AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927890 MtrunA17_Chr6g0484911 96.250 160 6 0 1 160 47 206 7.03e-115 323
Msa0927890 MtrunA17_Chr5g0422751 68.212 151 39 4 14 160 11 156 1.35e-68 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927890 AT1G68660.1 74.172 151 33 4 14 160 11 159 3.50e-74 219
Msa0927890 AT1G68660.2 55.629 151 31 5 14 160 11 129 3.75e-46 147

Find 58 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAGGTGATAAATATTT+TGG 0.167312 6_2:+72462423 Msa0927890:intron
ACCAATCAGTAGTAATATTT+AGG 0.222061 6_2:+72465073 Msa0927890:three_prime_UTR
TCAATTTACACCTTACATTA+TGG 0.281795 6_2:+72461668 Msa0927890:five_prime_UTR
ATGCAAGAAGCACATATTAA+TGG 0.300616 6_2:+72464606 Msa0927890:CDS
ACTGCGTAATGAAGCTTTCA+TGG 0.315741 6_2:-72461828 None:intergenic
GGCACCTAGTTCTATACTTT+GGG 0.359915 6_2:-72461748 None:intergenic
ATTCACCACAGTCAGTAAAT+TGG 0.370829 6_2:+72464773 Msa0927890:three_prime_UTR
GTTTCAAATATGGCAAAGAT+AGG 0.389452 6_2:+72462445 Msa0927890:CDS
CGTTTGATCATCTTTATTCA+AGG 0.399029 6_2:-72464798 None:intergenic
TGGCACCTAGTTCTATACTT+TGG 0.400978 6_2:-72461749 None:intergenic
GGTATATATAGTAAAACTAT+AGG 0.415959 6_2:+72464908 Msa0927890:three_prime_UTR
ACCTAAATATTACTACTGAT+TGG 0.423762 6_2:-72465074 None:intergenic
GCAATATCAACTGTCATTCC+AGG 0.427583 6_2:-72464573 None:intergenic
GTCAAATTCAGATTCTCGTC+CGG 0.430228 6_2:-72462547 None:intergenic
TGCATGCAATTGAGAGGAAA+TGG 0.433575 6_2:+72464675 Msa0927890:CDS
TTGTTCGATCTTCATTCAAA+AGG 0.444402 6_2:+72464862 Msa0927890:three_prime_UTR
GTGGCAATTGGAAATAATAA+TGG 0.445292 6_2:-72461779 None:intergenic
GAGAATCTGAATTTGACTTA+AGG 0.445426 6_2:+72462553 Msa0927890:CDS
GAGTGGATGCATTGAGTAGT+TGG 0.453547 6_2:-72461880 None:intergenic
TTTGGGGTGACCATAATGTA+AGG 0.460535 6_2:-72461678 None:intergenic
TGGAAAAGGTGGTGGTTTGT+TGG 0.473028 6_2:+72462494 Msa0927890:CDS
GTATACAATCTATCTTTAAG+TGG 0.490214 6_2:-72464975 None:intergenic
ATGTGAGGTGTGGTGGCAAT+TGG 0.491429 6_2:-72461791 None:intergenic
TTGTGTAGCATTACTCTGTA+TGG 0.492187 6_2:-72464498 None:intergenic
TTCCTCTCAATTGCATGCAA+TGG 0.502233 6_2:-72464671 None:intergenic
GTATATATAGTAAAACTATA+GGG 0.507181 6_2:+72464909 Msa0927890:three_prime_UTR
CTACTCAATGCATCCACTCC+TGG 0.512586 6_2:+72461884 Msa0927890:CDS
TTAGGTGAAATTAGAGCAAG+TGG 0.519142 6_2:-72461857 None:intergenic
TCAAATTCAGATTCTCGTCC+GGG 0.525010 6_2:-72462546 None:intergenic
TAGTAAAACTATAGGGTGCT+AGG 0.525302 6_2:+72464916 Msa0927890:three_prime_UTR
ACATTGGTAGCCAATGGAAA+AGG 0.525846 6_2:+72462480 Msa0927890:CDS
ATTTATGACAAGACATTGAA+CGG 0.532711 6_2:+72465001 Msa0927890:three_prime_UTR
ACTCAACAACCACCATCAGC+TGG 0.532785 6_2:-72464717 None:intergenic
TATACAATCTATCTTTAAGT+GGG 0.544157 6_2:-72464974 None:intergenic
TCTCTCTATGTGAGGTGTGG+TGG 0.546834 6_2:-72461798 None:intergenic
AGTTCAATTGAGCCAGCTGA+TGG 0.556313 6_2:+72464705 Msa0927890:CDS
GATGCATTGAGTAGTTGGTT+AGG 0.562303 6_2:-72461875 None:intergenic
CACTCCCAAAGTATAGAACT+AGG 0.564811 6_2:+72461744 Msa0927890:five_prime_UTR
GTAGCCAATGGAAAAGGTGG+TGG 0.570640 6_2:+72462486 Msa0927890:CDS
AGGTTCCAATTTACTGACTG+TGG 0.570732 6_2:-72464778 None:intergenic
TAGGAGTGTTGTAATGACAT+TGG 0.574699 6_2:+72462464 Msa0927890:CDS
CAATCTATCTTTAAGTGGGA+AGG 0.577145 6_2:-72464970 None:intergenic
