AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074750 MtrunA17_Chr1g0182711 100.000 446 0 0 1 446 1 446 0.0 899
Msa0074750 MtrunA17_Chr7g0262801 96.644 447 12 2 1 446 1 445 0.0 862
Msa0074750 MtrunA17_Chr4g0050561 52.000 325 155 1 115 438 83 407 4.26e-114 341
Msa0074750 MtrunA17_Chr1g0192151 44.670 394 186 3 65 437 34 416 3.70e-113 339
Msa0074750 MtrunA17_Chr4g0014731 45.000 380 188 1 79 437 38 417 1.39e-112 337
Msa0074750 MtrunA17_Chr3g0108321 52.769 307 140 3 68 372 40 343 1.85e-112 335
Msa0074750 MtrunA17_Chr3g0145011 46.361 371 192 2 74 437 18 388 1.38e-107 324
Msa0074750 MtrunA17_Chr3g0141901 45.251 358 196 0 80 437 28 385 5.75e-106 320
Msa0074750 MtrunA17_Chr8g0345461 46.334 341 175 3 112 446 85 423 7.80e-105 318
Msa0074750 MtrunA17_Chr1g0200081 49.201 313 154 3 136 446 123 432 1.74e-101 309
Msa0074750 MtrunA17_Chr7g0217421 44.490 245 135 1 189 433 40 283 2.06e-61 204
Msa0074750 MtrunA17_Chr7g0264521 47.137 227 117 1 190 416 208 431 5.12e-61 212
Msa0074750 MtrunA17_Chr7g0264521 41.026 234 138 0 182 415 473 706 1.31e-53 191
Msa0074750 MtrunA17_Chr1g0180791 46.696 227 118 1 190 416 207 430 3.26e-60 210
Msa0074750 MtrunA17_Chr1g0180791 41.453 234 137 0 182 415 472 705 1.80e-54 194
Msa0074750 MtrunA17_Chr4g0052411 40.816 245 144 1 189 433 230 473 1.10e-56 199
Msa0074750 MtrunA17_Chr2g0327121 45.815 227 120 2 190 416 209 432 2.72e-56 199
Msa0074750 MtrunA17_Chr2g0327121 41.453 234 137 0 182 415 474 707 2.40e-53 191
Msa0074750 MtrunA17_Chr2g0297281 41.224 245 143 1 189 433 287 530 2.22e-55 196
Msa0074750 MtrunA17_Chr7g0248361 37.377 305 177 5 142 433 136 439 2.64e-55 194
Msa0074750 MtrunA17_Chr4g0031821 43.320 247 136 3 190 433 322 567 5.55e-55 195
Msa0074750 MtrunA17_Chr7g0255651 38.683 243 149 0 173 415 267 509 3.25e-54 190
Msa0074750 MtrunA17_Chr7g0255651 26.496 234 158 4 211 432 36 267 6.36e-19 89.4
Msa0074750 MtrunA17_Chr7g0260601 42.972 249 134 4 190 433 242 487 4.15e-53 189
Msa0074750 MtrunA17_Chr3g0094871 41.870 246 140 2 190 433 13 257 7.76e-53 183
Msa0074750 MtrunA17_Chr6g0476861 39.576 283 165 4 156 433 163 444 1.12e-52 187
Msa0074750 MtrunA17_Chr3g0143721 40.000 245 146 1 189 433 250 493 1.94e-52 187
Msa0074750 MtrunA17_Chr8g0388371 39.442 251 143 2 190 432 406 655 2.39e-52 189
Msa0074750 MtrunA17_Chr5g0429571 42.126 254 139 4 183 431 308 558 2.52e-51 185
Msa0074750 MtrunA17_Chr3g0104211 41.667 252 143 3 183 431 299 549 3.18e-50 182
Msa0074750 MtrunA17_Chr7g0255691 37.786 262 161 1 173 432 271 532 3.47e-49 176
Msa0074750 MtrunA17_Chr7g0255691 29.545 220 149 3 193 408 22 239 2.07e-24 105
Msa0074750 MtrunA17_Chr8g0362771 39.754 244 144 2 190 433 239 479 5.92e-49 177
Msa0074750 MtrunA17_Chr3g0135721 37.943 282 164 3 153 434 196 466 1.20e-48 177
Msa0074750 MtrunA17_Chr2g0331161 39.683 252 148 2 190 438 417 667 3.58e-48 177
Msa0074750 MtrunA17_Chr7g0255641 40.161 249 146 2 186 432 656 903 2.19e-47 174
Msa0074750 MtrunA17_Chr7g0255641 34.579 214 124 5 227 429 432 640 9.79e-29 119
Msa0074750 MtrunA17_Chr2g0316851 38.298 235 134 4 187 414 593 823 6.48e-47 174
Msa0074750 MtrunA17_Chr6g0456351 40.486 247 141 3 190 434 319 561 3.54e-46 168
Msa0074750 MtrunA17_Chr7g0255721 41.036 251 145 2 184 432 681 930 3.96e-46 171
Msa0074750 MtrunA17_Chr7g0255721 32.636 239 152 4 187 421 385 618 1.83e-30 125
Msa0074750 MtrunA17_Chr4g0033451 39.754 244 138 3 189 426 381 621 4.30e-46 171
Msa0074750 MtrunA17_Chr1g0158881 37.600 250 147 3 187 434 328 570 8.99e-46 169
Msa0074750 MtrunA17_Chr3g0135761 36.140 285 171 3 150 434 191 464 4.50e-45 166
Msa0074750 MtrunA17_Chr5g0432631 39.184 245 145 2 190 434 231 471 1.27e-43 163
Msa0074750 MtrunA17_Chr7g0255901 39.062 256 143 8 178 424 629 880 1.43e-43 163
Msa0074750 MtrunA17_Chr4g0004121 36.538 260 151 5 182 432 236 490 2.67e-42 156
Msa0074750 MtrunA17_Chr2g0277831 38.938 226 136 2 190 414 245 469 7.29e-42 158
Msa0074750 MtrunA17_Chr2g0277831 38.627 233 138 3 186 416 531 760 3.76e-40 153
Msa0074750 MtrunA17_Chr5g0397121 36.327 245 148 4 189 430 514 753 1.46e-41 157
Msa0074750 MtrunA17_Chr1g0195731 38.528 231 133 5 189 415 935 1160 7.42e-41 155
Msa0074750 MtrunA17_Chr1g0204031 38.261 230 134 5 189 415 558 782 2.42e-40 154
Msa0074750 MtrunA17_Chr7g0246111 36.214 243 146 5 176 415 200 436 5.57e-40 150
Msa0074750 MtrunA17_Chr4g0038101 37.391 230 135 5 190 415 723 947 5.94e-40 153
Msa0074750 MtrunA17_Chr8g0387641 35.217 230 141 4 189 415 522 746 1.55e-39 151
Msa0074750 MtrunA17_Chr4g0026631 35.055 271 146 10 182 446 121 367 1.72e-39 147
Msa0074750 MtrunA17_Chr1g0202371 37.391 230 135 5 189 415 398 621 1.80e-39 150
Msa0074750 MtrunA17_Chr3g0129971 38.723 235 133 5 189 415 297 528 1.91e-39 151
Msa0074750 MtrunA17_Chr1g0195741 37.229 231 136 5 189 415 939 1164 2.74e-39 151
Msa0074750 MtrunA17_Chr2g0321241 33.955 268 153 9 182 446 126 372 6.06e-39 145
Msa0074750 MtrunA17_Chr4g0052271 36.596 235 142 5 182 414 113 342 1.74e-38 144
Msa0074750 MtrunA17_Chr3g0116131 36.889 225 133 5 189 409 903 1122 3.42e-38 148
Msa0074750 MtrunA17_Chr1g0202381 36.522 230 138 5 189 415 469 693 2.51e-37 145
Msa0074750 MtrunA17_Chr6g0462581 36.522 230 137 5 189 415 501 724 2.62e-37 145
Msa0074750 MtrunA17_Chr2g0327231 41.566 166 97 0 183 348 341 506 9.98e-37 140
Msa0074750 MtrunA17_Chr2g0327231 47.727 88 42 1 190 277 155 238 5.96e-19 89.4
Msa0074750 MtrunA17_Chr4g0043381 34.513 226 145 1 190 415 839 1061 1.21e-36 143
Msa0074750 MtrunA17_Chr3g0127401 36.522 230 136 5 190 415 83 306 2.69e-36 137
Msa0074750 MtrunA17_Chr6g0459561 37.398 246 140 8 177 416 371 608 9.19e-36 140
Msa0074750 MtrunA17_Chr3g0086401 38.306 248 126 5 190 415 387 629 1.32e-34 136
Msa0074750 MtrunA17_Chr3g0086401 34.468 235 135 7 200 424 106 331 4.47e-29 120
Msa0074750 MtrunA17_Chr4g0047411 33.922 283 158 7 178 433 166 446 1.71e-34 136
Msa0074750 MtrunA17_Chr3g0086411 35.102 245 138 3 190 416 217 458 1.98e-34 134
Msa0074750 MtrunA17_Chr3g0086411 34.706 170 102 3 276 436 7 176 4.02e-18 86.7
Msa0074750 MtrunA17_Chr5g0432641 34.191 272 171 4 167 434 166 433 5.31e-34 134
Msa0074750 MtrunA17_Chr3g0127431 36.364 231 135 6 190 415 86 309 1.24e-33 130
Msa0074750 MtrunA17_Chr1g0168321 31.597 288 140 6 156 433 134 374 1.67e-33 132
Msa0074750 MtrunA17_Chr8g0357301 32.245 245 152 3 196 431 477 716 3.77e-32 130
Msa0074750 MtrunA17_Chr4g0062081 70.886 79 22 1 191 268 10 88 1.26e-31 116
Msa0074750 MtrunA17_Chr3g0135781 41.615 161 90 2 190 350 57 213 2.25e-31 119
Msa0074750 MtrunA17_Chr6g0459541 33.588 262 137 10 184 415 38 292 4.55e-31 122
Msa0074750 MtrunA17_Chr2g0289231 35.931 231 127 7 189 408 298 518 1.08e-30 124
Msa0074750 MtrunA17_Chr6g0459551 34.632 231 130 7 177 401 91 306 2.26e-26 110
Msa0074750 MtrunA17_Chr5g0432391 37.278 169 97 2 266 431 81 243 4.53e-24 103
Msa0074750 MtrunA17_Chr1g0190401 31.527 203 134 3 173 371 659 860 8.67e-23 102
Msa0074750 MtrunA17_Chr6g0459531 27.362 307 156 13 133 415 2 265 7.62e-17 81.3
Msa0074750 MtrunA17_Chr8g0372701 34.682 173 99 6 192 358 225 389 5.27e-14 73.9
Msa0074750 MtrunA17_Chr5g0404651 34.161 161 93 5 203 358 229 381 1.15e-13 72.8
Msa0074750 MtrunA17_Chr5g0404291 34.965 143 79 5 224 362 387 519 1.58e-13 72.8
Msa0074750 MtrunA17_Chr2g0315971 30.435 184 111 7 195 370 477 651 3.98e-12 68.6
Msa0074750 MtrunA17_Chr2g0292561 32.335 167 84 7 215 360 226 384 9.48e-12 66.6
Msa0074750 MtrunA17_Chr6g0466811 33.333 156 84 6 215 358 236 383 1.23e-11 66.6
Msa0074750 MtrunA17_Chr6g0452361 31.169 154 91 5 212 358 18 163 2.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074750 AT4G29040.1 94.843 446 20 1 1 446 1 443 0.0 853
Msa0074750 AT2G20140.1 94.395 446 22 1 1 446 1 443 0.0 847
Msa0074750 AT5G58290.1 51.934 362 170 2 67 427 33 391 1.64e-133 390
Msa0074750 AT5G20000.1 51.692 325 156 1 115 438 85 409 4.48e-112 336
Msa0074750 AT5G19990.2 51.385 325 157 1 115 438 27 351 6.22e-112 334
Msa0074750 AT5G19990.1 51.385 325 157 1 115 438 85 409 6.76e-112 336
Msa0074750 AT5G19990.3 51.385 325 157 1 115 438 85 409 6.76e-112 336
Msa0074750 AT1G09100.1 45.789 380 185 2 79 437 37 416 2.39e-111 335
Msa0074750 AT3G05530.1 46.281 363 174 1 96 437 55 417 2.61e-111 335
Msa0074750 AT1G45000.1 46.631 371 191 3 74 437 15 385 2.93e-106 321
Msa0074750 AT5G43010.1 48.256 344 174 2 98 437 42 385 1.89e-105 318
Msa0074750 AT1G53750.1 46.334 341 175 3 112 446 85 423 3.24e-104 317
Msa0074750 AT1G53780.1 46.199 342 174 4 112 446 257 595 4.40e-98 306
