AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0216560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216560 MtrunA17_Chr2g0318131 96.206 369 9 2 1 367 1 366 0.0 722
Msa0216560 MtrunA17_Chr2g0324001 75.745 235 57 0 132 366 77 311 1.84e-137 397
Msa0216560 MtrunA17_Chr6g0465041 23.810 168 128 0 181 348 56 223 3.39e-15 74.7
Msa0216560 MtrunA17_Chr1g0187331 29.032 186 120 6 178 360 9 185 1.43e-14 72.0
Msa0216560 MtrunA17_Chr1g0207521 27.273 176 125 2 181 354 85 259 3.01e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216560 AT1G52870.2 64.560 364 109 6 2 360 4 352 4.14e-164 467
Msa0216560 AT4G03410.2 74.597 248 62 1 122 369 72 318 4.95e-142 410
Msa0216560 AT4G03410.1 75.949 237 57 0 122 358 72 308 2.94e-140 404
Msa0216560 AT1G52870.1 59.813 321 105 7 2 317 4 305 2.47e-128 374
Msa0216560 AT5G43140.1 24.713 174 130 1 181 354 82 254 9.30e-14 71.6
Msa0216560 AT4G33905.1 26.111 180 128 2 181 360 86 260 1.08e-13 71.2
Msa0216560 AT2G14860.1 26.901 171 124 1 181 351 77 246 3.31e-13 69.7

Find 106 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATGATAGAGCTTATT+TGG 0.132143 2_1:-62614926 Msa0216560:CDS
CTAACATACATGAATTTCTT+AGG 0.138333 2_1:+62613920 None:intergenic
TTACTATTGATAGTGATTAT+TGG 0.193346 2_1:-62616599 Msa0216560:CDS
CGGTGCGCTGGACCTTAATT+TGG 0.229107 2_1:-62614008 Msa0216560:CDS
AGGTCAAAATTGTGTATATA+TGG 0.272639 2_1:-62613763 Msa0216560:three_prime_UTR
CGCTGGACCTTAATTTGGTT+TGG 0.284224 2_1:-62614003 Msa0216560:CDS
GCTAGTATTGTTCTTGTTGC+TGG 0.288636 2_1:-62616645 Msa0216560:CDS
CATCTGAGGTATGTGGCTTC+TGG 0.325314 2_1:-62614187 Msa0216560:intron
GATAGAAAAGATTATTATAA+TGG 0.338922 2_1:-62614042 Msa0216560:CDS
CAGTTGAGCAAAGACTTCTT+TGG 0.344032 2_1:-62614950 Msa0216560:CDS
TCTATGTCCAAACCAAATTA+AGG 0.351514 2_1:+62613996 None:intergenic
CTTGTTGGATTTGCTCTACA+TGG 0.353651 2_1:-62615462 Msa0216560:CDS
ACGACGCAAGTGAATGGATT+TGG 0.358783 2_1:-62616783 Msa0216560:CDS
AATTCATTGAAAATATTGAT+TGG 0.360409 2_1:+62615184 None:intergenic
TAGGATTCATTCTGTTAAAC+AGG 0.364327 2_1:-62613783 Msa0216560:three_prime_UTR
ATAAACTTACGTTGAAAGTA+TGG 0.377879 2_1:+62614899 None:intergenic
AAACTGCATGGTCGGCAGTT+TGG 0.384594 2_1:-62615252 Msa0216560:CDS
CTAAGAAATTCATGTATGTT+AGG 0.387434 2_1:-62613919 Msa0216560:CDS
ACACAACTGGTTAGCTTATG+AGG 0.392465 2_1:-62615725 Msa0216560:CDS
TTGTTTATTCCGTAGGAGAC+TGG 0.396989 2_1:-62615654 Msa0216560:CDS
CAAAGAAGTCTTTGCTCAAC+TGG 0.399250 2_1:+62614951 None:intergenic
TATTACAATGCAGTCGAGAT+AGG 0.404494 2_1:-62613802 Msa0216560:three_prime_UTR
AGATATGATAGAGCTTATTT+GGG 0.418869 2_1:-62614925 Msa0216560:CDS
TGACAAATTCTCATCATTTG+TGG 0.426992 2_1:+62613700 None:intergenic
TATGGTCTACCTCACAAAAC+TGG 0.429644 2_1:+62615418 None:intergenic
CTTCCCGAGTTCTTCGAGTT+GGG 0.430586 2_1:+62617105 None:intergenic
TGAACAATTACATTGTGTAA+TGG 0.437531 2_1:+62613873 None:intergenic
TCACTATCAAACCTTCTTGC+TGG 0.438486 2_1:+62616853 None:intergenic
GCTTCCCGAGTTCTTCGAGT+TGG 0.440297 2_1:+62617104 None:intergenic
AGTTGAGCAAAGACTTCTTT+GGG 0.441026 2_1:-62614949 Msa0216560:CDS
GAATTTGTCAATTGGCTGCT+TGG 0.442884 2_1:-62613687 Msa0216560:three_prime_UTR
TTGCCAAGATGGTGATTAGT+GGG 0.445228 2_1:-62615678 Msa0216560:CDS
ACGATGACGACGCAAGTGAA+TGG 0.447808 2_1:-62616789 Msa0216560:CDS
CGTGCACGGATGTTCAGATC+AGG 0.450132 2_1:-62615486 Msa0216560:CDS
TGATCGAAGGCAACTTTGAC+AGG 0.453007 2_1:+62615274 None:intergenic
GATAGTGAGCCGTGTGGAAA+TGG 0.454750 2_1:-62616838 Msa0216560:CDS
