TGAGGTTTCGCCGAGTAGGA+CGG - tig0020778:125914-125933 Msa1385940:intron 55.0%
TCTTCCCTCACCGTCCTACT+CGG + tig0020778:125927-125946 None:intergenic 55.0%
!! GAAAGTGCAGAAGGCGCTTG+AGG - tig0020778:125995-126014 Msa1385940:intron 55.0%
!!! GGAGTTGATGGGGAGGCTTT+TGG - tig0020778:126034-126053 Msa1385940:intron 55.0%
CACACCTTAGGCTGCACCTA+TGG - tig0020778:126596-126615 Msa1385940:intron 55.0%
!! TTAGGTGCCGGAGCAAGTTC+TGG - tig0020778:127050-127069 Msa1385940:intron 55.0%
CCTTCTCAGCAGTCGAAGCA+CGG + tig0020778:127076-127095 None:intergenic 55.0%
TTCCACTGCTTCCACGCACA+GGG + tig0020778:127511-127530 None:intergenic 55.0%
! ACAGGCTGAGGCACTTGATC+TGG - tig0020778:127935-127954 Msa1385940:intron 55.0%
GACGGTGCTTGAGACAGTAG+AGG - tig0020778:127962-127981 Msa1385940:intron 55.0%
ATCGTCACTCCTCCAGTCCT+CGG + tig0020778:127994-128013 None:intergenic 55.0%
GTTCTCACCATGGCAGGGTT+TGG - tig0020778:128644-128663 Msa1385940:CDS 55.0%
TCTCACCATGGCAGGGTTTG+GGG - tig0020778:128646-128665 Msa1385940:CDS 55.0%
GAGGGAGAGAGAGAGATGAG+AGG + tig0020778:128712-128731 None:intergenic 55.0%
GAGAGGGAGAGAGAGAGAGA+GGG + tig0020778:128730-128749 None:intergenic 55.0%
AGAGAGGGAGAGAGAGAGAG+AGG + tig0020778:128731-128750 None:intergenic 55.0%
GGCACTGTGCAGGATTATGC+TGG - tig0020778:129348-129367 Msa1385940:intron 55.0%
! AAAAGCTAATGGCGGGGAGG+GGG + tig0020778:129400-129419 None:intergenic 55.0%
TATCCGCTTTGCCCCCTTCT+TGG - tig0020778:129648-129667 Msa1385940:CDS 55.0%
CTTTGTCGTCAAGCTCAGCC+TGG + tig0020778:130594-130613 None:intergenic 55.0%
!! GTCGAGGTGGTGGAGCTTTG+AGG + tig0020778:125394-125413 None:intergenic 60.0%
TGAATGCTCCGGTGAGGTCG+AGG + tig0020778:125410-125429 None:intergenic 60.0%
TGTGGGATAGGGTGCGTGGA+AGG + tig0020778:125449-125468 None:intergenic 60.0%
TGAGTGTGGGATAGGGTGCG+TGG + tig0020778:125453-125472 None:intergenic 60.0%
AGTTTCGTCCACGGCGGCTA+CGG + tig0020778:125568-125587 None:intergenic 60.0%
CGGGAAAGACGACGCAGATG+AGG - tig0020778:125805-125824 Msa1385940:intron 60.0%
TTTCGCCGAGTAGGACGGTG+AGG - tig0020778:125919-125938 Msa1385940:intron 60.0%
TTCGCCGAGTAGGACGGTGA+GGG - tig0020778:125920-125939 Msa1385940:intron 60.0%
! AGCACGGCCAGAACTTGCTC+CGG + tig0020778:127060-127079 None:intergenic 60.0%
CCGTGCTTCGACTGCTGAGA+AGG - tig0020778:127073-127092 Msa1385940:intron 60.0%
TTCCCTGTGCGTGGAAGCAG+TGG - tig0020778:127506-127525 Msa1385940:intron 60.0%
CTTCCACTGCTTCCACGCAC+AGG + tig0020778:127512-127531 None:intergenic 60.0%
GACAGTAGAGGAAGCTGCCG+AGG - tig0020778:127974-127993 Msa1385940:intron 60.0%
TAGAGGAAGCTGCCGAGGAC+TGG - tig0020778:127979-127998 Msa1385940:intron 60.0%
ACCATGGCAGGGTTTGGGGA+AGG - tig0020778:128650-128669 Msa1385940:CDS 60.0%
CCATGGCAGGGTTTGGGGAA+GGG - tig0020778:128651-128670 Msa1385940:CDS 60.0%
! AAAGCTAATGGCGGGGAGGG+GGG + tig0020778:129399-129418 None:intergenic 60.0%
TCGCCAAGAAGGGGGCAAAG+CGG + tig0020778:129654-129673 None:intergenic 60.0%
