Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080060 | XP_013450083.1 | 93.657 | 268 | 11 | 1 | 1 | 268 | 1 | 262 | 0.0 | 508 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080060 | I3T4K4 | 93.657 | 268 | 11 | 1 | 1 | 268 | 1 | 262 | 0.0 | 508 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0662340 | Msa1080060 | 0.813548 | 2.420986e-51 | -8.615850e-47 |
Msa0699280 | Msa1080060 | 0.808872 | 2.502298e-50 | -8.615850e-47 |
Msa0767300 | Msa1080060 | 0.800885 | 1.168453e-48 | -8.615850e-47 |
Msa0422280 | Msa1080060 | 0.800006 | 1.764091e-48 | -8.615850e-47 |
Msa0440440 | Msa1080060 | 0.812172 | 4.846911e-51 | -8.615850e-47 |
Msa0468800 | Msa1080060 | 0.801384 | 9.234968e-49 | -8.615850e-47 |
Msa1035960 | Msa1080060 | 0.816851 | 4.468813e-52 | -8.615850e-47 |
Msa1080060 | Msa1167380 | 0.942354 | 8.340435e-102 | -8.615850e-47 |
Msa1080060 | Msa1297230 | 0.800720 | 1.262238e-48 | -8.615850e-47 |
Msa1080060 | Msa1314650 | 0.801146 | 1.033278e-48 | -8.615850e-47 |
Msa1080060 | Msa1423100 | 0.824848 | 6.461078e-54 | -8.615850e-47 |
Msa0923010 | Msa1080060 | 0.800248 | 1.575394e-48 | -8.615850e-47 |
Msa0968880 | Msa1080060 | 0.859339 | 4.429512e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080060 | MtrunA17_Chr7g0265691 | 93.657 | 268 | 11 | 1 | 1 | 268 | 1 | 262 | 0.0 | 508 |
Msa1080060 | MtrunA17_Chr7g0265701 | 82.937 | 252 | 42 | 1 | 13 | 264 | 1 | 251 | 3.59e-153 | 427 |
Msa1080060 | MtrunA17_Chr7g0265581 | 70.681 | 191 | 53 | 3 | 72 | 260 | 18 | 207 | 1.29e-93 | 275 |
Msa1080060 | MtrunA17_Chr7g0255231 | 70.068 | 147 | 32 | 5 | 57 | 193 | 76 | 220 | 4.09e-61 | 192 |
Msa1080060 | MtrunA17_Chr7g0219531 | 40.000 | 235 | 128 | 4 | 39 | 266 | 32 | 260 | 4.33e-56 | 181 |
Msa1080060 | MtrunA17_Chr7g0219541 | 39.732 | 224 | 124 | 4 | 48 | 266 | 49 | 266 | 1.58e-53 | 174 |
Msa1080060 | MtrunA17_Chr2g0308461 | 39.381 | 226 | 129 | 3 | 48 | 268 | 281 | 503 | 4.31e-50 | 172 |
Msa1080060 | MtrunA17_Chr7g0219551 | 36.759 | 253 | 145 | 6 | 18 | 264 | 61 | 304 | 7.13e-47 | 158 |
Msa1080060 | MtrunA17_Chr7g0219521 | 40.741 | 189 | 104 | 3 | 33 | 214 | 28 | 215 | 6.48e-43 | 145 |
Msa1080060 | MtrunA17_Chr7g0265681 | 79.592 | 49 | 10 | 0 | 88 | 136 | 25 | 73 | 4.56e-23 | 90.1 |
Msa1080060 | MtrunA17_Chr7g0265671 | 62.500 | 48 | 18 | 0 | 213 | 260 | 51 | 98 | 4.47e-18 | 77.8 |
Msa1080060 | MtrunA17_Chr7g0265671 | 72.917 | 48 | 10 | 2 | 97 | 141 | 1 | 48 | 3.51e-16 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080060 | AT2G36540.1 | 48.462 | 260 | 111 | 6 | 14 | 265 | 5 | 249 | 1.17e-65 | 205 |
Msa1080060 | AT3G29760.5 | 41.000 | 200 | 108 | 3 | 66 | 260 | 321 | 515 | 6.19e-45 | 159 |
Msa1080060 | AT3G29760.3 | 41.000 | 200 | 108 | 3 | 66 | 260 | 321 | 515 | 6.19e-45 | 159 |
Msa1080060 | AT2G36550.1 | 51.145 | 131 | 60 | 2 | 135 | 265 | 15 | 141 | 7.16e-44 | 145 |
Msa1080060 | AT4G26190.2 | 38.249 | 217 | 122 | 5 | 49 | 260 | 843 | 1052 | 1.29e-41 | 152 |
Msa1080060 | AT4G26190.5 | 38.249 | 217 | 122 | 5 | 49 | 260 | 843 | 1052 | 1.29e-41 | 152 |
Msa1080060 | AT4G26190.3 | 38.249 | 217 | 122 | 5 | 49 | 260 | 843 | 1052 | 1.29e-41 | 152 |
Msa1080060 | AT4G26190.1 | 38.249 | 217 | 122 | 5 | 49 | 260 | 843 | 1052 | 1.29e-41 | 152 |
Msa1080060 | AT4G26190.4 | 38.249 | 217 | 122 | 5 | 49 | 260 | 843 | 1052 | 1.29e-41 | 152 |
Msa1080060 | AT3G29760.2 | 36.283 | 226 | 108 | 4 | 66 | 260 | 321 | 541 | 1.98e-39 | 144 |
Msa1080060 | AT3G29760.1 | 42.105 | 133 | 68 | 2 | 66 | 193 | 321 | 449 | 1.03e-27 | 111 |
Msa1080060 | AT3G29760.4 | 43.836 | 73 | 37 | 1 | 66 | 138 | 321 | 389 | 1.68e-12 | 67.4 |
Find 72 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGTGATTCATTATCTTATT+TGG | 0.131323 | 7_2:-79313850 | Msa1080060:three_prime_UTR |
TTCATAAATTCTTCACTAAA+TGG | 0.185254 | 7_2:+79315111 | None:intergenic |
TGATACACTTTGCAAAATTA+TGG | 0.203331 | 7_2:+79315511 | None:intergenic |
CTCAATTGTTAGCAGTTATA+CGG | 0.218202 | 7_2:+79314051 | None:intergenic |
AAAACAAGCTACTATTTGTT+TGG | 0.265573 | 7_2:-79314729 | Msa1080060:CDS |
ATAATAAGCAATTTCTTCTT+AGG | 0.282304 | 7_2:+79315347 | None:intergenic |
ACAAGTGAATTACCGGATTA+AGG | 0.285626 | 7_2:+79314447 | None:intergenic |
CAAGGTAAATGTAGAGATTC+TGG | 0.299926 | 7_2:-79314605 | Msa1080060:CDS |
TTGCTTATTATGAACCTTAA+CGG | 0.337126 | 7_2:-79315335 | Msa1080060:CDS |
TCAAGAGAAAGACCCAATTC+TGG | 0.351025 | 7_2:+79315386 | None:intergenic |
CCATGGTTCGAATTTGACTT+TGG | 0.358354 | 7_2:-79313789 | Msa1080060:three_prime_UTR |
AAACAAGCTACTATTTGTTT+GGG | 0.367088 | 7_2:-79314728 | Msa1080060:intron |
TTATGTATTATAAGATCATT+TGG | 0.370881 | 7_2:-79313731 | Msa1080060:three_prime_UTR |
GGTGCTTTAGCCTGTGCTAT+TGG | 0.376162 | 7_2:-79314760 | Msa1080060:CDS |
CATGGTTCGAATTTGACTTT+GGG | 0.376887 | 7_2:-79313788 | Msa1080060:three_prime_UTR |
AGATTCTGGCTTTAAATCCT+TGG | 0.379049 | 7_2:-79314591 | Msa1080060:CDS |
AAGTTCAGCAGAACCAGAAT+TGG | 0.383508 | 7_2:-79315399 | Msa1080060:CDS |
TGTCAGTGACACGAGCTCTA+TGG | 0.392097 | 7_2:+79315303 | None:intergenic |
TAATCAGCGGTCCGAGACTT+TGG | 0.398239 | 7_2:+79315269 | None:intergenic |
TACTTGCATATGTCACCATT+TGG | 0.400960 | 7_2:+79314191 | None:intergenic |
ATACCCATGTAATGATGGTT+TGG | 0.409691 | 7_2:-79313890 | Msa1080060:three_prime_UTR |
TTTGCAAAGTGTATCAAGAA+TGG | 0.412015 | 7_2:-79315504 | Msa1080060:exon |
AAAGTATTTGAAGCAGAATA+TGG | 0.421185 | 7_2:+79314500 | None:intergenic |
GGAACGAACACGAGAATAGA+AGG | 0.423928 | 7_2:+79314073 | None:intergenic |
ATACATTTAATTTAGGATCA+AGG | 0.424490 | 7_2:-79314623 | Msa1080060:intron |
AAAGATTTGAAGTGGGTGTC+TGG | 0.432400 | 7_2:-79315077 | Msa1080060:CDS |
GGATGAGATGTTGTAATTGC+TGG | 0.437119 | 7_2:+79314104 | None:intergenic |
ATACAAGTCTTTCCTTAATC+CGG | 0.442145 | 7_2:-79314459 | Msa1080060:intron |
TTACAACATCTCATCCTGAT+TGG | 0.449737 | 7_2:-79314097 | Msa1080060:CDS |
GCCTTGTCATCCTTGTCCTC+AGG | 0.462508 | 7_2:+79314317 | None:intergenic |
CGAGAATAGAAGGCCCAATC+AGG | 0.463741 | 7_2:+79314083 | None:intergenic |
TACAACATCTCATCCTGATT+GGG | 0.472152 | 7_2:-79314096 | Msa1080060:CDS |
TGCTTTATAACAAGTGGAAA+AGG | 0.475081 | 7_2:+79315564 | None:intergenic |
TTTACTTGCTTTATAACAAG+TGG | 0.489937 | 7_2:+79315558 | None:intergenic |
GCAATTTATTGTAAAATCCA+TGG | 0.492025 | 7_2:-79313806 | Msa1080060:three_prime_UTR |
GGATTAAGGAAAGACTTGTA+TGG | 0.503951 | 7_2:+79314461 | None:intergenic |
TATGGAGAAGAAATCCGTTA+AGG | 0.508168 | 7_2:+79315321 | None:intergenic |
CTGCTTAGAAAGATTTGAAG+TGG | 0.511785 | 7_2:-79315085 | Msa1080060:CDS |
ATAATTTGAATAGATCCAAA+TGG | 0.511910 | 7_2:-79314206 | Msa1080060:intron |
GGGTGTCTGGTCTTCTGCAA+TGG | 0.513381 | 7_2:-79315064 | Msa1080060:CDS |
AGTTCAGCAGAACCAGAATT+GGG | 0.514991 | 7_2:-79315398 | Msa1080060:CDS |
TTGAAAGGAGTAGCTGAAGC+TGG | 0.516919 | 7_2:-79314167 | Msa1080060:CDS |
TTTCGAATCGCCAATAGCAC+AGG | 0.520821 | 7_2:+79314750 | None:intergenic |
AAATGCAGGCATAATGTTGA+TGG | 0.521362 | 7_2:-79314781 | Msa1080060:intron |
TCAATTGTTAGCAGTTATAC+GGG | 0.521458 | 7_2:+79314052 | None:intergenic |
TAATCCAAACCATCATTACA+TGG | 0.521997 | 7_2:+79313886 | None:intergenic |
TCTCTTGAGAAGCTGAATCT+CGG | 0.522455 | 7_2:-79315371 | Msa1080060:CDS |
AAAGGTGAAATAAACCGATT+CGG | 0.523055 | 7_2:+79315582 | None:intergenic |
TGATCATACCCATGTAATGA+TGG | 0.530464 | 7_2:-79313895 | Msa1080060:three_prime_UTR |
GTGTGGAATACTGTCAAGAA+AGG | 0.534546 | 7_2:-79314527 | Msa1080060:CDS |
TGCTTAGAAAGATTTGAAGT+GGG | 0.535088 | 7_2:-79315084 | Msa1080060:CDS |
GGACAAGGATGACAAGGCAC+TGG | 0.535550 | 7_2:-79314312 | Msa1080060:CDS |
TACGTGAAGGATAATGCTAT+TGG | 0.543370 | 7_2:-79314131 | Msa1080060:CDS |
CACTAAAGGGAACACCGAAT+CGG | 0.547540 | 7_2:-79315596 | None:intergenic |
TCCTCAGGATCATATGACTT+AGG | 0.553713 | 7_2:+79314332 | None:intergenic |
AGAAAGCAATTCCAAAGTCT+CGG | 0.562617 | 7_2:-79315280 | Msa1080060:CDS |
TCCTAAGTCATATGATCCTG+AGG | 0.564715 | 7_2:-79314333 | Msa1080060:CDS |
GACATATGCAAGTACTTGAA+AGG | 0.564755 | 7_2:-79314182 | Msa1080060:CDS |
AGGCTTCTTATTGTTCTCCA+AGG | 0.569260 | 7_2:+79314574 | None:intergenic |
GTCATATGATCCTGAGGACA+AGG | 0.573937 | 7_2:-79314327 | Msa1080060:CDS |
GACAAGGATGACAAGGCACT+GGG | 0.585950 | 7_2:-79314311 | Msa1080060:intron |
TTCAATCTATAAAATGTAGA+CGG | 0.589902 | 7_2:+79313666 | None:intergenic |
ATTATGTTACAGTTTACAAG+AGG | 0.597781 | 7_2:-79315134 | Msa1080060:intron |
TCCTGAGGACAAGGATGACA+AGG | 0.614403 | 7_2:-79314318 | Msa1080060:CDS |
CCAAAGTCAAATTCGAACCA+TGG | 0.623759 | 7_2:+79313789 | None:intergenic |
AGATGTTCAGTCCTACGTGA+AGG | 0.650654 | 7_2:-79314144 | Msa1080060:CDS |
TGGAATACTGTCAAGAAAGG+AGG | 0.665630 | 7_2:-79314524 | Msa1080060:CDS |
AATCCAAACCATCATTACAT+GGG | 0.675720 | 7_2:+79313887 | None:intergenic |
GTGACGATATTTGTAATCAG+CGG | 0.676232 | 7_2:+79315256 | None:intergenic |
GCTAACAATTGAGTAAAACA+TGG | 0.686479 | 7_2:-79314041 | Msa1080060:exon |
TGTTGCATAATGCAATGCAG+TGG | 0.711796 | 7_2:-79314010 | Msa1080060:three_prime_UTR |
AATAGCATTATCCTTCACGT+AGG | 0.725400 | 7_2:+79314133 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCATTTTCTTAAATTATTAT+CGG | + | chr7_2:79314261-79314280 | None:intergenic | 10.0% |
!! | CAAATTTAAAAAGAAAATAA+GGG | + | chr7_2:79314395-79314414 | None:intergenic | 10.0% |
!! | TCAAATTTAAAAAGAAAATA+AGG | + | chr7_2:79314396-79314415 | None:intergenic | 10.0% |
!!! | TCATTTTCTTAAATTATTAT+CGG | + | chr7_2:79314261-79314280 | None:intergenic | 10.0% |
!! | CAAATTTAAAAAGAAAATAA+GGG | + | chr7_2:79314395-79314414 | None:intergenic | 10.0% |
!! | TCAAATTTAAAAAGAAAATA+AGG | + | chr7_2:79314396-79314415 | None:intergenic | 10.0% |
!!! | TTGTTTCATACATTTAATTT+AGG | - | chr7_2:79314607-79314626 | Msa1080060:CDS | 15.0% |
!!! | TCTCTAGAAAAATAAAATAT+AGG | + | chr7_2:79314967-79314986 | None:intergenic | 15.0% |
!!! | ATTTTATTTTTCTAGAGATT+TGG | - | chr7_2:79314969-79314988 | Msa1080060:intron | 15.0% |
!!! | TCTAAAATTTTCTTTATTGT+TGG | - | chr7_2:79315314-79315333 | Msa1080060:CDS | 15.0% |
!! | TTATGTATTATAAGATCATT+TGG | - | chr7_2:79315506-79315525 | Msa1080060:exon | 15.0% |
!!! | TTGTTTCATACATTTAATTT+AGG | - | chr7_2:79314607-79314626 | Msa1080060:CDS | 15.0% |
!!! | TCTCTAGAAAAATAAAATAT+AGG | + | chr7_2:79314967-79314986 | None:intergenic | 15.0% |
!!! | ATTTTATTTTTCTAGAGATT+TGG | - | chr7_2:79314969-79314988 | Msa1080060:intron | 15.0% |
!!! | TCTAAAATTTTCTTTATTGT+TGG | - | chr7_2:79315314-79315333 | Msa1080060:CDS | 15.0% |
!! | TTATGTATTATAAGATCATT+TGG | - | chr7_2:79315506-79315525 | Msa1080060:exon | 15.0% |
!! | ATAATAAGCAATTTCTTCTT+AGG | + | chr7_2:79313893-79313912 | None:intergenic | 20.0% |
!! | TATATGTGAGAAACTTATTA+CGG | + | chr7_2:79314012-79314031 | None:intergenic | 20.0% |
!! | TTCATAAATTCTTCACTAAA+TGG | + | chr7_2:79314129-79314148 | None:intergenic | 20.0% |
!! | ATGAATTCAGTTGTAATTAT+AGG | - | chr7_2:79314277-79314296 | Msa1080060:intron | 20.0% |
!!! | ACATATCAAGAAATGATTTT+AGG | + | chr7_2:79314562-79314581 | None:intergenic | 20.0% |
!!! | ATACATTTAATTTAGGATCA+AGG | - | chr7_2:79314614-79314633 | Msa1080060:intron | 20.0% |
!! | GGAAAAATAATTGATGTATT+GGG | + | chr7_2:79314887-79314906 | None:intergenic | 20.0% |
!! | AGGAAAAATAATTGATGTAT+TGG | + | chr7_2:79314888-79314907 | None:intergenic | 20.0% |
!! | ATAATTTGAATAGATCCAAA+TGG | - | chr7_2:79315031-79315050 | Msa1080060:intron | 20.0% |
!!! | TGGATTAAGTTTCTTTTTAA+AGG | - | chr7_2:79315367-79315386 | Msa1080060:CDS | 20.0% |
!! | TTCAATCTATAAAATGTAGA+CGG | + | chr7_2:79315574-79315593 | None:intergenic | 20.0% |
!! | ATAATAAGCAATTTCTTCTT+AGG | + | chr7_2:79313893-79313912 | None:intergenic | 20.0% |
!! | TATATGTGAGAAACTTATTA+CGG | + | chr7_2:79314012-79314031 | None:intergenic | 20.0% |
!! | TTCATAAATTCTTCACTAAA+TGG | + | chr7_2:79314129-79314148 | None:intergenic | 20.0% |
!! | ATGAATTCAGTTGTAATTAT+AGG | - | chr7_2:79314277-79314296 | Msa1080060:intron | 20.0% |
!!! | ACATATCAAGAAATGATTTT+AGG | + | chr7_2:79314562-79314581 | None:intergenic | 20.0% |
!!! | ATACATTTAATTTAGGATCA+AGG | - | chr7_2:79314614-79314633 | Msa1080060:intron | 20.0% |
!! | GGAAAAATAATTGATGTATT+GGG | + | chr7_2:79314887-79314906 | None:intergenic | 20.0% |
!! | AGGAAAAATAATTGATGTAT+TGG | + | chr7_2:79314888-79314907 | None:intergenic | 20.0% |
!! | ATAATTTGAATAGATCCAAA+TGG | - | chr7_2:79315031-79315050 | Msa1080060:intron | 20.0% |
!!! | TGGATTAAGTTTCTTTTTAA+AGG | - | chr7_2:79315367-79315386 | Msa1080060:CDS | 20.0% |
!! | TTCAATCTATAAAATGTAGA+CGG | + | chr7_2:79315574-79315593 | None:intergenic | 20.0% |
! | TTTACTTGCTTTATAACAAG+TGG | + | chr7_2:79313682-79313701 | None:intergenic | 25.0% |
! | TGATACACTTTGCAAAATTA+TGG | + | chr7_2:79313729-79313748 | None:intergenic | 25.0% |
! | AAAAAAGAGAGTTGTAGTTA+TGG | - | chr7_2:79313761-79313780 | Msa1080060:three_prime_UTR | 25.0% |
! | TTGCTTATTATGAACCTTAA+CGG | - | chr7_2:79313902-79313921 | Msa1080060:three_prime_UTR | 25.0% |
! | ATTATGTTACAGTTTACAAG+AGG | - | chr7_2:79314103-79314122 | Msa1080060:CDS | 25.0% |
! | TCTTAAATTATTATCGGTGT+CGG | + | chr7_2:79314255-79314274 | None:intergenic | 25.0% |
! | AAAACAAGCTACTATTTGTT+TGG | - | chr7_2:79314508-79314527 | Msa1080060:CDS | 25.0% |
! | AAACAAGCTACTATTTGTTT+GGG | - | chr7_2:79314509-79314528 | Msa1080060:CDS | 25.0% |
!! | AAAGTATTTGAAGCAGAATA+TGG | + | chr7_2:79314740-79314759 | None:intergenic | 25.0% |
! | AAGAAAAACAAGTGAATTAC+CGG | + | chr7_2:79314800-79314819 | None:intergenic | 25.0% |
! | AGGTGATTCATTATCTTATT+TGG | - | chr7_2:79315387-79315406 | Msa1080060:CDS | 25.0% |
! | GCAATTTATTGTAAAATCCA+TGG | - | chr7_2:79315431-79315450 | Msa1080060:CDS | 25.0% |
! | TTTACTTGCTTTATAACAAG+TGG | + | chr7_2:79313682-79313701 | None:intergenic | 25.0% |
! | TGATACACTTTGCAAAATTA+TGG | + | chr7_2:79313729-79313748 | None:intergenic | 25.0% |
! | AAAAAAGAGAGTTGTAGTTA+TGG | - | chr7_2:79313761-79313780 | Msa1080060:three_prime_UTR | 25.0% |
! | TTGCTTATTATGAACCTTAA+CGG | - | chr7_2:79313902-79313921 | Msa1080060:three_prime_UTR | 25.0% |
! | ATTATGTTACAGTTTACAAG+AGG | - | chr7_2:79314103-79314122 | Msa1080060:CDS | 25.0% |
! | TCTTAAATTATTATCGGTGT+CGG | + | chr7_2:79314255-79314274 | None:intergenic | 25.0% |
! | AAAACAAGCTACTATTTGTT+TGG | - | chr7_2:79314508-79314527 | Msa1080060:CDS | 25.0% |
! | AAACAAGCTACTATTTGTTT+GGG | - | chr7_2:79314509-79314528 | Msa1080060:CDS | 25.0% |
!! | AAAGTATTTGAAGCAGAATA+TGG | + | chr7_2:79314740-79314759 | None:intergenic | 25.0% |
! | AAGAAAAACAAGTGAATTAC+CGG | + | chr7_2:79314800-79314819 | None:intergenic | 25.0% |
! | AGGTGATTCATTATCTTATT+TGG | - | chr7_2:79315387-79315406 | Msa1080060:CDS | 25.0% |
! | GCAATTTATTGTAAAATCCA+TGG | - | chr7_2:79315431-79315450 | Msa1080060:CDS | 25.0% |
AAAGGTGAAATAAACCGATT+CGG | + | chr7_2:79313658-79313677 | None:intergenic | 30.0% | |
TGCTTTATAACAAGTGGAAA+AGG | + | chr7_2:79313676-79313695 | None:intergenic | 30.0% | |
TTTGCAAAGTGTATCAAGAA+TGG | - | chr7_2:79313733-79313752 | Msa1080060:three_prime_UTR | 30.0% | |
! | TGCTTAGAAAGATTTGAAGT+GGG | - | chr7_2:79314153-79314172 | Msa1080060:CDS | 30.0% |
TCAGTTGTAATTATAGGTGT+CGG | - | chr7_2:79314283-79314302 | Msa1080060:intron | 30.0% | |
! | CTGCATTTAGAGTAACAAAA+GGG | + | chr7_2:79314444-79314463 | None:intergenic | 30.0% |
! | TTCAGTTCTTTGAAAAAGAG+AGG | + | chr7_2:79314686-79314705 | None:intergenic | 30.0% |
TCAAAGAACTGAAAAAAGTG+TGG | - | chr7_2:79314693-79314712 | Msa1080060:intron | 30.0% | |
ATACAAGTCTTTCCTTAATC+CGG | - | chr7_2:79314778-79314797 | Msa1080060:intron | 30.0% | |
TCAATTGTTAGCAGTTATAC+GGG | + | chr7_2:79315188-79315207 | None:intergenic | 30.0% | |
CTCAATTGTTAGCAGTTATA+CGG | + | chr7_2:79315189-79315208 | None:intergenic | 30.0% | |
GCTAACAATTGAGTAAAACA+TGG | - | chr7_2:79315196-79315215 | Msa1080060:intron | 30.0% | |
AATCCAAACCATCATTACAT+GGG | + | chr7_2:79315353-79315372 | None:intergenic | 30.0% | |
TAATCCAAACCATCATTACA+TGG | + | chr7_2:79315354-79315373 | None:intergenic | 30.0% | |
AAAGGTGAAATAAACCGATT+CGG | + | chr7_2:79313658-79313677 | None:intergenic | 30.0% | |
TGCTTTATAACAAGTGGAAA+AGG | + | chr7_2:79313676-79313695 | None:intergenic | 30.0% | |
TTTGCAAAGTGTATCAAGAA+TGG | - | chr7_2:79313733-79313752 | Msa1080060:three_prime_UTR | 30.0% | |
! | TGCTTAGAAAGATTTGAAGT+GGG | - | chr7_2:79314153-79314172 | Msa1080060:CDS | 30.0% |
TCAGTTGTAATTATAGGTGT+CGG | - | chr7_2:79314283-79314302 | Msa1080060:intron | 30.0% | |
! | CTGCATTTAGAGTAACAAAA+GGG | + | chr7_2:79314444-79314463 | None:intergenic | 30.0% |
! | TTCAGTTCTTTGAAAAAGAG+AGG | + | chr7_2:79314686-79314705 | None:intergenic | 30.0% |
TCAAAGAACTGAAAAAAGTG+TGG | - | chr7_2:79314693-79314712 | Msa1080060:intron | 30.0% | |
ATACAAGTCTTTCCTTAATC+CGG | - | chr7_2:79314778-79314797 | Msa1080060:intron | 30.0% | |
TCAATTGTTAGCAGTTATAC+GGG | + | chr7_2:79315188-79315207 | None:intergenic | 30.0% | |
CTCAATTGTTAGCAGTTATA+CGG | + | chr7_2:79315189-79315208 | None:intergenic | 30.0% | |
GCTAACAATTGAGTAAAACA+TGG | - | chr7_2:79315196-79315215 | Msa1080060:intron | 30.0% | |
AATCCAAACCATCATTACAT+GGG | + | chr7_2:79315353-79315372 | None:intergenic | 30.0% | |
TAATCCAAACCATCATTACA+TGG | + | chr7_2:79315354-79315373 | None:intergenic | 30.0% | |
! | CTGAACTTTTGTGATCATCA+TGG | + | chr7_2:79313826-79313845 | None:intergenic | 35.0% |
TATGGAGAAGAAATCCGTTA+AGG | + | chr7_2:79313919-79313938 | None:intergenic | 35.0% | |
AGAAAGCAATTCCAAAGTCT+CGG | - | chr7_2:79313957-79313976 | Msa1080060:three_prime_UTR | 35.0% | |
GTGACGATATTTGTAATCAG+CGG | + | chr7_2:79313984-79314003 | None:intergenic | 35.0% | |
CTGCTTAGAAAGATTTGAAG+TGG | - | chr7_2:79314152-79314171 | Msa1080060:CDS | 35.0% | |
! | CCTGCATTTAGAGTAACAAA+AGG | + | chr7_2:79314445-79314464 | None:intergenic | 35.0% |
! | CCTTTTGTTACTCTAAATGC+AGG | - | chr7_2:79314442-79314461 | Msa1080060:intron | 35.0% |
AAATGCAGGCATAATGTTGA+TGG | - | chr7_2:79314456-79314475 | Msa1080060:intron | 35.0% | |
AGCTACTATTTGTTTGGGTA+CGG | - | chr7_2:79314514-79314533 | Msa1080060:CDS | 35.0% | |
CAAGGTAAATGTAGAGATTC+TGG | - | chr7_2:79314632-79314651 | Msa1080060:intron | 35.0% | |
!! | AGATTCTGGCTTTAAATCCT+TGG | - | chr7_2:79314646-79314665 | Msa1080060:intron | 35.0% |
GGATTAAGGAAAGACTTGTA+TGG | + | chr7_2:79314779-79314798 | None:intergenic | 35.0% | |
ACAAGTGAATTACCGGATTA+AGG | + | chr7_2:79314793-79314812 | None:intergenic | 35.0% | |
TACTTGCATATGTCACCATT+TGG | + | chr7_2:79315049-79315068 | None:intergenic | 35.0% | |
GACATATGCAAGTACTTGAA+AGG | - | chr7_2:79315055-79315074 | Msa1080060:intron | 35.0% | |
AATAGCATTATCCTTCACGT+AGG | + | chr7_2:79315107-79315126 | None:intergenic | 35.0% | |
TACGTGAAGGATAATGCTAT+TGG | - | chr7_2:79315106-79315125 | Msa1080060:CDS | 35.0% | |
TTACAACATCTCATCCTGAT+TGG | - | chr7_2:79315140-79315159 | Msa1080060:intron | 35.0% | |
TACAACATCTCATCCTGATT+GGG | - | chr7_2:79315141-79315160 | Msa1080060:intron | 35.0% | |
TGATCATACCCATGTAATGA+TGG | - | chr7_2:79315342-79315361 | Msa1080060:CDS | 35.0% | |
ATACCCATGTAATGATGGTT+TGG | - | chr7_2:79315347-79315366 | Msa1080060:CDS | 35.0% | |
! | CATGGTTCGAATTTGACTTT+GGG | - | chr7_2:79315449-79315468 | Msa1080060:CDS | 35.0% |
! | CTGAACTTTTGTGATCATCA+TGG | + | chr7_2:79313826-79313845 | None:intergenic | 35.0% |
TATGGAGAAGAAATCCGTTA+AGG | + | chr7_2:79313919-79313938 | None:intergenic | 35.0% | |
AGAAAGCAATTCCAAAGTCT+CGG | - | chr7_2:79313957-79313976 | Msa1080060:three_prime_UTR | 35.0% | |
GTGACGATATTTGTAATCAG+CGG | + | chr7_2:79313984-79314003 | None:intergenic | 35.0% | |
CTGCTTAGAAAGATTTGAAG+TGG | - | chr7_2:79314152-79314171 | Msa1080060:CDS | 35.0% | |
! | CCTGCATTTAGAGTAACAAA+AGG | + | chr7_2:79314445-79314464 | None:intergenic | 35.0% |
! | CCTTTTGTTACTCTAAATGC+AGG | - | chr7_2:79314442-79314461 | Msa1080060:intron | 35.0% |
AAATGCAGGCATAATGTTGA+TGG | - | chr7_2:79314456-79314475 | Msa1080060:intron | 35.0% | |
AGCTACTATTTGTTTGGGTA+CGG | - | chr7_2:79314514-79314533 | Msa1080060:CDS | 35.0% | |
CAAGGTAAATGTAGAGATTC+TGG | - | chr7_2:79314632-79314651 | Msa1080060:intron | 35.0% | |
!! | AGATTCTGGCTTTAAATCCT+TGG | - | chr7_2:79314646-79314665 | Msa1080060:intron | 35.0% |
GGATTAAGGAAAGACTTGTA+TGG | + | chr7_2:79314779-79314798 | None:intergenic | 35.0% | |
ACAAGTGAATTACCGGATTA+AGG | + | chr7_2:79314793-79314812 | None:intergenic | 35.0% | |
TACTTGCATATGTCACCATT+TGG | + | chr7_2:79315049-79315068 | None:intergenic | 35.0% | |
GACATATGCAAGTACTTGAA+AGG | - | chr7_2:79315055-79315074 | Msa1080060:intron | 35.0% | |
AATAGCATTATCCTTCACGT+AGG | + | chr7_2:79315107-79315126 | None:intergenic | 35.0% | |
TACGTGAAGGATAATGCTAT+TGG | - | chr7_2:79315106-79315125 | Msa1080060:CDS | 35.0% | |
TTACAACATCTCATCCTGAT+TGG | - | chr7_2:79315140-79315159 | Msa1080060:intron | 35.0% | |
TACAACATCTCATCCTGATT+GGG | - | chr7_2:79315141-79315160 | Msa1080060:intron | 35.0% | |
TGATCATACCCATGTAATGA+TGG | - | chr7_2:79315342-79315361 | Msa1080060:CDS | 35.0% | |
ATACCCATGTAATGATGGTT+TGG | - | chr7_2:79315347-79315366 | Msa1080060:CDS | 35.0% | |
! | CATGGTTCGAATTTGACTTT+GGG | - | chr7_2:79315449-79315468 | Msa1080060:CDS | 35.0% |
AAGTTCAGCAGAACCAGAAT+TGG | - | chr7_2:79313838-79313857 | Msa1080060:three_prime_UTR | 40.0% | |
AGTTCAGCAGAACCAGAATT+GGG | - | chr7_2:79313839-79313858 | Msa1080060:three_prime_UTR | 40.0% | |
TCAAGAGAAAGACCCAATTC+TGG | + | chr7_2:79313854-79313873 | None:intergenic | 40.0% | |
TCTCTTGAGAAGCTGAATCT+CGG | - | chr7_2:79313866-79313885 | Msa1080060:three_prime_UTR | 40.0% | |
! | AAAGATTTGAAGTGGGTGTC+TGG | - | chr7_2:79314160-79314179 | Msa1080060:CDS | 40.0% |
AACACTCTTCCTATGAAGCA+CGG | - | chr7_2:79314207-79314226 | Msa1080060:intron | 40.0% | |
AGGCTTCTTATTGTTCTCCA+AGG | + | chr7_2:79314666-79314685 | None:intergenic | 40.0% | |
GTGTGGAATACTGTCAAGAA+AGG | - | chr7_2:79314710-79314729 | Msa1080060:intron | 40.0% | |
TGGAATACTGTCAAGAAAGG+AGG | - | chr7_2:79314713-79314732 | Msa1080060:intron | 40.0% | |
ATGTATTGGGCTGCAATTTG+AGG | + | chr7_2:79314874-79314893 | None:intergenic | 40.0% | |
TCCTAAGTCATATGATCCTG+AGG | - | chr7_2:79314904-79314923 | Msa1080060:intron | 40.0% | |
TCCTCAGGATCATATGACTT+AGG | + | chr7_2:79314908-79314927 | None:intergenic | 40.0% | |
GGATGAGATGTTGTAATTGC+TGG | + | chr7_2:79315136-79315155 | None:intergenic | 40.0% | |
TGTTGCATAATGCAATGCAG+TGG | - | chr7_2:79315227-79315246 | Msa1080060:intron | 40.0% | |
CCAAAGTCAAATTCGAACCA+TGG | + | chr7_2:79315451-79315470 | None:intergenic | 40.0% | |
! | CCATGGTTCGAATTTGACTT+TGG | - | chr7_2:79315448-79315467 | Msa1080060:CDS | 40.0% |
AAGTTCAGCAGAACCAGAAT+TGG | - | chr7_2:79313838-79313857 | Msa1080060:three_prime_UTR | 40.0% | |
AGTTCAGCAGAACCAGAATT+GGG | - | chr7_2:79313839-79313858 | Msa1080060:three_prime_UTR | 40.0% | |
TCAAGAGAAAGACCCAATTC+TGG | + | chr7_2:79313854-79313873 | None:intergenic | 40.0% | |
TCTCTTGAGAAGCTGAATCT+CGG | - | chr7_2:79313866-79313885 | Msa1080060:three_prime_UTR | 40.0% | |
! | AAAGATTTGAAGTGGGTGTC+TGG | - | chr7_2:79314160-79314179 | Msa1080060:CDS | 40.0% |
AACACTCTTCCTATGAAGCA+CGG | - | chr7_2:79314207-79314226 | Msa1080060:intron | 40.0% | |
AGGCTTCTTATTGTTCTCCA+AGG | + | chr7_2:79314666-79314685 | None:intergenic | 40.0% | |
GTGTGGAATACTGTCAAGAA+AGG | - | chr7_2:79314710-79314729 | Msa1080060:intron | 40.0% | |
TGGAATACTGTCAAGAAAGG+AGG | - | chr7_2:79314713-79314732 | Msa1080060:intron | 40.0% | |
ATGTATTGGGCTGCAATTTG+AGG | + | chr7_2:79314874-79314893 | None:intergenic | 40.0% | |
TCCTAAGTCATATGATCCTG+AGG | - | chr7_2:79314904-79314923 | Msa1080060:intron | 40.0% | |
TCCTCAGGATCATATGACTT+AGG | + | chr7_2:79314908-79314927 | None:intergenic | 40.0% | |
GGATGAGATGTTGTAATTGC+TGG | + | chr7_2:79315136-79315155 | None:intergenic | 40.0% | |
TGTTGCATAATGCAATGCAG+TGG | - | chr7_2:79315227-79315246 | Msa1080060:intron | 40.0% | |
CCAAAGTCAAATTCGAACCA+TGG | + | chr7_2:79315451-79315470 | None:intergenic | 40.0% | |
! | CCATGGTTCGAATTTGACTT+TGG | - | chr7_2:79315448-79315467 | Msa1080060:CDS | 40.0% |
TATGAAGCACGAACACTCCT+CGG | + | chr7_2:79314345-79314364 | None:intergenic | 45.0% | |
TTTCGAATCGCCAATAGCAC+AGG | + | chr7_2:79314490-79314509 | None:intergenic | 45.0% | |
GTCATATGATCCTGAGGACA+AGG | - | chr7_2:79314910-79314929 | Msa1080060:intron | 45.0% | |
TTGAAAGGAGTAGCTGAAGC+TGG | - | chr7_2:79315070-79315089 | Msa1080060:CDS | 45.0% | |
AGATGTTCAGTCCTACGTGA+AGG | - | chr7_2:79315093-79315112 | Msa1080060:CDS | 45.0% | |
GGAACGAACACGAGAATAGA+AGG | + | chr7_2:79315167-79315186 | None:intergenic | 45.0% | |
TATGAAGCACGAACACTCCT+CGG | + | chr7_2:79314345-79314364 | None:intergenic | 45.0% | |
TTTCGAATCGCCAATAGCAC+AGG | + | chr7_2:79314490-79314509 | None:intergenic | 45.0% | |
GTCATATGATCCTGAGGACA+AGG | - | chr7_2:79314910-79314929 | Msa1080060:intron | 45.0% | |
TTGAAAGGAGTAGCTGAAGC+TGG | - | chr7_2:79315070-79315089 | Msa1080060:CDS | 45.0% | |
AGATGTTCAGTCCTACGTGA+AGG | - | chr7_2:79315093-79315112 | Msa1080060:CDS | 45.0% | |
GGAACGAACACGAGAATAGA+AGG | + | chr7_2:79315167-79315186 | None:intergenic | 45.0% | |
TGTCAGTGACACGAGCTCTA+TGG | + | chr7_2:79313937-79313956 | None:intergenic | 50.0% | |
TAATCAGCGGTCCGAGACTT+TGG | + | chr7_2:79313971-79313990 | None:intergenic | 50.0% | |
TATGAAGCACGGACACGACA+CGG | - | chr7_2:79314218-79314237 | Msa1080060:intron | 50.0% | |
!! | TATTATCGGTGTCGGCGTGT+GGG | + | chr7_2:79314247-79314266 | None:intergenic | 50.0% |
!! | TTATTATCGGTGTCGGCGTG+TGG | + | chr7_2:79314248-79314267 | None:intergenic | 50.0% |
GATTAGGTATGTCCCGGTGT+CGG | + | chr7_2:79314323-79314342 | None:intergenic | 50.0% | |
! | TCCTCGGATTAGGTATGTCC+CGG | + | chr7_2:79314329-79314348 | None:intergenic | 50.0% |
GGTGCTTTAGCCTGTGCTAT+TGG | - | chr7_2:79314477-79314496 | Msa1080060:CDS | 50.0% | |
TCCTGAGGACAAGGATGACA+AGG | - | chr7_2:79314919-79314938 | Msa1080060:intron | 50.0% | |
! | GACAAGGATGACAAGGCACT+GGG | - | chr7_2:79314926-79314945 | Msa1080060:intron | 50.0% |
CGAGAATAGAAGGCCCAATC+AGG | + | chr7_2:79315157-79315176 | None:intergenic | 50.0% | |
TGTCAGTGACACGAGCTCTA+TGG | + | chr7_2:79313937-79313956 | None:intergenic | 50.0% | |
TAATCAGCGGTCCGAGACTT+TGG | + | chr7_2:79313971-79313990 | None:intergenic | 50.0% | |
TATGAAGCACGGACACGACA+CGG | - | chr7_2:79314218-79314237 | Msa1080060:intron | 50.0% | |
!! | TATTATCGGTGTCGGCGTGT+GGG | + | chr7_2:79314247-79314266 | None:intergenic | 50.0% |
!! | TTATTATCGGTGTCGGCGTG+TGG | + | chr7_2:79314248-79314267 | None:intergenic | 50.0% |
GATTAGGTATGTCCCGGTGT+CGG | + | chr7_2:79314323-79314342 | None:intergenic | 50.0% | |
! | TCCTCGGATTAGGTATGTCC+CGG | + | chr7_2:79314329-79314348 | None:intergenic | 50.0% |
GGTGCTTTAGCCTGTGCTAT+TGG | - | chr7_2:79314477-79314496 | Msa1080060:CDS | 50.0% | |
TCCTGAGGACAAGGATGACA+AGG | - | chr7_2:79314919-79314938 | Msa1080060:intron | 50.0% | |
! | GACAAGGATGACAAGGCACT+GGG | - | chr7_2:79314926-79314945 | Msa1080060:intron | 50.0% |
CGAGAATAGAAGGCCCAATC+AGG | + | chr7_2:79315157-79315176 | None:intergenic | 50.0% | |
! | GGGTGTCTGGTCTTCTGCAA+TGG | - | chr7_2:79314173-79314192 | Msa1080060:CDS | 55.0% |
GTGTCGTGTCCGTGCTTCAT+AGG | + | chr7_2:79314219-79314238 | None:intergenic | 55.0% | |
ACCGGGACATACCTAATCCG+AGG | - | chr7_2:79314325-79314344 | Msa1080060:CDS | 55.0% | |
GCACGAACACTCCTCGGATT+AGG | + | chr7_2:79314339-79314358 | None:intergenic | 55.0% | |
GCCTTGTCATCCTTGTCCTC+AGG | + | chr7_2:79314923-79314942 | None:intergenic | 55.0% | |
GGACAAGGATGACAAGGCAC+TGG | - | chr7_2:79314925-79314944 | Msa1080060:intron | 55.0% | |
! | GGGTGTCTGGTCTTCTGCAA+TGG | - | chr7_2:79314173-79314192 | Msa1080060:CDS | 55.0% |
GTGTCGTGTCCGTGCTTCAT+AGG | + | chr7_2:79314219-79314238 | None:intergenic | 55.0% | |
ACCGGGACATACCTAATCCG+AGG | - | chr7_2:79314325-79314344 | Msa1080060:CDS | 55.0% | |
GCACGAACACTCCTCGGATT+AGG | + | chr7_2:79314339-79314358 | None:intergenic | 55.0% | |
GCCTTGTCATCCTTGTCCTC+AGG | + | chr7_2:79314923-79314942 | None:intergenic | 55.0% | |
GGACAAGGATGACAAGGCAC+TGG | - | chr7_2:79314925-79314944 | Msa1080060:intron | 55.0% | |
!! | CACCGACTCGTATCCGACAC+CGG | - | chr7_2:79314307-79314326 | Msa1080060:intron | 60.0% |
!! | ACCGACTCGTATCCGACACC+GGG | - | chr7_2:79314308-79314327 | Msa1080060:intron | 60.0% |
! | TCCCGGTGTCGGATACGAGT+CGG | + | chr7_2:79314312-79314331 | None:intergenic | 60.0% |
!! | CACCGACTCGTATCCGACAC+CGG | - | chr7_2:79314307-79314326 | Msa1080060:intron | 60.0% |
!! | ACCGACTCGTATCCGACACC+GGG | - | chr7_2:79314308-79314327 | Msa1080060:intron | 60.0% |
! | TCCCGGTGTCGGATACGAGT+CGG | + | chr7_2:79314312-79314331 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 79313655 | 79315604 | 79313655 | ID=Msa1080060;Name=Msa1080060 |
chr7_2 | mRNA | 79313655 | 79315604 | 79313655 | ID=Msa1080060-mRNA-1;Parent=Msa1080060;Name=Msa1080060-mRNA-1;_AED=0.34;_eAED=0.34;_QI=97|1|1|1|1|1|6|397|268 |
chr7_2 | exon | 79313655 | 79314215 | 79313655 | ID=Msa1080060-mRNA-1:exon:19973;Parent=Msa1080060-mRNA-1 |
chr7_2 | exon | 79314312 | 79314375 | 79314312 | ID=Msa1080060-mRNA-1:exon:19972;Parent=Msa1080060-mRNA-1 |
chr7_2 | exon | 79314460 | 79314630 | 79314460 | ID=Msa1080060-mRNA-1:exon:19971;Parent=Msa1080060-mRNA-1 |
chr7_2 | exon | 79314729 | 79314795 | 79314729 | ID=Msa1080060-mRNA-1:exon:19970;Parent=Msa1080060-mRNA-1 |
chr7_2 | exon | 79315063 | 79315144 | 79315063 | ID=Msa1080060-mRNA-1:exon:19969;Parent=Msa1080060-mRNA-1 |
chr7_2 | exon | 79315249 | 79315604 | 79315249 | ID=Msa1080060-mRNA-1:exon:19968;Parent=Msa1080060-mRNA-1 |
chr7_2 | five_prime_UTR | 79315508 | 79315604 | 79315508 | ID=Msa1080060-mRNA-1:five_prime_utr;Parent=Msa1080060-mRNA-1 |
chr7_2 | CDS | 79315249 | 79315507 | 79315249 | ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1 |
chr7_2 | CDS | 79315063 | 79315144 | 79315063 | ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1 |
chr7_2 | CDS | 79314729 | 79314795 | 79314729 | ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1 |
chr7_2 | CDS | 79314460 | 79314630 | 79314460 | ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1 |
chr7_2 | CDS | 79314312 | 79314375 | 79314312 | ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1 |
chr7_2 | CDS | 79314052 | 79314215 | 79314052 | ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1 |
chr7_2 | three_prime_UTR | 79313655 | 79314051 | 79313655 | ID=Msa1080060-mRNA-1:three_prime_utr;Parent=Msa1080060-mRNA-1 |
Gene Sequence |
Protein sequence |