AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1092240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1092240 MtrunA17_Chr7g0228641 99.587 484 2 0 1 484 1 484 0.0 989
Msa1092240 MtrunA17_Chr5g0397481 31.839 223 151 1 95 317 159 380 1.63e-29 122
Msa1092240 MtrunA17_Chr4g0035431 32.735 223 149 1 95 317 159 380 1.77e-29 121
Msa1092240 MtrunA17_Chr4g0057761 27.477 222 153 2 117 332 192 411 2.26e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1092240 AT1G60170.1 77.572 486 104 4 1 483 1 484 0.0 712
Msa1092240 AT1G70400.1 68.208 173 43 3 40 211 2 163 1.27e-71 225
Msa1092240 AT1G70400.2 68.675 166 40 3 40 204 2 156 4.01e-68 217
Msa1092240 AT1G70400.3 68.675 166 40 3 40 204 2 156 1.30e-67 218
Msa1092240 AT5G27120.1 28.315 279 194 1 85 357 149 427 1.52e-26 113
Msa1092240 AT3G05060.1 30.472 233 161 1 85 317 150 381 2.19e-26 112
Msa1092240 AT5G27140.2 25.939 293 206 2 89 371 126 417 6.26e-24 104
Msa1092240 AT5G27140.1 25.993 277 195 1 105 371 139 415 1.03e-23 103
Msa1092240 AT1G56110.1 28.378 222 151 2 117 332 192 411 3.10e-19 90.9
Msa1092240 AT3G12860.1 26.818 220 157 1 117 332 192 411 6.64e-19 89.7

Find 141 sgRNAs with CRISPR-Local

Find 533 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCATGGTTCAATTCTTC+TGG 0.203479 7_3:-8746315 None:intergenic
CATTGCACTCCACAATTAAT+TGG 0.222134 7_3:-8741630 None:intergenic
GCTTGTAATGTTCAGCTTCT+AGG 0.223291 7_3:+8742090 Msa1092240:CDS
CTCTGGAAAGCATGCCATTT+TGG 0.243842 7_3:+8746787 Msa1092240:three_prime_UTR
TGATGCCGATACCGCGGATA+TGG 0.260952 7_3:+8739803 Msa1092240:CDS
ATGAAACTGGTTTCATCTTC+AGG 0.268914 7_3:+8746474 Msa1092240:three_prime_UTR
CTGACCCTTGTTGATTTAGA+AGG 0.282273 7_3:+8741802 Msa1092240:CDS
ATTCCTGAAGAGAGCTCTTT+AGG 0.291799 7_3:+8742604 Msa1092240:CDS
TGCCATACTGCTTACCAAAA+TGG 0.293881 7_3:-8746801 None:intergenic
AGACTACCCCACCTTCTTTC+AGG 0.308777 7_3:+8742196 Msa1092240:CDS
AATAATTATTTATGTATTAA+CGG 0.311765 7_3:+8746929 Msa1092240:three_prime_UTR
CTCCAGCATTAACAATTTAC+TGG 0.314665 7_3:-8746388 None:intergenic
TCTAAATTGCTTCATGCATT+GGG 0.314955 7_3:+8746686 Msa1092240:three_prime_UTR
CTGAATCTATCCCATGAAAA+TGG 0.319245 7_3:-8746590 None:intergenic
AGTGGAAGAAGCCCTTAAAA+AGG 0.320806 7_3:+8741561 Msa1092240:CDS
AGAATTTGATTTGGAGAATA+GGG 0.322842 7_3:-8739442 None:intergenic
TCCACAATTAATTGGTATTC+CGG 0.326759 7_3:-8741622 None:intergenic
AGTGGTTTGGGTTGCTTAGC+AGG 0.328136 7_3:-8742360 None:intergenic
TGGAATTTCAGCTTCGTTAT+CGG 0.335741 7_3:-8739679 None:intergenic
TCAGGCACTGGAAGTGGTTT+GGG 0.336565 7_3:-8742372 None:intergenic
TTAGCTAATAGGATGCAATT+TGG 0.339602 7_3:+8742580 Msa1092240:CDS
GACGGTCTGGGCGAGGGTTA+TGG 0.342112 7_3:+8743352 Msa1092240:CDS
GGTTTCATCTTCAGGGATCT+TGG 0.344911 7_3:+8746482 Msa1092240:three_prime_UTR
ATCAGGCACTGGAAGTGGTT+TGG 0.346535 7_3:-8742373 None:intergenic
GCGCGTGTTGTTAAGAAGAT+AGG 0.350743 7_3:+8741766 Msa1092240:CDS
ACGCGAGCGAGAATTTGATT+TGG 0.356815 7_3:-8739451 None:intergenic
TGGGGTAGTCTGAAATATTT+CGG 0.362627 7_3:-8742184 None:intergenic
TTACCTAAAGAGCTCTCTTC+AGG 0.370379 7_3:-8742607 None:intergenic
GAATGTGAATGAATGAATAA+TGG 0.381718 7_3:-8739415 None:intergenic
GGCGACCCATCTGGGAAAAC+TGG 0.383394 7_3:+8742282 Msa1092240:CDS
GTCTAAATTGCTTCATGCAT+TGG 0.389423 7_3:+8746685 Msa1092240:three_prime_UTR
ACATGAGGAAGTTAGCTAAT+AGG 0.389682 7_3:+8742569 Msa1092240:CDS
TCTTGTTCTGTCTACTGAAT+TGG 0.391525 7_3:+8746351 Msa1092240:three_prime_UTR
CCGTTGATTATGTATGAAAC+TGG 0.398375 7_3:+8746461 Msa1092240:three_prime_UTR
TCAATACGTGGCGACCCATC+TGG 0.403116 7_3:+8742273 Msa1092240:CDS
GTCTTACTAAGGACTTCTTC+TGG 0.404401 7_3:-8741892 None:intergenic
AGCACCTACTTCTCTGAAAC+AGG 0.405761 7_3:+8746277 Msa1092240:CDS
GAGAATTTGATTTGGAGAAT+AGG 0.411971 7_3:-8739443 None:intergenic
CCTAATGTTTCAGCTATAGT+TGG 0.414992 7_3:+8742003 Msa1092240:CDS
TATCCAAGTCATCGTAGTTA+AGG 0.420856 7_3:-8739863 None:intergenic
GTTTGGGTTGCTTAGCAGGA+GGG 0.431809 7_3:-8742356 None:intergenic
ACAACACGCGCATAATCAAT+TGG 0.434231 7_3:-8741754 None:intergenic
GGAAAACTGGAAGATCTCTC+AGG 0.439060 7_3:+8742295 Msa1092240:CDS
AAAGGGTTCAGATGTCTCTC+AGG 0.439418 7_3:+8741579 Msa1092240:CDS
AGAGAGGTGGTCGCAGACTT+AGG 0.442778 7_3:+8742412 Msa1092240:CDS
TAAGAAGATAGGAAATGAAA+TGG 0.444155 7_3:+8741777 Msa1092240:CDS
GACATCACTTGATAGGTCTA+TGG 0.446618 7_3:+8746411 Msa1092240:three_prime_UTR
TACCAGTAAATTGTTAATGC+TGG 0.446919 7_3:+8746386 Msa1092240:three_prime_UTR
TTCATCCATATCCGCGGTAT+CGG 0.450187 7_3:-8739808 None:intergenic
TATGGAATGCTTGGTCAGGC+TGG 0.453640 7_3:+8743370 Msa1092240:CDS
ATTAGATTTAGAAGATGATC+CGG 0.454370 7_3:+8741603 Msa1092240:CDS
AAGGTGATATCATGATAATT+CGG 0.455723 7_3:+8746899 Msa1092240:three_prime_UTR
TTGGGTTGCTTAGCAGGAGG+GGG 0.455973 7_3:-8742354 None:intergenic
TTTACCCTCAGCTATTATCA+TGG 0.456803 7_3:+8741828 Msa1092240:CDS
GGTAGCAGCGGTGCTACGTC+TGG 0.457836 7_3:+8743619 Msa1092240:CDS
TGAAACTGGTTTCATCTTCA+GGG 0.457982 7_3:+8746475 Msa1092240:three_prime_UTR
GCATCTTTGCAAGAGCTGAT+AGG 0.460981 7_3:-8742065 None:intergenic
TATAGGGGACGGTCTGGGCG+AGG 0.462206 7_3:+8743345 Msa1092240:intron
CGTTCCTGTTTCAGAGAAGT+AGG 0.462246 7_3:-8746281 None:intergenic
TGCCATCAGGTATGCAATAA+CGG 0.462748 7_3:+8742546 Msa1092240:intron
TGATGCAGACCAAGCTTTCG+TGG 0.466687 7_3:+8746632 Msa1092240:three_prime_UTR
TTTGGGTTGCTTAGCAGGAG+GGG 0.467451 7_3:-8742355 None:intergenic
GGCAAGCTTCGTGTTTCAGC+AGG 0.467990 7_3:+8743397 Msa1092240:CDS
TGCTGTCGCGGCTAAACTCA+TGG 0.470047 7_3:+8742029 Msa1092240:CDS
CTAAGGACTTCTTCTGGAAG+TGG 0.472926 7_3:-8741886 None:intergenic
CCAACTATAGCTGAAACATT+AGG 0.474131 7_3:-8742003 None:intergenic
TCTTCATTGCCACGAAAGCT+TGG 0.474476 7_3:-8746641 None:intergenic
TGAACCATGCACGAACCGTT+CGG 0.476109 7_3:+8746325 Msa1092240:exon
TTGATTTGGAGAATAGGGTT+GGG 0.477182 7_3:-8739437 None:intergenic
TTTGATTTGGAGAATAGGGT+TGG 0.479365 7_3:-8739438 None:intergenic
AATGTGAATGAATGAATAAT+GGG 0.486881 7_3:-8739414 None:intergenic
TCAGAATCAGGCACTGGAAG+TGG 0.495683 7_3:-8742378 None:intergenic
GGCGAGGGTTATGGAATGCT+TGG 0.495918 7_3:+8743361 Msa1092240:CDS
CTAATGTTTCAGCTATAGTT+GGG 0.497648 7_3:+8742004 Msa1092240:CDS
GCTGGAGGACATCACTTGAT+AGG 0.498923 7_3:+8746404 Msa1092240:three_prime_UTR
TAAGTGAAACTAACCTGCAC+TGG 0.500864 7_3:-8743667 None:intergenic
CATTGTAAAAGTCATATACA+AGG 0.501682 7_3:-8746519 None:intergenic
TCTTGCATTTACTCCAGTGC+AGG 0.503929 7_3:+8743654 Msa1092240:CDS
CGTGTTATAGGGGACGGTCT+GGG 0.509770 7_3:+8743340 Msa1092240:intron
CAGGCTCATGCACACCAACT+TGG 0.515471 7_3:+8746241 Msa1092240:CDS
GGGTTATGGAATGCTTGGTC+AGG 0.517944 7_3:+8743366 Msa1092240:CDS
AACTCCGAACGGTTCGTGCA+TGG 0.519626 7_3:-8746329 None:intergenic
AAACTCATGGGAACGGCTGG+TGG 0.520050 7_3:+8742042 Msa1092240:CDS
GAGATACGTCGATGTTATGC+AGG 0.523614 7_3:+8739911 Msa1092240:CDS
AAGCCTCAATTGTCTTACTA+AGG 0.523705 7_3:-8741903 None:intergenic