GAGTCTCTCTATGTGAGGTG+TGG 0.598875 6_2:-72461801 None:intergenic
CTGATGTGCACGACGTGTCA+CGG 0.606402 6_2:+72461624 None:intergenic
CTGATTGATTGACTGTGGTG+AGG 0.610148 6_2:+72464887 Msa0927890:three_prime_UTR
GACCATTGCATGCAATTGAG+AGG 0.614338 6_2:+72464669 Msa0927890:CDS
TCTATCTTTAAGTGGGAAGG+AGG 0.615317 6_2:-72464967 None:intergenic
GAAATAATAATGGCAAGATG+TGG 0.615375 6_2:-72461769 None:intergenic
TTGGTAGCCAATGGAAAAGG+TGG 0.633632 6_2:+72462483 Msa0927890:CDS
GTGTTGATGAAAGTGATACC+TGG 0.634232 6_2:+72464555 Msa0927890:CDS
TGTGTTATAATTACCAGGAG+TGG 0.636157 6_2:-72461897 None:intergenic
AAGTGGGAAGGAGGACACCA+TGG 0.643900 6_2:-72464958 None:intergenic
TGTAGCATTACTCTGTATGG+TGG 0.656579 6_2:-72464495 None:intergenic
GTAATGACATTGGTAGCCAA+TGG 0.658082 6_2:+72462474 Msa0927890:CDS
ACATATTAATGGATTAGCAG+TGG 0.658551 6_2:+72464617 Msa0927890:CDS
TACTGACTGTGGTGAATGCG+AGG 0.662618 6_2:-72464767 None:intergenic
TCAATTGAGCCAGCTGATGG+TGG 0.665740 6_2:+72464708 Msa0927890:CDS
AGGTTCTGATTGATTGACTG+TGG 0.694312 6_2:+72464882 Msa0927890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCCTAAAATTATAATAATAA+AGG + chr6_2:72462288-72462307 Msa0927890:intron 10.0%
!! CCTAAAATTATAATAATAAA+GGG + chr6_2:72462289-72462308 Msa0927890:intron 10.0%
!! CATTAAAAAATATTGTATTA+AGG + chr6_2:72462367-72462386 Msa0927890:intron 10.0%
!! TTAAAAAAATTTATTCAATG+CGG - chr6_2:72462877-72462896 None:intergenic 10.0%
!!! ACTAGTAAATTATTTTATTA+TGG + chr6_2:72463593-72463612 Msa0927890:intron 10.0%
!! AATTACTAACATTTAATAAT+AGG + chr6_2:72463845-72463864 Msa0927890:intron 10.0%
!! AAAAAATGAAAAAATTATTG+TGG - chr6_2:72463872-72463891 None:intergenic 10.0%
!!! TTACTATGTTGATTTTTTTT+GGG - chr6_2:72461698-72461717 None:intergenic 15.0%
!!! TTTACTATGTTGATTTTTTT+TGG - chr6_2:72461699-72461718 None:intergenic 15.0%
!! TTTCAACCATAATATAAAAT+CGG + chr6_2:72462140-72462159 Msa0927890:intron 15.0%
!!! CCCTTTATTATTATAATTTT+AGG - chr6_2:72462292-72462311 None:intergenic 15.0%
!!! AAATATTTTGGTTTCAAATA+TGG + chr6_2:72462435-72462454 Msa0927890:CDS 15.0%
!! TAAAAAAATTTATTCAATGC+GGG - chr6_2:72462876-72462895 None:intergenic 15.0%
!!! TAAAATTTTGATGTGAAATA+TGG - chr6_2:72463286-72463305 None:intergenic 15.0%
!! ACAATAAAATATGTTATCAA+AGG - chr6_2:72464444-72464463 None:intergenic 15.0%
!!! ATTTTATTGTTTTTGTTACT+AGG + chr6_2:72464454-72464473 Msa0927890:intron 15.0%
!! GTATATATAGTAAAACTATA+GGG + chr6_2:72464909-72464928 Msa0927890:three_prime_UTR 15.0%
!!! TATTGTTTTTTAATGAAACA+AGG + chr6_2:72465122-72465141 Msa0927890:three_prime_UTR 15.0%
!!! TACTATGTTGATTTTTTTTG+GGG - chr6_2:72461697-72461716 None:intergenic 20.0%
!! TTCAACCATAATATAAAATC+GGG + chr6_2:72462141-72462160 Msa0927890:intron 20.0%
!! AATTTATGGTCAAAATGTTT+AGG - chr6_2:72462171-72462190 None:intergenic 20.0%
!!! AATATTTTCTTCAATTGAGT+TGG - chr6_2:72462215-72462234 None:intergenic 20.0%
!! CATATAAAATTTGTAATTGC+AGG + chr6_2:72462408-72462427 Msa0927890:intron 20.0%
!! AAAAAAATTTATTCAATGCG+GGG - chr6_2:72462875-72462894 None:intergenic 20.0%
!!! CAATGATAGTTTTTATAACA+CGG + chr6_2:72463010-72463029 Msa0927890:intron 20.0%
!!! ATAAAATAGTTTTCTGCATT+CGG + chr6_2:72463066-72463085 Msa0927890:intron 20.0%
!!! CACATTTTAAATTCAAATGT+TGG + chr6_2:72463534-72463553 Msa0927890:intron 20.0%