TTTGCTCATCTAATAACTTA+CGG 0.455935 2_1:-62614981 Msa0216560:CDS
TAACATACATGAATTTCTTA+GGG 0.463410 2_1:+62613921 None:intergenic
AATGATGAGAATTTGTCAAT+TGG 0.464549 2_1:-62613695 Msa0216560:three_prime_UTR
GACAAATTCTCATCATTTGT+GGG 0.470958 2_1:+62613701 None:intergenic
AGCATTTACTATACAGTTGT+GGG 0.481625 2_1:-62615226 Msa0216560:CDS
TCAGAGATGACCGAGTTAGA+TGG 0.484429 2_1:-62613738 Msa0216560:three_prime_UTR
TGAAGAGAATGTGGAGAGTG+TGG 0.488302 2_1:-62616694 Msa0216560:CDS
GATATGCACCTCTACACAAC+TGG 0.490397 2_1:-62615738 Msa0216560:CDS
AATGGATTTGGAGCGAATGA+AGG 0.492577 2_1:-62616771 Msa0216560:CDS
TCGAGTGCTTCGGGTTTGGT+TGG 0.494003 2_1:-62616726 Msa0216560:CDS
TTTGCCAAGATGGTGATTAG+TGG 0.494763 2_1:-62615679 Msa0216560:CDS
TAAGTTATTAGATGAGCAAA+TGG 0.497633 2_1:+62614984 None:intergenic
ATACAGCTACATCATCTCTC+TGG 0.497719 2_1:-62617210 None:intergenic
GAATGAAGTTCACGGTGCGC+TGG 0.500228 2_1:-62614020 Msa0216560:CDS
GGAAGCTCTTAAGACAAATC+CGG 0.503288 2_1:-62615704 Msa0216560:CDS
AACCCCACTAATCACCATCT+TGG 0.505082 2_1:+62615675 None:intergenic
AGCTATTTCCTTACAAAGGA+TGG 0.507459 2_1:-62615306 Msa0216560:CDS
TGATTATTGCAGTGCTTCGA+AGG 0.509560 2_1:-62615531 Msa0216560:intron
ATGTTCAGATCAGGGCTTGT+TGG 0.511574 2_1:-62615477 Msa0216560:CDS
AACTCACCAACTCACTTCAA+TGG 0.515712 2_1:-62617078 Msa0216560:exon
AGTGGGGTTGTTTATTCCGT+AGG 0.516098 2_1:-62615661 Msa0216560:CDS
GAAGGTTTGTTATCGTTGGA+AGG 0.524445 2_1:-62616753 Msa0216560:CDS
CAGCATTTACTATACAGTTG+TGG 0.531133 2_1:-62615227 Msa0216560:CDS
ACTACCCACCATCCTTTGTA+AGG 0.532543 2_1:+62615298 None:intergenic
GCACGATCAAACTCGAAAAG+AGG 0.532545 2_1:+62615504 None:intergenic
CTCACCCAACTCGAAGAACT+CGG 0.536502 2_1:-62617109 Msa0216560:five_prime_UTR
TTACATTGTGTAATGGCTAC+AGG 0.540618 2_1:+62613880 None:intergenic
TTATAATGGAATGAAGTTCA+CGG 0.545579 2_1:-62614028 Msa0216560:CDS
CTTCGATCAAACTGCATGGT+CGG 0.558882 2_1:-62615260 Msa0216560:CDS
GAATGAAGGTTTGTTATCGT+TGG 0.563825 2_1:-62616757 Msa0216560:CDS
GAAGAAACTGTGGTGAGGTA+CGG 0.565035 2_1:+62617040 None:intergenic
CTGTGCAATCCAGTCTCCTA+CGG 0.567009 2_1:+62615645 None:intergenic
GCCACATACCTCAGATGTAG+TGG 0.573931 2_1:+62614193 None:intergenic
TCACCCAACTCGAAGAACTC+GGG 0.575066 2_1:-62617108 Msa0216560:five_prime_UTR
TACAGGCAGGATGGAAGTTG+TGG 0.575586 2_1:-62615007 Msa0216560:intron
TTAGTGGAGAATCTTGATGC+TGG 0.575957 2_1:+62616966 None:intergenic
CAGGAGCTATTTCCTTACAA+AGG 0.576904 2_1:-62615310 Msa0216560:CDS
CTCCACCTTCCATTTCCACA+CGG 0.578288 2_1:+62616829 None:intergenic
TATTTCCTTACAAAGGATGG+TGG 0.578819 2_1:-62615303 Msa0216560:CDS
AGGTTCTCTTACAGTCAACA+TGG 0.583530 2_1:+62615144 None:intergenic
CGTAGGAGACTGGATTGCAC+AGG 0.590898 2_1:-62615644 Msa0216560:intron
TCCACTACATCTGAGGTATG+TGG 0.594924 2_1:-62614194 Msa0216560:CDS
CGACCATGCAGTTTGATCGA+AGG 0.598693 2_1:+62615261 None:intergenic
GAGCTTACATAGAAACGCGT+TGG 0.599393 2_1:+62617129 None:intergenic
TAATGAGAATGAAGAGAATG+TGG 0.602012 2_1:-62616703 Msa0216560:CDS
CGGAAGCCATTGAAGTGAGT+TGG 0.605246 2_1:+62617072 None:intergenic
GATATTACCGACCAGCAAGA+AGG 0.606909 2_1:-62616864 Msa0216560:CDS
ATTTCCTTACAAAGGATGGT+GGG 0.611721 2_1:-62615302 Msa0216560:CDS
TATCAAACCTTCTTGCTGGT+CGG 0.615716 2_1:+62616857 None:intergenic
GTGGAAATGGAAGGTGGAGA+TGG 0.619496 2_1:-62616825 Msa0216560:CDS
GTGAGGTACGGTGCTGTGAA+CGG 0.621994 2_1:+62617052 None:intergenic
TAAGCTAACCAGTTGTGTAG+AGG 0.623564 2_1:+62615730 None:intergenic
GTATGAACCACCATCTAACT+CGG 0.626281 2_1:+62613728 None:intergenic