TGGCAGGATTCAGGGAAGGG+TGG - tig0020778:130192-130211 Msa1385940:intron 60.0%
GGCAGGATTCAGGGAAGGGT+GGG - tig0020778:130193-130212 Msa1385940:intron 60.0%
CTCCACCACCTCGACCTCAC+CGG - tig0020778:125399-125418 Msa1385940:three_prime_UTR 65.0%
ATGCTCCGGTGAGGTCGAGG+TGG + tig0020778:125407-125426 None:intergenic 65.0%
TTTATCCGCCGTAGCCGCCG+TGG - tig0020778:125557-125576 Msa1385940:three_prime_UTR 65.0%
AGGAAGCTGCCGAGGACTGG+AGG - tig0020778:127982-128001 Msa1385940:intron 65.0%
CCCTTCCCCAAACCCTGCCA+TGG + tig0020778:128654-128673 None:intergenic 65.0%
! AAGCTAATGGCGGGGAGGGG+GGG + tig0020778:129398-129417 None:intergenic 65.0%
CTCCGGTGAGGTCGAGGTGG+TGG + tig0020778:125404-125423 None:intergenic 70.0%
TTCGTCCACGGCGGCTACGG+CGG + tig0020778:125565-125584 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020778 gene 125236 131237 125236 ID=Msa1385940;Name=Msa1385940
tig0020778 mRNA 125236 131237 125236 ID=Msa1385940-mRNA-1;Parent=Msa1385940;Name=Msa1385940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|0.77|0.9|0.9|1|1|10|396|724
tig0020778 exon 125236 125727 125236 ID=Msa1385940-mRNA-1:exon:9871;Parent=Msa1385940-mRNA-1
tig0020778 exon 125825 125929 125825 ID=Msa1385940-mRNA-1:exon:9870;Parent=Msa1385940-mRNA-1
tig0020778 exon 127093 127221 127093 ID=Msa1385940-mRNA-1:exon:9869;Parent=Msa1385940-mRNA-1
tig0020778 exon 127361 127462 127361 ID=Msa1385940-mRNA-1:exon:9868;Parent=Msa1385940-mRNA-1
tig0020778 exon 128379 128534 128379 ID=Msa1385940-mRNA-1:exon:9867;Parent=Msa1385940-mRNA-1
tig0020778 exon 128636 128815 128636 ID=Msa1385940-mRNA-1:exon:9866;Parent=Msa1385940-mRNA-1
tig0020778 exon 128896 129036 128896 ID=Msa1385940-mRNA-1:exon:9865;Parent=Msa1385940-mRNA-1
tig0020778 exon 129379 129720 129379 ID=Msa1385940-mRNA-1:exon:9864;Parent=Msa1385940-mRNA-1
tig0020778 exon 130012 130083 130012 ID=Msa1385940-mRNA-1:exon:9863;Parent=Msa1385940-mRNA-1
tig0020778 exon 130241 131237 130241 ID=Msa1385940-mRNA-1:exon:9862;Parent=Msa1385940-mRNA-1
tig0020778 five_prime_UTR 131093 131237 131093 ID=Msa1385940-mRNA-1:five_prime_utr;Parent=Msa1385940-mRNA-1
tig0020778 CDS 130241 131092 130241 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 130012 130083 130012 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 129379 129720 129379 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 128896 129036 128896 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 128636 128815 128636 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 128379 128534 128379 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 127361 127462 127361 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 127093 127221 127093 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 125825 125929 125825 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 CDS 125632 125727 125632 ID=Msa1385940-mRNA-1:cds;Parent=Msa1385940-mRNA-1