!!! AAGTTAAGAAAATCATTTTG+TGG + chr6_2:72463985-72464004 Msa0927890:intron 20.0%
!! ACAAGGAAATACAAATAAAA+GGG - chr6_2:72464046-72464065 None:intergenic 20.0%
!! ACATAATCACATTAATTGAA+AGG + chr6_2:72464075-72464094 Msa0927890:intron 20.0%
!! ACAAACCGATAAAAAAAATA+TGG + chr6_2:72464265-72464284 Msa0927890:intron 20.0%
!!! AGTGACCATATTTTTTTTAT+CGG - chr6_2:72464273-72464292 None:intergenic 20.0%
!! AAAAAATATGGTCACTAAAT+TGG + chr6_2:72464277-72464296 Msa0927890:intron 20.0%
!! GGTATATATAGTAAAACTAT+AGG + chr6_2:72464908-72464927 Msa0927890:three_prime_UTR 20.0%
!!! TATATTATACACATTTTCCA+TGG + chr6_2:72464941-72464960 Msa0927890:three_prime_UTR 20.0%
!! TATACAATCTATCTTTAAGT+GGG - chr6_2:72464977-72464996 None:intergenic 20.0%
! TCAATTTACACCTTACATTA+TGG + chr6_2:72461668-72461687 Msa0927890:five_prime_UTR 25.0%
! CCGAACTTTAAATTATAGAA+GGG - chr6_2:72462088-72462107 None:intergenic 25.0%
!! CCCTTCTATAATTTAAAGTT+CGG + chr6_2:72462085-72462104 Msa0927890:intron 25.0%
! ACCGAACTTTAAATTATAGA+AGG - chr6_2:72462089-72462108 None:intergenic 25.0%
!! GATAACCCGATTTTATATTA+TGG - chr6_2:72462149-72462168 None:intergenic 25.0%
! CGATTAACAAGCTTAATTTA+TGG - chr6_2:72462185-72462204 None:intergenic 25.0%
! ATTGATGAAATTGTGTAAGA+AGG + chr6_2:72462232-72462251 Msa0927890:intron 25.0%
!! ATTGCAGGTGATAAATATTT+TGG + chr6_2:72462423-72462442 Msa0927890:intron 25.0%
! AGTATGCATAAATACCAATT+AGG + chr6_2:72462691-72462710 Msa0927890:intron 25.0%
!! TAAAATAGTTTTCTGCATTC+GGG + chr6_2:72463067-72463086 Msa0927890:intron 25.0%
! ATATGGTATCAATTGGTATT+AGG - chr6_2:72463269-72463288 None:intergenic 25.0%
! ATGTGAAATATGGTATCAAT+TGG - chr6_2:72463276-72463295 None:intergenic 25.0%
! ACATTAGAAGTTGAAAGATT+AGG + chr6_2:72463317-72463336 Msa0927890:intron 25.0%
! CATTAGAAGTTGAAAGATTA+GGG + chr6_2:72463318-72463337 Msa0927890:intron 25.0%
!!! AAATGTGAAGCTGTTTTTTT+AGG - chr6_2:72463521-72463540 None:intergenic 25.0%
! TTTCAACATTGTTATACACA+TGG - chr6_2:72463805-72463824 None:intergenic 25.0%
! ACATAATTAGTTGTCAAAAG+TGG + chr6_2:72463904-72463923 Msa0927890:intron 25.0%
! GACAAGGAAATACAAATAAA+AGG - chr6_2:72464047-72464066 None:intergenic 25.0%
! CATTGTTTATGTAGTTACAT+AGG - chr6_2:72464126-72464145 None:intergenic 25.0%
! AGAGATCGAAAATATCAAAT+CGG + chr6_2:72464171-72464190 Msa0927890:intron 25.0%
! TCGTTAACATTAGAAATTAG+CGG + chr6_2:72464194-72464213 Msa0927890:intron 25.0%
! TTCTTAGTACTTTAGATTGA+AGG + chr6_2:72464316-72464335 Msa0927890:intron 25.0%
! GTATACAATCTATCTTTAAG+TGG - chr6_2:72464978-72464997 None:intergenic 25.0%
! ATTTATGACAAGACATTGAA+CGG + chr6_2:72465001-72465020 Msa0927890:three_prime_UTR 25.0%
! ACCAATCAGTAGTAATATTT+AGG + chr6_2:72465073-72465092 Msa0927890:three_prime_UTR 25.0%
! ACCTAAATATTACTACTGAT+TGG - chr6_2:72465077-72465096 None:intergenic 25.0%
GAAATAATAATGGCAAGATG+TGG - chr6_2:72461772-72461791 None:intergenic 30.0%
GTGGCAATTGGAAATAATAA+TGG - chr6_2:72461782-72461801 None:intergenic 30.0%
GTTTCAAATATGGCAAAGAT+AGG + chr6_2:72462445-72462464 Msa0927890:CDS 30.0%
! GAGAATCTGAATTTGACTTA+AGG + chr6_2:72462553-72462572 Msa0927890:CDS 30.0%
GCATTACAACATTTCTCTAA+GGG - chr6_2:72462924-72462943 None:intergenic 30.0%
TGCATTACAACATTTCTCTA+AGG - chr6_2:72462925-72462944 None:intergenic 30.0%