AAATTTCACAAAACGTGCTG+CGG 0.628432 2_1:-62616940 Msa0216560:CDS
ACGCGTTGGTTCGTTTATAG+CGG 0.631474 2_1:+62617143 None:intergenic
AGCGAAATCCACTACATCTG+AGG 0.636729 2_1:-62614201 Msa0216560:CDS
GGTTCTCTTACAGTCAACAT+GGG 0.640571 2_1:+62615145 None:intergenic
GTGCACGGATGTTCAGATCA+GGG 0.649536 2_1:-62615485 Msa0216560:CDS
TTGCCTTCGATCAAACTGCA+TGG 0.649875 2_1:-62615264 Msa0216560:CDS
TGCCAAGATGGTGATTAGTG+GGG 0.651615 2_1:-62615677 Msa0216560:CDS
AGCCGTGTGGAAATGGAAGG+TGG 0.663739 2_1:-62616831 Msa0216560:CDS
GCATTTACTATACAGTTGTG+GGG 0.671450 2_1:-62615225 Msa0216560:CDS
GTGAGCCGTGTGGAAATGGA+AGG 0.679859 2_1:-62616834 Msa0216560:CDS
TGATTGGAGAATCAAAACGC+AGG 0.680696 2_1:+62615200 None:intergenic
GAGATGACCGAGTTAGATGG+TGG 0.691937 2_1:-62613735 Msa0216560:three_prime_UTR
GGAGAGAAGAAACTGTGGTG+AGG 0.701715 2_1:+62617035 None:intergenic
GTTCTCTTACAGTCAACATG+GGG 0.723534 2_1:+62615146 None:intergenic
AGATTGGAGAGAAGAAACTG+TGG 0.738656 2_1:+62617030 None:intergenic
AGGTTTGATAGTGAGCCGTG+TGG 0.739464 2_1:-62616844 Msa0216560:CDS
AGCGACGAAAGTATCAACAG+AGG 0.745709 2_1:-62616916 Msa0216560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAACATAAAGTAA+AGG + chr2_1:62614483-62614502 None:intergenic 10.0%
!! TTAAAAATAAAAACAAAAAC+AGG + chr2_1:62616761-62616780 None:intergenic 10.0%
!! AATTCATTGAAAATATTGAT+TGG + chr2_1:62615685-62615704 None:intergenic 15.0%
!!! GTTAAAAAGCATTTATATTA+TGG - chr2_1:62616733-62616752 Msa0216560:CDS 15.0%
!!! AATTTTTTCATATATTTACC+AGG - chr2_1:62616780-62616799 Msa0216560:CDS 15.0%
!! GATAGAAAAGATTATTATAA+TGG - chr2_1:62616824-62616843 Msa0216560:CDS 15.0%
!!! TTAGAAATGGATTTTGATTT+TGG + chr2_1:62613867-62613886 None:intergenic 20.0%
!!! TTACTATTGATAGTGATTAT+TGG - chr2_1:62614267-62614286 Msa0216560:intron 20.0%
!!! AATTTGCAATTTTATAGACT+AGG - chr2_1:62614398-62614417 Msa0216560:intron 20.0%
!!! CAATATTTTCAATGAATTGA+AGG - chr2_1:62615687-62615706 Msa0216560:CDS 20.0%
!!! TTCCTTAAATTTTCTTATAC+AGG - chr2_1:62615842-62615861 Msa0216560:intron 20.0%
!! TAACATACATGAATTTCTTA+GGG + chr2_1:62616948-62616967 None:intergenic 20.0%
!!! AATGGATTTTGATTTTGGTT+TGG + chr2_1:62613862-62613881 None:intergenic 25.0%
!!! AAAGTTTTGTGGTTTAGAAA+TGG + chr2_1:62613880-62613899 None:intergenic 25.0%
!!! TTTTGTGAAATTTGGATTAG+TGG + chr2_1:62613919-62613938 None:intergenic 25.0%
! GACTTGGAAATGATTAAATT+TGG - chr2_1:62614350-62614369 Msa0216560:intron 25.0%
! GTAAACTTCTCATCAAAATT+AGG - chr2_1:62614722-62614741 Msa0216560:intron 25.0%
!! AAATATTTTTCCATACGCAT+TGG + chr2_1:62614808-62614827 None:intergenic 25.0%
! CGTATGGAAAAATATTTGTT+TGG - chr2_1:62614811-62614830 Msa0216560:intron 25.0%
!! CACGTTTAAATTAGCTTATT+TGG + chr2_1:62614990-62615009 None:intergenic 25.0%
! TCAAGATAATCAAATTTGAC+TGG + chr2_1:62615038-62615057 None:intergenic 25.0%
!! ATTACCATTTATTTGTTGCA+TGG - chr2_1:62615752-62615771 Msa0216560:CDS 25.0%
! TGCCTGTATAAGAAAATTTA+AGG + chr2_1:62615847-62615866 None:intergenic 25.0%
!! TTAAATTTTCTTATACAGGC+AGG - chr2_1:62615846-62615865 Msa0216560:intron 25.0%
! TAAGTTATTAGATGAGCAAA+TGG + chr2_1:62615885-62615904 None:intergenic 25.0%
! TTTGCTCATCTAATAACTTA+CGG - chr2_1:62615885-62615904 Msa0216560:intron 25.0%
! TAGATATGATAGAGCTTATT+TGG - chr2_1:62615940-62615959 Msa0216560:intron 25.0%
! AGATATGATAGAGCTTATTT+GGG - chr2_1:62615941-62615960 Msa0216560:intron 25.0%
! ATAAACTTACGTTGAAAGTA+TGG + chr2_1:62615970-62615989 None:intergenic 25.0%
