AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080060 MtrunA17_Chr7g0265691 93.657 268 11 1 1 268 1 262 0.0 508
Msa1080060 MtrunA17_Chr7g0265701 82.937 252 42 1 13 264 1 251 3.59e-153 427
Msa1080060 MtrunA17_Chr7g0265581 70.681 191 53 3 72 260 18 207 1.29e-93 275
Msa1080060 MtrunA17_Chr7g0255231 70.068 147 32 5 57 193 76 220 4.09e-61 192
Msa1080060 MtrunA17_Chr7g0219531 40.000 235 128 4 39 266 32 260 4.33e-56 181
Msa1080060 MtrunA17_Chr7g0219541 39.732 224 124 4 48 266 49 266 1.58e-53 174
Msa1080060 MtrunA17_Chr2g0308461 39.381 226 129 3 48 268 281 503 4.31e-50 172
Msa1080060 MtrunA17_Chr7g0219551 36.759 253 145 6 18 264 61 304 7.13e-47 158
Msa1080060 MtrunA17_Chr7g0219521 40.741 189 104 3 33 214 28 215 6.48e-43 145
Msa1080060 MtrunA17_Chr7g0265681 79.592 49 10 0 88 136 25 73 4.56e-23 90.1
Msa1080060 MtrunA17_Chr7g0265671 62.500 48 18 0 213 260 51 98 4.47e-18 77.8
Msa1080060 MtrunA17_Chr7g0265671 72.917 48 10 2 97 141 1 48 3.51e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080060 AT2G36540.1 48.462 260 111 6 14 265 5 249 1.17e-65 205
Msa1080060 AT3G29760.5 41.000 200 108 3 66 260 321 515 6.19e-45 159
Msa1080060 AT3G29760.3 41.000 200 108 3 66 260 321 515 6.19e-45 159
Msa1080060 AT2G36550.1 51.145 131 60 2 135 265 15 141 7.16e-44 145
Msa1080060 AT4G26190.2 38.249 217 122 5 49 260 843 1052 1.29e-41 152
Msa1080060 AT4G26190.5 38.249 217 122 5 49 260 843 1052 1.29e-41 152
Msa1080060 AT4G26190.3 38.249 217 122 5 49 260 843 1052 1.29e-41 152
Msa1080060 AT4G26190.1 38.249 217 122 5 49 260 843 1052 1.29e-41 152
Msa1080060 AT4G26190.4 38.249 217 122 5 49 260 843 1052 1.29e-41 152
Msa1080060 AT3G29760.2 36.283 226 108 4 66 260 321 541 1.98e-39 144
Msa1080060 AT3G29760.1 42.105 133 68 2 66 193 321 449 1.03e-27 111
Msa1080060 AT3G29760.4 43.836 73 37 1 66 138 321 389 1.68e-12 67.4

Find 72 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTGATTCATTATCTTATT+TGG 0.131323 7_2:-79313850 Msa1080060:three_prime_UTR
TTCATAAATTCTTCACTAAA+TGG 0.185254 7_2:+79315111 None:intergenic
TGATACACTTTGCAAAATTA+TGG 0.203331 7_2:+79315511 None:intergenic
CTCAATTGTTAGCAGTTATA+CGG 0.218202 7_2:+79314051 None:intergenic
AAAACAAGCTACTATTTGTT+TGG 0.265573 7_2:-79314729 Msa1080060:CDS
ATAATAAGCAATTTCTTCTT+AGG 0.282304 7_2:+79315347 None:intergenic
ACAAGTGAATTACCGGATTA+AGG 0.285626 7_2:+79314447 None:intergenic
CAAGGTAAATGTAGAGATTC+TGG 0.299926 7_2:-79314605 Msa1080060:CDS
TTGCTTATTATGAACCTTAA+CGG 0.337126 7_2:-79315335 Msa1080060:CDS
TCAAGAGAAAGACCCAATTC+TGG 0.351025 7_2:+79315386 None:intergenic
CCATGGTTCGAATTTGACTT+TGG 0.358354 7_2:-79313789 Msa1080060:three_prime_UTR
AAACAAGCTACTATTTGTTT+GGG 0.367088 7_2:-79314728 Msa1080060:intron
TTATGTATTATAAGATCATT+TGG 0.370881 7_2:-79313731 Msa1080060:three_prime_UTR
GGTGCTTTAGCCTGTGCTAT+TGG 0.376162 7_2:-79314760 Msa1080060:CDS
CATGGTTCGAATTTGACTTT+GGG 0.376887 7_2:-79313788 Msa1080060:three_prime_UTR
AGATTCTGGCTTTAAATCCT+TGG 0.379049 7_2:-79314591 Msa1080060:CDS
AAGTTCAGCAGAACCAGAAT+TGG 0.383508 7_2:-79315399 Msa1080060:CDS
TGTCAGTGACACGAGCTCTA+TGG 0.392097 7_2:+79315303 None:intergenic
TAATCAGCGGTCCGAGACTT+TGG 0.398239 7_2:+79315269 None:intergenic
TACTTGCATATGTCACCATT+TGG 0.400960 7_2:+79314191 None:intergenic
ATACCCATGTAATGATGGTT+TGG 0.409691 7_2:-79313890 Msa1080060:three_prime_UTR