AAAGAAGCAACTAAATCAAG+CGG - chr6_2:72462984-72463003 None:intergenic 30.0%
GTATCAATTGGTATTAGGTA+TGG - chr6_2:72463264-72463283 None:intergenic 30.0%
GGTCTAACTAAAATTTGACT+CGG + chr6_2:72463394-72463413 Msa0927890:intron 30.0%
ATGTCTGTCTAAGAACTTAA+CGG - chr6_2:72463467-72463486 None:intergenic 30.0%
AGTACACCTCAAATTGTAAA+AGG - chr6_2:72463565-72463584 None:intergenic 30.0%
! TACAATTTGAGGTGTACTTA+AGG + chr6_2:72463567-72463586 Msa0927890:intron 30.0%
! ACAATTTGAGGTGTACTTAA+GGG + chr6_2:72463568-72463587 Msa0927890:intron 30.0%
GTTCAATGGGAAGAATATAA+TGG - chr6_2:72463655-72463674 None:intergenic 30.0%
! CTTCACATGTTTAGTTCAAT+GGG - chr6_2:72463668-72463687 None:intergenic 30.0%
! ACTTCACATGTTTAGTTCAA+TGG - chr6_2:72463669-72463688 None:intergenic 30.0%
GATTATGTGATATCATGACA+AGG - chr6_2:72464063-72464082 None:intergenic 30.0%
TTTAACGACATTTCCTAAGT+CGG + chr6_2:72464217-72464236 Msa0927890:intron 30.0%
ACGAGTGTTAATATCATGTT+AGG - chr6_2:72464354-72464373 None:intergenic 30.0%
TAACATGATATTAACACTCG+TGG + chr6_2:72464353-72464372 Msa0927890:intron 30.0%
GGTTATATAAATCATTCCAG+TGG + chr6_2:72464374-72464393 Msa0927890:intron 30.0%
! ATGCAAGAAGCACATATTAA+TGG + chr6_2:72464606-72464625 Msa0927890:CDS 30.0%
!! ACATATTAATGGATTAGCAG+TGG + chr6_2:72464617-72464636 Msa0927890:CDS 30.0%
CGTTTGATCATCTTTATTCA+AGG - chr6_2:72464801-72464820 None:intergenic 30.0%
TTGTTCGATCTTCATTCAAA+AGG + chr6_2:72464862-72464881 Msa0927890:three_prime_UTR 30.0%
TTAGGTGAAATTAGAGCAAG+TGG - chr6_2:72461860-72461879 None:intergenic 35.0%
TGTGTTATAATTACCAGGAG+TGG - chr6_2:72461900-72461919 None:intergenic 35.0%
GTGGATGTGTTATAATTACC+AGG - chr6_2:72461905-72461924 None:intergenic 35.0%
AGAAGAAGCAATATAGAGAG+TGG - chr6_2:72461924-72461943 None:intergenic 35.0%
! GGGAATTTTTCTCTAACAAG+AGG - chr6_2:72462068-72462087 None:intergenic 35.0%
!! TAGGAGTGTTGTAATGACAT+TGG + chr6_2:72462464-72462483 Msa0927890:CDS 35.0%
!!! GTTGTTTTTTCTATGGTTGG+AGG - chr6_2:72462525-72462544 None:intergenic 35.0%
!!! GGTGTTGTTTTTTCTATGGT+TGG - chr6_2:72462528-72462547 None:intergenic 35.0%
ACCATAGAAAAAACAACACC+CGG + chr6_2:72462528-72462547 Msa0927890:CDS 35.0%
GCATAAATACCAATTAGGCA+TGG + chr6_2:72462696-72462715 Msa0927890:intron 35.0%
AGTATATGAGAATCGGGTAT+GGG - chr6_2:72462761-72462780 None:intergenic 35.0%
AAGTATATGAGAATCGGGTA+TGG - chr6_2:72462762-72462781 None:intergenic 35.0%
ACGGGTAAGTATATGAGAAT+CGG - chr6_2:72462768-72462787 None:intergenic 35.0%
AATTTATTCAATGCGGGGAT+GGG - chr6_2:72462870-72462889 None:intergenic 35.0%
AAATTTATTCAATGCGGGGA+TGG - chr6_2:72462871-72462890 None:intergenic 35.0%
CCAATGTAATGCTTTCATGT+TGG - chr6_2:72463376-72463395 None:intergenic 35.0%
!! CCAACATGAAAGCATTACAT+TGG + chr6_2:72463373-72463392 Msa0927890:intron 35.0%
!! TTTGACTCGGAGAATCTTTA+AGG + chr6_2:72463407-72463426 Msa0927890:intron 35.0%
TTCTTTCTATCCACAAGACT+CGG - chr6_2:72463441-72463460 None:intergenic 35.0%
TGTCTGTCTAAGAACTTAAC+GGG - chr6_2:72463466-72463485 None:intergenic 35.0%
! GTGCATCCTTTTACAATTTG+AGG + chr6_2:72463556-72463575 Msa0927890:intron 35.0%
ATTGTTATACACATGGAGGA+TGG - chr6_2:72463798-72463817 None:intergenic 35.0%
CAACATTGTTATACACATGG+AGG - chr6_2:72463802-72463821 None:intergenic 35.0%
ACACATGCAGAAAGATAGAT+AGG - chr6_2:72464020-72464039 None:intergenic 35.0%