tig0020778 three_prime_UTR 125236 125631 125236 ID=Msa1385940-mRNA-1:three_prime_utr;Parent=Msa1385940-mRNA-1
Gene Sequence

>Msa1385940

ATGGAGTTGGCCTCAAAGCTCCACCACCTCGACCTCACCGGAGCATTCATTCTCGATTCACGACGCCTTCCACGCACCCTATCCCACACTCATCTCATCGCCAAACCCAACACCTTCAACACTAACACTAACCCCAATCGATTCTTCACTTCAAAAAAACTCAATCATACTTCACGTTTATCCGCCGTAGCCGCCGTGGACGAAACTTCAGTAGCTGAAGACGATATCGAGTCACTATTTACCGATACTTCAGTCGATGAACGACGCGGTAACAATAAACAATCTAACACCGGAGCTTCAAGCGTTTCGTCTGGTGTGAAGTTGGAAAATATTAGAAAAACTTACAAAGGTGTCACGGTTTTGAAAGAGGTTAATTGGGAAGTGAAAAAGGGTGAGAAAGTGGGTTTAGTTGGTGTAAATGGTGCGGGAAAGACGACGCAGATGAGGATTATTGCAGGTTTGGAGGAACCGGATTCGGGGAATGTGATTAAAGCGAAACCAAATATGAAAATTGCGTTTTTGAGTCAGGAATTTGAGGTTTCGCCGAGTAGGACGGTGAGGGAAGAGTTTATGAGTGCTTTCAAAGAGGAAATGGAGGTTGCGGGGAAATTGGAGAAAGTGCAGAAGGCGCTTGAGGGTTCTGTGAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCTCAGGCTGTGAATTTGGATGTTGTTGATTCGAAGATAAGTAAGTTGATGCCTGAGCTTGGTTTTGGTGTAGAGGATTCCGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAGATTTTGCTTCAGTGTCGAGTCTGTATTGGAGATTGGATGTGTCTTCAATTGGAAGTGTCTAGTGGTGGTATTGCAAATTGCATGGAACCAGATTTGTTGTTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACAATTGAGTGGCTTGAAGATTATCTTAACAAGCAGGATGTGCCGATGGTTATCATTTCTCACGACAGAGCTTTTCTCGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCCCAGTATATTCTTTCAAAGGCGACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAAACAAGAGAGTTGATAAGCAGGTTAGGTGCCGGAGCAAGTTCTGGCCGTGCTTCGACTGCTGAGAAGAAATTGGAAAGACTTCTTGGAGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGTGCGTGGAAGCAGTGGAAGATCTGTTGTAACAGTTAGGAACTTGGATTTTGGCTTTGAGGATAAAAAACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAATCAGCGGTGAAGTTATCCTTGGGGAGCATAATGTATTGCCTAACTATTTCGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAGACGGTGCTTGAGACAGTAGAGGAAGCTGCCGAGGACTGGAGGAGTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTACTTGTTTTGGATGAACCAACGAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAGTACGAGGGCACCGTTATCACCGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCACTGTGCAGGATTATGCTGGAGATTACAATTATTATTTGGAGAAGAATCTTGATGCCAGGGAAAAAGAGCTTGAACGCCAGGCTGAGCTTGACGACAAAGCTCCTAAATTGAAAGCCAAATCCAAGATGTCAAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAGCAAGCAAAACAGAAGTCTAAAGGTGCAAAGAATTCAAAGAGATGGAATTAA
Protein sequence

>Msa1385940

MELASKLHHLDLTGAFILDSRRLPRTLSHTHLIAKPNTFNTNTNPNRFFTSKKLNHTSRLSAVAAVDETSVAEDDIESLFTDTSVDERRGNNKQSNTGASSVSSGVKLENIRKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSPSRTVREEFMSAFKEEMEVAGKLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDVVDSKISKLMPELGFGVEDSDRLVASFSGGWQMRMCLGKILLQCRVCIGDWMCLQLEVSSGGIANCMEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAEKKLERLLGEELVEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKKLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEVKDGTVQDYAGDYNYYLEKNLDAREKELERQAELDDKAPKLKAKSKMSKAEKEARKKQKMQAFQQAKQKSKGAKNSKRWN*