TTTGCAAAGTGTATCAAGAA+TGG 0.412015 7_2:-79315504 Msa1080060:exon
AAAGTATTTGAAGCAGAATA+TGG 0.421185 7_2:+79314500 None:intergenic
GGAACGAACACGAGAATAGA+AGG 0.423928 7_2:+79314073 None:intergenic
ATACATTTAATTTAGGATCA+AGG 0.424490 7_2:-79314623 Msa1080060:intron
AAAGATTTGAAGTGGGTGTC+TGG 0.432400 7_2:-79315077 Msa1080060:CDS
GGATGAGATGTTGTAATTGC+TGG 0.437119 7_2:+79314104 None:intergenic
ATACAAGTCTTTCCTTAATC+CGG 0.442145 7_2:-79314459 Msa1080060:intron
TTACAACATCTCATCCTGAT+TGG 0.449737 7_2:-79314097 Msa1080060:CDS
GCCTTGTCATCCTTGTCCTC+AGG 0.462508 7_2:+79314317 None:intergenic
CGAGAATAGAAGGCCCAATC+AGG 0.463741 7_2:+79314083 None:intergenic
TACAACATCTCATCCTGATT+GGG 0.472152 7_2:-79314096 Msa1080060:CDS
TGCTTTATAACAAGTGGAAA+AGG 0.475081 7_2:+79315564 None:intergenic
TTTACTTGCTTTATAACAAG+TGG 0.489937 7_2:+79315558 None:intergenic
GCAATTTATTGTAAAATCCA+TGG 0.492025 7_2:-79313806 Msa1080060:three_prime_UTR
GGATTAAGGAAAGACTTGTA+TGG 0.503951 7_2:+79314461 None:intergenic
TATGGAGAAGAAATCCGTTA+AGG 0.508168 7_2:+79315321 None:intergenic
CTGCTTAGAAAGATTTGAAG+TGG 0.511785 7_2:-79315085 Msa1080060:CDS
ATAATTTGAATAGATCCAAA+TGG 0.511910 7_2:-79314206 Msa1080060:intron
GGGTGTCTGGTCTTCTGCAA+TGG 0.513381 7_2:-79315064 Msa1080060:CDS
AGTTCAGCAGAACCAGAATT+GGG 0.514991 7_2:-79315398 Msa1080060:CDS
TTGAAAGGAGTAGCTGAAGC+TGG 0.516919 7_2:-79314167 Msa1080060:CDS
TTTCGAATCGCCAATAGCAC+AGG 0.520821 7_2:+79314750 None:intergenic
AAATGCAGGCATAATGTTGA+TGG 0.521362 7_2:-79314781 Msa1080060:intron
TCAATTGTTAGCAGTTATAC+GGG 0.521458 7_2:+79314052 None:intergenic
TAATCCAAACCATCATTACA+TGG 0.521997 7_2:+79313886 None:intergenic
TCTCTTGAGAAGCTGAATCT+CGG 0.522455 7_2:-79315371 Msa1080060:CDS
AAAGGTGAAATAAACCGATT+CGG 0.523055 7_2:+79315582 None:intergenic
TGATCATACCCATGTAATGA+TGG 0.530464 7_2:-79313895 Msa1080060:three_prime_UTR
GTGTGGAATACTGTCAAGAA+AGG 0.534546 7_2:-79314527 Msa1080060:CDS
TGCTTAGAAAGATTTGAAGT+GGG 0.535088 7_2:-79315084 Msa1080060:CDS
GGACAAGGATGACAAGGCAC+TGG 0.535550 7_2:-79314312 Msa1080060:CDS
TACGTGAAGGATAATGCTAT+TGG 0.543370 7_2:-79314131 Msa1080060:CDS
CACTAAAGGGAACACCGAAT+CGG 0.547540 7_2:-79315596 None:intergenic
TCCTCAGGATCATATGACTT+AGG 0.553713 7_2:+79314332 None:intergenic
AGAAAGCAATTCCAAAGTCT+CGG 0.562617 7_2:-79315280 Msa1080060:CDS
TCCTAAGTCATATGATCCTG+AGG 0.564715 7_2:-79314333 Msa1080060:CDS
GACATATGCAAGTACTTGAA+AGG 0.564755 7_2:-79314182 Msa1080060:CDS
AGGCTTCTTATTGTTCTCCA+AGG 0.569260 7_2:+79314574 None:intergenic
GTCATATGATCCTGAGGACA+AGG 0.573937 7_2:-79314327 Msa1080060:CDS
GACAAGGATGACAAGGCACT+GGG 0.585950 7_2:-79314311 Msa1080060:intron
TTCAATCTATAAAATGTAGA+CGG 0.589902 7_2:+79313666 None:intergenic
ATTATGTTACAGTTTACAAG+AGG 0.597781 7_2:-79315134 Msa1080060:intron
TCCTGAGGACAAGGATGACA+AGG 0.614403 7_2:-79314318 Msa1080060:CDS
CCAAAGTCAAATTCGAACCA+TGG 0.623759 7_2:+79313789 None:intergenic
AGATGTTCAGTCCTACGTGA+AGG 0.650654 7_2:-79314144 Msa1080060:CDS
TGGAATACTGTCAAGAAAGG+AGG 0.665630 7_2:-79314524 Msa1080060:CDS
AATCCAAACCATCATTACAT+GGG 0.675720 7_2:+79313887 None:intergenic
GTGACGATATTTGTAATCAG+CGG 0.676232 7_2:+79315256 None:intergenic
GCTAACAATTGAGTAAAACA+TGG 0.686479 7_2:-79314041 Msa1080060:exon
TGTTGCATAATGCAATGCAG+TGG 0.711796 7_2:-79314010 Msa1080060:three_prime_UTR
AATAGCATTATCCTTCACGT+AGG 0.725400 7_2:+79314133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTTAAATTATTAT+CGG + chr7_2:79314261-79314280 None:intergenic 10.0%
!! CAAATTTAAAAAGAAAATAA+GGG + chr7_2:79314395-79314414 None:intergenic 10.0%
!! TCAAATTTAAAAAGAAAATA+AGG + chr7_2:79314396-79314415 None:intergenic 10.0%
!!! TCATTTTCTTAAATTATTAT+CGG + chr7_2:79314261-79314280 None:intergenic 10.0%
!! CAAATTTAAAAAGAAAATAA+GGG + chr7_2:79314395-79314414 None:intergenic 10.0%
!! TCAAATTTAAAAAGAAAATA+AGG + chr7_2:79314396-79314415 None:intergenic 10.0%
!!! TTGTTTCATACATTTAATTT+AGG - chr7_2:79314607-79314626 Msa1080060:CDS 15.0%
!!! TCTCTAGAAAAATAAAATAT+AGG + chr7_2:79314967-79314986 None:intergenic 15.0%
!!! ATTTTATTTTTCTAGAGATT+TGG - chr7_2:79314969-79314988 Msa1080060:intron 15.0%
!!! TCTAAAATTTTCTTTATTGT+TGG - chr7_2:79315314-79315333 Msa1080060:CDS 15.0%
!! TTATGTATTATAAGATCATT+TGG - chr7_2:79315506-79315525 Msa1080060:exon 15.0%
!!! TTGTTTCATACATTTAATTT+AGG - chr7_2:79314607-79314626 Msa1080060:CDS 15.0%
!!! TCTCTAGAAAAATAAAATAT+AGG + chr7_2:79314967-79314986 None:intergenic 15.0%
!!! ATTTTATTTTTCTAGAGATT+TGG - chr7_2:79314969-79314988 Msa1080060:intron 15.0%
!!! TCTAAAATTTTCTTTATTGT+TGG - chr7_2:79315314-79315333 Msa1080060:CDS 15.0%
!! TTATGTATTATAAGATCATT+TGG - chr7_2:79315506-79315525 Msa1080060:exon 15.0%
!! ATAATAAGCAATTTCTTCTT+AGG + chr7_2:79313893-79313912 None:intergenic 20.0%
!! TATATGTGAGAAACTTATTA+CGG + chr7_2:79314012-79314031 None:intergenic 20.0%
!! TTCATAAATTCTTCACTAAA+TGG + chr7_2:79314129-79314148 None:intergenic 20.0%
!! ATGAATTCAGTTGTAATTAT+AGG - chr7_2:79314277-79314296 Msa1080060:intron 20.0%
!!! ACATATCAAGAAATGATTTT+AGG + chr7_2:79314562-79314581 None:intergenic 20.0%
!!! ATACATTTAATTTAGGATCA+AGG - chr7_2:79314614-79314633 Msa1080060:intron 20.0%
!! GGAAAAATAATTGATGTATT+GGG + chr7_2:79314887-79314906 None:intergenic 20.0%
!! AGGAAAAATAATTGATGTAT+TGG + chr7_2:79314888-79314907 None:intergenic 20.0%
!! ATAATTTGAATAGATCCAAA+TGG - chr7_2:79315031-79315050 Msa1080060:intron 20.0%
!!! TGGATTAAGTTTCTTTTTAA+AGG - chr7_2:79315367-79315386 Msa1080060:CDS 20.0%
!! TTCAATCTATAAAATGTAGA+CGG + chr7_2:79315574-79315593 None:intergenic 20.0%
!! ATAATAAGCAATTTCTTCTT+AGG + chr7_2:79313893-79313912 None:intergenic 20.0%
!! TATATGTGAGAAACTTATTA+CGG + chr7_2:79314012-79314031 None:intergenic 20.0%
!! TTCATAAATTCTTCACTAAA+TGG + chr7_2:79314129-79314148 None:intergenic 20.0%
!! ATGAATTCAGTTGTAATTAT+AGG - chr7_2:79314277-79314296 Msa1080060:intron 20.0%
!!! ACATATCAAGAAATGATTTT+AGG + chr7_2:79314562-79314581 None:intergenic 20.0%
!!! ATACATTTAATTTAGGATCA+AGG - chr7_2:79314614-79314633 Msa1080060:intron 20.0%
!! GGAAAAATAATTGATGTATT+GGG + chr7_2:79314887-79314906 None:intergenic 20.0%
!! AGGAAAAATAATTGATGTAT+TGG + chr7_2:79314888-79314907 None:intergenic 20.0%
!! ATAATTTGAATAGATCCAAA+TGG - chr7_2:79315031-79315050 Msa1080060:intron 20.0%
!!! TGGATTAAGTTTCTTTTTAA+AGG - chr7_2:79315367-79315386 Msa1080060:CDS 20.0%
!! TTCAATCTATAAAATGTAGA+CGG + chr7_2:79315574-79315593 None:intergenic 20.0%
! TTTACTTGCTTTATAACAAG+TGG + chr7_2:79313682-79313701 None:intergenic 25.0%
! TGATACACTTTGCAAAATTA+TGG + chr7_2:79313729-79313748 None:intergenic 25.0%
! AAAAAAGAGAGTTGTAGTTA+TGG - chr7_2:79313761-79313780 Msa1080060:three_prime_UTR 25.0%
! TTGCTTATTATGAACCTTAA+CGG - chr7_2:79313902-79313921 Msa1080060:three_prime_UTR 25.0%
! ATTATGTTACAGTTTACAAG+AGG - chr7_2:79314103-79314122 Msa1080060:CDS 25.0%
! TCTTAAATTATTATCGGTGT+CGG + chr7_2:79314255-79314274 None:intergenic 25.0%
! AAAACAAGCTACTATTTGTT+TGG - chr7_2:79314508-79314527 Msa1080060:CDS 25.0%
! AAACAAGCTACTATTTGTTT+GGG - chr7_2:79314509-79314528 Msa1080060:CDS 25.0%
!! AAAGTATTTGAAGCAGAATA+TGG + chr7_2:79314740-79314759 None:intergenic 25.0%
! AAGAAAAACAAGTGAATTAC+CGG + chr7_2:79314800-79314819 None:intergenic 25.0%
! AGGTGATTCATTATCTTATT+TGG - chr7_2:79315387-79315406 Msa1080060:CDS 25.0%
! GCAATTTATTGTAAAATCCA+TGG - chr7_2:79315431-79315450 Msa1080060:CDS 25.0%
! TTTACTTGCTTTATAACAAG+TGG + chr7_2:79313682-79313701 None:intergenic 25.0%
! TGATACACTTTGCAAAATTA+TGG + chr7_2:79313729-79313748 None:intergenic 25.0%
! AAAAAAGAGAGTTGTAGTTA+TGG - chr7_2:79313761-79313780 Msa1080060:three_prime_UTR 25.0%
! TTGCTTATTATGAACCTTAA+CGG - chr7_2:79313902-79313921 Msa1080060:three_prime_UTR 25.0%
! ATTATGTTACAGTTTACAAG+AGG - chr7_2:79314103-79314122 Msa1080060:CDS 25.0%
! TCTTAAATTATTATCGGTGT+CGG + chr7_2:79314255-79314274 None:intergenic 25.0%
! AAAACAAGCTACTATTTGTT+TGG - chr7_2:79314508-79314527 Msa1080060:CDS 25.0%
! AAACAAGCTACTATTTGTTT+GGG - chr7_2:79314509-79314528 Msa1080060:CDS 25.0%
!! AAAGTATTTGAAGCAGAATA+TGG + chr7_2:79314740-79314759 None:intergenic 25.0%
! AAGAAAAACAAGTGAATTAC+CGG + chr7_2:79314800-79314819 None:intergenic 25.0%
! AGGTGATTCATTATCTTATT+TGG - chr7_2:79315387-79315406 Msa1080060:CDS 25.0%
! GCAATTTATTGTAAAATCCA+TGG - chr7_2:79315431-79315450 Msa1080060:CDS 25.0%
AAAGGTGAAATAAACCGATT+CGG + chr7_2:79313658-79313677 None:intergenic 30.0%
TGCTTTATAACAAGTGGAAA+AGG + chr7_2:79313676-79313695 None:intergenic 30.0%
TTTGCAAAGTGTATCAAGAA+TGG - chr7_2:79313733-79313752 Msa1080060:three_prime_UTR 30.0%
! TGCTTAGAAAGATTTGAAGT+GGG - chr7_2:79314153-79314172 Msa1080060:CDS 30.0%
TCAGTTGTAATTATAGGTGT+CGG - chr7_2:79314283-79314302 Msa1080060:intron 30.0%
! CTGCATTTAGAGTAACAAAA+GGG + chr7_2:79314444-79314463 None:intergenic 30.0%
! TTCAGTTCTTTGAAAAAGAG+AGG + chr7_2:79314686-79314705 None:intergenic 30.0%
TCAAAGAACTGAAAAAAGTG+TGG - chr7_2:79314693-79314712 Msa1080060:intron 30.0%
ATACAAGTCTTTCCTTAATC+CGG - chr7_2:79314778-79314797 Msa1080060:intron 30.0%
TCAATTGTTAGCAGTTATAC+GGG + chr7_2:79315188-79315207 None:intergenic 30.0%
CTCAATTGTTAGCAGTTATA+CGG + chr7_2:79315189-79315208 None:intergenic 30.0%
GCTAACAATTGAGTAAAACA+TGG - chr7_2:79315196-79315215 Msa1080060:intron 30.0%
AATCCAAACCATCATTACAT+GGG + chr7_2:79315353-79315372 None:intergenic 30.0%
TAATCCAAACCATCATTACA+TGG + chr7_2:79315354-79315373 None:intergenic 30.0%
AAAGGTGAAATAAACCGATT+CGG + chr7_2:79313658-79313677 None:intergenic 30.0%
TGCTTTATAACAAGTGGAAA+AGG + chr7_2:79313676-79313695 None:intergenic 30.0%
TTTGCAAAGTGTATCAAGAA+TGG - chr7_2:79313733-79313752 Msa1080060:three_prime_UTR 30.0%
! TGCTTAGAAAGATTTGAAGT+GGG - chr7_2:79314153-79314172 Msa1080060:CDS 30.0%
TCAGTTGTAATTATAGGTGT+CGG - chr7_2:79314283-79314302 Msa1080060:intron 30.0%
! CTGCATTTAGAGTAACAAAA+GGG + chr7_2:79314444-79314463 None:intergenic 30.0%
! TTCAGTTCTTTGAAAAAGAG+AGG + chr7_2:79314686-79314705 None:intergenic 30.0%