! ATGACGCATTGATACAAACA+CGG - chr6_2:72464412-72464431 None:intergenic 35.0%
TTGTGTAGCATTACTCTGTA+TGG - chr6_2:72464501-72464520 None:intergenic 35.0%
ATTCACCACAGTCAGTAAAT+TGG + chr6_2:72464773-72464792 Msa0927890:three_prime_UTR 35.0%
! TAGTAAAACTATAGGGTGCT+AGG + chr6_2:72464916-72464935 Msa0927890:three_prime_UTR 35.0%
CAATCTATCTTTAAGTGGGA+AGG - chr6_2:72464973-72464992 None:intergenic 35.0%
! TTTGGGGTGACCATAATGTA+AGG - chr6_2:72461681-72461700 None:intergenic 40.0%
CACTCCCAAAGTATAGAACT+AGG + chr6_2:72461744-72461763 Msa0927890:five_prime_UTR 40.0%
!! GGCACCTAGTTCTATACTTT+GGG - chr6_2:72461751-72461770 None:intergenic 40.0%
!! TGGCACCTAGTTCTATACTT+TGG - chr6_2:72461752-72461771 None:intergenic 40.0%
!! GTTTTGAGTCTCTCTATGTG+AGG - chr6_2:72461809-72461828 None:intergenic 40.0%
ACTGCGTAATGAAGCTTTCA+TGG - chr6_2:72461831-72461850 None:intergenic 40.0%
GATGCATTGAGTAGTTGGTT+AGG - chr6_2:72461878-72461897 None:intergenic 40.0%
! GTAATGACATTGGTAGCCAA+TGG + chr6_2:72462474-72462493 Msa0927890:CDS 40.0%
! ACATTGGTAGCCAATGGAAA+AGG + chr6_2:72462480-72462499 Msa0927890:CDS 40.0%
!!! TCCGGGTGTTGTTTTTTCTA+TGG - chr6_2:72462532-72462551 None:intergenic 40.0%
TCAAATTCAGATTCTCGTCC+GGG - chr6_2:72462549-72462568 None:intergenic 40.0%
GTCAAATTCAGATTCTCGTC+CGG - chr6_2:72462550-72462569 None:intergenic 40.0%
ATACCAATTAGGCATGGCAA+TGG + chr6_2:72462702-72462721 Msa0927890:intron 40.0%
TACCAATTAGGCATGGCAAT+GGG + chr6_2:72462703-72462722 Msa0927890:intron 40.0%
GTATATGAGAATCGGGTATG+GGG - chr6_2:72462760-72462779 None:intergenic 40.0%
CGGGTAAGTATATGAGAATC+GGG - chr6_2:72462767-72462786 None:intergenic 40.0%
TTCAATTTCTCATCCCCGTT+GGG - chr6_2:72462804-72462823 None:intergenic 40.0%
ATTTATTCAATGCGGGGATG+GGG - chr6_2:72462869-72462888 None:intergenic 40.0%
! ATAGTTTTCTGCATTCGGGA+CGG + chr6_2:72463071-72463090 Msa0927890:intron 40.0%
! TTTTCCCCGATGTCAAAACA+CGG - chr6_2:72463150-72463169 None:intergenic 40.0%
AAAACCCGTCAAATTGGGTT+TGG + chr6_2:72463204-72463223 Msa0927890:intron 40.0%
!! TCGGAGAATCTTTAAGGTCT+TGG + chr6_2:72463413-72463432 Msa0927890:intron 40.0%
!! CGGAGAATCTTTAAGGTCTT+GGG + chr6_2:72463414-72463433 Msa0927890:intron 40.0%
ACTAACTTAGAGTCCGACTT+AGG - chr6_2:72464233-72464252 None:intergenic 40.0%
TGTAGCATTACTCTGTATGG+TGG - chr6_2:72464498-72464517 None:intergenic 40.0%
! GTGTTGATGAAAGTGATACC+TGG + chr6_2:72464555-72464574 Msa0927890:CDS 40.0%
GCAATATCAACTGTCATTCC+AGG - chr6_2:72464576-72464595 None:intergenic 40.0%
TTCCTCTCAATTGCATGCAA+TGG - chr6_2:72464674-72464693 None:intergenic 40.0%
TGCATGCAATTGAGAGGAAA+TGG + chr6_2:72464675-72464694 Msa0927890:CDS 40.0%
! AGGTTCCAATTTACTGACTG+TGG - chr6_2:72464781-72464800 None:intergenic 40.0%
! AGGTTCTGATTGATTGACTG+TGG + chr6_2:72464882-72464901 Msa0927890:three_prime_UTR 40.0%
TCTATCTTTAAGTGGGAAGG+AGG - chr6_2:72464970-72464989 None:intergenic 40.0%
GAGTGGATGCATTGAGTAGT+TGG - chr6_2:72461883-72461902 None:intergenic 45.0%
! TTGGTAGCCAATGGAAAAGG+TGG + chr6_2:72462483-72462502 Msa0927890:CDS 45.0%
! CAAACCACCACCTTTTCCAT+TGG - chr6_2:72462493-72462512 None:intergenic 45.0%
! TGGAAAAGGTGGTGGTTTGT+TGG + chr6_2:72462494-72462513 Msa0927890:CDS 45.0%
ACCAATTAGGCATGGCAATG+GGG + chr6_2:72462704-72462723 Msa0927890:intron 45.0%
GTTCAATTTCTCATCCCCGT+TGG - chr6_2:72462805-72462824 None:intergenic 45.0%
! TAGTTTTCTGCATTCGGGAC+GGG + chr6_2:72463072-72463091 Msa0927890:intron 45.0%
CGATGTCAAAACACGGGTAT+GGG - chr6_2:72463143-72463162 None:intergenic 45.0%
!!! CCATACCCGTGTTTTGACAT+CGG + chr6_2:72463141-72463160 Msa0927890:intron 45.0%
!!! CATACCCGTGTTTTGACATC+GGG + chr6_2:72463142-72463161 Msa0927890:intron 45.0%
!!! ATACCCGTGTTTTGACATCG+GGG + chr6_2:72463143-72463162 Msa0927890:intron 45.0%
TTTCCCCGATGTCAAAACAC+GGG - chr6_2:72463149-72463168 None:intergenic 45.0%
! TTTTGTCTGGGTTCGGGTAT+GGG - chr6_2:72463179-72463198 None:intergenic 45.0%
ATACCCGAACCCAGACAAAA+CGG + chr6_2:72463179-72463198 Msa0927890:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG - chr6_2:72463211-72463230 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG - chr6_2:72463212-72463231 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG + chr6_2:72463209-72463228 Msa0927890:intron 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG + chr6_2:72463210-72463229 Msa0927890:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG + chr6_2:72463214-72463233 Msa0927890:intron 45.0%
CCACAGCTATTATAGCAGCA+AGG - chr6_2:72463747-72463766 None:intergenic 45.0%
CCTTGCTGCTATAATAGCTG+TGG + chr6_2:72463744-72463763 Msa0927890:intron 45.0%
GCTATAATAGCTGTGGTCAC+TGG + chr6_2:72463751-72463770 Msa0927890:intron 45.0%
ACGGACATCATATACACCAC+TGG - chr6_2:72464393-72464412 None:intergenic 45.0%
GACCATTGCATGCAATTGAG+AGG + chr6_2:72464669-72464688 Msa0927890:CDS 45.0%
AGTTCAATTGAGCCAGCTGA+TGG + chr6_2:72464705-72464724 Msa0927890:CDS 45.0%
CTGATTGATTGACTGTGGTG+AGG + chr6_2:72464887-72464906 Msa0927890:three_prime_UTR 45.0%
ATGTGAGGTGTGGTGGCAAT+TGG - chr6_2:72461794-72461813 None:intergenic 50.0%
TCTCTCTATGTGAGGTGTGG+TGG - chr6_2:72461801-72461820 None:intergenic 50.0%
GAGTCTCTCTATGTGAGGTG+TGG - chr6_2:72461804-72461823 None:intergenic 50.0%
CTACTCAATGCATCCACTCC+TGG + chr6_2:72461884-72461903 Msa0927890:CDS 50.0%
GTAGCCAATGGAAAAGGTGG+TGG + chr6_2:72462486-72462505 Msa0927890:CDS 50.0%
AATTAGGCATGGCAATGGGG+CGG + chr6_2:72462707-72462726 Msa0927890:intron 50.0%
TGAGAATCGGGTATGGGGAT+GGG - chr6_2:72462755-72462774 None:intergenic 50.0%
ATGAGAATCGGGTATGGGGA+TGG - chr6_2:72462756-72462775 None:intergenic 50.0%
TTGGGTATGGGTAGGGTAAC+GGG - chr6_2:72462786-72462805 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG - chr6_2:72462787-72462806 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG + chr6_2:72462786-72462805 Msa0927890:intron 50.0%
TTACCCTACCCATACCCAAC+GGG + chr6_2:72462787-72462806 Msa0927890:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - chr6_2:72462798-72462817 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - chr6_2:72462799-72462818 None:intergenic 50.0%
TCAAAACACGGGTATGGGAC+GGG - chr6_2:72463138-72463157 None:intergenic 50.0%
GTCAAAACACGGGTATGGGA+CGG - chr6_2:72463139-72463158 None:intergenic 50.0%
CCGATGTCAAAACACGGGTA+TGG - chr6_2:72463144-72463163 None:intergenic 50.0%
! GTTTTGTCTGGGTTCGGGTA+TGG - chr6_2:72463180-72463199 None:intergenic 50.0%
TACCCGAACCCAGACAAAAC+GGG + chr6_2:72463180-72463199 Msa0927890:intron 50.0%
! TTCCCCGTTTTGTCTGGGTT+CGG - chr6_2:72463186-72463205 None:intergenic 50.0%
! GGGTTTTCCCCGTTTTGTCT+GGG - chr6_2:72463191-72463210 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG + chr6_2:72463198-72463217 Msa0927890:intron 50.0%
CGGGGAAAACCCGTCAAATT+GGG + chr6_2:72463199-72463218 Msa0927890:intron 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG + chr6_2:72463213-72463232 Msa0927890:intron 50.0%
TCAATTGAGCCAGCTGATGG+TGG + chr6_2:72464708-72464727 Msa0927890:CDS 50.0%
ACTCAACAACCACCATCAGC+TGG - chr6_2:72464720-72464739 None:intergenic 50.0%
! TACTGACTGTGGTGAATGCG+AGG - chr6_2:72464770-72464789 None:intergenic 50.0%
GCCCCATTGCCATGCCTAAT+TGG - chr6_2:72462708-72462727 None:intergenic 55.0%
ATTAGGCATGGCAATGGGGC+GGG + chr6_2:72462708-72462727 Msa0927890:intron 55.0%
GAGAATCGGGTATGGGGATG+GGG - chr6_2:72462754-72462773 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG + chr6_2:72462788-72462807 Msa0927890:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - chr6_2:72462793-72462812 None:intergenic 55.0%
ATACCCGAATCCGTTGGGGA+CGG - chr6_2:72462835-72462854 None:intergenic 55.0%
TTCAATGCGGGGATGGGGAT+GGG - chr6_2:72462864-72462883 None:intergenic 55.0%
ATTCAATGCGGGGATGGGGA+TGG - chr6_2:72462865-72462884 None:intergenic 55.0%
! TTCTGCATTCGGGACGGGTT+TGG + chr6_2:72463077-72463096 Msa0927890:intron 55.0%
! TCTGCATTCGGGACGGGTTT+GGG + chr6_2:72463078-72463097 Msa0927890:intron 55.0%
! ATTCGGGACGGGTTTGGGTA+CGG + chr6_2:72463083-72463102 Msa0927890:intron 55.0%
!! GGGACGGGTAACGGGTATAT+TGG - chr6_2:72463123-72463142 None:intergenic 55.0%
CTGGGTTCGGGTATGGGTTT+GGG - chr6_2:72463173-72463192 None:intergenic 55.0%
TCTGGGTTCGGGTATGGGTT+TGG - chr6_2:72463174-72463193 None:intergenic 55.0%
ACCCGAACCCAGACAAAACG+GGG + chr6_2:72463181-72463200 Msa0927890:intron 55.0%
! TCCCCGTTTTGTCTGGGTTC+GGG - chr6_2:72463185-72463204 None:intergenic 55.0%
! CGGGTTTTCCCCGTTTTGTC+TGG - chr6_2:72463192-72463211 None:intergenic 55.0%
!! TTGGTTCGGGTGGGTAACCA+CGG + chr6_2:72463223-72463242 Msa0927890:intron 55.0%
GGCAACAAAACCCATACCCG+TGG - chr6_2:72463243-72463262 None:intergenic 55.0%
AAGTGGGAAGGAGGACACCA+TGG - chr6_2:72464961-72464980 None:intergenic 55.0%
TTAGGCATGGCAATGGGGCG+GGG + chr6_2:72462709-72462728 Msa0927890:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG - chr6_2:72462794-72462813 None:intergenic 60.0%
AATCCGTTGGGGACGGGGAT+GGG - chr6_2:72462828-72462847 None:intergenic 60.0%
! ATCCCCGTCCCCAACGGATT+CGG + chr6_2:72462828-72462847 Msa0927890:intron 60.0%
TACCCGAATCCGTTGGGGAC+GGG - chr6_2:72462834-72462853 None:intergenic 60.0%
GGGGATACCCGAATCCGTTG+GGG - chr6_2:72462839-72462858 None:intergenic 60.0%
CGGGGATACCCGAATCCGTT+GGG - chr6_2:72462840-72462859 None:intergenic 60.0%
TCAATGCGGGGATGGGGATG+GGG - chr6_2:72462863-72462882 None:intergenic 60.0%
! TTCGGGACGGGTTTGGGTAC+GGG + chr6_2:72463084-72463103 Msa0927890:intron 60.0%
! GACGGGTTTGGGTACGGGTT+CGG + chr6_2:72463089-72463108 Msa0927890:intron 60.0%
ACGGGTTTGGGTACGGGTTC+GGG + chr6_2:72463090-72463109 Msa0927890:intron 60.0%
TTTGGGTACGGGTTCGGGGT+GGG + chr6_2:72463095-72463114 Msa0927890:intron 60.0%
ACGGGTATGGGACGGGTAAC+GGG - chr6_2:72463131-72463150 None:intergenic 60.0%
CACGGGTATGGGACGGGTAA+CGG - chr6_2:72463132-72463151 None:intergenic 60.0%
! TGGTTCGGGTGGGTAACCAC+GGG + chr6_2:72463224-72463243 Msa0927890:intron 60.0%