TGTGGAGTGCAATGCATTGT+CGG 0.524364 7_3:+8741639 Msa1092240:CDS
CAATACGTGGCGACCCATCT+GGG 0.525813 7_3:+8742274 Msa1092240:CDS
GCTAAACTCATGGGAACGGC+TGG 0.528060 7_3:+8742039 Msa1092240:CDS
TGACCCTTGTTGATTTAGAA+GGG 0.529551 7_3:+8741803 Msa1092240:CDS
CATGCACACCAACTTGGTAG+TGG 0.531759 7_3:+8746247 Msa1092240:CDS
TGTACTAGTGACTCAAGCTC+TGG 0.535918 7_3:-8741727 None:intergenic
AGTCCTTAGTAAGACAATTG+AGG 0.540144 7_3:+8741900 Msa1092240:CDS
GGTTTGGGTTGCTTAGCAGG+AGG 0.541075 7_3:-8742357 None:intergenic
AAACCTTAACTACGATGACT+TGG 0.541630 7_3:+8739860 Msa1092240:CDS
TCTGTCTACTGAATTGGTGA+TGG 0.544062 7_3:+8746357 Msa1092240:three_prime_UTR
AGATTCAAGGAAAAGAGTTA+TGG 0.545273 7_3:+8743598 Msa1092240:intron
TTAGGCTCAGAATCAGGCAC+TGG 0.553235 7_3:-8742384 None:intergenic
ATGTTGTATGAGAGAGGGGT+TGG 0.555876 7_3:-8739524 None:intergenic
GATTGAGCTCTCAAATCCAC+AGG 0.566737 7_3:+8746222 Msa1092240:CDS
ATAGGGGACGGTCTGGGCGA+GGG 0.567332 7_3:+8743346 Msa1092240:intron
ATGCTTGGTCAGGCTGGCAG+TGG 0.573270 7_3:+8743376 Msa1092240:CDS
CATGCTCGCATCCTGAAAGA+AGG 0.573571 7_3:-8742207 None:intergenic
TTTGAGTTCCACTACCAAGT+TGG 0.575832 7_3:-8746255 None:intergenic
CTCGCATCCTGAAAGAAGGT+GGG 0.575987 7_3:-8742203 None:intergenic
GACTTAGGAAGATGAAGGAG+AGG 0.578267 7_3:+8742427 Msa1092240:CDS
GTACCATGTTGTATGAGAGA+GGG 0.588106 7_3:-8739529 None:intergenic
AGTACCATGTTGTATGAGAG+AGG 0.590651 7_3:-8739530 None:intergenic
AAGGGTTCAGATGTCTCTCA+GGG 0.591056 7_3:+8741580 Msa1092240:CDS
GCTCGCATCCTGAAAGAAGG+TGG 0.594548 7_3:-8742204 None:intergenic
TCGCAGACTTAGGAAGATGA+AGG 0.594846 7_3:+8742422 Msa1092240:CDS
AGAAGCTGAACATTACAAGC+AGG 0.596815 7_3:-8742087 None:intergenic
GATGCGAGCATGCCGACTCG+TGG 0.599796 7_3:+8742218 Msa1092240:CDS
TCCGGAATACCAATTAATTG+TGG 0.604953 7_3:+8741621 Msa1092240:CDS
CTAAATTGCTTCATGCATTG+GGG 0.611869 7_3:+8746687 Msa1092240:three_prime_UTR
GCTGTCGCGGCTAAACTCAT+GGG 0.612085 7_3:+8742030 Msa1092240:CDS
CCAGTTTCATACATAATCAA+CGG 0.613395 7_3:-8746461 None:intergenic
GAAAACTGGAAGATCTCTCA+GGG 0.616085 7_3:+8742296 Msa1092240:CDS
TGATGTTGCAGTGGAGAACC+CGG 0.623712 7_3:-8742133 None:intergenic
TGATAATGATGCCGATACCG+CGG 0.626505 7_3:+8739797 Msa1092240:CDS
AGTTGGTGTGCATGAGCCTG+TGG 0.630817 7_3:-8746238 None:intergenic
TACCATGTTGTATGAGAGAG+GGG 0.631867 7_3:-8739528 None:intergenic
CGCGGCTAAACTCATGGGAA+CGG 0.637026 7_3:+8742035 Msa1092240:CDS
CAGTAAATTGTTAATGCTGG+AGG 0.637788 7_3:+8746389 Msa1092240:three_prime_UTR
GAAAAGAGTTATGGTAGCAG+CGG 0.638589 7_3:+8743607 Msa1092240:CDS
TGGAGTAAATGCAAGACTTG+AGG 0.638755 7_3:-8743647 None:intergenic
GACAACCATGATAATAGCTG+AGG 0.641630 7_3:-8741833 None:intergenic
ATGAAATTGTGATGTTGCAG+TGG 0.641717 7_3:-8742142 None:intergenic
AATGAATGAATAATGGGTGT+CGG 0.643804 7_3:-8739408 None:intergenic
TAGACTTTGCAGCCACGAGT+CGG 0.644129 7_3:-8742230 None:intergenic
ATTGTAAAAGTCATATACAA+GGG 0.650738 7_3:-8746518 None:intergenic
GCAACATCACAATTTCATGT+CGG 0.651006 7_3:+8742147 Msa1092240:CDS
AAAGCCCTTCTAAATCAACA+AGG 0.654153 7_3:-8741807 None:intergenic
GACAGAACAAGAACTCCGAA+CGG 0.661657 7_3:-8746340 None:intergenic
GGTATGCAATAACGGACATG+AGG 0.662416 7_3:+8742554 Msa1092240:intron
ACAACCATGATAATAGCTGA+GGG 0.664208 7_3:-8741832 None:intergenic
TATAGTTGGGAGTGCTGTCG+CGG 0.691701 7_3:+8742017 Msa1092240:CDS
AACCCCTCTCTCATACAACA+TGG 0.692837 7_3:+8739526 Msa1092240:exon
AAGCCCTTCTAAATCAACAA+GGG 0.693742 7_3:-8741806 None:intergenic
GACATCTTCATCCATATCCG+CGG 0.703058 7_3:-8739814 None:intergenic
GCACGTGTAGACTCAATACG+TGG 0.742395 7_3:+8742261 Msa1092240:CDS
GATATGGATGAAGATGTCGA+TGG 0.757250 7_3:+8739819 Msa1092240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATATTTGAATTTTTTATAT+AGG - chr7_3:8740173-8740192 None:intergenic 10.0%
!!! TTATTAATTTATGTATTTTC+AGG + chr7_3:8746198-8746217 Msa1092240:intron 10.0%
!!! TATTAATTTATGTATTTTCA+GGG + chr7_3:8746199-8746218 Msa1092240:intron 10.0%
!! TAATTAAGAATAAAAAATGA+TGG - chr7_3:8746876-8746895 None:intergenic 10.0%
!!! TTTTTATTCTTAATTATGTA+AGG + chr7_3:8746880-8746899 Msa1092240:three_prime_UTR 10.0%
!!! CATTGTATTTTTTTCTAAAT+TGG - chr7_3:8740094-8740113 None:intergenic 15.0%
!! TGAAAGAAAAATTGAAAAAT+TGG - chr7_3:8740843-8740862 None:intergenic 15.0%
!!! AAAAAAATTCTTTTTCGTTT+CGG - chr7_3:8741377-8741396 None:intergenic 15.0%
!!! AAAAGAATTTTTTTATGCTT+TGG + chr7_3:8741383-8741402 Msa1092240:intron 15.0%
!!! TTTTTTTTGCACTAAAATTA+AGG + chr7_3:8742719-8742738 Msa1092240:intron 15.0%
!! ATTAATATAACTAGAATAAC+AGG - chr7_3:8742878-8742897 None:intergenic 15.0%
!!! TAAATTTTTTGCCAATTTTT+AGG + chr7_3:8742966-8742985 Msa1092240:intron 15.0%
!! TAATGCATATATTAGAAAAA+TGG + chr7_3:8743024-8743043 Msa1092240:intron 15.0%
!! GGAACATAAAAATATAAATA+AGG - chr7_3:8743321-8743340 None:intergenic 15.0%
!! TAGTTAAAATTATCTATGTT+AGG + chr7_3:8745326-8745345 Msa1092240:intron 15.0%
!!! ATTTTTAATGATTAGAGTAA+GGG + chr7_3:8745955-8745974 Msa1092240:intron 15.0%
!!! ATTAATTTATGTATTTTCAG+GGG + chr7_3:8746200-8746219 Msa1092240:intron 15.0%
!! CTTCAAAAAAAATGTATTAA+CGG + chr7_3:8746959-8746978 Msa1092240:three_prime_UTR 15.0%
!! AATGTGAATGAATGAATAAT+GGG - chr7_3:8739417-8739436 None:intergenic 20.0%
!! ACAAAAATTGGAAAAATGTT+AGG - chr7_3:8739611-8739630 None:intergenic 20.0%
!! ATCTACATATGTTTCAAAAT+TGG + chr7_3:8740123-8740142 Msa1092240:intron 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr7_3:8740250-8740269 None:intergenic 20.0%
!!! TATTTATTGTTTCTTCTCAT+AGG + chr7_3:8740462-8740481 Msa1092240:intron 20.0%
!!! ATTTTGTAGTACTTTTTCTT+AGG + chr7_3:8742459-8742478 Msa1092240:intron 20.0%
!! AGATCAAGAATTAGAAAAAA+AGG - chr7_3:8742515-8742534 None:intergenic 20.0%
!! GAAATAATGATTAGATAGAA+GGG + chr7_3:8742741-8742760 Msa1092240:intron 20.0%
!! AAATAATGATTAGATAGAAG+GGG + chr7_3:8742742-8742761 Msa1092240:intron 20.0%
!! AATAATTAATAGGAATCACA+AGG - chr7_3:8742852-8742871 None:intergenic 20.0%
!! TAACAGGAGTAATAATTAAT+AGG - chr7_3:8742862-8742881 None:intergenic 20.0%
!! TCTATTCAAATATATCAAAC+AGG + chr7_3:8742936-8742955 Msa1092240:intron 20.0%
!!! TATGCATTATTTTTCATAGT+TGG - chr7_3:8743013-8743032 None:intergenic 20.0%
!! TAAAAACTATTACAAACCTT+GGG + chr7_3:8743094-8743113 Msa1092240:intron 20.0%
!! TCTTCATAAAATTAGGTATT+AGG - chr7_3:8743221-8743240 None:intergenic 20.0%
!! AAATTTAGGAACATAATATG+TGG + chr7_3:8743756-8743775 Msa1092240:intron 20.0%
!!! ATATGATAATGATCACTAAA+AGG + chr7_3:8744001-8744020 Msa1092240:intron 20.0%
!!! CGTCTTTAACATTAATTTTA+AGG - chr7_3:8744282-8744301 None:intergenic 20.0%
!! AACAACTGTAATATATTCTA+TGG + chr7_3:8744598-8744617 Msa1092240:intron 20.0%
!! TGTAATATATTCTATGGTTA+TGG + chr7_3:8744604-8744623 Msa1092240:intron 20.0%
!!! TTTCAGTTTTTGTAGTTTAT+GGG - chr7_3:8744737-8744756 None:intergenic 20.0%
!!! TTTTCAGTTTTTGTAGTTTA+TGG - chr7_3:8744738-8744757 None:intergenic 20.0%
!!! TTATGTTGTTTATCCAAATA+GGG - chr7_3:8744996-8745015 None:intergenic 20.0%
!!! CATTTTTAATGATTAGAGTA+AGG + chr7_3:8745954-8745973 Msa1092240:intron 20.0%
!! TATCATGAATGATGAAAATT+TGG + chr7_3:8746101-8746120 Msa1092240:intron 20.0%
!! ATCATGAATGATGAAAATTT+GGG + chr7_3:8746102-8746121 Msa1092240:intron 20.0%
!! ATTGTAAAAGTCATATACAA+GGG - chr7_3:8746521-8746540 None:intergenic 20.0%
!! ATGATACTAACTAAAAACAT+GGG - chr7_3:8746723-8746742 None:intergenic 20.0%
!! AATGATACTAACTAAAAACA+TGG - chr7_3:8746724-8746743 None:intergenic 20.0%
!!! AACCATCATTTATTTTTTCA+AGG + chr7_3:8746846-8746865 Msa1092240:three_prime_UTR 20.0%
!!! ACCATCATTTATTTTTTCAA+GGG + chr7_3:8746847-8746866 Msa1092240:three_prime_UTR 20.0%
! GAATGTGAATGAATGAATAA+TGG - chr7_3:8739418-8739437 None:intergenic 25.0%
!!! AGAATTTGATTTGGAGAATA+GGG - chr7_3:8739445-8739464 None:intergenic 25.0%
! AGAAAGAATTTAGAAGAAAG+AGG - chr7_3:8739559-8739578 None:intergenic 25.0%
!! ATTTTTCCAATTTTTGTTGC+AGG + chr7_3:8739614-8739633 Msa1092240:intron 25.0%
! AAAAAAGAAACTATACTCAC+TGG - chr7_3:8739702-8739721 None:intergenic 25.0%
!!! ATGATTTTGTTTTTTGTGTG+TGG + chr7_3:8739735-8739754 Msa1092240:intron 25.0%
!!! ATGTGGTTGATTTTTATCTT+AGG + chr7_3:8739773-8739792 Msa1092240:intron 25.0%
! ATTGCTAAAGCATAAAAAGT+AGG + chr7_3:8740041-8740060 Msa1092240:intron 25.0%
! TTGCTAAAGCATAAAAAGTA+GGG + chr7_3:8740042-8740061 Msa1092240:intron 25.0%
! TTTAGTGTAATTACAAGTGT+CGG + chr7_3:8740282-8740301 Msa1092240:intron 25.0%
! AAACAGAACAAAACAAATTC+CGG - chr7_3:8740433-8740452 None:intergenic 25.0%
! AAAAACAAAGCTATAGACAA+CGG - chr7_3:8740515-8740534 None:intergenic 25.0%
! GATCTAGAAGAGATAAAATT+TGG - chr7_3:8740679-8740698 None:intergenic 25.0%
! ATATCCTTATTCCTTAACAA+TGG - chr7_3:8740706-8740725 None:intergenic 25.0%
! CAAAAACACTAGTTCAAAAA+AGG - chr7_3:8741131-8741150 None:intergenic 25.0%
!!! TGAGAGTATTATAAACAACA+TGG + chr7_3:8741196-8741215 Msa1092240:intron 25.0%
!!! TAAACAACATGGATTAGATT+TGG + chr7_3:8741207-8741226 Msa1092240:intron 25.0%
!!! TCCTTCCTTATTTTTTTCAA+AGG + chr7_3:8741268-8741287 Msa1092240:intron 25.0%
! TTTCAAAACAACAAGAAACA+AGG - chr7_3:8741517-8741536 None:intergenic 25.0%
! ATTAGATTTAGAAGATGATC+CGG + chr7_3:8741603-8741622 Msa1092240:CDS 25.0%
! TAAGAAGATAGGAAATGAAA+TGG + chr7_3:8741777-8741796 Msa1092240:CDS 25.0%
!! TGATTTTGTAGAAAGTAGAA+TGG + chr7_3:8741969-8741988 Msa1092240:CDS 25.0%
!! GATTTTGTAGAAAGTAGAAT+GGG + chr7_3:8741970-8741989 Msa1092240:CDS 25.0%
! TCCATAAAAAAATTGAGAAG+TGG + chr7_3:8742325-8742344 Msa1092240:CDS 25.0%
!!! GTTAAGGGTATATTTCTTTT+TGG + chr7_3:8742489-8742508 Msa1092240:intron 25.0%
! TACAAATGTAAATCAGATCA+GGG - chr7_3:8742653-8742672 None:intergenic 25.0%
! GGAAATAATGATTAGATAGA+AGG + chr7_3:8742740-8742759 Msa1092240:intron 25.0%
!!! TTTTTTGCCAATTTTTAGGT+TGG + chr7_3:8742970-8742989 Msa1092240:intron 25.0%
! TTACAAACCAACCTAAAAAT+TGG - chr7_3:8742980-8742999 None:intergenic 25.0%
!! ATGTCGAAAACAACAATTTT+GGG + chr7_3:8743055-8743074 Msa1092240:intron 25.0%
! GTAAAAACTATTACAAACCT+TGG + chr7_3:8743093-8743112 Msa1092240:intron 25.0%
!!! ATTAGGAGTCTTATTATGTT+GGG - chr7_3:8743204-8743223 None:intergenic 25.0%
!!! TATTAGGAGTCTTATTATGT+TGG - chr7_3:8743205-8743224 None:intergenic 25.0%
! CATTCTGTCTTCATAAAATT+AGG - chr7_3:8743228-8743247 None:intergenic 25.0%
!! ATTTTTATGTTCCGTGTTAT+AGG + chr7_3:8743328-8743347 Msa1092240:intron 25.0%
!! TTTTTATGTTCCGTGTTATA+GGG + chr7_3:8743329-8743348 Msa1092240:intron 25.0%
!! ATTTTCATTTGTCAGATTCA+AGG + chr7_3:8743585-8743604 Msa1092240:intron 25.0%
! AATTGATGTGAAGCAAATTT+AGG + chr7_3:8743742-8743761 Msa1092240:intron 25.0%
! GGTATATTATAATACAACTG+AGG + chr7_3:8743801-8743820 Msa1092240:intron 25.0%
! TTATTATTTGTCCCAAAAGA+TGG - chr7_3:8743941-8743960 None:intergenic 25.0%
! TAGAGAGAAATCACATATAT+TGG - chr7_3:8744034-8744053 None:intergenic 25.0%
!!! ATTCTAAAACACTTCATCTA+AGG - chr7_3:8744083-8744102 None:intergenic 25.0%
! GGAATAGAATCATCATAAAA+TGG - chr7_3:8744157-8744176 None:intergenic 25.0%
!!! TGATAGCTTTTTTAAGTGAA+GGG - chr7_3:8744476-8744495 None:intergenic 25.0%
!!! TTGATAGCTTTTTTAAGTGA+AGG - chr7_3:8744477-8744496 None:intergenic 25.0%
! TATATTCTATGGTTATGGAT+TGG + chr7_3:8744609-8744628 Msa1092240:intron 25.0%
! ATATTCTATGGTTATGGATT+GGG + chr7_3:8744610-8744629 Msa1092240:intron 25.0%
! GAGGAAATATCATATGAATT+TGG - chr7_3:8744830-8744849 None:intergenic 25.0%
! ATAAAAGATGGATATAAGTG+AGG - chr7_3:8744849-8744868 None:intergenic 25.0%
!! CTTATTAAACTGTAGTCTTT+TGG + chr7_3:8744954-8744973 Msa1092240:intron 25.0%
!! GTTATGTTGTTTATCCAAAT+AGG - chr7_3:8744997-8745016 None:intergenic 25.0%
! ACTTATGTAAGTTTATCTAC+TGG - chr7_3:8745171-8745190 None:intergenic 25.0%
! TATTCAGTTAGATACAGTAA+GGG - chr7_3:8745207-8745226 None:intergenic 25.0%
! TAAACAAATTTACCACTTGT+TGG - chr7_3:8745239-8745258 None:intergenic 25.0%
!!! TCCACTTCTAATTATTTTGA+TGG - chr7_3:8745284-8745303 None:intergenic 25.0%
! TAATTATTACAAACAACTGC+TGG - chr7_3:8745418-8745437 None:intergenic 25.0%
! AGCAGTTGTTTGTAATAATT+AGG + chr7_3:8745417-8745436 Msa1092240:intron 25.0%
! GTTGTTTGTAATAATTAGGA+AGG + chr7_3:8745421-8745440 Msa1092240:intron 25.0%
! TGTAATAATTAGGAAGGAAT+AGG + chr7_3:8745427-8745446 Msa1092240:intron 25.0%
! GTAATAATTAGGAAGGAATA+GGG + chr7_3:8745428-8745447 Msa1092240:intron 25.0%
! CCAGATGAAGAAAAATAAAA+GGG - chr7_3:8745519-8745538 None:intergenic 25.0%
! TCCAGATGAAGAAAAATAAA+AGG - chr7_3:8745520-8745539 None:intergenic 25.0%
! TTTATTGAGAAATTCCATCA+GGG - chr7_3:8745552-8745571 None:intergenic 25.0%
! AAAGCTAGATACTAATTTCT+AGG - chr7_3:8745672-8745691 None:intergenic 25.0%
! TTTCGTAACAAAATACCAAA+TGG - chr7_3:8745825-8745844 None:intergenic 25.0%
! CATTGTAAAAGTCATATACA+AGG - chr7_3:8746522-8746541 None:intergenic 25.0%
! TACTAAGAATAAAAACCTCA+AGG - chr7_3:8746545-8746564 None:intergenic 25.0%
!! GAGGTTTTTATTCTTAGTAA+TGG + chr7_3:8746546-8746565 Msa1092240:three_prime_UTR 25.0%
!! ATCAATCTATACCATTTTCA+TGG + chr7_3:8746579-8746598 Msa1092240:three_prime_UTR 25.0%
!! TCAATCTATACCATTTTCAT+GGG + chr7_3:8746580-8746599 Msa1092240:three_prime_UTR 25.0%
! TCCCTTGAAAAAATAAATGA+TGG - chr7_3:8746851-8746870 None:intergenic 25.0%
! AAGGTGATATCATGATAATT+CGG + chr7_3:8746899-8746918 Msa1092240:three_prime_UTR 25.0%
!! GAGAATTTGATTTGGAGAAT+AGG - chr7_3:8739446-8739465 None:intergenic 30.0%
GGTTAAATTGATGTGTAATG+TGG + chr7_3:8739756-8739775 Msa1092240:intron 30.0%
! AATCTTCAATCACGGTTTTA+CGG - chr7_3:8740395-8740414 None:intergenic 30.0%
! ATTATCACTTAAGTTGTGTC+TGG + chr7_3:8740586-8740605 Msa1092240:intron 30.0%
CTTATTCCTTAACAATGGAA+AGG - chr7_3:8740701-8740720 None:intergenic 30.0%
CTTTCCATTGTTAAGGAATA+AGG + chr7_3:8740699-8740718 Msa1092240:intron 30.0%
GGAATAAGGATATAATGACA+TGG + chr7_3:8740713-8740732 Msa1092240:intron 30.0%
AAAAATAAGGAAGGATGAAG+TGG - chr7_3:8741263-8741282 None:intergenic 30.0%
! GCCTTTGAAAAAAATAAGGA+AGG - chr7_3:8741272-8741291 None:intergenic 30.0%
! AGAGGCCTTTGAAAAAAATA+AGG - chr7_3:8741276-8741295 None:intergenic 30.0%
!! TTTATGCTTTGGAGCAAATT+AGG + chr7_3:8741394-8741413 Msa1092240:intron 30.0%
AGGAAACAAAGAAACAATGA+AGG - chr7_3:8741497-8741516 None:intergenic 30.0%
GAAATGCTTCTAATTGTCTA+TGG + chr7_3:8741533-8741552 Msa1092240:intron 30.0%
TCCACAATTAATTGGTATTC+CGG - chr7_3:8741625-8741644 None:intergenic 30.0%
! ATTTTATTCGCGACAAGTAT+CGG + chr7_3:8741695-8741714 Msa1092240:CDS 30.0%
CTAATGTTTCAGCTATAGTT+GGG + chr7_3:8742004-8742023 Msa1092240:CDS 30.0%
!!! GCCACTTCTCAATTTTTTTA+TGG - chr7_3:8742329-8742348 None:intergenic 30.0%
!!! TAGTACTTTTTCTTAGGTTG+CGG + chr7_3:8742465-8742484 Msa1092240:intron 30.0%
TTAGCTAATAGGATGCAATT+TGG + chr7_3:8742580-8742599 Msa1092240:CDS 30.0%
CTACAAATGTAAATCAGATC+AGG - chr7_3:8742654-8742673 None:intergenic 30.0%
! CATGTCGAAAACAACAATTT+TGG + chr7_3:8743054-8743073 Msa1092240:intron 30.0%
!!! GAAAACAACAATTTTGGGAT+TGG + chr7_3:8743060-8743079 Msa1092240:intron 30.0%
ACTAGTGTGACTTAGATTAT+TGG - chr7_3:8743153-8743172 None:intergenic 30.0%
! TTTTATGTTCCGTGTTATAG+GGG + chr7_3:8743330-8743349 Msa1092240:intron 30.0%
!! AGAACTAAAAGCACTAAGAA+AGG - chr7_3:8743462-8743481 None:intergenic 30.0%
GTCCTGTTTAATTGATTATG+TGG + chr7_3:8743496-8743515 Msa1092240:intron 30.0%
TGCCACATAATCAATTAAAC+AGG - chr7_3:8743501-8743520 None:intergenic 30.0%
TTTAGTAAGATAACTGAGAC+AGG - chr7_3:8743542-8743561 None:intergenic 30.0%
AGATTCAAGGAAAAGAGTTA+TGG + chr7_3:8743598-8743617 Msa1092240:intron 30.0%
TTTAGCTGCATAAATAGTGT+CGG + chr7_3:8743719-8743738 Msa1092240:intron 30.0%
TGCCAAAATAAATACCACAA+CGG + chr7_3:8743850-8743869 Msa1092240:intron 30.0%
CTCTCAAATTGTTGTATCAA+TGG + chr7_3:8743974-8743993 Msa1092240:intron 30.0%
GAGAAATCACATATATTGGT+AGG - chr7_3:8744030-8744049 None:intergenic 30.0%
TATGTGATTTCTCTCTATCT+AGG + chr7_3:8744037-8744056 Msa1092240:intron 30.0%
ATCATAAAATGGCTTCTGAA+AGG - chr7_3:8744146-8744165 None:intergenic 30.0%
GAACAATTAAGGAGAAGATA+TGG - chr7_3:8744454-8744473 None:intergenic 30.0%
TTAAGTGAAGGGAACAATTA+AGG - chr7_3:8744465-8744484 None:intergenic 30.0%
AAGTGTTTGAAGGAGATATA+AGG - chr7_3:8744519-8744538 None:intergenic 30.0%
ATACTGTAACGCTAATTGAT+AGG + chr7_3:8744676-8744695 Msa1092240:intron 30.0%
TATCATATGAATTTGGCAGA+GGG - chr7_3:8744823-8744842 None:intergenic 30.0%
ATATCATATGAATTTGGCAG+AGG - chr7_3:8744824-8744843 None:intergenic 30.0%
TTCTGACGTTCAATAAAAGA+TGG - chr7_3:8744861-8744880 None:intergenic 30.0%
TATCTGAATTATTGCCTCAA+TGG - chr7_3:8744898-8744917 None:intergenic 30.0%
ATTGAGGCAATAATTCAGAT+AGG + chr7_3:8744897-8744916 Msa1092240:intron 30.0%
TTTAATAAGTGAGAAGACCA+GGG - chr7_3:8744943-8744962 None:intergenic 30.0%
!! TTACATAAGTTGATGCAAAC+AGG + chr7_3:8745181-8745200 Msa1092240:intron 30.0%
CTATTCAGTTAGATACAGTA+AGG - chr7_3:8745208-8745227 None:intergenic 30.0%
ATAGAATCTATTCCAACAAG+TGG + chr7_3:8745224-8745243 Msa1092240:intron 30.0%
ATATGAGTTGCAAATTTGTG+AGG + chr7_3:8745258-8745277 Msa1092240:intron 30.0%
GCCATCAAAATAATTAGAAG+TGG + chr7_3:8745280-8745299 Msa1092240:intron 30.0%
!!! CCCTTTTATTTTTCTTCATC+TGG + chr7_3:8745516-8745535 Msa1092240:intron 30.0%
CTTTATTGAGAAATTCCATC+AGG - chr7_3:8745553-8745572 None:intergenic 30.0%
AAGACAAAAATAGATACGAG+TGG - chr7_3:8745580-8745599 None:intergenic 30.0%
TAACTTGATAAGGTTCAACT+AGG - chr7_3:8745616-8745635 None:intergenic 30.0%
AGTTGAACCTTATCAAGTTA+CGG + chr7_3:8745616-8745635 Msa1092240:intron 30.0%
AAGTCTTCTCAAAGCAAAAA+TGG - chr7_3:8745750-8745769 None:intergenic 30.0%
GTAACAAAATACCAAATGGA+GGG - chr7_3:8745821-8745840 None:intergenic 30.0%
TCTCAAATCTCAATATCATG+GGG - chr7_3:8745901-8745920 None:intergenic 30.0%
CTCTCAAATCTCAATATCAT+GGG - chr7_3:8745902-8745921 None:intergenic 30.0%
ACTCTCAAATCTCAATATCA+TGG - chr7_3:8745903-8745922 None:intergenic 30.0%
TGATATTGAGATTTGAGAGT+AGG + chr7_3:8745903-8745922 Msa1092240:intron 30.0%
TACCAGTAAATTGTTAATGC+TGG + chr7_3:8746386-8746405 Msa1092240:three_prime_UTR 30.0%
! ATGGTAGATTTTTGTAGCAT+AGG + chr7_3:8746430-8746449 Msa1092240:three_prime_UTR 30.0%
CCAGTTTCATACATAATCAA+CGG - chr7_3:8746464-8746483 None:intergenic 30.0%
!!! TGAAGACCAAGTTTCTTTTT+TGG + chr7_3:8746658-8746677 Msa1092240:three_prime_UTR 30.0%
!!! GAAGACCAAGTTTCTTTTTT+GGG + chr7_3:8746659-8746678 Msa1092240:three_prime_UTR 30.0%
ACATTCCCAAAAAAGAAACT+TGG - chr7_3:8746667-8746686 None:intergenic 30.0%
TCTAAATTGCTTCATGCATT+GGG + chr7_3:8746686-8746705 Msa1092240:three_prime_UTR 30.0%
!! TTGATTTGGAGAATAGGGTT+GGG - chr7_3:8739440-8739459 None:intergenic 35.0%
!! TTTGATTTGGAGAATAGGGT+TGG - chr7_3:8739441-8739460 None:intergenic 35.0%
GGAAAAATGTTAGGTTTCTG+AGG - chr7_3:8739602-8739621 None:intergenic 35.0%
TGGAATTTCAGCTTCGTTAT+CGG - chr7_3:8739682-8739701 None:intergenic 35.0%
AAACCTTAACTACGATGACT+TGG + chr7_3:8739860-8739879 Msa1092240:CDS 35.0%
TATCCAAGTCATCGTAGTTA+AGG - chr7_3:8739866-8739885 None:intergenic 35.0%
AAATTGGAGTTGTTGAGCAT+TGG + chr7_3:8740139-8740158 Msa1092240:intron 35.0%
GGTACACAAATCTTCAATCA+CGG - chr7_3:8740403-8740422 None:intergenic 35.0%
ATTGAAGATTTGTGTACCGT+TGG + chr7_3:8740405-8740424 Msa1092240:intron 35.0%
AAAACAAATTCCGGATCCAA+CGG - chr7_3:8740424-8740443 None:intergenic 35.0%
TAGCTCTTGATTCTATTTGC+TGG + chr7_3:8740641-8740660 Msa1092240:intron 35.0%
CTAGATCCTTTCCATTGTTA+AGG + chr7_3:8740692-8740711 Msa1092240:intron 35.0%
!!! GTTCAACTAAGGCTTTGTTT+TGG + chr7_3:8741062-8741081 Msa1092240:intron 35.0%
!!! TAAGGCTTTGTTTTGGAGTT+TGG + chr7_3:8741069-8741088 Msa1092240:intron 35.0%
! GAACGAATACAGGGTTTTTA+GGG - chr7_3:8741241-8741260 None:intergenic 35.0%
TAATTGTCTATGGCAGAAAG+TGG + chr7_3:8741543-8741562 Msa1092240:intron 35.0%
! GACATCTGAACCCTTTTTAA+GGG - chr7_3:8741575-8741594 None:intergenic 35.0%
! AGACATCTGAACCCTTTTTA+AGG - chr7_3:8741576-8741595 None:intergenic 35.0%
TCCGGAATACCAATTAATTG+TGG + chr7_3:8741621-8741640 Msa1092240:CDS 35.0%
CATTGCACTCCACAATTAAT+TGG - chr7_3:8741633-8741652 None:intergenic 35.0%
!! TGACCCTTGTTGATTTAGAA+GGG + chr7_3:8741803-8741822 Msa1092240:CDS 35.0%
AAGCCCTTCTAAATCAACAA+GGG - chr7_3:8741809-8741828 None:intergenic 35.0%
AAAGCCCTTCTAAATCAACA+AGG - chr7_3:8741810-8741829 None:intergenic 35.0%
TTTACCCTCAGCTATTATCA+TGG + chr7_3:8741828-8741847 Msa1092240:CDS 35.0%
ACAACCATGATAATAGCTGA+GGG - chr7_3:8741835-8741854 None:intergenic 35.0%
AGTCCTTAGTAAGACAATTG+AGG + chr7_3:8741900-8741919 Msa1092240:CDS 35.0%
AAGCCTCAATTGTCTTACTA+AGG - chr7_3:8741906-8741925 None:intergenic 35.0%
CCAACTATAGCTGAAACATT+AGG - chr7_3:8742006-8742025 None:intergenic 35.0%
CCTAATGTTTCAGCTATAGT+TGG + chr7_3:8742003-8742022 Msa1092240:CDS 35.0%
ATGAAATTGTGATGTTGCAG+TGG - chr7_3:8742145-8742164 None:intergenic 35.0%
GCAACATCACAATTTCATGT+CGG + chr7_3:8742147-8742166 Msa1092240:CDS 35.0%
! TGGGGTAGTCTGAAATATTT+CGG - chr7_3:8742187-8742206 None:intergenic 35.0%
!! TTCTTTTTAGGCTCAGAATC+AGG - chr7_3:8742393-8742412 None:intergenic 35.0%
!!! AGTACTTTTTCTTAGGTTGC+GGG + chr7_3:8742466-8742485 Msa1092240:intron 35.0%
ACATGAGGAAGTTAGCTAAT+AGG + chr7_3:8742569-8742588 Msa1092240:CDS 35.0%
GATCAGGGAAAAGTGAAATT+AGG - chr7_3:8742638-8742657 None:intergenic 35.0%
!!! ATTTTGGGATTGGAAGTACA+AGG + chr7_3:8743070-8743089 Msa1092240:intron 35.0%
!!! TTTTGGGATTGGAAGTACAA+GGG + chr7_3:8743071-8743090 Msa1092240:intron 35.0%
GTATCAGAATATTCTACCCA+AGG - chr7_3:8743113-8743132 None:intergenic 35.0%
GAAGACAGAATGAAATCCTT+TGG + chr7_3:8743236-8743255 Msa1092240:intron 35.0%
GAGATGAAGTTCATTTCCAA+AGG - chr7_3:8743255-8743274 None:intergenic 35.0%
TATTTATGCAGCTAAAGAGC+AGG - chr7_3:8743715-8743734 None:intergenic 35.0%
ATTATAATACAACTGAGGCG+AGG + chr7_3:8743806-8743825 Msa1092240:intron 35.0%
! TGCCGTTGTGGTATTTATTT+TGG - chr7_3:8743855-8743874 None:intergenic 35.0%
TTACCACTGTGAATCTCTAT+AGG - chr7_3:8744205-8744224 None:intergenic 35.0%
!!! TATCATTTTTTGCATACCCC+CGG + chr7_3:8744310-8744329 Msa1092240:intron 35.0%
TTTACCTACTCTAAACTTCC+GGG - chr7_3:8744331-8744350 None:intergenic 35.0%
CTTTACCTACTCTAAACTTC+CGG - chr7_3:8744332-8744351 None:intergenic 35.0%
TTTGAAGGAGATATAAGGCT+TGG - chr7_3:8744514-8744533 None:intergenic 35.0%
TATGAAGGAAGCTTCTATGA+AGG + chr7_3:8744637-8744656 Msa1092240:intron 35.0%
!! CCTAGTTTTCAACTGTATCA+GGG - chr7_3:8744708-8744727 None:intergenic 35.0%
!! ACCTAGTTTTCAACTGTATC+AGG - chr7_3:8744709-8744728 None:intergenic 35.0%
ATCATATGAATTTGGCAGAG+GGG - chr7_3:8744822-8744841 None:intergenic 35.0%
AGGCAATAATTCAGATAGGT+AGG + chr7_3:8744901-8744920 Msa1092240:intron 35.0%
! GTAGTTTGTAAAACTTTCCC+TGG + chr7_3:8744923-8744942 Msa1092240:intron 35.0%
GTTTAATAAGTGAGAAGACC+AGG - chr7_3:8744944-8744963 None:intergenic 35.0%
!! CTTTTGGCTGTGATTTAGTT+AGG + chr7_3:8744970-8744989 Msa1092240:intron 35.0%
TGATTTAGTTAGGCCCTATT+TGG + chr7_3:8744980-8744999 Msa1092240:intron 35.0%
GAAGTGGAAACGAATATGAT+AGG + chr7_3:8745296-8745315 Msa1092240:intron 35.0%
TATTACAAACAACTGCTGGT+TGG - chr7_3:8745414-8745433 None:intergenic 35.0%
!! TAGTGTTATAAGCACTGAAC+TGG + chr7_3:8745466-8745485 Msa1092240:intron 35.0%
!! AGTGTTATAAGCACTGAACT+GGG + chr7_3:8745467-8745486 Msa1092240:intron 35.0%
CGTAACAAAATACCAAATGG+AGG - chr7_3:8745822-8745841 None:intergenic 35.0%
CTCAAATCTCAATATCATGG+GGG - chr7_3:8745900-8745919 None:intergenic 35.0%
ATTGAGATTTGAGAGTAGGT+TGG + chr7_3:8745907-8745926 Msa1092240:intron 35.0%
TCTTGTTCTGTCTACTGAAT+TGG + chr7_3:8746351-8746370 Msa1092240:three_prime_UTR 35.0%
CTCCAGCATTAACAATTTAC+TGG - chr7_3:8746391-8746410 None:intergenic 35.0%
CAGTAAATTGTTAATGCTGG+AGG + chr7_3:8746389-8746408 Msa1092240:three_prime_UTR 35.0%
! CCGTTGATTATGTATGAAAC+TGG + chr7_3:8746461-8746480 Msa1092240:three_prime_UTR 35.0%
! ATGAAACTGGTTTCATCTTC+AGG + chr7_3:8746474-8746493 Msa1092240:three_prime_UTR 35.0%
! TGAAACTGGTTTCATCTTCA+GGG + chr7_3:8746475-8746494 Msa1092240:three_prime_UTR 35.0%
! ATGACTTTTACAATGCCTTG+AGG + chr7_3:8746527-8746546 Msa1092240:three_prime_UTR 35.0%
CTGAATCTATCCCATGAAAA+TGG - chr7_3:8746593-8746612 None:intergenic 35.0%
GTCTAAATTGCTTCATGCAT+TGG + chr7_3:8746685-8746704 Msa1092240:three_prime_UTR 35.0%
CTAAATTGCTTCATGCATTG+GGG + chr7_3:8746687-8746706 Msa1092240:three_prime_UTR 35.0%
AAAAAATCTCAGTGAGTCTC+TGG + chr7_3:8746770-8746789 Msa1092240:three_prime_UTR 35.0%
TACCATGTTGTATGAGAGAG+GGG - chr7_3:8739531-8739550 None:intergenic 40.0%
GTACCATGTTGTATGAGAGA+GGG - chr7_3:8739532-8739551 None:intergenic 40.0%
AGTACCATGTTGTATGAGAG+AGG - chr7_3:8739533-8739552 None:intergenic 40.0%
GAGTAGCCTGCAACAAAAAT+TGG - chr7_3:8739623-8739642 None:intergenic 40.0%
GATATGGATGAAGATGTCGA+TGG + chr7_3:8739819-8739838 Msa1092240:CDS 40.0%
CACTTATGTGCTATGAAGCA+CGG + chr7_3:8740207-8740226 Msa1092240:intron 40.0%
GACACATAAGCTATGAAGCA+CGG - chr7_3:8740371-8740390 None:intergenic 40.0%
! TCACTTAAGTTGTGTCTGGT+TGG + chr7_3:8740590-8740609 Msa1092240:intron 40.0%
! CACTTAAGTTGTGTCTGGTT+GGG + chr7_3:8740591-8740610 Msa1092240:intron 40.0%
!! CAAAAGTACTGGCATACTGT+GGG - chr7_3:8740754-8740773 None:intergenic 40.0%
! CACAGTATGCCAGTACTTTT+GGG + chr7_3:8740753-8740772 Msa1092240:intron 40.0%
! TTCTCAACTCCCAAAAGTAC+TGG - chr7_3:8740765-8740784 None:intergenic 40.0%
ACTGACACGCATTCAATTAG+GGG - chr7_3:8740907-8740926 None:intergenic 40.0%
CACTGACACGCATTCAATTA+GGG - chr7_3:8740908-8740927 None:intergenic 40.0%
ACACTGACACGCATTCAATT+AGG - chr7_3:8740909-8740928 None:intergenic 40.0%
! TCGTGTTTGTGTCGATGTTT+CGG + chr7_3:8741040-8741059 Msa1092240:intron 40.0%
TCGATGTTTCGGTTCAACTA+AGG + chr7_3:8741051-8741070 Msa1092240:intron 40.0%
!!! TTGTTTTGGAGTTTGGAGAG+TGG + chr7_3:8741076-8741095 Msa1092240:intron 40.0%
! GGAACGAATACAGGGTTTTT+AGG - chr7_3:8741242-8741261 None:intergenic 40.0%
GATGAAGTGGAACGAATACA+GGG - chr7_3:8741250-8741269 None:intergenic 40.0%
AGTGGAAGAAGCCCTTAAAA+AGG + chr7_3:8741561-8741580 Msa1092240:CDS 40.0%
GTGGAAGAAGCCCTTAAAAA+GGG + chr7_3:8741562-8741581 Msa1092240:CDS 40.0%
ACAACACGCGCATAATCAAT+TGG - chr7_3:8741757-8741776 None:intergenic 40.0%
!! CTGACCCTTGTTGATTTAGA+AGG + chr7_3:8741802-8741821 Msa1092240:CDS 40.0%
GACAACCATGATAATAGCTG+AGG - chr7_3:8741836-8741855 None:intergenic 40.0%
GTCTTACTAAGGACTTCTTC+TGG - chr7_3:8741895-8741914 None:intergenic 40.0%
AGAAGCTGAACATTACAAGC+AGG - chr7_3:8742090-8742109 None:intergenic 40.0%
GCTTGTAATGTTCAGCTTCT+AGG + chr7_3:8742090-8742109 Msa1092240:CDS 40.0%
GCCAAGAAAAAAAATCTCGC+CGG + chr7_3:8742114-8742133 Msa1092240:CDS 40.0%
CCAAGAAAAAAAATCTCGCC+GGG + chr7_3:8742115-8742134 Msa1092240:CDS 40.0%
! ATCTTCCAGTTTTCCCAGAT+GGG - chr7_3:8742290-8742309 None:intergenic 40.0%
GAAAACTGGAAGATCTCTCA+GGG + chr7_3:8742296-8742315 Msa1092240:CDS 40.0%
TCTGAGCCTAAAAAGAAGAG+AGG + chr7_3:8742396-8742415 Msa1092240:CDS 40.0%
!!! GTACTTTTTCTTAGGTTGCG+GGG + chr7_3:8742467-8742486 Msa1092240:intron 40.0%
!! CTGTTGATTCTTATGCCATC+AGG + chr7_3:8742533-8742552 Msa1092240:intron 40.0%
TGCCATCAGGTATGCAATAA+CGG + chr7_3:8742546-8742565 Msa1092240:intron 40.0%
ATTCCTGAAGAGAGCTCTTT+AGG + chr7_3:8742604-8742623 Msa1092240:CDS 40.0%
TTACCTAAAGAGCTCTCTTC+AGG - chr7_3:8742610-8742629 None:intergenic 40.0%
TAGATAGAAGGGGAGAAAAG+AGG + chr7_3:8742752-8742771 Msa1092240:intron 40.0%
! ATGATAGCGAACTCCATGTT+AGG + chr7_3:8742811-8742830 Msa1092240:intron 40.0%
!!! TGTTGTTTTCGACATGTTGC+AGG - chr7_3:8743050-8743069 None:intergenic 40.0%
!! GGAGTCTTATTATGTTGGGT+GGG - chr7_3:8743200-8743219 None:intergenic 40.0%
!! AGGAGTCTTATTATGTTGGG+TGG - chr7_3:8743201-8743220 None:intergenic 40.0%
GAAAAGAGTTATGGTAGCAG+CGG + chr7_3:8743607-8743626 Msa1092240:CDS 40.0%
TGGAGTAAATGCAAGACTTG+AGG - chr7_3:8743650-8743669 None:intergenic 40.0%
TAAGTGAAACTAACCTGCAC+TGG - chr7_3:8743670-8743689 None:intergenic 40.0%
TTACTTCGCTACTGCTAATG+TGG + chr7_3:8743780-8743799 Msa1092240:intron 40.0%
ATGGTGATACTCTCCTCAAT+GGG - chr7_3:8743922-8743941 None:intergenic 40.0%
!!! AGGAGAGTATCACCATCTTT+TGG + chr7_3:8743926-8743945 Msa1092240:intron 40.0%
!!! GGAGAGTATCACCATCTTTT+GGG + chr7_3:8743927-8743946 Msa1092240:intron 40.0%
TCTCTATCTAGGAACGTCTT+TGG + chr7_3:8744048-8744067 Msa1092240:intron 40.0%
! AAATGGCTTCTGAAAGGACA+GGG - chr7_3:8744140-8744159 None:intergenic 40.0%
! AAAATGGCTTCTGAAAGGAC+AGG - chr7_3:8744141-8744160 None:intergenic 40.0%
GTGGTAAATTTCAGCTTGTC+TGG + chr7_3:8744218-8744237 Msa1092240:intron 40.0%
TTACCTACTCTAAACTTCCG+GGG - chr7_3:8744330-8744349 None:intergenic 40.0%
!! AAGGGTGTTTGCATAGAGAA+TGG - chr7_3:8744381-8744400 None:intergenic 40.0%
AAGGAGATATAAGGCTTGGA+TGG - chr7_3:8744510-8744529 None:intergenic 40.0%
CTGGAGATTCAAGTGTTTGA+AGG - chr7_3:8744529-8744548 None:intergenic 40.0%
GGTTGAATGTAGGAAATGAC+TGG - chr7_3:8744548-8744567 None:intergenic 40.0%
ACAACAAGGTGGTTGAATGT+AGG - chr7_3:8744558-8744577 None:intergenic 40.0%
ACAGTTGTTGCATTTACTCC+TGG - chr7_3:8744587-8744606 None:intergenic 40.0%
!! TATGGATTGGGCTTCTATGA+AGG + chr7_3:8744622-8744641 Msa1092240:intron 40.0%
! AGTTTTCAACTGTATCAGGG+TGG - chr7_3:8744705-8744724 None:intergenic 40.0%
CCCTGATACAGTTGAAAACT+AGG + chr7_3:8744705-8744724 Msa1092240:intron 40.0%
! AGAGACTGCTAGTTCTTCAA+GGG + chr7_3:8744769-8744788 Msa1092240:intron 40.0%
TCTCCCAAACTGTCTCATAA+GGG + chr7_3:8745139-8745158 Msa1092240:intron 40.0%
ATGCCCTTATGAGACAGTTT+GGG - chr7_3:8745145-8745164 None:intergenic 40.0%
TATGCCCTTATGAGACAGTT+TGG - chr7_3:8745146-8745165 None:intergenic 40.0%
AGGAAGAATAGACCGAACAA+TGG + chr7_3:8745346-8745365 Msa1092240:intron 40.0%
GGAAGAATAGACCGAACAAT+GGG + chr7_3:8745347-8745366 Msa1092240:intron 40.0%
GAAGAATAGACCGAACAATG+GGG + chr7_3:8745348-8745367 Msa1092240:intron 40.0%
TCTTGCATCGTGTTTGTCTT+CGG + chr7_3:8745705-8745724 Msa1092240:intron 40.0%
AAGAAGGAGATACGTGGTAT+TGG - chr7_3:8745795-8745814 None:intergenic 40.0%
ACAAAATACCAAATGGAGGG+TGG - chr7_3:8745818-8745837 None:intergenic 40.0%
ATCTCAATATCATGGGGGTA+GGG - chr7_3:8745895-8745914 None:intergenic 40.0%
AATCTCAATATCATGGGGGT+AGG - chr7_3:8745896-8745915 None:intergenic 40.0%
TTCCTTAAACGACCGAAGTT+TGG + chr7_3:8746026-8746045 Msa1092240:intron 40.0%
TCCTTAAACGACCGAAGTTT+GGG + chr7_3:8746027-8746046 Msa1092240:intron 40.0%
! TTTGAGTTCCACTACCAAGT+TGG - chr7_3:8746258-8746277 None:intergenic 40.0%
TCTGTCTACTGAATTGGTGA+TGG + chr7_3:8746357-8746376 Msa1092240:three_prime_UTR 40.0%
GACATCACTTGATAGGTCTA+TGG + chr7_3:8746411-8746430 Msa1092240:three_prime_UTR 40.0%
!!! TGCCATTTTGGTAAGCAGTA+TGG + chr7_3:8746799-8746818 Msa1092240:three_prime_UTR 40.0%
TGCCATACTGCTTACCAAAA+TGG - chr7_3:8746804-8746823 None:intergenic 40.0%
ACGCGAGCGAGAATTTGATT+TGG - chr7_3:8739454-8739473 None:intergenic 45.0%
ATGTTGTATGAGAGAGGGGT+TGG - chr7_3:8739527-8739546 None:intergenic 45.0%
AACCCCTCTCTCATACAACA+TGG + chr7_3:8739526-8739545 Msa1092240:exon 45.0%
! TGATAATGATGCCGATACCG+CGG + chr7_3:8739797-8739816 Msa1092240:CDS 45.0%
TTCATCCATATCCGCGGTAT+CGG - chr7_3:8739811-8739830 None:intergenic 45.0%
GACATCTTCATCCATATCCG+CGG - chr7_3:8739817-8739836 None:intergenic 45.0%
GAGATACGTCGATGTTATGC+AGG + chr7_3:8739911-8739930 Msa1092240:CDS 45.0%
! TATTAGTTGTGTCGGCGTGT+CGG - chr7_3:8740242-8740261 None:intergenic 45.0%
GATTTGTGTACCGTTGGATC+CGG + chr7_3:8740411-8740430 Msa1092240:intron 45.0%
TTGTGTGTCAATTCCCTGTC+AGG + chr7_3:8740533-8740552 Msa1092240:intron 45.0%
! TCTGGTTGGGAGAATGCTTT+TGG + chr7_3:8740604-8740623 Msa1092240:intron 45.0%
!! CCAAAAGTACTGGCATACTG+TGG - chr7_3:8740755-8740774 None:intergenic 45.0%
! CCACAGTATGCCAGTACTTT+TGG + chr7_3:8740752-8740771 Msa1092240:intron 45.0%
CTCCCCTCCATTGAATCAAA+CGG + chr7_3:8740881-8740900 Msa1092240:intron 45.0%
TTAGGGGCCGTTTGATTCAA+TGG - chr7_3:8740891-8740910 None:intergenic 45.0%
CGTCAGACACTGACATATGT+CGG - chr7_3:8740955-8740974 None:intergenic 45.0%
CGACATATGTCAGTGTCTGA+CGG + chr7_3:8740953-8740972 Msa1092240:intron 45.0%
GGATGAAGTGGAACGAATAC+AGG - chr7_3:8741251-8741270 None:intergenic 45.0%
! TGTGTTTGGGAGTTTAGGAC+GGG - chr7_3:8741302-8741321 None:intergenic 45.0%
GTGTGTTTGGGAGTTTAGGA+CGG - chr7_3:8741303-8741322 None:intergenic 45.0%
! AAGGGTGTGTTTGGGAGTTT+AGG - chr7_3:8741307-8741326 None:intergenic 45.0%
AAACTCCCAAACACACCCTT+AGG + chr7_3:8741307-8741326 Msa1092240:intron 45.0%
AACTCCCAAACACACCCTTA+GGG + chr7_3:8741308-8741327 Msa1092240:intron 45.0%
GGGTATGCTTGTGAATACGT+TGG + chr7_3:8741331-8741350 Msa1092240:intron 45.0%
GTTGGCATGAGTTATGACTG+AGG + chr7_3:8741349-8741368 Msa1092240:intron 45.0%
AAAGGGTTCAGATGTCTCTC+AGG + chr7_3:8741579-8741598 Msa1092240:CDS 45.0%
AAGGGTTCAGATGTCTCTCA+GGG + chr7_3:8741580-8741599 Msa1092240:CDS 45.0%
TGTGGAGTGCAATGCATTGT+CGG + chr7_3:8741639-8741658 Msa1092240:CDS 45.0%
TGTACTAGTGACTCAAGCTC+TGG - chr7_3:8741730-8741749 None:intergenic 45.0%
! GCGCGTGTTGTTAAGAAGAT+AGG + chr7_3:8741766-8741785 Msa1092240:CDS 45.0%
! CTAAGGACTTCTTCTGGAAG+TGG - chr7_3:8741889-8741908 None:intergenic 45.0%
GCATCTTTGCAAGAGCTGAT+AGG - chr7_3:8742068-8742087 None:intergenic 45.0%
!!! CCCGGCGAGATTTTTTTTCT+TGG - chr7_3:8742118-8742137 None:intergenic 45.0%
! GATCTTCCAGTTTTCCCAGA+TGG - chr7_3:8742291-8742310 None:intergenic 45.0%
GGAAAACTGGAAGATCTCTC+AGG + chr7_3:8742295-8742314 Msa1092240:CDS 45.0%
GAGCCTAAAAAGAAGAGAGG+TGG + chr7_3:8742399-8742418 Msa1092240:CDS 45.0%
! CGACCACCTCTCTTCTTTTT+AGG - chr7_3:8742405-8742424 None:intergenic 45.0%
TCGCAGACTTAGGAAGATGA+AGG + chr7_3:8742422-8742441 Msa1092240:CDS 45.0%
GACTTAGGAAGATGAAGGAG+AGG + chr7_3:8742427-8742446 Msa1092240:CDS 45.0%
! TTTCTTAGGTTGCGGGGTTA+AGG + chr7_3:8742473-8742492 Msa1092240:intron 45.0%
! TTCTTAGGTTGCGGGGTTAA+GGG + chr7_3:8742474-8742493 Msa1092240:intron 45.0%
GTCCGTTATTGCATACCTGA+TGG - chr7_3:8742551-8742570 None:intergenic 45.0%
!! GGTATGCAATAACGGACATG+AGG + chr7_3:8742554-8742573 Msa1092240:intron 45.0%
CATGTTAGGCAGGACTATGT+GGG + chr7_3:8742825-8742844 Msa1092240:intron 45.0%
TAAGTCACACTAGTGTGACC+AGG + chr7_3:8743159-8743178 Msa1092240:intron 45.0%
! GGGAGGTTTGGTTATAATCC+TGG - chr7_3:8743180-8743199 None:intergenic 45.0%
ATTATGTTGGGTGGGAGGTT+TGG - chr7_3:8743192-8743211 None:intergenic 45.0%
! GTCTTATTATGTTGGGTGGG+AGG - chr7_3:8743197-8743216 None:intergenic 45.0%
ATGTTCCGTGTTATAGGGGA+CGG + chr7_3:8743334-8743353 Msa1092240:intron 45.0%
TCTTGCATTTACTCCAGTGC+AGG + chr7_3:8743654-8743673 Msa1092240:CDS 45.0%
ATCAGTTATGCATGCCGTTG+TGG - chr7_3:8743867-8743886 None:intergenic 45.0%
GATGCTATGTCTGTGCCTTA+TGG + chr7_3:8743884-8743903 Msa1092240:intron 45.0%
TGGTGATACTCTCCTCAATG+GGG - chr7_3:8743921-8743940 None:intergenic 45.0%
GATGGTGATACTCTCCTCAA+TGG - chr7_3:8743923-8743942 None:intergenic 45.0%
TCATTGACCAACATCCAGAC+CGG + chr7_3:8744113-8744132 Msa1092240:intron 45.0%
TAGGTGGTCAGAAAACAGAC+AGG - chr7_3:8744186-8744205 None:intergenic 45.0%
CCACTGTGAATCTCTATAGG+TGG - chr7_3:8744202-8744221 None:intergenic 45.0%
CCACCTATAGAGATTCACAG+TGG + chr7_3:8744199-8744218 Msa1092240:intron 45.0%
AATTTCAGCTTGTCTGGTGC+TGG + chr7_3:8744224-8744243 Msa1092240:intron 45.0%
TACCTACTCTAAACTTCCGG+GGG - chr7_3:8744329-8744348 None:intergenic 45.0%
! CAGAGACTGCTAGTTCTTCA+AGG + chr7_3:8744768-8744787 Msa1092240:intron 45.0%
! GAGACTGCTAGTTCTTCAAG+GGG + chr7_3:8744770-8744789 Msa1092240:intron 45.0%
TATGAATTTGGCAGAGGGGT+GGG - chr7_3:8744818-8744837 None:intergenic 45.0%
ATATGAATTTGGCAGAGGGG+TGG - chr7_3:8744819-8744838 None:intergenic 45.0%
TCCATTTGCTCTCTCCATTG+AGG + chr7_3:8744881-8744900 Msa1092240:intron 45.0%
CTCTCCCAAACTGTCTCATA+AGG + chr7_3:8745138-8745157 Msa1092240:intron 45.0%
ACATTCACCTCCCCATTGTT+CGG - chr7_3:8745361-8745380 None:intergenic 45.0%
!! TATAAGCACTGAACTGGGAG+AGG + chr7_3:8745472-8745491 Msa1092240:intron 45.0%
GTGTGCACCGTAACTTGATA+AGG - chr7_3:8745626-8745645 None:intergenic 45.0%
TCATGGGGGTAGGGTATAAT+TGG - chr7_3:8745886-8745905 None:intergenic 45.0%
TCCCAAACTTCGGTCGTTTA+AGG - chr7_3:8746031-8746050 None:intergenic 45.0%
CGACCGAAGTTTGGGAAAAA+CGG + chr7_3:8746035-8746054 Msa1092240:intron 45.0%
GACCGAAGTTTGGGAAAAAC+GGG + chr7_3:8746036-8746055 Msa1092240:intron 45.0%
!! CTCCCGTTTTTCCCAAACTT+CGG - chr7_3:8746041-8746060 None:intergenic 45.0%
GATTGAGCTCTCAAATCCAC+AGG + chr7_3:8746222-8746241 Msa1092240:CDS 45.0%
!! AGCACCTACTTCTCTGAAAC+AGG + chr7_3:8746277-8746296 Msa1092240:CDS 45.0%
CGTTCCTGTTTCAGAGAAGT+AGG - chr7_3:8746284-8746303 None:intergenic 45.0%
CGTGCATGGTTCAATTCTTC+TGG - chr7_3:8746318-8746337 None:intergenic 45.0%
GACAGAACAAGAACTCCGAA+CGG - chr7_3:8746343-8746362 None:intergenic 45.0%
GGTTTCATCTTCAGGGATCT+TGG + chr7_3:8746482-8746501 Msa1092240:three_prime_UTR 45.0%
TCTTCATTGCCACGAAAGCT+TGG - chr7_3:8746644-8746663 None:intergenic 45.0%
!! CTCTGGAAAGCATGCCATTT+TGG + chr7_3:8746787-8746806 Msa1092240:three_prime_UTR 45.0%
!! AATAATTATTTATGTATTAA+CGG + chr7_3:8746929-8746948 Msa1092240:three_prime_UTR 5.0%
TGTGCTATGAAGCACGGACA+CGG + chr7_3:8740213-8740232 Msa1092240:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + chr7_3:8740293-8740312 Msa1092240:intron 50.0%
TATGAAGCACGGACACTCCT+TGG - chr7_3:8740360-8740379 None:intergenic 50.0%
TCAATTCCCTGTCAGGAGCT+AGG + chr7_3:8740540-8740559 Msa1092240:intron 50.0%
CAATTCCCTGTCAGGAGCTA+GGG + chr7_3:8740541-8740560 Msa1092240:intron 50.0%
TATGTCCCTAGCTCCTGACA+GGG - chr7_3:8740549-8740568 None:intergenic 50.0%
ATATGTCCCTAGCTCCTGAC+AGG - chr7_3:8740550-8740569 None:intergenic 50.0%
TGTCAGGAGCTAGGGACATA+TGG + chr7_3:8740549-8740568 Msa1092240:intron 50.0%
GGCCGTTTGATTCAATGGAG+GGG - chr7_3:8740886-8740905 None:intergenic 50.0%
GGGCCGTTTGATTCAATGGA+GGG - chr7_3:8740887-8740906 None:intergenic 50.0%
AGTTTGGAGAGTGGAGCAGA+GGG + chr7_3:8741085-8741104 Msa1092240:intron 50.0%
ACTCCCAAACACACCCTTAG+GGG + chr7_3:8741309-8741328 Msa1092240:intron 50.0%
TCACAAGCATACCCCCCTAA+GGG - chr7_3:8741325-8741344 None:intergenic 50.0%
TTCACAAGCATACCCCCCTA+AGG - chr7_3:8741326-8741345 None:intergenic 50.0%
!! TATAGTTGGGAGTGCTGTCG+CGG + chr7_3:8742017-8742036 Msa1092240:CDS 50.0%
TGATGTTGCAGTGGAGAACC+CGG - chr7_3:8742136-8742155 None:intergenic 50.0%
AGACTACCCCACCTTCTTTC+AGG + chr7_3:8742196-8742215 Msa1092240:CDS 50.0%
TCGCATCCTGAAAGAAGGTG+GGG - chr7_3:8742205-8742224 None:intergenic 50.0%
CTCGCATCCTGAAAGAAGGT+GGG - chr7_3:8742206-8742225 None:intergenic 50.0%
CATGCTCGCATCCTGAAAGA+AGG - chr7_3:8742210-8742229 None:intergenic 50.0%
TAGACTTTGCAGCCACGAGT+CGG - chr7_3:8742233-8742252 None:intergenic 50.0%
GCACGTGTAGACTCAATACG+TGG + chr7_3:8742261-8742280 Msa1092240:CDS 50.0%
!! TTTGGGTTGCTTAGCAGGAG+GGG - chr7_3:8742358-8742377 None:intergenic 50.0%
!! GTTTGGGTTGCTTAGCAGGA+GGG - chr7_3:8742359-8742378 None:intergenic 50.0%
!! AGTGGTTTGGGTTGCTTAGC+AGG - chr7_3:8742363-8742382 None:intergenic 50.0%
!! TCAGGCACTGGAAGTGGTTT+GGG - chr7_3:8742375-8742394 None:intergenic 50.0%
!! ATCAGGCACTGGAAGTGGTT+TGG - chr7_3:8742376-8742395 None:intergenic 50.0%
!! TCAGAATCAGGCACTGGAAG+TGG - chr7_3:8742381-8742400 None:intergenic 50.0%
TTAGGCTCAGAATCAGGCAC+TGG - chr7_3:8742387-8742406 None:intergenic 50.0%
TAGCGAACTCCATGTTAGGC+AGG + chr7_3:8742815-8742834 Msa1092240:intron 50.0%
CCACATAGTCCTGCCTAACA+TGG - chr7_3:8742827-8742846 None:intergenic 50.0%
CCATGTTAGGCAGGACTATG+TGG + chr7_3:8742824-8742843 Msa1092240:intron 50.0%
GGGTTATGGAATGCTTGGTC+AGG + chr7_3:8743366-8743385 Msa1092240:CDS 50.0%
TATGGAATGCTTGGTCAGGC+TGG + chr7_3:8743370-8743389 Msa1092240:CDS 50.0%
GCTATGTCTGTGCCTTATGG+TGG + chr7_3:8743887-8743906 Msa1092240:intron 50.0%
CAGAAAACAGACAGGTGGCA+CGG - chr7_3:8744178-8744197 None:intergenic 50.0%
GTGGTCAGAAAACAGACAGG+TGG - chr7_3:8744183-8744202 None:intergenic 50.0%
! TACCCCCGGAAGTTTAGAGT+AGG + chr7_3:8744324-8744343 Msa1092240:intron 50.0%
ACTCCTGGAGCTTGACAACA+AGG - chr7_3:8744572-8744591 None:intergenic 50.0%
GCCTCAATGGAGAGAGCAAA+TGG - chr7_3:8744885-8744904 None:intergenic 50.0%
GAATAGACCGAACAATGGGG+AGG + chr7_3:8745351-8745370 Msa1092240:intron 50.0%
ACTGAACTGGGAGAGGTTTC+AGG + chr7_3:8745479-8745498 Msa1092240:intron 50.0%
CTGAACTGGGAGAGGTTTCA+GGG + chr7_3:8745480-8745499 Msa1092240:intron 50.0%
TGAACTGGGAGAGGTTTCAG+GGG + chr7_3:8745481-8745500 Msa1092240:intron 50.0%
TCCTTCTTCCACCCTCCATT+TGG + chr7_3:8745807-8745826 Msa1092240:intron 50.0%
ACCAAATGGAGGGTGGAAGA+AGG - chr7_3:8745811-8745830 None:intergenic 50.0%
CGGTCGTTTAAGGAATGTGC+AGG - chr7_3:8746021-8746040 None:intergenic 50.0%
CATGCACACCAACTTGGTAG+TGG + chr7_3:8746247-8746266 Msa1092240:CDS 50.0%
TGAACCATGCACGAACCGTT+CGG + chr7_3:8746325-8746344 Msa1092240:exon 50.0%
GCTGGAGGACATCACTTGAT+AGG + chr7_3:8746404-8746423 Msa1092240:three_prime_UTR 50.0%
TGATGCAGACCAAGCTTTCG+TGG + chr7_3:8746632-8746651 Msa1092240:three_prime_UTR 50.0%
TGATGCCGATACCGCGGATA+TGG + chr7_3:8739803-8739822 Msa1092240:CDS 55.0%
ACACGACATGTGTCCGACAC+CGG + chr7_3:8740322-8740341 Msa1092240:intron 55.0%
! TCCTTGGATTAGGCGTGTCC+CGG - chr7_3:8740344-8740363 None:intergenic 55.0%
GCACGGACACTCCTTGGATT+AGG - chr7_3:8740354-8740373 None:intergenic 55.0%
GAGGGGAGCAGCTTAGTGTA+AGG - chr7_3:8740869-8740888 None:intergenic 55.0%
GGGGCCGTTTGATTCAATGG+AGG - chr7_3:8740888-8740907 None:intergenic 55.0%
GAGTTTGGAGAGTGGAGCAG+AGG + chr7_3:8741084-8741103 Msa1092240:intron 55.0%
! GGAGTTTAGGACGGGAAGAG+AGG - chr7_3:8741294-8741313 None:intergenic 55.0%
CTCCCAAACACACCCTTAGG+GGG + chr7_3:8741310-8741329 Msa1092240:intron 55.0%
TCCCAAACACACCCTTAGGG+GGG + chr7_3:8741311-8741330 Msa1092240:intron 55.0%
! ACCCCCCTAAGGGTGTGTTT+GGG - chr7_3:8741315-8741334 None:intergenic 55.0%