! AACACTTAATCAATTAGTGT+AGG + chr2_1:62616090-62616109 None:intergenic 25.0%
!! TTATAATGGAATGAAGTTCA+CGG - chr2_1:62616838-62616857 Msa0216560:CDS 25.0%
! CTAACATACATGAATTTCTT+AGG + chr2_1:62616949-62616968 None:intergenic 25.0%
! CTAAGAAATTCATGTATGTT+AGG - chr2_1:62616947-62616966 Msa0216560:CDS 25.0%
! TGAACAATTACATTGTGTAA+TGG + chr2_1:62616996-62617015 None:intergenic 25.0%
! AGGTCAAAATTGTGTATATA+TGG - chr2_1:62617103-62617122 Msa0216560:five_prime_UTR 25.0%
! AATGATGAGAATTTGTCAAT+TGG - chr2_1:62617171-62617190 Msa0216560:five_prime_UTR 25.0%
!!! TTTGATTTTGGTTTGGAGAT+TGG + chr2_1:62613855-62613874 None:intergenic 30.0%
TAATGAGAATGAAGAGAATG+TGG - chr2_1:62614163-62614182 Msa0216560:intron 30.0%
GATTAAATTTGGTTGTACTG+TGG - chr2_1:62614361-62614380 Msa0216560:intron 30.0%
AAAATAAGTCAATCCAAACC+CGG + chr2_1:62614424-62614443 None:intergenic 30.0%
TATTATTCATAAGCTTGTCG+AGG + chr2_1:62614592-62614611 None:intergenic 30.0%
AAAAACTAAGCCAATCCAAA+CGG - chr2_1:62614653-62614672 Msa0216560:intron 30.0%
!!! CGAAGAACTATACTTTTTCT+TGG + chr2_1:62614914-62614933 None:intergenic 30.0%
TAGACCAACTTTAAATTAGC+AGG + chr2_1:62614952-62614971 None:intergenic 30.0%
AGCTAATCTAAATTAGCAAC+TGG + chr2_1:62615015-62615034 None:intergenic 30.0%
! TGAATTTTTCCTTATCTGCT+AGG - chr2_1:62615055-62615074 Msa0216560:intron 30.0%
!! TTACTATTACCAGTTTTGTG+AGG - chr2_1:62615439-62615458 Msa0216560:CDS 30.0%
GGAAAAGAACATTGTTCATA+TGG + chr2_1:62615469-62615488 None:intergenic 30.0%
ATTCAAGAACAATGCAAGAA+AGG + chr2_1:62615490-62615509 None:intergenic 30.0%
TTCTTGAATTGTCTGACTTA+TGG - chr2_1:62615501-62615520 Msa0216560:CDS 30.0%
AGCATTTACTATACAGTTGT+GGG - chr2_1:62615640-62615659 Msa0216560:intron 30.0%
AATAAATGGTAATAGCCAGA+AGG + chr2_1:62615745-62615764 None:intergenic 30.0%
GTTTCCATGCAACAAATAAA+TGG + chr2_1:62615759-62615778 None:intergenic 30.0%
!! ATTATTTTTCTGAGAACCAG+TGG - chr2_1:62615783-62615802 Msa0216560:intron 30.0%
ACTTTCAACGTAAGTTTATC+TGG - chr2_1:62615971-62615990 Msa0216560:intron 30.0%
ACTATACAATTTCTCCTAGA+TGG + chr2_1:62616025-62616044 None:intergenic 30.0%
ATGTGTGAAAATGCATAGTA+TGG - chr2_1:62616058-62616077 Msa0216560:intron 30.0%
! ACTTGTGTTTTGTGATTGTT+TGG + chr2_1:62616281-62616300 None:intergenic 30.0%
! AAAGGAGCATACAGTTTATT+TGG + chr2_1:62616552-62616571 None:intergenic 30.0%
! CAATGGATATTTGCTAAGTT+TGG - chr2_1:62616711-62616730 Msa0216560:CDS 30.0%
TCTATGTCCAAACCAAATTA+AGG + chr2_1:62616873-62616892 None:intergenic 30.0%
TAGGATTCATTCTGTTAAAC+AGG - chr2_1:62617083-62617102 Msa0216560:five_prime_UTR 30.0%
GACAAATTCTCATCATTTGT+GGG + chr2_1:62617168-62617187 None:intergenic 30.0%
TGACAAATTCTCATCATTTG+TGG + chr2_1:62617169-62617188 None:intergenic 30.0%
AAATTTCACAAAACGTGCTG+CGG - chr2_1:62613926-62613945 Msa0216560:CDS 35.0%
!! GAATGAAGGTTTGTTATCGT+TGG - chr2_1:62614109-62614128 Msa0216560:intron 35.0%
! TGCAATTTTATAGACTAGGC+CGG - chr2_1:62614402-62614421 Msa0216560:intron 35.0%
AATCACTATACCGTTTGGAT+TGG + chr2_1:62614666-62614685 None:intergenic 35.0%
GTCATAATCACTATACCGTT+TGG + chr2_1:62614671-62614690 None:intergenic 35.0%
TTAGGTCATAGTTACCAACT+TGG - chr2_1:62614740-62614759 Msa0216560:intron 35.0%
TAGTCTATACATTTGCATGC+AGG - chr2_1:62614878-62614897 Msa0216560:intron 35.0%
AGTCTATACATTTGCATGCA+GGG - chr2_1:62614879-62614898 Msa0216560:intron 35.0%
! GAGTCCTGCTAATTTAAAGT+TGG - chr2_1:62614945-62614964 Msa0216560:CDS 35.0%
AACACAAATCCTAGCAGATA+AGG + chr2_1:62615067-62615086 None:intergenic 35.0%
! CAATCTTTTATCATGCACTG+TGG - chr2_1:62615300-62615319 Msa0216560:CDS 35.0%
ATGGAGATATGCTAATCAAG+TGG - chr2_1:62615520-62615539 Msa0216560:CDS 35.0%
! AGCTATTTCCTTACAAAGGA+TGG - chr2_1:62615560-62615579 Msa0216560:intron 35.0%
TATTTCCTTACAAAGGATGG+TGG - chr2_1:62615563-62615582 Msa0216560:intron 35.0%
ATTTCCTTACAAAGGATGGT+GGG - chr2_1:62615564-62615583 Msa0216560:intron 35.0%
CAGCATTTACTATACAGTTG+TGG - chr2_1:62615639-62615658 Msa0216560:intron 35.0%
GCATTTACTATACAGTTGTG+GGG - chr2_1:62615641-62615660 Msa0216560:intron 35.0%
! ATTTTCTTATACAGGCAGGA+TGG - chr2_1:62615850-62615869 Msa0216560:intron 35.0%
AGTTGAGCAAAGACTTCTTT+GGG - chr2_1:62615917-62615936 Msa0216560:intron 35.0%
! CTGCATAGAATTTTCCATCT+AGG - chr2_1:62616008-62616027 Msa0216560:intron 35.0%
TCATACTCAAAGATAGAACG+TGG - chr2_1:62616141-62616160 Msa0216560:intron 35.0%
AGCACTTGATCAATTAGTGT+AGG + chr2_1:62616324-62616343 None:intergenic 35.0%
!! TATCTCTTCTTTTTCACTCC+TGG + chr2_1:62616801-62616820 None:intergenic 35.0%
TTACATTGTGTAATGGCTAC+AGG + chr2_1:62616989-62617008 None:intergenic 35.0%
TATTACAATGCAGTCGAGAT+AGG - chr2_1:62617064-62617083 Msa0216560:exon 35.0%
AACTCACCAACTCACTTCAA+TGG - chr2_1:62613788-62613807 Msa0216560:three_prime_UTR 40.0%
AGATTGGAGAGAAGAAACTG+TGG + chr2_1:62613839-62613858 None:intergenic 40.0%
! CTTGATGCTGGAAAGTTTTG+TGG + chr2_1:62613891-62613910 None:intergenic 40.0%
TTAGTGGAGAATCTTGATGC+TGG + chr2_1:62613903-62613922 None:intergenic 40.0%
! GCAGCACGTTTTGTGAAATT+TGG + chr2_1:62613927-62613946 None:intergenic 40.0%
TATCAAACCTTCTTGCTGGT+CGG + chr2_1:62614012-62614031 None:intergenic 40.0%
TCACTATCAAACCTTCTTGC+TGG + chr2_1:62614016-62614035 None:intergenic 40.0%
! AATGGATTTGGAGCGAATGA+AGG - chr2_1:62614095-62614114 Msa0216560:intron 40.0%
!! GAAGGTTTGTTATCGTTGGA+AGG - chr2_1:62614113-62614132 Msa0216560:intron 40.0%
GCTAGTATTGTTCTTGTTGC+TGG - chr2_1:62614221-62614240 Msa0216560:CDS 40.0%
ATCGTGTGTCTGTGATTCTT+TGG - chr2_1:62614328-62614347 Msa0216560:intron 40.0%
TGTCTGTGATTCTTTGGACT+TGG - chr2_1:62614334-62614353 Msa0216560:intron 40.0%
! GCAATTTTATAGACTAGGCC+GGG - chr2_1:62614403-62614422 Msa0216560:intron 40.0%
!!! AGTTTTTAGCGTATGCGAAC+TGG + chr2_1:62614640-62614659 None:intergenic 40.0%
GCTAGAAATCGACACAAACT+TGG + chr2_1:62614693-62614712 None:intergenic 40.0%
!! GTTTGTGTCGATTTCTAGCT+TGG - chr2_1:62614694-62614713 Msa0216560:intron 40.0%
TATACATTTGCATGCAGGGA+GGG - chr2_1:62614883-62614902 Msa0216560:intron 40.0%
CTGCTAGGATTTGTGTTTCT+TGG - chr2_1:62615070-62615089 Msa0216560:intron 40.0%
!! TGTGTTTCTTGGTGCTATGT+AGG - chr2_1:62615081-62615100 Msa0216560:intron 40.0%
!! GTGTTTCTTGGTGCTATGTA+GGG - chr2_1:62615082-62615101 Msa0216560:intron 40.0%
TAAGCTAACCAGTTGTGTAG+AGG + chr2_1:62615139-62615158 None:intergenic 40.0%
!! ACACAACTGGTTAGCTTATG+AGG - chr2_1:62615141-62615160 Msa0216560:intron 40.0%
GGAAGCTCTTAAGACAAATC+CGG - chr2_1:62615162-62615181 Msa0216560:CDS 40.0%
! AAATCCGGTTTTTGCCAAGA+TGG - chr2_1:62615177-62615196 Msa0216560:CDS 40.0%
ATCACCATCTTGGCAAAAAC+CGG + chr2_1:62615184-62615203 None:intergenic 40.0%
TTTGCCAAGATGGTGATTAG+TGG - chr2_1:62615187-62615206 Msa0216560:CDS 40.0%
TTGCCAAGATGGTGATTAGT+GGG - chr2_1:62615188-62615207 Msa0216560:CDS 40.0%
TTGTTTATTCCGTAGGAGAC+TGG - chr2_1:62615212-62615231 Msa0216560:CDS 40.0%
TTTCATACACAGCTGAGTCT+CGG - chr2_1:62615264-62615283 Msa0216560:CDS 40.0%
!! TTCGAAGCACTGCAATAATC+AGG + chr2_1:62615336-62615355 None:intergenic 40.0%