GGGTGGGTAACCACGGGTAT+GGG + chr6_2:72463230-72463249 Msa0927890:intron 60.0%
GGTCTTGGGTCCGAGTCTTG+TGG + chr6_2:72463428-72463447 Msa0927890:intron 60.0%
AACCCCATCCCCGTCCCCAA+CGG + chr6_2:72462822-72462841 Msa0927890:intron 65.0%
ATCCGTTGGGGACGGGGATG+GGG - chr6_2:72462827-72462846 None:intergenic 65.0%
GAATCCGTTGGGGACGGGGA+TGG - chr6_2:72462829-72462848 None:intergenic 65.0%
! TCCCCGTCCCCAACGGATTC+GGG + chr6_2:72462829-72462848 Msa0927890:intron 65.0%
ACCCGAATCCGTTGGGGACG+GGG - chr6_2:72462833-72462852 None:intergenic 65.0%
GCGGGGATACCCGAATCCGT+TGG - chr6_2:72462841-72462860 None:intergenic 65.0%
CGGGTTTGGGTACGGGTTCG+GGG + chr6_2:72463091-72463110 Msa0927890:intron 65.0%
GTTTGGGTACGGGTTCGGGG+TGG + chr6_2:72463094-72463113 Msa0927890:intron 65.0%
CGGGTGGGTAACCACGGGTA+TGG + chr6_2:72463229-72463248 Msa0927890:intron 65.0%
GCATGGCAATGGGGCGGGGT+GGG + chr6_2:72462713-72462732 Msa0927890:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG + chr6_2:72462714-72462733 Msa0927890:intron 70.0%
ATGCGGGGATGGGGATGGGG+CGG - chr6_2:72462860-72462879 None:intergenic 70.0%
GGCATGGCAATGGGGCGGGG+TGG + chr6_2:72462712-72462731 Msa0927890:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG + chr6_2:72462718-72462737 Msa0927890:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG + chr6_2:72462719-72462738 Msa0927890:intron 75.0%
TGCGGGGATGGGGATGGGGC+GGG - chr6_2:72462859-72462878 None:intergenic 75.0%
! GCGGGGATGGGGATGGGGCG+GGG - chr6_2:72462858-72462877 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 72461639 72465178 72461639 ID=Msa0927890;Name=Msa0927890
chr6_2 mRNA 72461639 72465178 72461639 ID=Msa0927890-mRNA-1;Parent=Msa0927890;Name=Msa0927890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|3|441|160
chr6_2 exon 72461639 72461905 72461639 ID=Msa0927890-mRNA-1:exon:12254;Parent=Msa0927890-mRNA-1
chr6_2 exon 72462430 72462574 72462430 ID=Msa0927890-mRNA-1:exon:12255;Parent=Msa0927890-mRNA-1
chr6_2 exon 72464476 72465178 72464476 ID=Msa0927890-mRNA-1:exon:12256;Parent=Msa0927890-mRNA-1
chr6_2 five_prime_UTR 72461639 72461829 72461639 ID=Msa0927890-mRNA-1:five_prime_utr;Parent=Msa0927890-mRNA-1
chr6_2 CDS 72461830 72461905 72461830 ID=Msa0927890-mRNA-1:cds;Parent=Msa0927890-mRNA-1
chr6_2 CDS 72462430 72462574 72462430 ID=Msa0927890-mRNA-1:cds;Parent=Msa0927890-mRNA-1
chr6_2 CDS 72464476 72464737 72464476 ID=Msa0927890-mRNA-1:cds;Parent=Msa0927890-mRNA-1
chr6_2 three_prime_UTR 72464738 72465178 72464738 ID=Msa0927890-mRNA-1:three_prime_utr;Parent=Msa0927890-mRNA-1
Gene Sequence

>Msa0927890

ATGAAAGCTTCATTACGCAGTACTACTCCACTTGCTCTAATTTCACCTAACCAACTACTCAATGCATCCACTCCTGGTGATAAATATTTTGGTTTCAAATATGGCAAAGATAGGAGTGTTGTAATGACATTGGTAGCCAATGGAAAAGGTGGTGGTTTGTTGGACAAGCCTCCAACCATAGAAAAAACAACACCCGGACGAGAATCTGAATTTGACTTAAGGAAATCAAAAAAGACATCTCCACCATACAGAGTAATGCTACACAATGACAACTATAACAAAAGAGAATATGTTGTGCAAGTGTTGATGAAAGTGATACCTGGAATGACAGTTGATATTGCAGTTAACGTCATGCAAGAAGCACATATTAATGGATTAGCAGTGGTCATTATTTGTGCTCAAGTTGATGCTGAAGACCATTGCATGCAATTGAGAGGAAATGGTCTTTTAAGTTCAATTGAGCCAGCTGATGGTGGTTGTTGA

Protein sequence

>Msa0927890

MKASLRSTTPLALISPNQLLNASTPGDKYFGFKYGKDRSVVMTLVANGKGGGLLDKPPTIEKTTPGRESEFDLRKSKKTSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHINGLAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGC*