AlfalfaGEDB | Msa1088790

M. sativa cultivar zhongmu-4 / Msa1088790

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0015066 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772
PFAM: PF00197.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088790	XP_003628500.1	96.569	204	7	0	1	204	1	204	1.12e-143	408

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088790	sp\|G7LCV1\|KI106_MEDTR	96.569	204	7	0	1	204	1	204	1.40e-146	408

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088790	A0A2Z6PHW6	71.287	202	56	1	5	204	1	202	4.98e-101	300

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0414410	Msa1088790	0.815826	7.576574e-52	-8.615850e-47
Msa0452900	Msa1088790	0.803094	4.106462e-49	-8.615850e-47
Msa0783160	Msa1088790	0.807288	5.438780e-50	-8.615850e-47
Msa0808010	Msa1088790	0.807345	5.289298e-50	-8.615850e-47
Msa0808020	Msa1088790	0.802584	5.235440e-49	-8.615850e-47
Msa0858980	Msa1088790	0.821199	4.584258e-53	-8.615850e-47
Msa1025360	Msa1088790	0.804460	2.137050e-49	-8.615850e-47
Msa1044840	Msa1088790	0.804702	1.903089e-49	-8.615850e-47
Msa1088790	Msa1190380	0.971811	9.365569e-134	-8.615850e-47
Msa1088790	Msa1287800	0.810115	1.352999e-50	-8.615850e-47

Showing 1 to 10 of 12 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088790	MtrunA17_Chr8g0359161	96.569	204	7	0	1	204	1	204	1.03e-147	408
Msa1088790	MtrunA17_Chr8g0359111	66.832	202	67	0	3	204	1	202	1.50e-103	296
Msa1088790	MtrunA17_Chr1g0173431	68.317	202	61	2	5	204	1	201	4.63e-98	283
Msa1088790	MtrunA17_Chr4g0022761	67.327	202	60	2	5	204	1	198	1.82e-94	273
Msa1088790	MtrunA17_Chr3g0082651	66.667	204	63	3	5	204	1	203	4.02e-94	273
Msa1088790	MtrunA17_Chr3g0082661	67.157	204	62	3	5	204	1	203	5.00e-94	273
Msa1088790	MtrunA17_Chr3g0082681	66.667	204	63	3	5	204	1	203	8.74e-94	272
Msa1088790	MtrunA17_Chr3g0082641	65.686	204	67	2	3	204	1	203	1.70e-93	271
Msa1088790	MtrunA17_Chr3g0082671	65.686	204	67	2	3	204	1	203	6.48e-93	270
Msa1088790	MtrunA17_Chr4g0022751	63.366	202	72	1	5	204	1	202	2.05e-90	263

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088790	AT1G17860.1	30.481	187	115	6	20	203	20	194	1.60e-15	72.0
Msa1088790	AT1G73260.1	31.548	168	106	7	41	203	41	204	5.81e-14	68.2

Showing 1 to 2 of 2 entries

Previous1Next

Find 54 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGGCTATTGTTGTTG+TGG	0.592731	7_3:+2150501	None:intergenic
AACATCGTCGAAGTCGTGAT+GGG	0.515072	7_3:+2150297	None:intergenic
AAGATACTAAGAGTGGAAGA+AGG	0.571477	7_3:-2150195	Msa1088790:CDS
AAGGTATGTATAATATACAG+TGG	0.689864	7_3:-2150096	Msa1088790:CDS
AAGTCGTGATGGGGAGCAAA+AGG	0.500088	7_3:+2150307	None:intergenic
ACAATCAACAGAATGGAGAT+TGG	0.508137	7_3:-2150224	Msa1088790:CDS
ACAGTCGGAGAACCAGTTGA+AGG	0.605474	7_3:-2150469	Msa1088790:CDS
ACATCGTCGAAGTCGTGATG+GGG	0.622395	7_3:+2150298	None:intergenic
AGAACCAGTTGAAGGCGACG+AGG	0.683558	7_3:-2150461	Msa1088790:CDS
AGGGAGGGGACCACCATCAA+GGG	0.484944	7_3:+2149991	None:intergenic