TGATTATTGCAGTGCTTCGA+AGG - chr2_1:62615335-62615354 Msa0216560:intron 40.0%
!!! TTTTCGAGTTTGATCGTGCA+CGG - chr2_1:62615366-62615385 Msa0216560:intron 40.0%
! CTTGTTGGATTTGCTCTACA+TGG - chr2_1:62615404-62615423 Msa0216560:intron 40.0%
TATGGTCTACCTCACAAAAC+TGG + chr2_1:62615451-62615470 None:intergenic 40.0%
AAGTGGTCTCTCATTTATCC+AGG - chr2_1:62615537-62615556 Msa0216560:intron 40.0%
CTTTGTAAGGAAATAGCTCC+TGG + chr2_1:62615558-62615577 None:intergenic 40.0%
! CAGGAGCTATTTCCTTACAA+AGG - chr2_1:62615556-62615575 Msa0216560:intron 40.0%
TGATTGGAGAATCAAAACGC+AGG + chr2_1:62615669-62615688 None:intergenic 40.0%
GTTCTCTTACAGTCAACATG+GGG + chr2_1:62615723-62615742 None:intergenic 40.0%
GGTTCTCTTACAGTCAACAT+GGG + chr2_1:62615724-62615743 None:intergenic 40.0%
AGGTTCTCTTACAGTCAACA+TGG + chr2_1:62615725-62615744 None:intergenic 40.0%
TTGACTGTAAGAGAACCTTC+TGG - chr2_1:62615727-62615746 Msa0216560:CDS 40.0%
!! ATTTTTCTGAGAACCAGTGG+TGG - chr2_1:62615786-62615805 Msa0216560:intron 40.0%
CAAGATAATGTTACCACCAC+TGG + chr2_1:62615802-62615821 None:intergenic 40.0%
CAAAGAAGTCTTTGCTCAAC+TGG + chr2_1:62615918-62615937 None:intergenic 40.0%
CAGTTGAGCAAAGACTTCTT+TGG - chr2_1:62615916-62615935 Msa0216560:intron 40.0%
ACTTGTGTCGTGTAACTGTT+TGG + chr2_1:62616515-62616534 None:intergenic 40.0%
TCCTTTGTATATCTCTGCAG+TGG - chr2_1:62616566-62616585 Msa0216560:intron 40.0%
ACCACTGCAGAGATATACAA+AGG + chr2_1:62616570-62616589 None:intergenic 40.0%
!!! GCTTCTGGTTTTGTGATCAA+TGG - chr2_1:62616694-62616713 Msa0216560:CDS 40.0%
GTATGAACCACCATCTAACT+CGG + chr2_1:62617141-62617160 None:intergenic 40.0%
GAATTTGTCAATTGGCTGCT+TGG - chr2_1:62617179-62617198 Msa0216560:five_prime_UTR 40.0%
GGAGCCACACAAAAAGTCAT+AGG - chr2_1:62613677-62613696 Msa0216560:three_prime_UTR 45.0%
! GCGTCCTATGACTTTTTGTG+TGG + chr2_1:62613684-62613703 None:intergenic 45.0%
!! ACGCGTTGGTTCGTTTATAG+CGG + chr2_1:62613726-62613745 None:intergenic 45.0%
GAGCTTACATAGAAACGCGT+TGG + chr2_1:62613740-62613759 None:intergenic 45.0%
GAAGAAACTGTGGTGAGGTA+CGG + chr2_1:62613829-62613848 None:intergenic 45.0%
!! AGCGACGAAAGTATCAACAG+AGG - chr2_1:62613950-62613969 Msa0216560:CDS 45.0%
GATATTACCGACCAGCAAGA+AGG - chr2_1:62614002-62614021 Msa0216560:CDS 45.0%
! ACGACGCAAGTGAATGGATT+TGG - chr2_1:62614083-62614102 Msa0216560:intron 45.0%
!!! GGAAGGTTTTTCGAGTGCTT+CGG - chr2_1:62614130-62614149 Msa0216560:intron 45.0%
!!! GAAGGTTTTTCGAGTGCTTC+GGG - chr2_1:62614131-62614150 Msa0216560:intron 45.0%
!!! TTTTTCGAGTGCTTCGGGTT+TGG - chr2_1:62614136-62614155 Msa0216560:intron 45.0%
TGAAGAGAATGTGGAGAGTG+TGG - chr2_1:62614172-62614191 Msa0216560:intron 45.0%
TTTATAGACTAGGCCGGGTT+TGG - chr2_1:62614408-62614427 Msa0216560:intron 45.0%
!! ACTTGAGTTGATCGATCCCT+TGG - chr2_1:62614782-62614801 Msa0216560:intron 45.0%
! TTTCCATACGCATTGGCCAA+GGG + chr2_1:62614801-62614820 None:intergenic 45.0%
!! TTTTCCATACGCATTGGCCA+AGG + chr2_1:62614802-62614821 None:intergenic 45.0%
CTATACATTTGCATGCAGGG+AGG - chr2_1:62614882-62614901 Msa0216560:intron 45.0%
!! TTCTTGGTGCTATGTAGGGA+TGG - chr2_1:62615086-62615105 Msa0216560:intron 45.0%
GATATGCACCTCTACACAAC+TGG - chr2_1:62615128-62615147 Msa0216560:intron 45.0%
TGCCAAGATGGTGATTAGTG+GGG - chr2_1:62615189-62615208 Msa0216560:CDS 45.0%
AACCCCACTAATCACCATCT+TGG + chr2_1:62615194-62615213 None:intergenic 45.0%
AGTGGGGTTGTTTATTCCGT+AGG - chr2_1:62615205-62615224 Msa0216560:CDS 45.0%
! CTGAGTCTCGGTTAGTTGAA+TGG - chr2_1:62615276-62615295 Msa0216560:CDS 45.0%