TCAAAGAACTGAAAAAAGTG+TGG - chr7_2:79314693-79314712 Msa1080060:intron 30.0%
ATACAAGTCTTTCCTTAATC+CGG - chr7_2:79314778-79314797 Msa1080060:intron 30.0%
TCAATTGTTAGCAGTTATAC+GGG + chr7_2:79315188-79315207 None:intergenic 30.0%
CTCAATTGTTAGCAGTTATA+CGG + chr7_2:79315189-79315208 None:intergenic 30.0%
GCTAACAATTGAGTAAAACA+TGG - chr7_2:79315196-79315215 Msa1080060:intron 30.0%
AATCCAAACCATCATTACAT+GGG + chr7_2:79315353-79315372 None:intergenic 30.0%
TAATCCAAACCATCATTACA+TGG + chr7_2:79315354-79315373 None:intergenic 30.0%
! CTGAACTTTTGTGATCATCA+TGG + chr7_2:79313826-79313845 None:intergenic 35.0%
TATGGAGAAGAAATCCGTTA+AGG + chr7_2:79313919-79313938 None:intergenic 35.0%
AGAAAGCAATTCCAAAGTCT+CGG - chr7_2:79313957-79313976 Msa1080060:three_prime_UTR 35.0%
GTGACGATATTTGTAATCAG+CGG + chr7_2:79313984-79314003 None:intergenic 35.0%
CTGCTTAGAAAGATTTGAAG+TGG - chr7_2:79314152-79314171 Msa1080060:CDS 35.0%
! CCTGCATTTAGAGTAACAAA+AGG + chr7_2:79314445-79314464 None:intergenic 35.0%
! CCTTTTGTTACTCTAAATGC+AGG - chr7_2:79314442-79314461 Msa1080060:intron 35.0%
AAATGCAGGCATAATGTTGA+TGG - chr7_2:79314456-79314475 Msa1080060:intron 35.0%
AGCTACTATTTGTTTGGGTA+CGG - chr7_2:79314514-79314533 Msa1080060:CDS 35.0%
CAAGGTAAATGTAGAGATTC+TGG - chr7_2:79314632-79314651 Msa1080060:intron 35.0%
!! AGATTCTGGCTTTAAATCCT+TGG - chr7_2:79314646-79314665 Msa1080060:intron 35.0%
GGATTAAGGAAAGACTTGTA+TGG + chr7_2:79314779-79314798 None:intergenic 35.0%
ACAAGTGAATTACCGGATTA+AGG + chr7_2:79314793-79314812 None:intergenic 35.0%
TACTTGCATATGTCACCATT+TGG + chr7_2:79315049-79315068 None:intergenic 35.0%
GACATATGCAAGTACTTGAA+AGG - chr7_2:79315055-79315074 Msa1080060:intron 35.0%
AATAGCATTATCCTTCACGT+AGG + chr7_2:79315107-79315126 None:intergenic 35.0%
TACGTGAAGGATAATGCTAT+TGG - chr7_2:79315106-79315125 Msa1080060:CDS 35.0%
TTACAACATCTCATCCTGAT+TGG - chr7_2:79315140-79315159 Msa1080060:intron 35.0%
TACAACATCTCATCCTGATT+GGG - chr7_2:79315141-79315160 Msa1080060:intron 35.0%
TGATCATACCCATGTAATGA+TGG - chr7_2:79315342-79315361 Msa1080060:CDS 35.0%
ATACCCATGTAATGATGGTT+TGG - chr7_2:79315347-79315366 Msa1080060:CDS 35.0%
! CATGGTTCGAATTTGACTTT+GGG - chr7_2:79315449-79315468 Msa1080060:CDS 35.0%
! CTGAACTTTTGTGATCATCA+TGG + chr7_2:79313826-79313845 None:intergenic 35.0%
TATGGAGAAGAAATCCGTTA+AGG + chr7_2:79313919-79313938 None:intergenic 35.0%
AGAAAGCAATTCCAAAGTCT+CGG - chr7_2:79313957-79313976 Msa1080060:three_prime_UTR 35.0%
GTGACGATATTTGTAATCAG+CGG + chr7_2:79313984-79314003 None:intergenic 35.0%
CTGCTTAGAAAGATTTGAAG+TGG - chr7_2:79314152-79314171 Msa1080060:CDS 35.0%
! CCTGCATTTAGAGTAACAAA+AGG + chr7_2:79314445-79314464 None:intergenic 35.0%
! CCTTTTGTTACTCTAAATGC+AGG - chr7_2:79314442-79314461 Msa1080060:intron 35.0%
AAATGCAGGCATAATGTTGA+TGG - chr7_2:79314456-79314475 Msa1080060:intron 35.0%
AGCTACTATTTGTTTGGGTA+CGG - chr7_2:79314514-79314533 Msa1080060:CDS 35.0%
CAAGGTAAATGTAGAGATTC+TGG - chr7_2:79314632-79314651 Msa1080060:intron 35.0%
!! AGATTCTGGCTTTAAATCCT+TGG - chr7_2:79314646-79314665 Msa1080060:intron 35.0%
GGATTAAGGAAAGACTTGTA+TGG + chr7_2:79314779-79314798 None:intergenic 35.0%
ACAAGTGAATTACCGGATTA+AGG + chr7_2:79314793-79314812 None:intergenic 35.0%
TACTTGCATATGTCACCATT+TGG + chr7_2:79315049-79315068 None:intergenic 35.0%
GACATATGCAAGTACTTGAA+AGG - chr7_2:79315055-79315074 Msa1080060:intron 35.0%
AATAGCATTATCCTTCACGT+AGG + chr7_2:79315107-79315126 None:intergenic 35.0%
TACGTGAAGGATAATGCTAT+TGG - chr7_2:79315106-79315125 Msa1080060:CDS 35.0%
TTACAACATCTCATCCTGAT+TGG - chr7_2:79315140-79315159 Msa1080060:intron 35.0%
TACAACATCTCATCCTGATT+GGG - chr7_2:79315141-79315160 Msa1080060:intron 35.0%
TGATCATACCCATGTAATGA+TGG - chr7_2:79315342-79315361 Msa1080060:CDS 35.0%
ATACCCATGTAATGATGGTT+TGG - chr7_2:79315347-79315366 Msa1080060:CDS 35.0%
! CATGGTTCGAATTTGACTTT+GGG - chr7_2:79315449-79315468 Msa1080060:CDS 35.0%
AAGTTCAGCAGAACCAGAAT+TGG - chr7_2:79313838-79313857 Msa1080060:three_prime_UTR 40.0%
AGTTCAGCAGAACCAGAATT+GGG - chr7_2:79313839-79313858 Msa1080060:three_prime_UTR 40.0%
TCAAGAGAAAGACCCAATTC+TGG + chr7_2:79313854-79313873 None:intergenic 40.0%
TCTCTTGAGAAGCTGAATCT+CGG - chr7_2:79313866-79313885 Msa1080060:three_prime_UTR 40.0%
! AAAGATTTGAAGTGGGTGTC+TGG - chr7_2:79314160-79314179 Msa1080060:CDS 40.0%
AACACTCTTCCTATGAAGCA+CGG - chr7_2:79314207-79314226 Msa1080060:intron 40.0%
AGGCTTCTTATTGTTCTCCA+AGG + chr7_2:79314666-79314685 None:intergenic 40.0%
GTGTGGAATACTGTCAAGAA+AGG - chr7_2:79314710-79314729 Msa1080060:intron 40.0%
TGGAATACTGTCAAGAAAGG+AGG - chr7_2:79314713-79314732 Msa1080060:intron 40.0%
ATGTATTGGGCTGCAATTTG+AGG + chr7_2:79314874-79314893 None:intergenic 40.0%
TCCTAAGTCATATGATCCTG+AGG - chr7_2:79314904-79314923 Msa1080060:intron 40.0%
TCCTCAGGATCATATGACTT+AGG + chr7_2:79314908-79314927 None:intergenic 40.0%
GGATGAGATGTTGTAATTGC+TGG + chr7_2:79315136-79315155 None:intergenic 40.0%
TGTTGCATAATGCAATGCAG+TGG - chr7_2:79315227-79315246 Msa1080060:intron 40.0%
CCAAAGTCAAATTCGAACCA+TGG + chr7_2:79315451-79315470 None:intergenic 40.0%
! CCATGGTTCGAATTTGACTT+TGG - chr7_2:79315448-79315467 Msa1080060:CDS 40.0%
AAGTTCAGCAGAACCAGAAT+TGG - chr7_2:79313838-79313857 Msa1080060:three_prime_UTR 40.0%
AGTTCAGCAGAACCAGAATT+GGG - chr7_2:79313839-79313858 Msa1080060:three_prime_UTR 40.0%
TCAAGAGAAAGACCCAATTC+TGG + chr7_2:79313854-79313873 None:intergenic 40.0%
TCTCTTGAGAAGCTGAATCT+CGG - chr7_2:79313866-79313885 Msa1080060:three_prime_UTR 40.0%
! AAAGATTTGAAGTGGGTGTC+TGG - chr7_2:79314160-79314179 Msa1080060:CDS 40.0%
AACACTCTTCCTATGAAGCA+CGG - chr7_2:79314207-79314226 Msa1080060:intron 40.0%
AGGCTTCTTATTGTTCTCCA+AGG + chr7_2:79314666-79314685 None:intergenic 40.0%
GTGTGGAATACTGTCAAGAA+AGG - chr7_2:79314710-79314729 Msa1080060:intron 40.0%
TGGAATACTGTCAAGAAAGG+AGG - chr7_2:79314713-79314732 Msa1080060:intron 40.0%
ATGTATTGGGCTGCAATTTG+AGG + chr7_2:79314874-79314893 None:intergenic 40.0%
TCCTAAGTCATATGATCCTG+AGG - chr7_2:79314904-79314923 Msa1080060:intron 40.0%
TCCTCAGGATCATATGACTT+AGG + chr7_2:79314908-79314927 None:intergenic 40.0%
GGATGAGATGTTGTAATTGC+TGG + chr7_2:79315136-79315155 None:intergenic 40.0%
TGTTGCATAATGCAATGCAG+TGG - chr7_2:79315227-79315246 Msa1080060:intron 40.0%
CCAAAGTCAAATTCGAACCA+TGG + chr7_2:79315451-79315470 None:intergenic 40.0%
! CCATGGTTCGAATTTGACTT+TGG - chr7_2:79315448-79315467 Msa1080060:CDS 40.0%
TATGAAGCACGAACACTCCT+CGG + chr7_2:79314345-79314364 None:intergenic 45.0%
TTTCGAATCGCCAATAGCAC+AGG + chr7_2:79314490-79314509 None:intergenic 45.0%
GTCATATGATCCTGAGGACA+AGG - chr7_2:79314910-79314929 Msa1080060:intron 45.0%
TTGAAAGGAGTAGCTGAAGC+TGG - chr7_2:79315070-79315089 Msa1080060:CDS 45.0%
AGATGTTCAGTCCTACGTGA+AGG - chr7_2:79315093-79315112 Msa1080060:CDS 45.0%
GGAACGAACACGAGAATAGA+AGG + chr7_2:79315167-79315186 None:intergenic 45.0%
TATGAAGCACGAACACTCCT+CGG + chr7_2:79314345-79314364 None:intergenic 45.0%
TTTCGAATCGCCAATAGCAC+AGG + chr7_2:79314490-79314509 None:intergenic 45.0%
GTCATATGATCCTGAGGACA+AGG - chr7_2:79314910-79314929 Msa1080060:intron 45.0%
TTGAAAGGAGTAGCTGAAGC+TGG - chr7_2:79315070-79315089 Msa1080060:CDS 45.0%
AGATGTTCAGTCCTACGTGA+AGG - chr7_2:79315093-79315112 Msa1080060:CDS 45.0%
GGAACGAACACGAGAATAGA+AGG + chr7_2:79315167-79315186 None:intergenic 45.0%
TGTCAGTGACACGAGCTCTA+TGG + chr7_2:79313937-79313956 None:intergenic 50.0%
TAATCAGCGGTCCGAGACTT+TGG + chr7_2:79313971-79313990 None:intergenic 50.0%
TATGAAGCACGGACACGACA+CGG - chr7_2:79314218-79314237 Msa1080060:intron 50.0%
!! TATTATCGGTGTCGGCGTGT+GGG + chr7_2:79314247-79314266 None:intergenic 50.0%
!! TTATTATCGGTGTCGGCGTG+TGG + chr7_2:79314248-79314267 None:intergenic 50.0%
GATTAGGTATGTCCCGGTGT+CGG + chr7_2:79314323-79314342 None:intergenic 50.0%
! TCCTCGGATTAGGTATGTCC+CGG + chr7_2:79314329-79314348 None:intergenic 50.0%
GGTGCTTTAGCCTGTGCTAT+TGG - chr7_2:79314477-79314496 Msa1080060:CDS 50.0%
TCCTGAGGACAAGGATGACA+AGG - chr7_2:79314919-79314938 Msa1080060:intron 50.0%
! GACAAGGATGACAAGGCACT+GGG - chr7_2:79314926-79314945 Msa1080060:intron 50.0%
CGAGAATAGAAGGCCCAATC+AGG + chr7_2:79315157-79315176 None:intergenic 50.0%
TGTCAGTGACACGAGCTCTA+TGG + chr7_2:79313937-79313956 None:intergenic 50.0%
TAATCAGCGGTCCGAGACTT+TGG + chr7_2:79313971-79313990 None:intergenic 50.0%
TATGAAGCACGGACACGACA+CGG - chr7_2:79314218-79314237 Msa1080060:intron 50.0%
!! TATTATCGGTGTCGGCGTGT+GGG + chr7_2:79314247-79314266 None:intergenic 50.0%
!! TTATTATCGGTGTCGGCGTG+TGG + chr7_2:79314248-79314267 None:intergenic 50.0%
GATTAGGTATGTCCCGGTGT+CGG + chr7_2:79314323-79314342 None:intergenic 50.0%
! TCCTCGGATTAGGTATGTCC+CGG + chr7_2:79314329-79314348 None:intergenic 50.0%
GGTGCTTTAGCCTGTGCTAT+TGG - chr7_2:79314477-79314496 Msa1080060:CDS 50.0%
TCCTGAGGACAAGGATGACA+AGG - chr7_2:79314919-79314938 Msa1080060:intron 50.0%
! GACAAGGATGACAAGGCACT+GGG - chr7_2:79314926-79314945 Msa1080060:intron 50.0%
CGAGAATAGAAGGCCCAATC+AGG + chr7_2:79315157-79315176 None:intergenic 50.0%
! GGGTGTCTGGTCTTCTGCAA+TGG - chr7_2:79314173-79314192 Msa1080060:CDS 55.0%
GTGTCGTGTCCGTGCTTCAT+AGG + chr7_2:79314219-79314238 None:intergenic 55.0%
ACCGGGACATACCTAATCCG+AGG - chr7_2:79314325-79314344 Msa1080060:CDS 55.0%
GCACGAACACTCCTCGGATT+AGG + chr7_2:79314339-79314358 None:intergenic 55.0%
GCCTTGTCATCCTTGTCCTC+AGG + chr7_2:79314923-79314942 None:intergenic 55.0%
GGACAAGGATGACAAGGCAC+TGG - chr7_2:79314925-79314944 Msa1080060:intron 55.0%
! GGGTGTCTGGTCTTCTGCAA+TGG - chr7_2:79314173-79314192 Msa1080060:CDS 55.0%
GTGTCGTGTCCGTGCTTCAT+AGG + chr7_2:79314219-79314238 None:intergenic 55.0%
ACCGGGACATACCTAATCCG+AGG - chr7_2:79314325-79314344 Msa1080060:CDS 55.0%
GCACGAACACTCCTCGGATT+AGG + chr7_2:79314339-79314358 None:intergenic 55.0%
GCCTTGTCATCCTTGTCCTC+AGG + chr7_2:79314923-79314942 None:intergenic 55.0%
GGACAAGGATGACAAGGCAC+TGG - chr7_2:79314925-79314944 Msa1080060:intron 55.0%
!! CACCGACTCGTATCCGACAC+CGG - chr7_2:79314307-79314326 Msa1080060:intron 60.0%
!! ACCGACTCGTATCCGACACC+GGG - chr7_2:79314308-79314327 Msa1080060:intron 60.0%
! TCCCGGTGTCGGATACGAGT+CGG + chr7_2:79314312-79314331 None:intergenic 60.0%
!! CACCGACTCGTATCCGACAC+CGG - chr7_2:79314307-79314326 Msa1080060:intron 60.0%
!! ACCGACTCGTATCCGACACC+GGG - chr7_2:79314308-79314327 Msa1080060:intron 60.0%
! TCCCGGTGTCGGATACGAGT+CGG + chr7_2:79314312-79314331 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79313655 79315604 79313655 ID=Msa1080060;Name=Msa1080060
chr7_2 mRNA 79313655 79315604 79313655 ID=Msa1080060-mRNA-1;Parent=Msa1080060;Name=Msa1080060-mRNA-1;_AED=0.34;_eAED=0.34;_QI=97|1|1|1|1|1|6|397|268
chr7_2 exon 79313655 79314215 79313655 ID=Msa1080060-mRNA-1:exon:19973;Parent=Msa1080060-mRNA-1
chr7_2 exon 79314312 79314375 79314312 ID=Msa1080060-mRNA-1:exon:19972;Parent=Msa1080060-mRNA-1
chr7_2 exon 79314460 79314630 79314460 ID=Msa1080060-mRNA-1:exon:19971;Parent=Msa1080060-mRNA-1
chr7_2 exon 79314729 79314795 79314729 ID=Msa1080060-mRNA-1:exon:19970;Parent=Msa1080060-mRNA-1
chr7_2 exon 79315063 79315144 79315063 ID=Msa1080060-mRNA-1:exon:19969;Parent=Msa1080060-mRNA-1
chr7_2 exon 79315249 79315604 79315249 ID=Msa1080060-mRNA-1:exon:19968;Parent=Msa1080060-mRNA-1
chr7_2 five_prime_UTR 79315508 79315604 79315508 ID=Msa1080060-mRNA-1:five_prime_utr;Parent=Msa1080060-mRNA-1
chr7_2 CDS 79315249 79315507 79315249 ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1
chr7_2 CDS 79315063 79315144 79315063 ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1
chr7_2 CDS 79314729 79314795 79314729 ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1
chr7_2 CDS 79314460 79314630 79314460 ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1
chr7_2 CDS 79314312 79314375 79314312 ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1
chr7_2 CDS 79314052 79314215 79314052 ID=Msa1080060-mRNA-1:cds;Parent=Msa1080060-mRNA-1
chr7_2 three_prime_UTR 79313655 79314051 79313655 ID=Msa1080060-mRNA-1:three_prime_utr;Parent=Msa1080060-mRNA-1
Gene Sequence

>Msa1080060

ATGGAAGCAAAAAAAGAGAGTTGTAGTTATGGAAATATCAAAATCAAAGACTCTGAAGCTGATCATGATGACCATGATGATCACAAAAGTTCAGCAGAACCAGAATTGGGTCTTTCTCTTGAGAAGCTGAATCTCGGACCTAAGAAGAAATTGCTTATTATGAACCTTAACGGATTTCTTCTCCATAGAGCTCGTGTCACTGACAAGAAAGCAATTCCAAAGTCTCGGACCGCTGATTACAAATATCGTCACTTTCTCCTTTACAAGAGGCCATTTAGTGAAGAATTTATGAAATTCTGCTTAGAAAGATTTGAAGTGGGTGTCTGGTCTTCTGCAATGGAGCATAATGTTGATGGTGCTTTAGCCTGTGCTATTGGCGATTCGAAAAACAAGCTACTATTTGTTTGGGATCAAGGTAAATGTAGAGATTCTGGCTTTAAATCCTTGGAGAACAATAAGAAGCCTCTCTTTTTCAAAGAACTGAAAAAAGTGTGGAATACTGTCAAGAAAGGAGGACCATATTCTGCTTCAAATACTTTGCTGATCGATGACAAACCATACAAGTCTTTCCTTAATCCGCCCAATACATCAATTATTTTTCCTAAGTCATATGATCCTGAGGACAAGGATGACAAGGCACTGGATCCAAATGGTGACATATGCAAGTACTTGAAAGGAGTAGCTGAAGCTGGAGATGTTCAGTCCTACGTGAAGGATAATGCTATTGGTGAACCAGCAATTACAACATCTCATCCTGATTGGGCCTTCTATTCTCGTGTTCGTTCCCGTATAACTGCTAACAATTGA

Protein sequence

>Msa1080060

MEAKKESCSYGNIKIKDSEADHDDHDDHKSSAEPELGLSLEKLNLGPKKKLLIMNLNGFLLHRARVTDKKAIPKSRTADYKYRHFLLYKRPFSEEFMKFCLERFEVGVWSSAMEHNVDGALACAIGDSKNKLLFVWDQGKCRDSGFKSLENNKKPLFFKELKKVWNTVKKGGPYSASNTLLIDDKPYKSFLNPPNTSIIFPKSYDPEDKDDKALDPNGDICKYLKGVAEAGDVQSYVKDNAIGEPAITTSHPDWAFYSRVRSRITANN*