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TACATGAGCAAGAATTATGA+GGG	+	chr7_3:2149998-2150017	None:intergenic	30.0%
ATACATGAGCAAGAATTATG+AGG	+	chr7_3:2149999-2150018	None:intergenic	30.0%
GATCATATGGTAACTTCTTT+AGG	-	chr7_3:2150394-2150413	Msa1088790:CDS	30.0%
ATTATACATACCTTCAAGTG+GGG	+	chr7_3:2150430-2150449	None:intergenic	30.0%
TTCATTTCTGCTGATCATAG+TGG	+	chr7_3:2150139-2150158	None:intergenic	35.0%
TCTCAAGACCAACATGTAAA+GGG	+	chr7_3:2150167-2150186	None:intergenic	35.0%
TTCTCAAGACCAACATGTAA+AGG	+	chr7_3:2150168-2150187	None:intergenic	35.0%
GTTGTGTACAATCAACAGAA+TGG	-	chr7_3:2150301-2150320	Msa1088790:CDS	35.0%
ACAATCAACAGAATGGAGAT+TGG	-	chr7_3:2150308-2150327	Msa1088790:CDS	35.0%
CAATCAACAGAATGGAGATT+GGG	-	chr7_3:2150309-2150328	Msa1088790:CDS	35.0%

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	2149970	2150584	2149970	ID=Msa1088790;Name=Msa1088790
chr7_3	mRNA	2149970	2150584	2149970	ID=Msa1088790-mRNA-1;Parent=Msa1088790;Name=Msa1088790-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|204
chr7_3	exon	2149970	2150584	2149970	ID=Msa1088790-mRNA-1:exon:859;Parent=Msa1088790-mRNA-1
chr7_3	CDS	2149970	2150584	2149970	ID=Msa1088790-mRNA-1:cds;Parent=Msa1088790-mRNA-1

Gene Sequence

>Msa1088790

ATGTCAATGAGATTATCTACTAGAACCCTCATAATTCTTGCTCATGTATGTCTCTTTATAACCACAACAACAATAGCCCAGTTTGTCTTCGACACAGTCGGAGAACCAGTTGAAGGCGACGAGGAATATTTTATCCGTCCAGTTATCACAAACAAAGGAGGACGTTCCACTATGATCAGCAGAAATGAATCATGCCCTTTACATGTTGGTCTTGAGAACACTGGCTTAGGACACGGTCTGGTTGTGAAATTCACACCTTTTGCTCCCCATCACGACTTCGACGATGTTAGGGTTAACAGAGACTTAAGAATAACATTCCAAGCTTCATCAAGTTGTGTACAATCAACAGAATGGAGATTGGGTGAAAAAGATACTAAGAGTGGAAGAAGGTTGATTATCACTGGAAGAGATAGTGCTACTAATGGATCATATGGTAACTTCTTTAGGATTGTAGAGACCCCACTTGAAGGTATGTATAATATACAGTGGTGTCCTACAGAGGTATGTCCTAGTTGTAGATTTGAATGTGGAACTGTTGATATGCTGAATGAGAATGGTAAGATTTTGCTGGCCCTTGATGGTGGTCCCCTCCCTCTTGTTTTCCAGAAAGAATAA

Protein sequence

>Msa1088790

MSMRLSTRTLIILAHVCLFITTTTIAQFVFDTVGEPVEGDEEYFIRPVITNKGGRSTMISRNESCPLHVGLENTGLGHGLVVKFTPFAPHHDFDDVRVNRDLRITFQASSSCVQSTEWRLGEKDTKSGRRLIITGRDSATNGSYGNFFRIVETPLEGMYNIQWCPTEVCPSCRFECGTVDMLNENGKILLALDGGPLPLVFQKE*