GCACGATCAAACTCGAAAAG+AGG + chr2_1:62615365-62615384 None:intergenic 45.0%
ATGTTCAGATCAGGGCTTGT+TGG - chr2_1:62615389-62615408 Msa0216560:intron 45.0%
ACTACCCACCATCCTTTGTA+AGG + chr2_1:62615571-62615590 None:intergenic 45.0%
TGATCGAAGGCAACTTTGAC+AGG + chr2_1:62615595-62615614 None:intergenic 45.0%
TTGCCTTCGATCAAACTGCA+TGG - chr2_1:62615602-62615621 Msa0216560:intron 45.0%
CTTCGATCAAACTGCATGGT+CGG - chr2_1:62615606-62615625 Msa0216560:intron 45.0%
!! TCTCTGCAGTGGTTCTAACA+TGG - chr2_1:62616577-62616596 Msa0216560:intron 45.0%
AGCGAAATCCACTACATCTG+AGG - chr2_1:62616665-62616684 Msa0216560:CDS 45.0%
! TCCACTACATCTGAGGTATG+TGG - chr2_1:62616672-62616691 Msa0216560:CDS 45.0%
! CGCTGGACCTTAATTTGGTT+TGG - chr2_1:62616863-62616882 Msa0216560:CDS 45.0%
TCAGAGATGACCGAGTTAGA+TGG - chr2_1:62617128-62617147 Msa0216560:five_prime_UTR 45.0%
CTCACCCAACTCGAAGAACT+CGG - chr2_1:62613757-62613776 Msa0216560:three_prime_UTR 50.0%
TCACCCAACTCGAAGAACTC+GGG - chr2_1:62613758-62613777 Msa0216560:three_prime_UTR 50.0%
! CTTCCCGAGTTCTTCGAGTT+GGG + chr2_1:62613764-62613783 None:intergenic 50.0%
CGGAAGCCATTGAAGTGAGT+TGG + chr2_1:62613797-62613816 None:intergenic 50.0%
GGAGAGAAGAAACTGTGGTG+AGG + chr2_1:62613834-62613853 None:intergenic 50.0%
!! AGGTTTGATAGTGAGCCGTG+TGG - chr2_1:62614022-62614041 Msa0216560:CDS 50.0%
GATAGTGAGCCGTGTGGAAA+TGG - chr2_1:62614028-62614047 Msa0216560:CDS 50.0%
CTCCACCTTCCATTTCCACA+CGG + chr2_1:62614040-62614059 None:intergenic 50.0%
GTGGAAATGGAAGGTGGAGA+TGG - chr2_1:62614041-62614060 Msa0216560:CDS 50.0%
ACGATGACGACGCAAGTGAA+TGG - chr2_1:62614077-62614096 Msa0216560:intron 50.0%
CTGTGCAATCCAGTCTCCTA+CGG + chr2_1:62615224-62615243 None:intergenic 50.0%
GTGCACGGATGTTCAGATCA+GGG - chr2_1:62615381-62615400 Msa0216560:intron 50.0%
CGACCATGCAGTTTGATCGA+AGG + chr2_1:62615608-62615627 None:intergenic 50.0%
AAACTGCATGGTCGGCAGTT+TGG - chr2_1:62615614-62615633 Msa0216560:intron 50.0%
TACAGGCAGGATGGAAGTTG+TGG - chr2_1:62615859-62615878 Msa0216560:intron 50.0%
GCCACATACCTCAGATGTAG+TGG + chr2_1:62616676-62616695 None:intergenic 50.0%
! CATCTGAGGTATGTGGCTTC+TGG - chr2_1:62616679-62616698 Msa0216560:CDS 50.0%
GAGATGACCGAGTTAGATGG+TGG - chr2_1:62617131-62617150 Msa0216560:five_prime_UTR 50.0%
GCTTCCCGAGTTCTTCGAGT+TGG + chr2_1:62613765-62613784 None:intergenic 55.0%
!! GTGAGGTACGGTGCTGTGAA+CGG + chr2_1:62613817-62613836 None:intergenic 55.0%
GTGAGCCGTGTGGAAATGGA+AGG - chr2_1:62614032-62614051 Msa0216560:CDS 55.0%
AGCCGTGTGGAAATGGAAGG+TGG - chr2_1:62614035-62614054 Msa0216560:CDS 55.0%
! TCGAGTGCTTCGGGTTTGGT+TGG - chr2_1:62614140-62614159 Msa0216560:intron 55.0%
GATCCCTTGGCCAATGCGTA+TGG - chr2_1:62614795-62614814 Msa0216560:intron 55.0%
CGTAGGAGACTGGATTGCAC+AGG - chr2_1:62615222-62615241 Msa0216560:CDS 55.0%
CGTGCACGGATGTTCAGATC+AGG - chr2_1:62615380-62615399 Msa0216560:intron 55.0%
GAATGAAGTTCACGGTGCGC+TGG - chr2_1:62616846-62616865 Msa0216560:CDS 55.0%
CGGTGCGCTGGACCTTAATT+TGG - chr2_1:62616858-62616877 Msa0216560:CDS 55.0%
CCACTCGCGTCACACCAAGT+TGG + chr2_1:62614757-62614776 None:intergenic 60.0%
!! CCAACTTGGTGTGACGCGAG+TGG - chr2_1:62614754-62614773 Msa0216560:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 62613664 62617224 62613664 ID=Msa0216560;Name=Msa0216560
chr2_1 mRNA 62613664 62617224 62613664 ID=Msa0216560-mRNA-1;Parent=Msa0216560;Name=Msa0216560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=143|0.83|0.85|1|0.83|0.85|7|206|443