! TACCCCCCTAAGGGTGTGTT+TGG - chr7_3:8741316-8741335 None:intergenic 55.0%
!! GTTACAGCGTCGACTACGAC+TGG + chr7_3:8741859-8741878 Msa1092240:CDS 55.0%
TGCTGTCGCGGCTAAACTCA+TGG + chr7_3:8742029-8742048 Msa1092240:CDS 55.0%
GCTGTCGCGGCTAAACTCAT+GGG + chr7_3:8742030-8742049 Msa1092240:CDS 55.0%
CGCGGCTAAACTCATGGGAA+CGG + chr7_3:8742035-8742054 Msa1092240:CDS 55.0%
GCTAAACTCATGGGAACGGC+TGG + chr7_3:8742039-8742058 Msa1092240:CDS 55.0%
AAACTCATGGGAACGGCTGG+TGG + chr7_3:8742042-8742061 Msa1092240:CDS 55.0%
GCTCGCATCCTGAAAGAAGG+TGG - chr7_3:8742207-8742226 None:intergenic 55.0%
TCAATACGTGGCGACCCATC+TGG + chr7_3:8742273-8742292 Msa1092240:CDS 55.0%
CAATACGTGGCGACCCATCT+GGG + chr7_3:8742274-8742293 Msa1092240:CDS 55.0%
! TTGGGTTGCTTAGCAGGAGG+GGG - chr7_3:8742357-8742376 None:intergenic 55.0%
!! GGTTTGGGTTGCTTAGCAGG+AGG - chr7_3:8742360-8742379 None:intergenic 55.0%
AGAGAGGTGGTCGCAGACTT+AGG + chr7_3:8742412-8742431 Msa1092240:CDS 55.0%
CCAGACCGTCCCCTATAACA+CGG - chr7_3:8743342-8743361 None:intergenic 55.0%
CGTGTTATAGGGGACGGTCT+GGG + chr7_3:8743340-8743359 Msa1092240:intron 55.0%
GGCGAGGGTTATGGAATGCT+TGG + chr7_3:8743361-8743380 Msa1092240:CDS 55.0%
GGCAAGCTTCGTGTTTCAGC+AGG + chr7_3:8743397-8743416 Msa1092240:CDS 55.0%
! GCTTCTGAAAGGACAGGGTC+CGG - chr7_3:8744135-8744154 None:intergenic 55.0%
CCTGGAGCTTGACAACAAGG+TGG - chr7_3:8744569-8744588 None:intergenic 55.0%
! CCACCTTGTTGTCAAGCTCC+AGG + chr7_3:8744566-8744585 Msa1092240:intron 55.0%
CTGGATCACACTGACCCTGA+TGG + chr7_3:8745535-8745554 Msa1092240:intron 55.0%
GGGTGGAAGAAGGAGATACG+TGG - chr7_3:8745801-8745820 None:intergenic 55.0%
! AGTTGGTGTGCATGAGCCTG+TGG - chr7_3:8746241-8746260 None:intergenic 55.0%
CAGGCTCATGCACACCAACT+TGG + chr7_3:8746241-8746260 Msa1092240:CDS 55.0%
AACTCCGAACGGTTCGTGCA+TGG - chr7_3:8746332-8746351 None:intergenic 55.0%
CACGACATGTGTCCGACACC+GGG + chr7_3:8740323-8740342 Msa1092240:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - chr7_3:8740338-8740357 None:intergenic 60.0%
ACCGGGACACGCCTAATCCA+AGG + chr7_3:8740340-8740359 Msa1092240:intron 60.0%
GGCGACCCATCTGGGAAAAC+TGG + chr7_3:8742282-8742301 Msa1092240:CDS 60.0%
CCGTGTTATAGGGGACGGTC+TGG + chr7_3:8743339-8743358 Msa1092240:intron 60.0%
ATGCTTGGTCAGGCTGGCAG+TGG + chr7_3:8743376-8743395 Msa1092240:CDS 60.0%
GGGGCTAGACGTCCACCATA+AGG - chr7_3:8743902-8743921 None:intergenic 60.0%
GTGGACGTCTAGCCCCATTG+AGG + chr7_3:8743906-8743925 Msa1092240:intron 60.0%
ACAGGGTCCGGTCTGGATGT+TGG - chr7_3:8744123-8744142 None:intergenic 60.0%
TGAAAGGACAGGGTCCGGTC+TGG - chr7_3:8744130-8744149 None:intergenic 60.0%
!! GATGCGAGCATGCCGACTCG+TGG + chr7_3:8742218-8742237 Msa1092240:CDS 65.0%
TATAGGGGACGGTCTGGGCG+AGG + chr7_3:8743345-8743364 Msa1092240:intron 65.0%
ATAGGGGACGGTCTGGGCGA+GGG + chr7_3:8743346-8743365 Msa1092240:intron 65.0%
GACGGTCTGGGCGAGGGTTA+TGG + chr7_3:8743352-8743371 Msa1092240:CDS 65.0%
!! GGTAGCAGCGGTGCTACGTC+TGG + chr7_3:8743619-8743638 Msa1092240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 8739409 8746993 8739409 ID=Msa1092240;Name=Msa1092240
chr7_3 mRNA 8739409 8746993 8739409 ID=Msa1092240-mRNA-1;Parent=Msa1092240;Name=Msa1092240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=136|1|1|1|1|1|8|666|484
chr7_3 exon 8739409 8739547 8739409 ID=Msa1092240-mRNA-1:exon:2494;Parent=Msa1092240-mRNA-1
chr7_3 exon 8739636 8739701 8739636 ID=Msa1092240-mRNA-1:exon:2495;Parent=Msa1092240-mRNA-1
chr7_3 exon 8739795 8739932 8739795 ID=Msa1092240-mRNA-1:exon:2496;Parent=Msa1092240-mRNA-1
chr7_3 exon 8741559 8742448 8741559 ID=Msa1092240-mRNA-1:exon:2497;Parent=Msa1092240-mRNA-1
chr7_3 exon 8742555 8742625 8742555 ID=Msa1092240-mRNA-1:exon:2498;Parent=Msa1092240-mRNA-1
chr7_3 exon 8743350 8743452 8743350 ID=Msa1092240-mRNA-1:exon:2499;Parent=Msa1092240-mRNA-1
chr7_3 exon 8743600 8743675 8743600 ID=Msa1092240-mRNA-1:exon:2500;Parent=Msa1092240-mRNA-1
chr7_3 exon 8746220 8746993 8746220 ID=Msa1092240-mRNA-1:exon:2501;Parent=Msa1092240-mRNA-1
chr7_3 five_prime_UTR 8739409 8739544 8739409 ID=Msa1092240-mRNA-1:five_prime_utr;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8739545 8739547 8739545 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8739636 8739701 8739636 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8739795 8739932 8739795 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8741559 8742448 8741559 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8742555 8742625 8742555 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8743350 8743452 8743350 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8743600 8743675 8743600 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 CDS 8746220 8746327 8746220 ID=Msa1092240-mRNA-1:cds;Parent=Msa1092240-mRNA-1
chr7_3 three_prime_UTR 8746328 8746993 8746328 ID=Msa1092240-mRNA-1:three_prime_utr;Parent=Msa1092240-mRNA-1
Gene Sequence

>Msa1092240

ATGGCTACTCTCGCTGATACTTTTCTTGCTGATCTTGATGAACTCTCCGATAACGAAGCTGAAATTCCAGCTGATAATGATGCCGATACCGCGGATATGGATGAAGATGTCGATGGTGATCTTGCTGACTTAGAAAACCTTAACTACGATGACTTGGATAGTGTTTCTAAGTTGCAACAAACTCAGAGATACGTCGATGTTATGCAGAAAGTGGAAGAAGCCCTTAAAAAGGGTTCAGATGTCTCTCAGGGATTAGATTTAGAAGATGATCCGGAATACCAATTAATTGTGGAGTGCAATGCATTGTCGGTTGACATCGAGAATGAAATCGTCATTATTCATAATTTTATTCGCGACAAGTATCGGTTGAAATTTCCAGAGCTTGAGTCACTAGTACATCATCCAATTGATTATGCGCGTGTTGTTAAGAAGATAGGAAATGAAATGGATCTGACCCTTGTTGATTTAGAAGGGCTTTTACCCTCAGCTATTATCATGGTTGTCTCAGTTACAGCGTCGACTACGACTGGCAAGCCACTTCCAGAAGAAGTCCTTAGTAAGACAATTGAGGCTTGTGATCGAGCACTTGCTCTTGATTCAGCGAAGAAGAAAGTTCTTGATTTTGTAGAAAGTAGAATGGGTTACATTGCGCCTAATGTTTCAGCTATAGTTGGGAGTGCTGTCGCGGCTAAACTCATGGGAACGGCTGGTGGCCTATCAGCTCTTGCAAAGATGCCTGCTTGTAATGTTCAGCTTCTAGGAGCCAAGAAAAAAAATCTCGCCGGGTTCTCCACTGCAACATCACAATTTCATGTCGGTTACATCGAGCAAACCGAAATATTTCAGACTACCCCACCTTCTTTCAGGATGCGAGCATGCCGACTCGTGGCTGCAAAGTCTACACTTGCAGCACGTGTAGACTCAATACGTGGCGACCCATCTGGGAAAACTGGAAGATCTCTCAGGGACGAGATCCATAAAAAAATTGAGAAGTGGCAAGAACCCCCTCCTGCTAAGCAACCCAAACCACTTCCAGTGCCTGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGCAGACTTAGGAAGATGAAGGAGAGGTATGCAATAACGGACATGAGGAAGTTAGCTAATAGGATGCAATTTGGAATTCCTGAAGAGAGCTCTTTAGGGGACGGTCTGGGCGAGGGTTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAGCTTCGTGTTTCAGCAGGTCAAAGCAAACTTGCTGCAAAAGTTGCTAAGAAATTCAAGGAAAAGAGTTATGGTAGCAGCGGTGCTACGTCTGGTTTAACCTCAAGTCTTGCATTTACTCCAGTGCAGGGGATTGAGCTCTCAAATCCACAGGCTCATGCACACCAACTTGGTAGTGGAACTCAAAGCACCTACTTCTCTGAAACAGGAACGTTTTCAAAGATCCAGAAGAATTGA
Protein sequence

>Msa1092240

MATLADTFLADLDELSDNEAEIPADNDADTADMDEDVDGDLADLENLNYDDLDSVSKLQQTQRYVDVMQKVEEALKKGSDVSQGLDLEDDPEYQLIVECNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTIEACDRALALDSAKKKVLDFVESRMGYIAPNVSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFHVGYIEQTEIFQTTPPSFRMRACRLVAAKSTLAARVDSIRGDPSGKTGRSLRDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSAGQSKLAAKVAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETGTFSKIQKN*