AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314650 MtrunA17_Chr4g0054351 97.269 659 12 3 1 654 1 658 0.0 1333
Msa1314650 MtrunA17_Chr3g0135161 53.198 688 256 23 1 653 1 657 0.0 565
Msa1314650 MtrunA17_Chr1g0152161 51.458 686 275 21 1 654 1 660 0.0 542
Msa1314650 MtrunA17_Chr5g0400871 48.397 686 180 30 1 654 1 544 2.67e-167 489
Msa1314650 MtrunA17_Chr8g0343851 47.251 491 181 10 18 492 3 431 1.68e-128 391
Msa1314650 MtrunA17_Chr4g0032631 57.862 318 105 7 248 558 121 416 1.65e-111 346
Msa1314650 MtrunA17_Chr4g0072291 72.018 218 58 1 293 507 143 360 6.10e-111 343
Msa1314650 MtrunA17_Chr2g0328971 67.073 246 74 3 300 539 158 402 2.70e-108 337
Msa1314650 MtrunA17_Chr7g0249621 77.723 202 42 1 298 496 248 449 3.29e-107 339
Msa1314650 MtrunA17_Chr5g0412151 80.108 186 34 1 300 482 215 400 5.40e-95 302
Msa1314650 MtrunA17_Chr4g0073521 71.084 166 48 0 308 473 46 211 3.29e-82 263
Msa1314650 MtrunA17_Chr7g0216601 62.366 186 66 2 291 473 48 232 4.55e-75 246
Msa1314650 MtrunA17_Chr8g0355191 63.636 176 63 1 308 483 54 228 7.91e-74 243
Msa1314650 MtrunA17_Chr6g0452911 61.340 194 65 1 290 473 42 235 1.55e-73 241
Msa1314650 MtrunA17_Chr4g0002011 68.639 169 50 1 308 473 35 203 4.77e-71 233
Msa1314650 MtrunA17_Chr8g0355181 50.204 245 115 3 308 552 55 292 1.52e-69 231
Msa1314650 MtrunA17_Chr8g0362541 49.612 258 114 3 262 505 23 278 2.19e-69 231
Msa1314650 MtrunA17_Chr8g0367311 70.548 146 43 0 346 491 22 167 4.76e-69 225
Msa1314650 MtrunA17_Chr2g0305821 58.333 144 48 2 278 419 24 157 2.30e-44 155
Msa1314650 MtrunA17_Chr4g0053181 53.333 165 69 3 312 476 176 332 3.96e-41 157
Msa1314650 MtrunA17_Chr7g0257361 63.077 130 40 2 307 433 55 179 6.09e-41 154
Msa1314650 MtrunA17_Chr5g0401891 53.333 165 69 3 312 476 152 308 1.87e-40 155
Msa1314650 MtrunA17_Chr4g0030191 49.419 172 79 3 312 483 131 294 9.82e-39 149
Msa1314650 MtrunA17_Chr7g0263581 50.303 165 74 3 312 476 139 295 1.24e-38 149
Msa1314650 MtrunA17_Chr2g0325911 46.667 165 65 4 312 476 134 275 4.04e-30 124
Msa1314650 MtrunA17_Chr2g0305831 73.684 57 15 0 417 473 3 59 2.48e-23 98.6
Msa1314650 MtrunA17_Chr3g0126151 47.368 95 49 1 357 451 47 140 4.35e-22 92.8
Msa1314650 MtrunA17_Chr8g0367321 48.214 112 43 4 240 347 93 193 2.94e-21 92.4
Msa1314650 MtrunA17_Chr1g0170761 39.007 141 78 3 288 428 113 245 7.45e-16 80.1
Msa1314650 MtrunA17_Chr1g0158971 49.315 73 36 1 396 468 99 170 1.54e-11 66.2
Msa1314650 MtrunA17_Chr4g0044901 35.514 107 64 3 412 515 96 200 2.53e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314650 AT4G37750.1 52.158 556 170 19 1 522 1 494 9.65e-157 463
Msa1314650 AT1G72570.1 71.721 244 63 3 252 491 164 405 4.74e-119 361
Msa1314650 AT5G57390.2 82.979 188 28 2 300 484 73 259 2.51e-110 340
Msa1314650 AT1G51190.1 64.751 261 84 4 248 503 128 385 2.95e-110 344
Msa1314650 AT3G20840.1 65.399 263 59 5 248 496 125 369 2.01e-109 342
Msa1314650 AT5G57390.1 82.979 188 28 2 300 484 191 377 3.09e-109 341
Msa1314650 AT5G17430.2 63.235 272 92 3 300 568 136 402 5.92e-107 334
Msa1314650 AT5G17430.1 63.235 272 92 3 300 568 198 464 1.94e-106 334
Msa1314650 AT5G10510.2 73.737 198 52 0 285 482 203 400 5.12e-92 295
Msa1314650 AT5G65510.4 69.014 213 63 1 285 494 146 358 6.38e-91 289
Msa1314650 AT5G65510.2 69.014 213 63 1 285 494 204 416 7.97e-91 291
Msa1314650 AT5G65510.1 69.014 213 63 1 285 494 204 416 7.97e-91 291
Msa1314650 AT5G10510.7 72.637 201 52 1 285 482 203 403 4.75e-90 290
Msa1314650 AT5G10510.5 72.637 201 52 1 285 482 203 403 4.75e-90 290
Msa1314650 AT5G10510.1 72.637 201 52 1 285 482 226 426 8.51e-90 290
Msa1314650 AT5G10510.6 72.637 201 52 1 285 482 241 441 9.13e-90 291
Msa1314650 AT5G10510.4 72.637 201 52 1 285 482 241 441 9.13e-90 291
Msa1314650 AT5G10510.3 65.611 221 53 1 285 482 241 461 1.76e-85 280
Msa1314650 AT5G65510.3 71.429 161 43 1 285 442 146 306 6.61e-79 253
Msa1314650 AT3G54320.3 68.047 169 51 1 308 473 61 229 1.78e-68 230
Msa1314650 AT3G54320.1 68.047 169 51 1 308 473 61 229 2.00e-68 230
Msa1314650 AT1G79700.2 67.456 169 52 1 308 473 48 216 1.57e-62 210
Msa1314650 AT1G16060.1 66.474 173 55 1 304 473 50 222 5.25e-61 207
Msa1314650 AT1G79700.1 63.314 169 49 2 308 473 48 206 9.56e-55 189
Msa1314650 AT3G54320.4 70.312 128 38 0 346 473 36 163 5.90e-51 181
Msa1314650 AT3G54320.5 70.312 128 38 0 346 473 36 163 5.90e-51 181
Msa1314650 AT1G79700.4 67.969 128 41 0 346 473 7 134 3.69e-43 155
Msa1314650 AT1G79700.3 67.969 128 41 0 346 473 13 140 3.72e-43 155
Msa1314650 AT1G16060.3 66.418 134 45 0 340 473 19 152 5.82e-42 153
Msa1314650 AT4G36920.1 42.449 245 112 5 236 476 68 287 2.62e-41 156
Msa1314650 AT4G36920.2 42.449 245 112 5 236 476 68 287 2.62e-41 156
Msa1314650 AT5G67180.3 48.851 174 81 3 312 485 96 261 1.06e-40 150
Msa1314650 AT2G41710.1 55.921 152 56 3 285 433 46 189 1.41e-40 154
Msa1314650 AT5G67180.2 49.143 175 81 3 312 486 96 262 1.77e-40 150
Msa1314650 AT2G41710.4 55.921 152 56 3 285 433 46 189 2.84e-40 154
Msa1314650 AT5G67180.1 49.143 175 81 3 312 486 96 262 4.35e-40 150
Msa1314650 AT2G41710.2 54.140 157 56 4 285 433 46 194 3.17e-38 147
Msa1314650 AT2G28550.3 43.111 225 97 8 312 526 153 356 1.55e-37 146
Msa1314650 AT2G41710.3 59.504 121 41 2 316 433 109 224 4.75e-34 135
Msa1314650 AT3G54320.2 72.727 88 24 0 386 473 1 88 7.43e-32 125
Msa1314650 AT1G16060.2 70.455 88 26 0 386 473 1 88 6.00e-31 120
Msa1314650 AT1G16060.4 70.455 88 26 0 386 473 1 88 6.00e-31 120
Msa1314650 AT1G16060.6 70.455 88 26 0 386 473 1 88 6.00e-31 120
Msa1314650 AT1G16060.5 70.455 88 26 0 386 473 1 88 6.00e-31 120
Msa1314650 AT2G28550.4 49.275 138 62 3 312 449 153 282 6.09e-31 124
Msa1314650 AT5G67180.4 48.252 143 66 3 312 454 96 230 3.39e-30 120
Msa1314650 AT2G28550.1 40.000 225 89 9 312 526 153 341 1.57e-29 122
Msa1314650 AT2G28550.2 49.194 124 55 3 312 435 153 268 2.46e-26 109
Msa1314650 AT2G28550.6 49.194 124 55 3 312 435 153 268 2.46e-26 109
Msa1314650 AT2G39250.2 42.202 109 56 2 313 421 109 210 4.40e-23 99.0
Msa1314650 AT2G39250.1 38.760 129 72 2 293 421 89 210 1.33e-22 99.8
Msa1314650 AT2G28550.5 38.743 191 78 7 346 526 14 175 2.16e-21 95.1
Msa1314650 AT5G60120.4 45.238 126 61 3 309 434 157 274 1.37e-19 92.0
Msa1314650 AT5G60120.3 45.238 126 61 3 309 434 157 274 1.37e-19 92.0
Msa1314650 AT5G60120.5 45.238 126 61 3 309 434 157 274 1.37e-19 92.0
Msa1314650 AT5G60120.6 39.873 158 72 5 309 466 157 291 2.01e-19 92.4
Msa1314650 AT5G60120.1 39.873 158 72 5 309 466 157 291 2.42e-19 92.0
Msa1314650 AT5G60120.2 39.873 158 72 5 309 466 157 291 3.01e-19 92.0
Msa1314650 AT3G54990.2 46.154 104 49 2 312 415 122 218 3.92e-18 84.7
Msa1314650 AT3G54990.1 46.154 104 49 2 312 415 122 218 2.07e-17 84.7
Msa1314650 AT1G16060.7 77.193 57 13 0 417 473 10 66 4.38e-16 77.4
Msa1314650 AT1G03800.1 53.226 62 28 1 412 473 53 113 8.08e-12 66.2
Msa1314650 AT5G65130.2 34.752 141 68 5 380 497 74 213 8.78e-11 63.5
Msa1314650 AT5G65130.1 34.752 141 68 5 380 497 72 211 8.92e-11 63.5

Find 133 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCCTTAGTTAGTATATA+AGG 0.205288 8_4:+13669667 None:intergenic
TAAAGGATTGTAAAATGTTT+AGG 0.209265 8_4:+13665991 None:intergenic
CAAATAGTAATTTGAATTCT+TGG 0.209522 8_4:-13666362 Msa1314650:CDS
TCTACAATACCATGTCTTAA+AGG 0.217384 8_4:+13665974 None:intergenic
CAAGAATTCAAATTACTATT+TGG 0.219550 8_4:+13666363 None:intergenic
AGTAACTATTGTTACTCTTA+TGG 0.248617 8_4:-13669306 Msa1314650:CDS
AAAGGATTGTAAAATGTTTA+GGG 0.256300 8_4:+13665992 None:intergenic
AGGAAATCTATTGATACTTT+TGG 0.282332 8_4:-13668508 Msa1314650:CDS
TTCAACAGCTTCAAAACTAT+TGG 0.285703 8_4:-13666397 Msa1314650:CDS
ATATATCTATAAACTCTCTT+TGG 0.290703 8_4:+13669638 None:intergenic
AATATTGGTTCAATGGCTTA+TGG 0.295832 8_4:-13668688 Msa1314650:CDS
AATGCTAGGTCTTCATTCTA+TGG 0.296635 8_4:+13669760 None:intergenic
GGAGATATGAAGCTCATCTA+TGG 0.306792 8_4:-13668324 Msa1314650:CDS
CTAAAATGTAGTTACTAAAA+AGG 0.307240 8_4:+13666032 None:intergenic
CTTCACCCATGTTTGATTGA+TGG 0.312766 8_4:+13668830 None:intergenic
GGGACCCTTCACAACATCTT+AGG 0.319809 8_4:-13666341 Msa1314650:CDS
ATAAGCCATTGAACCAATAT+TGG 0.320548 8_4:+13668690 None:intergenic
AATTTCAATGCAGAAGAATA+TGG 0.321865 8_4:-13666664 Msa1314650:CDS
AACCATGAGTTGATGTTAGA+AGG 0.326730 8_4:-13668886 Msa1314650:CDS
GTTCTTTCATTCTCAAATCT+TGG 0.331942 8_4:+13666597 None:intergenic
CTGTTGAAGTTGTTGATGTT+GGG 0.335268 8_4:+13666626 None:intergenic
GATATATTTCATTACATTGC+TGG 0.337570 8_4:-13669622 Msa1314650:five_prime_UTR
TCTCCTCAAATGAATAATAT+TGG 0.338994 8_4:-13669432 Msa1314650:CDS
ACATTAACAATGAAAATAAC+TGG 0.340271 8_4:-13669470 Msa1314650:CDS
ATTTGTTTATTAGGCATAGA+TGG 0.340933 8_4:-13668351 Msa1314650:intron
AAATAGTAATTTGAATTCTT+GGG 0.341154 8_4:-13666361 Msa1314650:CDS
GACTTAGTGGTTTAAAGAAC+TGG 0.346259 8_4:-13668801 Msa1314650:CDS
ATCAGATTTGAGAGGCATAA+TGG 0.354338 8_4:+13669245 None:intergenic
TCAAGCAGCACTCAAGTATT+GGG 0.359648 8_4:-13667788 Msa1314650:CDS
CTTGCCATCTTCCATGTTGA+TGG 0.372286 8_4:+13667319 None:intergenic
GGTAATAAAGATCTATATCT+TGG 0.375013 8_4:-13667276 Msa1314650:CDS
AAAGAAGGCCAAAGCAGAAA+AGG 0.375414 8_4:-13668286 Msa1314650:CDS
TGTATCAAATGCTTCTTCAT+TGG 0.379502 8_4:-13666493 Msa1314650:CDS
TGATGGATCTCTTTATGAAA+TGG 0.383299 8_4:-13669226 Msa1314650:CDS
GAAGACCTAGCATTGCTTGC+TGG 0.391924 8_4:-13669751 Msa1314650:five_prime_UTR
TCTGTTGAAGTTGTTGATGT+TGG 0.394185 8_4:+13666625 None:intergenic
AGCAGAAGCAAATTGTTCAT+AGG 0.397213 8_4:-13668528 Msa1314650:CDS
GCTGGTTAGATACTTAGATA+TGG 0.409207 8_4:-13669604 Msa1314650:five_prime_UTR
AACAATGAAAATAACTGGTT+AGG 0.421756 8_4:-13669465 Msa1314650:CDS
TGGATCCAATATTGGTTCAA+TGG 0.423285 8_4:-13668695 Msa1314650:CDS
GGTGAAGATCATGGACTTAG+TGG 0.425302 8_4:-13668814 Msa1314650:CDS
AAGGGTATATGTATATCTAA+AGG 0.426431 8_4:+13669686 None:intergenic
GTGCCTTAGTTAGTATATAA+GGG 0.433582 8_4:+13669668 None:intergenic
AGGGTATATGTATATCTAAA+GGG 0.435527 8_4:+13669687 None:intergenic
TCAGATTTGAGAGGCATAAT+GGG 0.436788 8_4:+13669246 None:intergenic
ATCAAGCAGCACTCAAGTAT+TGG 0.444500 8_4:-13667789 Msa1314650:CDS
TTTATTAGGCATAGATGGAC+TGG 0.446937 8_4:-13668346 Msa1314650:intron
ACACCAATATTATTCATTTG+AGG 0.447211 8_4:+13669429 None:intergenic
TATAATATGACAACTGTTGT+TGG 0.447627 8_4:+13668923 None:intergenic
TCAACATTGAACAAGCTAGA+AGG 0.451377 8_4:-13666776 Msa1314650:CDS
GGTGAATGTGGATCCAATAT+TGG 0.454709 8_4:-13668703 Msa1314650:CDS
GAGGGACAATATGTAAGAAA+TGG 0.454968 8_4:-13666186 Msa1314650:three_prime_UTR
GATGGGAGATAGTAAAATTG+AGG 0.459317 8_4:-13666162 Msa1314650:three_prime_UTR
GGAAGATGGCAAGCTCGAAT+TGG 0.460222 8_4:-13667309 Msa1314650:CDS
CCTTGTTACTCCTCTGTACA+TGG 0.462036 8_4:+13667459 None:intergenic
ACAAGCTTGCAAAATCTCTC+TGG 0.463000 8_4:-13666429 Msa1314650:CDS
TGTTGAAAATTCTGTTGCTA+TGG 0.468546 8_4:-13668581 Msa1314650:CDS
CACAAGATAACAGAATTTCA+AGG 0.474506 8_4:+13669536 None:intergenic
ATGCTAGGTCTTCATTCTAT+GGG 0.475763 8_4:+13669761 None:intergenic
TGTGATAGAGAACAAAAGAA+AGG 0.478820 8_4:+13666262 None:intergenic
TCAAACATGGGTGAAGATCA+TGG 0.480026 8_4:-13668823 Msa1314650:CDS
CAAAGAACCTCTCAATATAG+AGG 0.481584 8_4:-13668484 Msa1314650:CDS
ATGAAATGGAAGCTCTTAGC+AGG 0.491080 8_4:-13669212 Msa1314650:CDS
AATATGTTGCTCATTTAAGA+AGG 0.492255 8_4:-13667584 Msa1314650:intron
GAGAGAAAATATGAAGAGAA+TGG 0.493769 8_4:-13669514 Msa1314650:exon
CAAAGCAGAAAAGGAAGACA+AGG 0.499730 8_4:-13668277 Msa1314650:intron
CTGGCATCTGAGGCAAAGAA+AGG 0.499839 8_4:+13666313 None:intergenic
GCTCGAATTGGTAGAGTAGC+TGG 0.499873 8_4:-13667297 Msa1314650:CDS
ATACCCTTATATACTAACTA+AGG 0.501254 8_4:-13669671 Msa1314650:five_prime_UTR
GAGTAACAATAGTTACTAAG+AGG 0.502157 8_4:+13669312 None:intergenic
TTGTGTCAAAGCATGTTTCG+AGG 0.505861 8_4:-13666073 Msa1314650:three_prime_UTR
TGATCATGTCCATGACTAGC+TGG 0.509563 8_4:+13668763 None:intergenic
ATGGGAGATAGTAAAATTGA+GGG 0.510372 8_4:-13666161 Msa1314650:three_prime_UTR
GGACTTGAACATGAAAATGC+TGG 0.514334 8_4:-13669285 Msa1314650:CDS
GTGATAGAGAACAAAAGAAA+GGG 0.521763 8_4:+13666263 None:intergenic
TTGTTGTCATATGCAGAAGA+AGG 0.522088 8_4:+13666702 None:intergenic
TAGCTTGTTCAATGTTGAGA+AGG 0.523772 8_4:+13666781 None:intergenic
AATGAAGAATATGACAAGAC+AGG 0.524291 8_4:-13667607 Msa1314650:CDS
TGGTAAAAGCTTGCTTGAAG+TGG 0.527376 8_4:+13669342 None:intergenic
GCAGAAGCAGAAGCAGAAGA+AGG 0.529348 8_4:+13669378 None:intergenic
GTACTACTACATGCATAATG+AGG 0.531601 8_4:+13669015 None:intergenic
ATTATGCCTCTCAAATCTGA+TGG 0.532902 8_4:-13669243 Msa1314650:CDS
AAGCAAAGTCAAACTTCAAG+TGG 0.535525 8_4:-13668859 Msa1314650:CDS
GACACCATCAACATGGAAGA+TGG 0.537820 8_4:-13667323 Msa1314650:CDS
ACCCTTCTAACATCAACTCA+TGG 0.539230 8_4:+13668884 None:intergenic
ACACAGCTAGACTGAGAGCT+AGG 0.545759 8_4:+13668634 None:intergenic
TTATTAGGCATAGATGGACT+GGG 0.547892 8_4:-13668345 Msa1314650:intron
ACCATGAGTTGATGTTAGAA+GGG 0.549490 8_4:-13668885 Msa1314650:CDS
TACTACTACATGCATAATGA+GGG 0.551148 8_4:+13669016 None:intergenic
GCTATGGATACAAAGAAAAG+AGG 0.553448 8_4:-13668565 Msa1314650:CDS
TGGCATCTGAGGCAAAGAAA+GGG 0.555089 8_4:+13666314 None:intergenic
GATGATTGTTCCTGTTGTAG+AGG 0.558499 8_4:-13668734 Msa1314650:CDS
TTGAAGTTGTTGATGTTGGG+AGG 0.565145 8_4:+13666629 None:intergenic
ACTTAGTGGTTTAAAGAACT+GGG 0.566240 8_4:-13668800 Msa1314650:CDS
GACAACAGTTGCAAGAAAGA+AGG 0.566962 8_4:-13668301 Msa1314650:CDS
CAATATGTAAGAAATGGTGA+TGG 0.568192 8_4:-13666180 Msa1314650:three_prime_UTR
GTATTCCAGCAAGCAATGCT+AGG 0.570286 8_4:+13669746 None:intergenic
AAATTTCCATCAATCAAACA+TGG 0.572921 8_4:-13668836 Msa1314650:CDS
GGGAAGTTTATGTGAGTGGA+TGG 0.574919 8_4:+13667763 None:intergenic
AACAGGGAAGTTTATGTGAG+TGG 0.577161 8_4:+13667759 None:intergenic
GAGATATGAAGCTCATCTAT+GGG 0.580404 8_4:-13668323 Msa1314650:CDS
AATATGTAAGAAATGGTGAT+GGG 0.581590 8_4:-13666179 Msa1314650:three_prime_UTR
AGTTTGAGCAGTTCAAGAGA+AGG 0.582795 8_4:-13666465 Msa1314650:CDS
GAAGGCCTAAGATGTTGTGA+AGG 0.585697 8_4:+13666336 None:intergenic
GAGGAAAATGAAGGTGAATG+TGG 0.588553 8_4:-13668715 Msa1314650:CDS
AAAAGCAGTGGATTCTCAAG+AGG 0.594604 8_4:-13667487 Msa1314650:CDS
AAAGCAGTGGATTCTCAAGA+GGG 0.594710 8_4:-13667486 Msa1314650:CDS
CTCAATATAGAGGTGTCACA+AGG 0.598946 8_4:-13668474 Msa1314650:intron
GTTTCATCAAGAAGTAGTTG+AGG 0.620030 8_4:-13666538 Msa1314650:CDS
AACATGCTGTCTAAGCTCAA+AGG 0.623476 8_4:+13668976 None:intergenic
GTGAAGGTCTTTCTCATACA+CGG 0.626154 8_4:-13669787 Msa1314650:five_prime_UTR
TGTGACACCTCTATATTGAG+AGG 0.628488 8_4:+13668477 None:intergenic
AAATTATCAAAATCAACTTG+AGG 0.631469 8_4:-13667631 Msa1314650:CDS
GGTAGCAGACACCATCAACA+TGG 0.639807 8_4:-13667330 Msa1314650:intron
CCATGTACAGAGGAGTAACA+AGG 0.640756 8_4:-13667459 Msa1314650:intron
GTAGAATAAAGCAAAAGTGA+AGG 0.641419 8_4:-13669803 None:intergenic
ATTGCAGCTATAAAATTCAG+AGG 0.642745 8_4:-13666870 Msa1314650:CDS
AATTTCCATCAATCAAACAT+GGG 0.644018 8_4:-13668835 Msa1314650:CDS
ATCTGAGGCAAAGAAAGGGA+AGG 0.647053 8_4:+13666318 None:intergenic
AGTTACTAAGAGGAGAAGAG+TGG 0.647916 8_4:+13669322 None:intergenic
AAGGCCTAAGATGTTGTGAA+GGG 0.651408 8_4:+13666337 None:intergenic
CCTGTTGTAGAGGAAAATGA+AGG 0.654487 8_4:-13668724 Msa1314650:CDS
CAAGCAGCACTCAAGTATTG+GGG 0.655625 8_4:-13667787 Msa1314650:CDS
AGAGATCCATCAGATTTGAG+AGG 0.660630 8_4:+13669237 None:intergenic
CTTAGCAGGTCACAAACACA+AGG 0.664909 8_4:-13669198 Msa1314650:intron
TGCTAGGTCTTCATTCTATG+GGG 0.667132 8_4:+13669762 None:intergenic
AGCTAGAAGGAACAAAGAGG+TGG 0.670383 8_4:-13666763 Msa1314650:CDS
AAGCAGTGGATTCTCAAGAG+GGG 0.699895 8_4:-13667485 Msa1314650:CDS
AGAGGGGCTTCCATGTACAG+AGG 0.703240 8_4:-13667469 Msa1314650:CDS
AGCAGATGACATATTCTGTG+AGG 0.705618 8_4:+13668606 None:intergenic
ACTACTACATGCATAATGAG+GGG 0.710323 8_4:+13669017 None:intergenic
ACAAGCTAGAAGGAACAAAG+AGG 0.715606 8_4:-13666766 Msa1314650:CDS
CATGTTATCCAAAGACACTG+AGG 0.754091 8_4:+13666560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTAATTATATTTTAA+TGG + chr8_4:13668356-13668375 None:intergenic 0.0%
!!! ATATTTTATTATATCAAAGT+TGG + chr8_4:13668927-13668946 None:intergenic 10.0%
!!! ATTCTTTTTGTTTAGTTTAA+AGG - chr8_4:13666034-13666053 Msa1314650:three_prime_UTR 15.0%
!! AGTACTAGTAAAAAAAAATT+AGG + chr8_4:13667319-13667338 None:intergenic 15.0%
!!! TTTTGACAAAAACTATATTT+TGG + chr8_4:13667559-13667578 None:intergenic 15.0%
!! AACAAAATAAAAAATGAGAA+TGG + chr8_4:13667711-13667730 None:intergenic 15.0%
!!! ATTCCAAAATTTTGATTTTA+GGG - chr8_4:13667908-13667927 Msa1314650:intron 15.0%
!! CAATTAATAAACCTTATAAA+TGG + chr8_4:13668069-13668088 None:intergenic 15.0%
!! AGTACATTACAATATTAAAT+TGG + chr8_4:13668564-13668583 None:intergenic 15.0%
!! AAATAGTAATTTGAATTCTT+GGG - chr8_4:13669396-13669415 Msa1314650:CDS 15.0%
!! ATATATCTATAAACTCTCTT+TGG + chr8_4:13666122-13666141 None:intergenic 20.0%
!! ACATTAACAATGAAAATAAC+TGG - chr8_4:13666287-13666306 Msa1314650:CDS 20.0%
!! ATTATGTGTGTATTAATGTA+TGG - chr8_4:13666604-13666623 Msa1314650:CDS 20.0%
!! CACAAAAATAGATAAAAAGT+GGG + chr8_4:13666657-13666676 None:intergenic 20.0%
!! TCACAAAAATAGATAAAAAG+TGG + chr8_4:13666658-13666677 None:intergenic 20.0%
!!! TTTTTTAGGTAATGAAACTA+TGG - chr8_4:13666714-13666733 Msa1314650:CDS 20.0%
!!! TTTTTAGGTAATGAAACTAT+GGG - chr8_4:13666715-13666734 Msa1314650:CDS 20.0%
!!! TGTGTTTTGATTTGTTTATT+AGG - chr8_4:13667397-13667416 Msa1314650:intron 20.0%
!!! CATTCCAAAATTTTGATTTT+AGG - chr8_4:13667907-13667926 Msa1314650:intron 20.0%
!!! TTCCAAAATTTTGATTTTAG+GGG - chr8_4:13667909-13667928 Msa1314650:intron 20.0%
!!! AATGATTGTTATTACTAACA+GGG + chr8_4:13668017-13668036 None:intergenic 20.0%
!!! TAATGATTGTTATTACTAAC+AGG + chr8_4:13668018-13668037 None:intergenic 20.0%
!! TTGTTTCAATTCCATTTATA+AGG - chr8_4:13668055-13668074 Msa1314650:intron 20.0%
!! AAATTATCAAAATCAACTTG+AGG - chr8_4:13668126-13668145 Msa1314650:intron 20.0%
!!! CTTGGATTATATTTTTACTT+GGG + chr8_4:13668782-13668801 None:intergenic 20.0%
!! ATATGATGTTGAAAAAATCA+TGG - chr8_4:13668943-13668962 Msa1314650:CDS 20.0%
!! CAAGAATTCAAATTACTATT+TGG + chr8_4:13669397-13669416 None:intergenic 20.0%
!! CAAATAGTAATTTGAATTCT+TGG - chr8_4:13669395-13669414 Msa1314650:CDS 20.0%
!! CTAAAATGTAGTTACTAAAA+AGG + chr8_4:13669728-13669747 None:intergenic 20.0%
!! AAAGGATTGTAAAATGTTTA+GGG + chr8_4:13669768-13669787 None:intergenic 20.0%
!! TAAAGGATTGTAAAATGTTT+AGG + chr8_4:13669769-13669788 None:intergenic 20.0%
! AGGGTATATGTATATCTAAA+GGG + chr8_4:13666073-13666092 None:intergenic 25.0%
!! AAGGGTATATGTATATCTAA+AGG + chr8_4:13666074-13666093 None:intergenic 25.0%
! ATACCCTTATATACTAACTA+AGG - chr8_4:13666086-13666105 Msa1314650:three_prime_UTR 25.0%
! GATATATTTCATTACATTGC+TGG - chr8_4:13666135-13666154 Msa1314650:three_prime_UTR 25.0%
! AACAATGAAAATAACTGGTT+AGG - chr8_4:13666292-13666311 Msa1314650:CDS 25.0%
! TCTCCTCAAATGAATAATAT+TGG - chr8_4:13666325-13666344 Msa1314650:CDS 25.0%
! ACACCAATATTATTCATTTG+AGG + chr8_4:13666331-13666350 None:intergenic 25.0%
! AGTAACTATTGTTACTCTTA+TGG - chr8_4:13666451-13666470 Msa1314650:CDS 25.0%
!!! CCTAAAAAATTCTCTAGTTT+TGG + chr8_4:13666703-13666722 None:intergenic 25.0%
!!! CCAAAACTAGAGAATTTTTT+AGG - chr8_4:13666700-13666719 Msa1314650:CDS 25.0%
!!! TTTTAGGTAATGAAACTATG+GGG - chr8_4:13666716-13666735 Msa1314650:CDS 25.0%
!!! TGTTTTGTTGGATATGATTT+TGG + chr8_4:13666807-13666826 None:intergenic 25.0%
! TATAATATGACAACTGTTGT+TGG + chr8_4:13666837-13666856 None:intergenic 25.0%
! AAATTTCCATCAATCAAACA+TGG - chr8_4:13666921-13666940 Msa1314650:intron 25.0%
! AATTTCCATCAATCAAACAT+GGG - chr8_4:13666922-13666941 Msa1314650:intron 25.0%
!! AGGAAATCTATTGATACTTT+TGG - chr8_4:13667249-13667268 Msa1314650:intron 25.0%
! ATTTGTTTATTAGGCATAGA+TGG - chr8_4:13667406-13667425 Msa1314650:intron 25.0%
! AATGATACTATGTGAACATT+TGG - chr8_4:13667507-13667526 Msa1314650:intron 25.0%
!!! TTTGTTATTAGATTCTGTCT+TGG - chr8_4:13667833-13667852 Msa1314650:intron 25.0%
!!! TTGCTTATGTTTTTAACATG+AGG - chr8_4:13667863-13667882 Msa1314650:intron 25.0%
!!! TCCAAAATTTTGATTTTAGG+GGG - chr8_4:13667910-13667929 Msa1314650:intron 25.0%
! TTTCATTCTCTTATAACAGT+TGG - chr8_4:13668102-13668121 Msa1314650:intron 25.0%
! AATATGTTGCTCATTTAAGA+AGG - chr8_4:13668173-13668192 Msa1314650:intron 25.0%
! GGTAATAAAGATCTATATCT+TGG - chr8_4:13668481-13668500 Msa1314650:CDS 25.0%
! TTAAATTGGTACATGATCAA+TGG + chr8_4:13668550-13668569 None:intergenic 25.0%
!!! CCTTGGATTATATTTTTACT+TGG + chr8_4:13668783-13668802 None:intergenic 25.0%
! CCAAGTAAAAATATAATCCA+AGG - chr8_4:13668780-13668799 Msa1314650:CDS 25.0%
!! CTCATTGAAATGAAACTTTT+AGG - chr8_4:13668833-13668852 Msa1314650:CDS 25.0%
! AATTTCAATGCAGAAGAATA+TGG - chr8_4:13669093-13669112 Msa1314650:intron 25.0%
!!! TCTTTCTTTTACTTTTTGCA+TGG - chr8_4:13669549-13669568 Msa1314650:five_prime_UTR 25.0%
! AATATGTAAGAAATGGTGAT+GGG - chr8_4:13669578-13669597 Msa1314650:five_prime_UTR 25.0%
!!! TTTTACAATCCTTTAAGACA+TGG - chr8_4:13669774-13669793 Msa1314650:five_prime_UTR 25.0%
GTGCCTTAGTTAGTATATAA+GGG + chr8_4:13666092-13666111 None:intergenic 30.0%
TGTGCCTTAGTTAGTATATA+AGG + chr8_4:13666093-13666112 None:intergenic 30.0%
CACAAGATAACAGAATTTCA+AGG + chr8_4:13666224-13666243 None:intergenic 30.0%
GAGAGAAAATATGAAGAGAA+TGG - chr8_4:13666243-13666262 Msa1314650:three_prime_UTR 30.0%
GAGTAACAATAGTTACTAAG+AGG + chr8_4:13666448-13666467 None:intergenic 30.0%
! TGATGGATCTCTTTATGAAA+TGG - chr8_4:13666531-13666550 Msa1314650:CDS 30.0%
TACTACTACATGCATAATGA+GGG + chr8_4:13666744-13666763 None:intergenic 30.0%
ACTTAGTGGTTTAAAGAACT+GGG - chr8_4:13666957-13666976 Msa1314650:intron 30.0%
! GTTTAAAGAACTGGGTTTTA+AGG - chr8_4:13666965-13666984 Msa1314650:intron 30.0%
ATAAGCCATTGAACCAATAT+TGG + chr8_4:13667070-13667089 None:intergenic 30.0%
!! AATATTGGTTCAATGGCTTA+TGG - chr8_4:13667069-13667088 Msa1314650:intron 30.0%
TGTTGAAAATTCTGTTGCTA+TGG - chr8_4:13667176-13667195 Msa1314650:intron 30.0%
!!! TGTTTTTTGCTTTCTTTGCT+TGG - chr8_4:13667727-13667746 Msa1314650:intron 30.0%
AGATACTTCTAGTATGACTT+TGG + chr8_4:13667812-13667831 None:intergenic 30.0%
! ACCCCCTAAAATCAAAATTT+TGG + chr8_4:13667914-13667933 None:intergenic 30.0%
TGGAATTGAAACAAAAGACA+TGG + chr8_4:13668049-13668068 None:intergenic 30.0%
AATGAAGAATATGACAAGAC+AGG - chr8_4:13668150-13668169 Msa1314650:intron 30.0%
CTTTCAAAATCTTGTTCACT+TGG - chr8_4:13668406-13668425 Msa1314650:intron 30.0%
!! AATTTTGATCCCACAAACAT+TGG + chr8_4:13668758-13668777 None:intergenic 30.0%
! TTTAACTTTCATGCTAACCT+TGG + chr8_4:13668800-13668819 None:intergenic 30.0%
! TTTTATAGCTGCAATGTCAT+AGG + chr8_4:13668882-13668901 None:intergenic 30.0%
ATTGCAGCTATAAAATTCAG+AGG - chr8_4:13668887-13668906 Msa1314650:CDS 30.0%
GTTCTTTCATTCTCAAATCT+TGG + chr8_4:13669163-13669182 None:intergenic 30.0%
TGTATCAAATGCTTCTTCAT+TGG - chr8_4:13669264-13669283 Msa1314650:CDS 30.0%
!!! AATAGTTTTGAAGCTGTTGA+AGG + chr8_4:13669361-13669380 None:intergenic 30.0%
TTCAACAGCTTCAAAACTAT+TGG - chr8_4:13669360-13669379 Msa1314650:CDS 30.0%
GTGATAGAGAACAAAAGAAA+GGG + chr8_4:13669497-13669516 None:intergenic 30.0%
TGTGATAGAGAACAAAAGAA+AGG + chr8_4:13669498-13669517 None:intergenic 30.0%
!!! TTCTTTTACTTTTTGCATGG+AGG - chr8_4:13669552-13669571 Msa1314650:five_prime_UTR 30.0%
!!! TCTTTTACTTTTTGCATGGA+GGG - chr8_4:13669553-13669572 Msa1314650:five_prime_UTR 30.0%
CAATATGTAAGAAATGGTGA+TGG - chr8_4:13669577-13669596 Msa1314650:five_prime_UTR 30.0%
ATGGGAGATAGTAAAATTGA+GGG - chr8_4:13669596-13669615 Msa1314650:five_prime_UTR 30.0%
TCTACAATACCATGTCTTAA+AGG + chr8_4:13669786-13669805 None:intergenic 30.0%
ATGCTAGGTCTTCATTCTAT+GGG + chr8_4:13665999-13666018 None:intergenic 35.0%
AATGCTAGGTCTTCATTCTA+TGG + chr8_4:13666000-13666019 None:intergenic 35.0%
GCTGGTTAGATACTTAGATA+TGG - chr8_4:13666153-13666172 Msa1314650:three_prime_UTR 35.0%
! TCAGATTTGAGAGGCATAAT+GGG + chr8_4:13666514-13666533 None:intergenic 35.0%
! ATCAGATTTGAGAGGCATAA+TGG + chr8_4:13666515-13666534 None:intergenic 35.0%
ATTATGCCTCTCAAATCTGA+TGG - chr8_4:13666514-13666533 Msa1314650:CDS 35.0%
ACTACTACATGCATAATGAG+GGG + chr8_4:13666743-13666762 None:intergenic 35.0%
GTACTACTACATGCATAATG+AGG + chr8_4:13666745-13666764 None:intergenic 35.0%
! GTTGGTTGTTCATGTTTTGT+TGG + chr8_4:13666819-13666838 None:intergenic 35.0%
!! AACCATGAGTTGATGTTAGA+AGG - chr8_4:13666871-13666890 Msa1314650:CDS 35.0%
!! ACCATGAGTTGATGTTAGAA+GGG - chr8_4:13666872-13666891 Msa1314650:CDS 35.0%
AAGCAAAGTCAAACTTCAAG+TGG - chr8_4:13666898-13666917 Msa1314650:CDS 35.0%
GACTTAGTGGTTTAAAGAAC+TGG - chr8_4:13666956-13666975 Msa1314650:intron 35.0%
!! TGGATCCAATATTGGTTCAA+TGG - chr8_4:13667062-13667081 Msa1314650:intron 35.0%
GCTATGGATACAAAGAAAAG+AGG - chr8_4:13667192-13667211 Msa1314650:intron 35.0%
AGCAGAAGCAAATTGTTCAT+AGG - chr8_4:13667229-13667248 Msa1314650:intron 35.0%
CAAAGAACCTCTCAATATAG+AGG - chr8_4:13667273-13667292 Msa1314650:CDS 35.0%
TTTATTAGGCATAGATGGAC+TGG - chr8_4:13667411-13667430 Msa1314650:intron 35.0%
! TTATTAGGCATAGATGGACT+GGG - chr8_4:13667412-13667431 Msa1314650:intron 35.0%
GAGATATGAAGCTCATCTAT+GGG - chr8_4:13667434-13667453 Msa1314650:intron 35.0%
! TTTTTGCTTTCTTTGCTTGG+CGG - chr8_4:13667730-13667749 Msa1314650:intron 35.0%
TGATGAGACACAGTTTATCT+TGG - chr8_4:13667778-13667797 Msa1314650:CDS 35.0%
!! GATTTTAGGGGGTTATGATA+TGG - chr8_4:13667921-13667940 Msa1314650:intron 35.0%
GATCTTATCAGAAAAAGCAG+TGG - chr8_4:13668258-13668277 Msa1314650:intron 35.0%
GTGAGTTCTTTCATACTCTT+TGG - chr8_4:13668512-13668531 Msa1314650:CDS 35.0%
TGTAATGTACTAGACACATG+TGG - chr8_4:13668573-13668592 Msa1314650:CDS 35.0%
ATGTTCTGTTCCAATGTTTG+TGG - chr8_4:13668745-13668764 Msa1314650:CDS 35.0%
TGTTCTGTTCCAATGTTTGT+GGG - chr8_4:13668746-13668765 Msa1314650:CDS 35.0%
!! GAAACTTTTAGGTACTCAAG+AGG - chr8_4:13668844-13668863 Msa1314650:CDS 35.0%
!! TAGCTTGTTCAATGTTGAGA+AGG + chr8_4:13668979-13668998 None:intergenic 35.0%
TCAACATTGAACAAGCTAGA+AGG - chr8_4:13668981-13669000 Msa1314650:CDS 35.0%
TTGTTGTCATATGCAGAAGA+AGG + chr8_4:13669058-13669077 None:intergenic 35.0%
CTGTTGAAGTTGTTGATGTT+GGG + chr8_4:13669134-13669153 None:intergenic 35.0%
TCTGTTGAAGTTGTTGATGT+TGG + chr8_4:13669135-13669154 None:intergenic 35.0%
!! AACTTTTTCCTCAGTGTCTT+TGG - chr8_4:13669189-13669208 Msa1314650:intron 35.0%
GTTTCATCAAGAAGTAGTTG+AGG - chr8_4:13669219-13669238 Msa1314650:CDS 35.0%
!! TTTTGCAAGCTTGTTCTATC+TGG + chr8_4:13669322-13669341 None:intergenic 35.0%
GAGGGACAATATGTAAGAAA+TGG - chr8_4:13669571-13669590 Msa1314650:five_prime_UTR 35.0%
GATGGGAGATAGTAAAATTG+AGG - chr8_4:13669595-13669614 Msa1314650:five_prime_UTR 35.0%
GTGAAGGTCTTTCTCATACA+CGG - chr8_4:13665970-13665989 Msa1314650:three_prime_UTR 40.0%
TGCTAGGTCTTCATTCTATG+GGG + chr8_4:13665998-13666017 None:intergenic 40.0%
! TGGTAAAAGCTTGCTTGAAG+TGG + chr8_4:13666418-13666437 None:intergenic 40.0%
AGTTACTAAGAGGAGAAGAG+TGG + chr8_4:13666438-13666457 None:intergenic 40.0%
GGACTTGAACATGAAAATGC+TGG - chr8_4:13666472-13666491 Msa1314650:CDS 40.0%
AGAGATCCATCAGATTTGAG+AGG + chr8_4:13666523-13666542 None:intergenic 40.0%
ATGAAATGGAAGCTCTTAGC+AGG - chr8_4:13666545-13666564 Msa1314650:CDS 40.0%
AACATGCTGTCTAAGCTCAA+AGG + chr8_4:13666784-13666803 None:intergenic 40.0%
ACCCTTCTAACATCAACTCA+TGG + chr8_4:13666876-13666895 None:intergenic 40.0%
CTTCACCCATGTTTGATTGA+TGG + chr8_4:13666930-13666949 None:intergenic 40.0%
TCAAACATGGGTGAAGATCA+TGG - chr8_4:13666934-13666953 Msa1314650:intron 40.0%
! AGGAATTTTCCAGCTAGTCA+TGG - chr8_4:13666985-13667004 Msa1314650:intron 40.0%
GATGATTGTTCCTGTTGTAG+AGG - chr8_4:13667023-13667042 Msa1314650:intron 40.0%
! CCTTCATTTTCCTCTACAAC+AGG + chr8_4:13667036-13667055 None:intergenic 40.0%
CCTGTTGTAGAGGAAAATGA+AGG - chr8_4:13667033-13667052 Msa1314650:intron 40.0%
GAGGAAAATGAAGGTGAATG+TGG - chr8_4:13667042-13667061 Msa1314650:intron 40.0%
GGTGAATGTGGATCCAATAT+TGG - chr8_4:13667054-13667073 Msa1314650:intron 40.0%
AGCAGATGACATATTCTGTG+AGG + chr8_4:13667154-13667173 None:intergenic 40.0%
TGTGACACCTCTATATTGAG+AGG + chr8_4:13667283-13667302 None:intergenic 40.0%
!! CTCAATATAGAGGTGTCACA+AGG - chr8_4:13667283-13667302 Msa1314650:CDS 40.0%
GGAGATATGAAGCTCATCTA+TGG - chr8_4:13667433-13667452 Msa1314650:intron 40.0%
GACAACAGTTGCAAGAAAGA+AGG - chr8_4:13667456-13667475 Msa1314650:intron 40.0%
AAAGAAGGCCAAAGCAGAAA+AGG - chr8_4:13667471-13667490 Msa1314650:CDS 40.0%
! CTTGTCTTCCTTTTCTGCTT+TGG + chr8_4:13667482-13667501 None:intergenic 40.0%
CAAAGCAGAAAAGGAAGACA+AGG - chr8_4:13667480-13667499 Msa1314650:CDS 40.0%
! GGATTCACACGATGATTTTG+CGG - chr8_4:13667528-13667547 Msa1314650:intron 40.0%
! TTTTGCTTTCTTTGCTTGGC+GGG - chr8_4:13667731-13667750 Msa1314650:intron 40.0%
ATCAAGCAGCACTCAAGTAT+TGG - chr8_4:13667968-13667987 Msa1314650:intron 40.0%
TCAAGCAGCACTCAAGTATT+GGG - chr8_4:13667969-13667988 Msa1314650:intron 40.0%
AACAGGGAAGTTTATGTGAG+TGG + chr8_4:13668001-13668020 None:intergenic 40.0%
! AAAAGCAGTGGATTCTCAAG+AGG - chr8_4:13668270-13668289 Msa1314650:intron 40.0%
! AAAGCAGTGGATTCTCAAGA+GGG - chr8_4:13668271-13668290 Msa1314650:intron 40.0%
! GAGGAGTAACAAGGTCTTAT+AGG - chr8_4:13668307-13668326 Msa1314650:CDS 40.0%
CATTAGACATGACACAGACA+CGG + chr8_4:13668636-13668655 None:intergenic 40.0%
ACAAGCTAGAAGGAACAAAG+AGG - chr8_4:13668991-13669010 Msa1314650:CDS 40.0%
TTGAAGTTGTTGATGTTGGG+AGG + chr8_4:13669131-13669150 None:intergenic 40.0%
CATGTTATCCAAAGACACTG+AGG + chr8_4:13669200-13669219 None:intergenic 40.0%
AGTTTGAGCAGTTCAAGAGA+AGG - chr8_4:13669292-13669311 Msa1314650:CDS 40.0%
ACAAGCTTGCAAAATCTCTC+TGG - chr8_4:13669328-13669347 Msa1314650:CDS 40.0%
AAGGCCTAAGATGTTGTGAA+GGG + chr8_4:13669423-13669442 None:intergenic 40.0%
TTGTGTCAAAGCATGTTTCG+AGG - chr8_4:13669684-13669703 Msa1314650:five_prime_UTR 40.0%
GTATTCCAGCAAGCAATGCT+AGG + chr8_4:13666014-13666033 None:intergenic 45.0%
CTTAGCAGGTCACAAACACA+AGG - chr8_4:13666559-13666578 Msa1314650:CDS 45.0%
GGTGAAGATCATGGACTTAG+TGG - chr8_4:13666943-13666962 Msa1314650:intron 45.0%
TGATCATGTCCATGACTAGC+TGG + chr8_4:13666997-13667016 None:intergenic 45.0%
! TCACACGATGATTTTGCGGA+CGG - chr8_4:13667532-13667551 Msa1314650:intron 45.0%
TTTGCTTTCTTTGCTTGGCG+GGG - chr8_4:13667732-13667751 Msa1314650:intron 45.0%
! CAAGCAGCACTCAAGTATTG+GGG - chr8_4:13667970-13667989 Msa1314650:intron 45.0%
GGGAAGTTTATGTGAGTGGA+TGG + chr8_4:13667997-13668016 None:intergenic 45.0%
! AAGCAGTGGATTCTCAAGAG+GGG - chr8_4:13668272-13668291 Msa1314650:intron 45.0%
CCTTGTTACTCCTCTGTACA+TGG + chr8_4:13668301-13668320 None:intergenic 45.0%
CCATGTACAGAGGAGTAACA+AGG - chr8_4:13668298-13668317 Msa1314650:CDS 45.0%
GACACCATCAACATGGAAGA+TGG - chr8_4:13668434-13668453 Msa1314650:intron 45.0%
CTTGCCATCTTCCATGTTGA+TGG + chr8_4:13668441-13668460 None:intergenic 45.0%
TATACGCGCACAACTACTAG+CGG + chr8_4:13668701-13668720 None:intergenic 45.0%
AGCTAGAAGGAACAAAGAGG+TGG - chr8_4:13668994-13669013 Msa1314650:CDS 45.0%
GAAGGCCTAAGATGTTGTGA+AGG + chr8_4:13669424-13669443 None:intergenic 45.0%
! ATCTGAGGCAAAGAAAGGGA+AGG + chr8_4:13669442-13669461 None:intergenic 45.0%
! TGGCATCTGAGGCAAAGAAA+GGG + chr8_4:13669446-13669465 None:intergenic 45.0%
! AGATGCCAGTTTTTGCAGCA+TGG - chr8_4:13669458-13669477 Msa1314650:CDS 45.0%
TCTGTCCATGCTGCAAAAAC+TGG + chr8_4:13669466-13669485 None:intergenic 45.0%
GAAGACCTAGCATTGCTTGC+TGG - chr8_4:13666006-13666025 Msa1314650:three_prime_UTR 50.0%
GCAGAAGCAGAAGCAGAAGA+AGG + chr8_4:13666382-13666401 None:intergenic 50.0%
ACACAGCTAGACTGAGAGCT+AGG + chr8_4:13667126-13667145 None:intergenic 50.0%
GGTAGCAGACACCATCAACA+TGG - chr8_4:13668427-13668446 Msa1314650:intron 50.0%
GGAAGATGGCAAGCTCGAAT+TGG - chr8_4:13668448-13668467 Msa1314650:intron 50.0%
GCTCGAATTGGTAGAGTAGC+TGG - chr8_4:13668460-13668479 Msa1314650:intron 50.0%
GGGACCCTTCACAACATCTT+AGG - chr8_4:13669416-13669435 Msa1314650:CDS 50.0%
! CTGGCATCTGAGGCAAAGAA+AGG + chr8_4:13669447-13669466 None:intergenic 50.0%
GCTGCAAAAACTGGCATCTG+AGG + chr8_4:13669457-13669476 None:intergenic 50.0%
AGAGGGGCTTCCATGTACAG+AGG - chr8_4:13668288-13668307 Msa1314650:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 13665963 13669816 13665963 ID=Msa1314650;Name=Msa1314650
chr8_4 mRNA 13665963 13669816 13665963 ID=Msa1314650-mRNA-1;Parent=Msa1314650;Name=Msa1314650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=290|0.85|1|1|1|1|8|324|654
chr8_4 exon 13665963 13666924 13665963 ID=Msa1314650-mRNA-1:exon:5112;Parent=Msa1314650-mRNA-1
chr8_4 exon 13667268 13667344 13667268 ID=Msa1314650-mRNA-1:exon:5111;Parent=Msa1314650-mRNA-1
chr8_4 exon 13667460 13667510 13667460 ID=Msa1314650-mRNA-1:exon:5110;Parent=Msa1314650-mRNA-1
chr8_4 exon 13667585 13667658 13667585 ID=Msa1314650-mRNA-1:exon:5109;Parent=Msa1314650-mRNA-1
chr8_4 exon 13667762 13667850 13667762 ID=Msa1314650-mRNA-1:exon:5108;Parent=Msa1314650-mRNA-1
chr8_4 exon 13668278 13668360 13668278 ID=Msa1314650-mRNA-1:exon:5107;Parent=Msa1314650-mRNA-1
chr8_4 exon 13668475 13669099 13668475 ID=Msa1314650-mRNA-1:exon:5106;Parent=Msa1314650-mRNA-1
chr8_4 exon 13669199 13669816 13669199 ID=Msa1314650-mRNA-1:exon:5105;Parent=Msa1314650-mRNA-1
chr8_4 five_prime_UTR 13669527 13669816 13669527 ID=Msa1314650-mRNA-1:five_prime_utr;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13669199 13669526 13669199 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13668475 13669099 13668475 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13668278 13668360 13668278 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13667762 13667850 13667762 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13667585 13667658 13667585 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13667460 13667510 13667460 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13667268 13667344 13667268 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 CDS 13666287 13666924 13666287 ID=Msa1314650-mRNA-1:cds;Parent=Msa1314650-mRNA-1
chr8_4 three_prime_UTR 13665963 13666286 13665963 ID=Msa1314650-mRNA-1:three_prime_utr;Parent=Msa1314650-mRNA-1
Gene Sequence

>Msa1314650

ATGAAGAGAATGGAAAACAATGATGATAGTGTTGACATTAACAATGAAAATAACTGGTTAGGTTTTTCACTCTCTCCTCAAATGAATAATATTGGTGTTACTTCACACACTCATCATCATTCACTGCCTTCTTCTGCTTCTGCTTCTGCTTCTGAAGTAGTTCCACTTCAAGCAAGCTTTTACCACTCTTCTCCTCTTAGTAACTATTGTTACTCTTATGGACTTGAACATGAAAATGCTGGCTTGTATTCATTACTTCCCATTATGCCTCTCAAATCTGATGGATCTCTTTATGAAATGGAAGCTCTTAGCAGGTCACAAACACAAGCAATGAGTACTACTTCAGCACCAAAACTAGAGAATTTTTTAGGTAATGAAACTATGGGGACCCCTCATTATGCATGTAGTAGTACTGTCACAGAAACAATGCCTTTGAGCTTAGACAGCATGTTCCAAAATCATATCCAACAAAACATGAACAACCAACAACAGTTGTCATATTATAACTCAACTTTGAGAAACCATGAGTTGATGTTAGAAGGGTCAAAGCAAAGTCAAACTTCAAGTGGAAATTTCCATCAATCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAACTGGGTTTTAAGGAATTTTCCAGCTAGTCATGGACATGATCAGTCAAAGATGATTGTTCCTGTTGTAGAGGAAAATGAAGGTGAATGTGGATCCAATATTGGTTCAATGGCTTATGGAGATTTGCATTCTTTGAGTTTGTCAATGAGTCCTAGCTCTCAGTCTAGCTGTGTTACTACCTCACAGAATATGTCATCTGCTGTTGTTGAAAATTCTGTTGCTATGGATACAAAGAAAAGAGGAAGTGAAAAATTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACCTCTCAATATAGAGGTGTCACAAGGCATAGATGGACTGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTCGAATTGGTAGAGTAGCTGGTAATAAAGATCTATATCTTGGAACTTTCAGTACTCAAGAGGAAGCAGCTGAAGCCTATGACATTGCAGCTATAAAATTCAGAGGAGCAAATGCAGTGACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCTAGTAGTAACCTTCTCAACATTGAACAAGCTAGAAGGAACAAAGAGGTGGTAGATATGAGTACAACTCAATACATTGATCAAAACAAGCCTTCTTCTGCATATGACAACAATAGCACTCAAGAAGCAATTTCAATGCAGAAGAATATGGTTCTGTATCAATCCTCCCAACATCAACAACTTCAACAGAATCAACCAAGATTTGAGAATGAAAGAACTCATCAAACTTTTTCCTCAGTGTCTTTGGATAACATGTTTCATCAAGAAGTAGTTGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGAGAAGGTAGTCCAGATAGAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCAAAACTATTGGTTACTTCTGCTCCAAATAGTAATTTGAATTCTTGGGACCCTTCACAACATCTTAGGCCTTCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCAGCATGGACAGATGCTTAG

Protein sequence

>Msa1314650

MKRMENNDDSVDINNENNWLGFSLSPQMNNIGVTSHTHHHSLPSSASASASEVVPLQASFYHSSPLSNYCYSYGLEHENAGLYSLLPIMPLKSDGSLYEMEALSRSQTQAMSTTSAPKLENFLGNETMGTPHYACSSTVTETMPLSLDSMFQNHIQQNMNNQQQLSYYNSTLRNHELMLEGSKQSQTSSGNFHQSNMGEDHGLSGLKNWVLRNFPASHGHDQSKMIVPVVEENEGECGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVVENSVAMDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLNIEQARRNKEVVDMSTTQYIDQNKPSSAYDNNSTQEAISMQKNMVLYQSSQHQQLQQNQPRFENERTHQTFSSVSLDNMFHQEVVEEASKMRTHVSNASSLATSLSSSREGSPDRTSLQNLSGIMPSTASKLLVTSAPNSNLNSWDPSQHLRPSLSLPQMPVFAAWTDA*