chr2_1 exon 62613664 62614086 62613664 ID=Msa0216560-mRNA-1:exon:17343;Parent=Msa0216560-mRNA-1
chr2_1 exon 62614188 62614271 62614188 ID=Msa0216560-mRNA-1:exon:17342;Parent=Msa0216560-mRNA-1
chr2_1 exon 62614909 62615024 62614909 ID=Msa0216560-mRNA-1:exon:17341;Parent=Msa0216560-mRNA-1
chr2_1 exon 62615156 62615329 62615156 ID=Msa0216560-mRNA-1:exon:17340;Parent=Msa0216560-mRNA-1
chr2_1 exon 62615428 62615541 62615428 ID=Msa0216560-mRNA-1:exon:17339;Parent=Msa0216560-mRNA-1
chr2_1 exon 62615645 62615785 62615645 ID=Msa0216560-mRNA-1:exon:17338;Parent=Msa0216560-mRNA-1
chr2_1 exon 62616596 62617224 62616596 ID=Msa0216560-mRNA-1:exon:17337;Parent=Msa0216560-mRNA-1
chr2_1 five_prime_UTR 62617082 62617224 62617082 ID=Msa0216560-mRNA-1:five_prime_utr;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62616596 62617081 62616596 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62615645 62615785 62615645 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62615428 62615541 62615428 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62615156 62615329 62615156 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62614909 62615024 62614909 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62614188 62614271 62614188 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 CDS 62613870 62614086 62613870 ID=Msa0216560-mRNA-1:cds;Parent=Msa0216560-mRNA-1
chr2_1 three_prime_UTR 62613664 62613869 62613664 ID=Msa0216560-mRNA-1:three_prime_utr;Parent=Msa0216560-mRNA-1
Gene Sequence

>Msa0216560

ATGGCTTCCGTTCACAGCACCGTACCTCACCACAGTTTCTTCTCTCCAATCTCCAAACCAAAATCAAAATCCATTTCTAAACCACAAAACTTTCCAGCATCAAGATTCTCCACTAATCCAAATTTCACAAAACGTGCTGCGGTAGCGACGAAAGTATCAACAGAGGAATTCGACGTAATAGCTGTACAGAGCAACGATATTACCGACCAGCAAGAAGGTTTGATAGTGAGCCGTGTGGAAATGGAAGGTGGAGATGGTGAATTAGCGACGACGATGACGACGCAAGTGAATGGATTTGGAGCGAATGAAGGTTTGTTATCGTTGGAAGGTTTTTCGAGTGCTTCGGGTTTGGTTGGTAATGAGAATGAAGAGAATGTGGAGAGTGTGGAGAAGCTTCTAGATAGAAGTATTAATGCTAGTATTGTTCTTGTTGCTGGTACTTTTGCTCTTACGAAGCTTCTTACTATTGATAGTGATTATTGGCATGGATGGACAATCTATGAGATAGTAAGATATGCACCTCTACACAACTGGTTAGCTTATGAGGAAGCTCTTAAGACAAATCCGGTTTTTGCCAAGATGGTGATTAGTGGGGTTGTTTATTCCGTAGGAGACTGGATTGCACAGTGCTTCGAAGGAAAGCCTCTTTTCGAGTTTGATCGTGCACGGATGTTCAGATCAGGGCTTGTTGGATTTGCTCTACATGGCTCTCTTTCTCATTACTATTACCAGTTTTGTGAGGAGCTATTTCCTTACAAAGGATGGTGGGTAGTTCCTGTCAAAGTTGCCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGCATTTACTATACAGTTGTGGGGATCCTGCGTTTTGATTCTCCAATCAATATTTTCAATGAATTGAAGGCAACATTTTTCCCCATGTTGACTGCAGGATGGAAGTTGTGGCCATTTGCTCATCTAATAACTTACGGTGTAATACCAGTTGAGCAAAGACTTCTTTGGGTAGATATGATAGAGCTTATTTGGGTGACCATACTTTCAACATATTCAAATGAAAAATCAGAAGCAAGAAGCTCTTCAGAGTCTATAGAAGCGAAATCCACTACATCTGAGGTATGTGGCTTCTGGAGTGAAAAAGAAGAGATATGTGATAGAAAAGATTATTATAATGGAATGAAGTTCACGGTGCGCTGGACCTTAATTTGGTTTGGACATAGATTTGTAATGCAGAATATTGAAGAAGCTGATTGTATATGTGTATATGTTGTATCCCTAAGAAATTCATGTATGTTAGGCAACATTATCAACTCTCCTGTAGCCATTACACAATGTAATTGTTCATAA

Protein sequence

>Msa0216560

MASVHSTVPHHSFFSPISKPKSKSISKPQNFPASRFSTNPNFTKRAAVATKVSTEEFDVIAVQSNDITDQQEGLIVSRVEMEGGDGELATTMTTQVNGFGANEGLLSLEGFSSASGLVGNENEENVESVEKLLDRSINASIVLVAGTFALTKLLTIDSDYWHGWTIYEIVRYAPLHNWLAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEGKPLFEFDRARMFRSGLVGFALHGSLSHYYYQFCEELFPYKGWWVVPVKVAFDQTAWSAVWNSIYYTVVGILRFDSPINIFNELKATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDMIELIWVTILSTYSNEKSEARSSSESIEAKSTTSEVCGFWSEKEEICDRKDYYNGMKFTVRWTLIWFGHRFVMQNIEEADCICVYVVSLRNSCMLGNIINSPVAITQCNCS*