Msa0074750 AT1G53780.4 46.199 342 174 4 112 446 257 595 4.40e-98 306
Msa0074750 AT1G53780.3 46.199 342 174 4 112 446 256 594 5.09e-98 306
Msa0074750 AT1G53780.2 46.199 342 174 4 112 446 278 616 7.98e-98 306
Msa0074750 AT1G45000.2 45.247 263 137 3 74 329 15 277 1.83e-67 219
Msa0074750 AT3G53230.1 47.137 227 117 1 190 416 207 430 1.73e-60 211
Msa0074750 AT3G53230.1 40.323 248 148 0 182 429 472 719 1.72e-54 194
Msa0074750 AT3G09840.1 47.137 227 117 2 190 416 206 429 9.75e-60 209
Msa0074750 AT3G09840.1 41.702 235 136 1 182 415 471 705 1.58e-51 186
Msa0074750 AT5G03340.1 47.137 227 117 2 190 416 206 429 1.02e-59 209
Msa0074750 AT5G03340.1 41.453 234 137 0 182 415 471 704 2.90e-53 191
Msa0074750 AT2G30950.4 41.633 245 142 1 189 433 229 472 2.46e-57 201
Msa0074750 AT2G30950.1 41.633 245 142 1 189 433 225 468 2.83e-57 201
Msa0074750 AT2G30950.2 41.633 245 142 1 189 433 225 468 2.83e-57 201
Msa0074750 AT2G30950.3 41.633 245 142 1 189 433 225 468 2.83e-57 201
Msa0074750 AT5G15250.1 43.673 245 137 1 189 433 222 465 1.64e-55 196
Msa0074750 AT1G06430.1 40.408 245 145 1 189 433 218 461 1.80e-55 196
Msa0074750 AT1G06430.3 40.408 245 145 1 189 433 218 461 1.80e-55 196
Msa0074750 AT1G06430.2 40.408 245 145 1 189 433 218 461 1.80e-55 196
Msa0074750 AT1G07510.1 43.725 247 135 3 190 433 326 571 3.75e-55 196
Msa0074750 AT3G47060.1 43.952 248 131 4 189 431 323 567 7.72e-54 192
Msa0074750 AT5G58870.1 43.952 248 131 4 189 431 327 571 9.73e-54 192
Msa0074750 AT1G50250.1 40.000 245 146 1 189 433 260 503 1.38e-52 188
Msa0074750 AT5G15250.2 39.925 268 137 2 189 433 222 488 4.07e-52 183
Msa0074750 AT2G29080.1 43.496 246 136 2 190 433 321 565 9.65e-52 187
Msa0074750 AT4G23940.1 39.044 251 144 2 190 432 429 678 7.23e-51 185
Msa0074750 AT5G42270.1 38.776 245 149 1 189 433 248 491 1.06e-50 182
Msa0074750 AT3G15120.2 39.485 233 132 3 187 413 725 954 4.91e-49 180
Msa0074750 AT3G15120.1 39.485 233 132 3 187 413 715 944 5.24e-49 180
Msa0074750 AT2G03670.1 38.400 250 151 2 186 432 281 530 1.62e-48 175
Msa0074750 AT2G03670.1 32.661 248 160 3 191 432 22 268 1.33e-35 139
Msa0074750 AT1G05910.1 40.323 248 139 3 189 430 379 623 1.89e-48 178
Msa0074750 AT2G26140.1 40.408 245 142 2 190 434 226 466 6.44e-48 175
Msa0074750 AT3G56690.1 40.000 230 137 1 186 415 719 947 2.53e-47 175
Msa0074750 AT3G56690.1 42.347 196 109 2 220 414 413 605 1.13e-42 161
Msa0074750 AT3G16290.1 39.749 239 143 1 190 428 409 646 4.57e-47 174
Msa0074750 AT5G53170.1 37.200 250 148 3 187 434 358 600 1.48e-45 169
Msa0074750 AT3G02450.1 39.850 266 152 4 183 444 326 587 1.59e-44 164
Msa0074750 AT2G45500.4 35.341 249 150 6 171 415 63 304 1.82e-43 156
Msa0074750 AT2G45500.3 35.341 249 150 6 171 415 63 304 1.82e-43 156
Msa0074750 AT2G45500.2 34.783 253 154 6 167 415 192 437 2.54e-42 156
Msa0074750 AT2G45500.1 35.341 249 150 6 171 415 200 441 2.90e-42 156
Msa0074750 AT1G03000.1 37.743 257 153 6 178 430 645 898 3.55e-42 160
Msa0074750 AT2G45500.5 34.783 253 154 6 167 415 202 447 4.50e-42 155
Msa0074750 AT1G80350.1 35.769 260 153 5 182 432 230 484 2.03e-41 154
Msa0074750 AT1G02890.1 38.095 231 134 5 189 415 942 1167 4.71e-41 157
Msa0074750 AT4G02480.1 38.095 231 134 5 189 415 961 1186 7.10e-41 156
Msa0074750 AT4G28000.3 37.826 230 134 6 189 415 518 741 1.51e-40 155
Msa0074750 AT4G28000.2 37.826 230 134 6 189 415 518 741 1.63e-40 155
Msa0074750 AT4G28000.1 37.826 230 134 6 189 415 516 739 1.68e-40 154
Msa0074750 AT5G53540.1 37.826 230 133 5 190 415 86 309 2.99e-40 149
Msa0074750 AT5G08470.1 36.726 226 140 1 190 415 843 1065 9.17e-40 153
Msa0074750 AT5G08470.3 36.726 226 140 1 190 415 834 1056 9.75e-40 153
Msa0074750 AT2G34560.1 36.283 226 140 3 190 414 102 324 4.85e-39 145
Msa0074750 AT2G34560.2 36.283 226 140 3 190 414 111 333 5.55e-39 145
Msa0074750 AT1G64110.5 35.652 230 140 5 189 415 517 741 1.41e-38 149
Msa0074750 AT1G64110.3 35.652 230 140 5 189 415 517 741 1.41e-38 149
Msa0074750 AT1G64110.2 35.652 230 140 5 189 415 519 743 1.49e-38 149
Msa0074750 AT1G64110.4 35.652 230 140 5 189 415 519 743 1.49e-38 149
Msa0074750 AT1G64110.1 35.652 230 140 5 189 415 514 738 1.76e-38 149
Msa0074750 AT5G52882.1 36.957 230 136 6 189 415 515 738 3.22e-38 148
Msa0074750 AT5G64580.1 37.447 235 136 6 189 415 314 545 6.64e-38 147
Msa0074750 AT3G01610.1 34.959 246 145 3 180 414 222 463 8.52e-38 147
Msa0074750 AT3G01610.1 36.123 227 140 3 190 415 527 749 1.78e-33 134
Msa0074750 AT3G01610.2 34.959 246 145 3 180 414 222 463 8.53e-38 147
Msa0074750 AT3G01610.2 36.123 227 140 3 190 415 527 749 1.74e-33 134
Msa0074750 AT4G27680.1 37.229 231 133 6 190 415 83 306 1.11e-37 142
Msa0074750 AT1G50140.3 37.500 232 132 6 190 415 713 937 1.63e-37 146
Msa0074750 AT1G50140.1 37.500 232 132 6 190 415 713 937 1.63e-37 146
Msa0074750 AT1G50140.4 37.500 232 132 6 190 415 713 937 1.63e-37 146
Msa0074750 AT1G50140.2 37.500 232 132 6 190 415 691 915 1.65e-37 146
Msa0074750 AT1G50140.5 37.500 232 132 6 190 415 691 915 1.65e-37 146
Msa0074750 AT2G03670.2 32.661 248 160 3 191 432 22 268 1.07e-36 140
Msa0074750 AT2G03670.2 38.028 142 87 1 186 326 281 422 3.52e-22 99.0
Msa0074750 AT2G27600.1 34.686 271 147 11 182 446 123 369 1.16e-36 140
Msa0074750 AT3G19740.1 36.087 230 138 5 190 415 703 927 6.58e-36 141
Msa0074750 AT4G24860.4 35.065 231 141 5 189 415 791 1016 8.65e-36 141
Msa0074750 AT4G24860.1 35.065 231 141 5 189 415 818 1043 8.92e-36 141
Msa0074750 AT4G24860.3 35.065 231 141 5 189 415 816 1041 9.08e-36 141
Msa0074750 AT4G24860.2 35.065 231 141 5 189 415 814 1039 1.19e-35 140
Msa0074750 AT3G27120.1 36.327 245 142 8 177 415 389 625 2.46e-35 139
Msa0074750 AT1G79560.2 32.653 245 151 3 196 431 497 736 2.44e-32 130
Msa0074750 AT1G79560.3 32.653 245 151 3 196 431 497 736 2.56e-32 130
Msa0074750 AT1G79560.1 32.653 245 151 3 196 431 497 736 2.85e-32 130
Msa0074750 AT4G04910.1 33.453 278 156 8 178 428 203 478 5.54e-32 129
Msa0074750 AT4G04180.1 35.808 229 130 6 189 408 317 537 9.00e-32 128
Msa0074750 AT4G04180.2 35.808 229 130 6 189 408 312 532 9.43e-32 128
Msa0074750 AT1G62130.2 32.143 224 133 6 189 409 744 951 5.73e-28 117
Msa0074750 AT1G62130.1 32.143 224 133 6 189 409 751 958 5.96e-28 117
Msa0074750 AT1G02890.2 33.766 231 116 6 189 415 942 1139 2.64e-26 112
Msa0074750 AT3G04340.1 33.511 188 120 3 186 372 782 965 5.02e-23 103
Msa0074750 AT5G08470.2 35.135 148 93 1 190 337 843 987 6.49e-20 93.2
Msa0074750 AT2G18193.1 34.568 162 93 6 201 357 219 372 1.07e-12 70.1
Msa0074750 AT2G18330.1 31.844 179 104 7 186 362 354 516 9.56e-12 67.4
Msa0074750 AT4G36580.1 30.481 187 100 7 184 362 349 513 1.06e-11 67.4

Find 137 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGCTGCCGTCTTGTTTC+CGG 0.187678 1_2:-49653123 None:intergenic
AGCAAGGTCTTTCCTGTTCC+AGG 0.251915 1_2:-49655118 None:intergenic
AAAAGTTCCCTCACAAGTTT+TGG 0.253191 1_2:-49655862 None:intergenic
TAGAGAGACCTCAATCAAAA+TGG 0.277129 1_2:-49657753 None:intergenic
CTTTCAAATTTCACCGACTT+TGG 0.284176 1_2:+49657715 Msa0074750:three_prime_UTR
TGGTTTAGATGCGCAGATTC+AGG 0.304376 1_2:+49655000 Msa0074750:CDS
TGACCCATCGTCGATCGATT+TGG 0.312875 1_2:-49653058 None:intergenic
GGTGAAGGATTATTTGTTGA+TGG 0.316417 1_2:+49653291 Msa0074750:CDS
AGGAGATGTAAAAGTGATTC+TGG 0.336312 1_2:+49656171 Msa0074750:CDS
AAGCTGGCTTACTTGCTCTA+AGG 0.338560 1_2:+49656528 Msa0074750:CDS
GCCGATGAGTGTTGGGAATC+TGG 0.341792 1_2:+49653405 Msa0074750:CDS
GCCGTCTTGTTTCCGGTCAC+CGG 0.353994 1_2:-49653116 None:intergenic
ATTTCATCCACAACTGCATA+TGG 0.355370 1_2:-49657653 None:intergenic
CTTCACATATATAGTCCTTC+TGG 0.358495 1_2:-49657525 None:intergenic
CCTGAACTATATGAAGATAT+TGG 0.363458 1_2:+49655058 Msa0074750:CDS
GAAAGTCGAGAAGGCTCCTT+TGG 0.379073 1_2:+49654958 Msa0074750:CDS
ATACTCCGGCCCAACCGAAC+TGG 0.390222 1_2:-49653461 None:intergenic
TATCAGGTTCTATCGGTTGT+TGG 0.393295 1_2:+49654896 Msa0074750:intron
TTGAATCAAAACCATCTAAC+TGG 0.394542 1_2:-49656147 None:intergenic
ATTCTCTGGAGCTGATATAA+AGG 0.399716 1_2:+49656493 Msa0074750:CDS
TCCTTTGCCTTCTTAAAGTC+GGG 0.401797 1_2:-49657471 None:intergenic
CCAATATCTTCATATAGTTC+AGG 0.405223 1_2:-49655058 None:intergenic
GGCGGAGGAAGATAGATCTA+AGG 0.407560 1_2:+49653363 Msa0074750:CDS
AAGAAGGTCGGGGATAATAA+AGG 0.421527 1_2:-49657554 None:intergenic
CATATAGTTCAGGATGTGTA+AGG 0.423583 1_2:-49655048 None:intergenic
GGTCACCGGGATGGCCTTGT+CGG 0.424135 1_2:-49653102 None:intergenic
GCCTTGTCGGTTCATGCCGC+CGG 0.428871 1_2:-49653089 None:intergenic
GCTATTGTTTCCAGTTCGGT+TGG 0.429520 1_2:+49653451 Msa0074750:CDS
ATCCTTTGCCTTCTTAAAGT+CGG 0.438674 1_2:-49657472 None:intergenic
TGTTTCCAGTTCGGTTGGGC+CGG 0.438703 1_2:+49653456 Msa0074750:CDS
CTCAGCTTGCACTTCGATAC+CGG 0.441459 1_2:-49653250 None:intergenic
TAAAGTGTTTGGCACGTTCA+AGG 0.441738 1_2:-49653014 None:intergenic
GCTACATTCTTGCGTGTAGT+AGG 0.441990 1_2:+49655805 Msa0074750:CDS
TCGTAAACAACGCAAACAAA+AGG 0.444206 1_2:+49653192 Msa0074750:CDS
TCATGCTATTGTTTCCAGTT+CGG 0.448613 1_2:+49653447 Msa0074750:CDS
GTGGCTCGCCGATGAGTGTT+GGG 0.452232 1_2:+49653398 Msa0074750:CDS
CTATTGTTTCCAGTTCGGTT+GGG 0.452740 1_2:+49653452 Msa0074750:CDS
ACACGCGCCGGTGGTGCTGC+TGG 0.453673 1_2:-49653166 None:intergenic
CCGTCTTGTTTCCGGTCACC+GGG 0.455694 1_2:-49653115 None:intergenic
GTTGGGCCGGAGTATTATGT+TGG 0.456605 1_2:+49653469 Msa0074750:CDS
GAGTTGCTGAACCAGTTAGA+TGG 0.457903 1_2:+49656136 Msa0074750:CDS
CGACCAGGTCGTAGCAAAGC+TGG 0.459189 1_2:-49656220 None:intergenic
TCAAGAGAGGTTGAAGCCTC+AGG 0.464256 1_2:+49653333 Msa0074750:CDS
AACAAAGAAGAGTGAACAAA+AGG 0.465923 1_2:+49652983 Msa0074750:five_prime_UTR
ATGACGAAGGATGAATTCTC+TGG 0.469733 1_2:+49656479 Msa0074750:CDS
GTGATGTTTAAGAAGAAAGA+AGG 0.471189 1_2:+49657498 Msa0074750:CDS
CGTGGCTCGCCGATGAGTGT+TGG 0.479586 1_2:+49653397 Msa0074750:CDS
AGTTCAAACCTTTGCAAGCA+AGG 0.479869 1_2:-49655134 None:intergenic
TTGGGCCGGAGTATTATGTT+GGG 0.486241 1_2:+49653470 Msa0074750:CDS
ATCAAGACTTTCAATTCTGT+TGG 0.488586 1_2:-49656197 None:intergenic
TACGACCTGGTCGTATTGAT+AGG 0.488820 1_2:+49656230 Msa0074750:CDS
TTATATGGAGAACCTGGAAC+AGG 0.489995 1_2:+49655106 Msa0074750:CDS
TGAATTGATACAAAAGTACT+TGG 0.490609 1_2:+49655831 Msa0074750:CDS
GGTAACCGTGAAGCGGCATC+CGG 0.494841 1_2:-49653217 None:intergenic
AGAGAGACCTCAATCAAAAT+GGG 0.498162 1_2:-49657752 None:intergenic
AGATGAAAGTGTAAAGTGTT+TGG 0.498627 1_2:-49653025 None:intergenic
GACAAGGCCATCCCGGTGAC+CGG 0.499250 1_2:+49653104 Msa0074750:CDS
GAATCTTATGCTGACATTGG+TGG 0.503180 1_2:+49654980 Msa0074750:CDS
GTTGAAGCCTCAGGAGGAGA+AGG 0.505715 1_2:+49653342 Msa0074750:CDS
CCTTGTCGGTTCATGCCGCC+GGG 0.509201 1_2:-49653088 None:intergenic
AAATTAAGATACACACATCA+AGG 0.509917 1_2:+49656417 Msa0074750:intron
AAGGCAATATGTACTGAAGC+TGG 0.512575 1_2:+49656512 Msa0074750:CDS
ACTTTCATGACTGAGACCAT+TGG 0.513179 1_2:-49654941 None:intergenic
ATTCGAACCAGCAGCACCAC+CGG 0.515131 1_2:+49653159 Msa0074750:CDS
TTGGAATCTTATGCTGACAT+TGG 0.515821 1_2:+49654977 Msa0074750:CDS
TATTGGCATCAAGCCACCTA+AGG 0.517311 1_2:+49655075 Msa0074750:CDS
GAAATTTGAAAGCAAATATG+TGG 0.528960 1_2:-49657704 None:intergenic
AATCGATCGACGATGGGTCA+AGG 0.531008 1_2:+49653061 Msa0074750:exon
ATTTCCAAATCGATCGACGA+TGG 0.533966 1_2:+49653054 Msa0074750:exon
CTTGTTTCCGGTCACCGGGA+TGG 0.534444 1_2:-49653111 None:intergenic
AAAGTGTTTGGCACGTTCAA+GGG 0.538764 1_2:-49653013 None:intergenic
TCATCAATGAAAACAATAGC+AGG 0.540016 1_2:-49655907 None:intergenic
GAAGGATTATTTGTTGATGG+AGG 0.541197 1_2:+49653294 Msa0074750:CDS
CGTAAACAACGCAAACAAAA+GGG 0.541325 1_2:+49653193 Msa0074750:CDS
TCTAAGGGAACGCCGAATGA+AGG 0.547948 1_2:+49656544 Msa0074750:CDS
TTTCCAAATCGATCGACGAT+GGG 0.552350 1_2:+49653055 Msa0074750:exon
ATGAACCGACAAGGCCATCC+CGG 0.552573 1_2:+49653097 Msa0074750:CDS
AGGAAAGACCTTGCTTGCAA+AGG 0.553721 1_2:+49655126 Msa0074750:CDS
GACTCATCCCGACTTTAAGA+AGG 0.557748 1_2:+49657464 Msa0074750:CDS
ACAACGCAAACAAAAGGGTC+CGG 0.558245 1_2:+49653198 Msa0074750:CDS
GCCTCAGGAGGAGAAGGCGG+AGG 0.564123 1_2:+49653348 Msa0074750:CDS
AGGGTCCGGATGCCGCTTCA+CGG 0.566054 1_2:+49653212 Msa0074750:CDS
TGAGGCTGTTAAAGCTTGAG+AGG 0.566340 1_2:+49653269 Msa0074750:CDS
TATGAAACAATTTCCAAAGT+CGG 0.566779 1_2:-49657728 None:intergenic
GTCATATTATATGGAGAACC+TGG 0.570307 1_2:+49655100 Msa0074750:CDS
TCCAGATTCCCAACACTCAT+CGG 0.570778 1_2:-49653406 None:intergenic
GATCCAGCTTTGCTACGACC+TGG 0.573418 1_2:+49656217 Msa0074750:CDS
GCAAGACGAAGTTGATCCAA+TGG 0.579653 1_2:+49654925 Msa0074750:CDS
TACAGGTATGATGCTCACTC+AGG 0.582791 1_2:+49656082 Msa0074750:intron
GGAAGAATTTGTTATGACGA+AGG 0.583336 1_2:+49656466 Msa0074750:CDS
ACTTTATCCATATGCAGTTG+TGG 0.583879 1_2:+49657646 Msa0074750:three_prime_UTR
ATTAGCTGATGATGTCAACT+TGG 0.586051 1_2:+49656445 Msa0074750:CDS
TCCTCCGCCTTCTCCTCCTG+AGG 0.587094 1_2:-49653349 None:intergenic
GTGGAGAACGTGAAATTCAA+AGG 0.587888 1_2:+49656104 Msa0074750:CDS
GATAAGGATCAATTGGAGCC+TGG 0.591343 1_2:+49653508 Msa0074750:CDS
ACGGTTACCGACGGTGACTC+CGG 0.591399 1_2:+49653231 Msa0074750:CDS
AGCTGGCTTACTTGCTCTAA+GGG 0.591923 1_2:+49656529 Msa0074750:CDS
ATATAGTTCAGGATGTGTAA+GGG 0.593502 1_2:-49655047 None:intergenic
ATACAAAAGTACTTGGGAGA+TGG 0.593824 1_2:+49655838 Msa0074750:CDS
TCCCGACTTTAAGAAGGCAA+AGG 0.594284 1_2:+49657470 Msa0074750:CDS
ATTGGCATCAAGCCACCTAA+GGG 0.598240 1_2:+49655076 Msa0074750:CDS
AGGTATGATGCTCACTCAGG+TGG 0.601443 1_2:+49656085 Msa0074750:intron
AAAATCCCAACATAATACTC+CGG 0.602001 1_2:-49653475 None:intergenic
TGCCGCTTCACGGTTACCGA+CGG 0.603500 1_2:+49653222 Msa0074750:CDS
ATTGATGAAATTGATGCGGT+CGG 0.608145 1_2:+49655922 Msa0074750:CDS
AAGAAAGAAGGAGTGCCAGA+AGG 0.608420 1_2:+49657510 Msa0074750:CDS
GCAGATTCAGGAAATTAAAG+AGG 0.609731 1_2:+49655012 Msa0074750:CDS
GTTAAAGCTTGAGAGGGTGA+AGG 0.609846 1_2:+49653276 Msa0074750:CDS
AGATGGTCCAAAACTTGTGA+GGG 0.610145 1_2:+49655855 Msa0074750:CDS
CACCGTCGGTAACCGTGAAG+CGG 0.611205 1_2:-49653224 None:intergenic
TATAGTTCAGGATGTGTAAG+GGG 0.615490 1_2:-49655046 None:intergenic
AGTTTGTTGCGTATCAAGAG+AGG 0.615599 1_2:+49653320 Msa0074750:CDS
ACGATGGGTCAAGGAACTCC+CGG 0.616899 1_2:+49653070 Msa0074750:exon
CCCGGTGACCGGAAACAAGA+CGG 0.618125 1_2:+49653115 Msa0074750:CDS
CTCAGTCATGAAAGTCGAGA+AGG 0.618736 1_2:+49654949 Msa0074750:CDS
GCAGCACCACCGGCGCGTGT+AGG 0.619998 1_2:+49653169 Msa0074750:CDS
GAAGCCTCAGGAGGAGAAGG+CGG 0.620796 1_2:+49653345 Msa0074750:CDS
CCCGGCGGCATGAACCGACA+AGG 0.629868 1_2:+49653088 Msa0074750:CDS
TGGCATCAAGCCACCTAAGG+GGG 0.630368 1_2:+49655078 Msa0074750:CDS
TGCATCAAAATAGCACAACC+AGG 0.642077 1_2:-49653526 None:intergenic
ATCTTCCTATCAATACGACC+AGG 0.647291 1_2:-49656235 None:intergenic
TTACGACCTACACGCGCCGG+TGG 0.648178 1_2:-49653175 None:intergenic
GAGATGGTCCAAAACTTGTG+AGG 0.650908 1_2:+49655854 Msa0074750:CDS
CGGTATCGAAGTGCAAGCTG+AGG 0.651265 1_2:+49653251 Msa0074750:CDS
TGTTTACGACCTACACGCGC+CGG 0.657461 1_2:-49653178 None:intergenic
TTCGATACCGGAGTCACCGT+CGG 0.658712 1_2:-49653238 None:intergenic
AGAGAGGTTGAAGCCTCAGG+AGG 0.663698 1_2:+49653336 Msa0074750:CDS
TTTCATTGATGAAATTGATG+CGG 0.663748 1_2:+49655918 Msa0074750:CDS
AATAGCAGGAGAAAGATCAT+CGG 0.664706 1_2:-49655893 None:intergenic
ATGTCAGCATAAGATTCCAA+AGG 0.668551 1_2:-49654974 None:intergenic
TTGATGCGGTCGGTACAAAG+AGG 0.668806 1_2:+49655932 Msa0074750:CDS
GAGGCTGTTAAAGCTTGAGA+GGG 0.670530 1_2:+49653270 Msa0074750:CDS
GAATTGATACAAAAGTACTT+GGG 0.673200 1_2:+49655832 Msa0074750:CDS
TTGGCATCAAGCCACCTAAG+GGG 0.701914 1_2:+49655077 Msa0074750:CDS
GATGAGTGTTGGGAATCTGG+AGG 0.708876 1_2:+49653408 Msa0074750:CDS
TCTAAGGTTGATGATCTACG+TGG 0.778964 1_2:+49653379 Msa0074750:CDS
ATGGGTCAAGGAACTCCCGG+CGG 0.785552 1_2:+49653073 Msa0074750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAATAAATAAATCG+TGG + chr1_2:49657017-49657036 Msa0074750:intron 10.0%
!!! TGTTGTTTTTATAATTTTGT+TGG + chr1_2:49653626-49653645 Msa0074750:intron 15.0%
!!! TTTTATAATTTTGTTGGAAT+TGG + chr1_2:49653632-49653651 Msa0074750:intron 15.0%
!!! TCATTATGATTTTGATTATA+AGG + chr1_2:49653684-49653703 Msa0074750:intron 15.0%
!!! CATTATGATTTTGATTATAA+GGG + chr1_2:49653685-49653704 Msa0074750:intron 15.0%
!! TTTCAAAAAAGAGATTATAA+GGG + chr1_2:49653717-49653736 Msa0074750:intron 15.0%
!!! CTTATTTTCATAAATTCTTT+AGG + chr1_2:49653846-49653865 Msa0074750:intron 15.0%
!! GAAATATTCTTTATAGAATT+AGG + chr1_2:49654812-49654831 Msa0074750:intron 15.0%
!!! ATTATGATTGATTTTTTATC+AGG + chr1_2:49654880-49654899 Msa0074750:intron 15.0%
!!! AACATGATTTTTTTCATTTT+TGG + chr1_2:49655379-49655398 Msa0074750:intron 15.0%
!!! ATAAATTTTTAACCTTCATT+CGG - chr1_2:49656559-49656578 None:intergenic 15.0%
!! TATTTATATACAGCATTTAT+TGG + chr1_2:49656721-49656740 Msa0074750:intron 15.0%
!! ATTTATATACAGCATTTATT+GGG + chr1_2:49656722-49656741 Msa0074750:intron 15.0%
!!! TTGTTTCATCTTTTAATATT+AGG + chr1_2:49656937-49656956 Msa0074750:intron 15.0%
!!! TGTTTCATCTTTTAATATTA+GGG + chr1_2:49656938-49656957 Msa0074750:intron 15.0%
!! TAAAAAAACATAAGATTGAT+AGG - chr1_2:49657345-49657364 None:intergenic 15.0%
!!! TCAATCTTATGTTTTTTTAA+AGG + chr1_2:49657346-49657365 Msa0074750:intron 15.0%
!! AATAGTAAGATATCATAAAT+TGG - chr1_2:49657423-49657442 None:intergenic 15.0%
!!! GATTTTATCTTTTGTTGATA+AGG + chr1_2:49653492-49653511 Msa0074750:CDS 20.0%
!! AAATTTGAATTGTTGATCTA+GGG + chr1_2:49653586-49653605 Msa0074750:intron 20.0%
!! CTTTCAAAAAAGAGATTATA+AGG + chr1_2:49653716-49653735 Msa0074750:intron 20.0%
!!! TATAAACATTTAAGCTGTTT+TGG - chr1_2:49653879-49653898 None:intergenic 20.0%
!!! TTCACTCTCATTTTATAAAT+GGG - chr1_2:49654093-49654112 None:intergenic 20.0%
!!! ATTCACTCTCATTTTATAAA+TGG - chr1_2:49654094-49654113 None:intergenic 20.0%
!!! TTCACTCTAGTTTTATAAAA+GGG - chr1_2:49654166-49654185 None:intergenic 20.0%
!!! ATTCACTCTAGTTTTATAAA+AGG - chr1_2:49654167-49654186 None:intergenic 20.0%
!! ATTTGATACCATACTATAAT+TGG + chr1_2:49654735-49654754 Msa0074750:intron 20.0%
!!! ATGAAAATTAGGAAAAGTTT+TGG + chr1_2:49654787-49654806 Msa0074750:intron 20.0%
!! TATATGAATCCTAAAATTGT+GGG - chr1_2:49655970-49655989 None:intergenic 20.0%
!!! CTTTTAGTATTAAGACAATA+AGG - chr1_2:49656818-49656837 None:intergenic 20.0%
!!! ATAGTTAGAAAAAGTTTTGT+GGG - chr1_2:49657247-49657266 None:intergenic 20.0%
!!! TATAGTTAGAAAAAGTTTTG+TGG - chr1_2:49657248-49657267 None:intergenic 20.0%
!!! TAACTATAGTTACATTTTGT+AGG + chr1_2:49657260-49657279 Msa0074750:intron 20.0%
!! AGATCAAATAAAAAGAAAGA+AGG - chr1_2:49657573-49657592 None:intergenic 20.0%
!!! TTTTGTTGATAAGGATCAAT+TGG + chr1_2:49653501-49653520 Msa0074750:CDS 25.0%
!!! TGCTATTTTGATGCATAATA+AGG + chr1_2:49653534-49653553 Msa0074750:CDS 25.0%
! GAAATTTGAATTGTTGATCT+AGG + chr1_2:49653585-49653604 Msa0074750:intron 25.0%
!! TGACTTATTTGAGTTTACTT+TGG + chr1_2:49653751-49653770 Msa0074750:intron 25.0%
!! GACTTATTTGAGTTTACTTT+GGG + chr1_2:49653752-49653771 Msa0074750:intron 25.0%
! ATAACATGTCTATAAGTTGT+TGG + chr1_2:49653822-49653841 Msa0074750:intron 25.0%
! ATAAGCACTTATATGATAAG+CGG + chr1_2:49653913-49653932 Msa0074750:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG + chr1_2:49653955-49653974 Msa0074750:intron 25.0%
! TGTTTGATGTAACTAAAGTA+TGG + chr1_2:49654003-49654022 Msa0074750:intron 25.0%
! GTTTGATGTAACTAAAGTAT+GGG + chr1_2:49654004-49654023 Msa0074750:intron 25.0%
! TATAAAATGAGAGTGAATTG+AGG + chr1_2:49654096-49654115 Msa0074750:intron 25.0%
! TTATAGAATTAGCTATCTCT+AGG + chr1_2:49654335-49654354 Msa0074750:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG + chr1_2:49653955-49653974 Msa0074750:intron 25.0%
! ATACCATACTATAATTGGTT+TGG + chr1_2:49654740-49654759 Msa0074750:intron 25.0%
!! TACCATACTATAATTGGTTT+GGG + chr1_2:49654741-49654760 Msa0074750:intron 25.0%
! CAAATTATACAGACAATAAC+AGG - chr1_2:49654843-49654862 None:intergenic 25.0%
!!! GATTTTTTATCAGGTTCTAT+CGG + chr1_2:49654889-49654908 Msa0074750:intron 25.0%
!! GATAAATACTGTATTGATAC+TGG + chr1_2:49655497-49655516 Msa0074750:intron 25.0%
!!! TGAATTGATACAAAAGTACT+TGG + chr1_2:49655831-49655850 Msa0074750:CDS 25.0%
!!! GAATTGATACAAAAGTACTT+GGG + chr1_2:49655832-49655851 Msa0074750:CDS 25.0%
! TTTCATTGATGAAATTGATG+CGG + chr1_2:49655918-49655937 Msa0074750:CDS 25.0%
! CTATATGAATCCTAAAATTG+TGG - chr1_2:49655971-49655990 None:intergenic 25.0%
!!! CACAATTTTAGGATTCATAT+AGG + chr1_2:49655969-49655988 Msa0074750:intron 25.0%
!!! AATTTTAGGATTCATATAGG+TGG + chr1_2:49655972-49655991 Msa0074750:intron 25.0%
!!! ATTTTAGGATTCATATAGGT+GGG + chr1_2:49655973-49655992 Msa0074750:intron 25.0%
! CAATTAAACTCATGAATGTA+AGG - chr1_2:49656051-49656070 None:intergenic 25.0%
! TAATTGTTAATATGCCTTAC+AGG + chr1_2:49656065-49656084 Msa0074750:intron 25.0%
! AAATTAAGATACACACATCA+AGG + chr1_2:49656417-49656436 Msa0074750:intron 25.0%
! ACCCAAATATATTATGCTAA+GGG + chr1_2:49656652-49656671 Msa0074750:intron 25.0%
! AAAAACTAAGTTGTAGTTGT+TGG - chr1_2:49656901-49656920 None:intergenic 25.0%
!! TTCATCTTTTAATATTAGGG+TGG + chr1_2:49656941-49656960 Msa0074750:intron 25.0%
! GATTCACTGAAGTAAAAAAT+TGG - chr1_2:49657308-49657327 None:intergenic 25.0%
! TAAGATTGATAGGTAAAGAT+GGG - chr1_2:49657335-49657354 None:intergenic 25.0%
! ATAAGATTGATAGGTAAAGA+TGG - chr1_2:49657336-49657355 None:intergenic 25.0%
!! GATTTGTCTGTATTATCTTT+TGG + chr1_2:49657368-49657387 Msa0074750:intron 25.0%
! AGTAAGATATCATAAATTGG+AGG - chr1_2:49657420-49657439 None:intergenic 25.0%
!!! ATTGCTTTTATATCTTGTTC+AGG + chr1_2:49657440-49657459 Msa0074750:intron 25.0%
! AAATAAAAAGAAAGAAGGTC+GGG - chr1_2:49657568-49657587 None:intergenic 25.0%
! CAAATAAAAAGAAAGAAGGT+CGG - chr1_2:49657569-49657588 None:intergenic 25.0%
!! GTTATACTTTTGCAAACAAA+TGG + chr1_2:49657598-49657617 Msa0074750:three_prime_UTR 25.0%
! GAAATTTGAAAGCAAATATG+TGG - chr1_2:49657707-49657726 None:intergenic 25.0%
! TATGAAACAATTTCCAAAGT+CGG - chr1_2:49657731-49657750 None:intergenic 25.0%
AACAAAGAAGAGTGAACAAA+AGG + chr1_2:49652983-49653002 Msa0074750:five_prime_UTR 30.0%
! AGATGAAAGTGTAAAGTGTT+TGG - chr1_2:49653028-49653047 None:intergenic 30.0%
AAAATCCCAACATAATACTC+CGG - chr1_2:49653478-49653497 None:intergenic 30.0%
! AGAGATTATAAGGGTTTGTT+TGG + chr1_2:49653726-49653745 Msa0074750:intron 30.0%
GCTAATAAGCCAAAAAGATA+CGG - chr1_2:49653981-49654000 None:intergenic 30.0%
!!! CTCATTTTATAAATGGGTTG+AGG - chr1_2:49654087-49654106 None:intergenic 30.0%
TATAAAACTAGAGTGAATCG+AGG + chr1_2:49654169-49654188 Msa0074750:intron 30.0%
AAGCTCATTACTTCTTCAAA+AGG - chr1_2:49654714-49654733 None:intergenic 30.0%
TTGAACCTGGAATGAAAATT+AGG + chr1_2:49654776-49654795 Msa0074750:intron 30.0%
! CTTTTCCTAATTTTCATTCC+AGG - chr1_2:49654784-49654803 None:intergenic 30.0%
ATATAGTTCAGGATGTGTAA+GGG - chr1_2:49655050-49655069 None:intergenic 30.0%
CCAATATCTTCATATAGTTC+AGG - chr1_2:49655061-49655080 None:intergenic 30.0%
CCTGAACTATATGAAGATAT+TGG + chr1_2:49655058-49655077 Msa0074750:CDS 30.0%
TCAATAATGAATCAATGCTG+TGG + chr1_2:49655178-49655197 Msa0074750:intron 30.0%
ATTATCAGATCTGTAGAGTT+TGG + chr1_2:49655250-49655269 Msa0074750:intron 30.0%
AAGATGAAAATCTCTGTGTT+TGG + chr1_2:49655413-49655432 Msa0074750:intron 30.0%
AGATGAAAATCTCTGTGTTT+GGG + chr1_2:49655414-49655433 Msa0074750:intron 30.0%
! GATTCCTTATGTACTGTTTT+GGG + chr1_2:49655444-49655463 Msa0074750:intron 30.0%
! ATTCCTTATGTACTGTTTTG+GGG + chr1_2:49655445-49655464 Msa0074750:intron 30.0%
TGCTTCTTACTAATACAACT+TGG - chr1_2:49655619-49655638 None:intergenic 30.0%
! TTAAAGAAGCAGCAGTTTTT+CGG - chr1_2:49655663-49655682 None:intergenic 30.0%
TCATCAATGAAAACAATAGC+AGG - chr1_2:49655910-49655929 None:intergenic 30.0%
!!! TTTTAGGATTCATATAGGTG+GGG + chr1_2:49655974-49655993 Msa0074750:intron 30.0%
TTGAATCAAAACCATCTAAC+TGG - chr1_2:49656150-49656169 None:intergenic 30.0%
!!! TTAGATGGTTTTGATTCAAG+AGG + chr1_2:49656151-49656170 Msa0074750:CDS 30.0%
ATCAAGACTTTCAATTCTGT+TGG - chr1_2:49656200-49656219 None:intergenic 30.0%
CAAAACTAATCATGTTTACC+TGG - chr1_2:49656303-49656322 None:intergenic 30.0%
GAATCAACAGAAACAACATT+AGG - chr1_2:49656331-49656350 None:intergenic 30.0%
! TGCATATTTAAGATACCACA+TGG - chr1_2:49656353-49656372 None:intergenic 30.0%
GTCAAAACTAGCAAGTTAAT+AGG - chr1_2:49656612-49656631 None:intergenic 30.0%
GACCCAAATATATTATGCTA+AGG + chr1_2:49656651-49656670 Msa0074750:intron 30.0%
GCCCTTAGCATAATATATTT+GGG - chr1_2:49656656-49656675 None:intergenic 30.0%
TATACAGCATTTATTGGGTT+AGG + chr1_2:49656727-49656746 Msa0074750:intron 30.0%
ATACAGCATTTATTGGGTTA+GGG + chr1_2:49656728-49656747 Msa0074750:intron 30.0%
AGCAACCTAAAAAATTTGCA+TGG + chr1_2:49656789-49656808 Msa0074750:intron 30.0%
!!! AGCATTTTTTATTCTGACAC+TGG - chr1_2:49657139-49657158 None:intergenic 30.0%
AAATGCTTGTTTGATTCTAC+TGG + chr1_2:49657152-49657171 Msa0074750:intron 30.0%
AATGCTTGTTTGATTCTACT+GGG + chr1_2:49657153-49657172 Msa0074750:intron 30.0%
GGTAACTTGAGTGTATATTT+AGG + chr1_2:49657281-49657300 Msa0074750:intron 30.0%
GTGATGTTTAAGAAGAAAGA+AGG + chr1_2:49657498-49657517 Msa0074750:CDS 30.0%
AATAAAAAGAAAGAAGGTCG+GGG - chr1_2:49657567-49657586 None:intergenic 30.0%
!!! TTCATATCCCATTTTGATTG+AGG + chr1_2:49657745-49657764 Msa0074750:three_prime_UTR 30.0%
TCGTAAACAACGCAAACAAA+AGG + chr1_2:49653192-49653211 Msa0074750:CDS 35.0%
CGTAAACAACGCAAACAAAA+GGG + chr1_2:49653193-49653212 Msa0074750:CDS 35.0%
! GGTGAAGGATTATTTGTTGA+TGG + chr1_2:49653291-49653310 Msa0074750:CDS 35.0%
! GAAGGATTATTTGTTGATGG+AGG + chr1_2:49653294-49653313 Msa0074750:CDS 35.0%
TCATGCTATTGTTTCCAGTT+CGG + chr1_2:49653447-49653466 Msa0074750:CDS 35.0%
TGATGTAACTAAAGTATGGG+AGG + chr1_2:49654007-49654026 Msa0074750:intron 35.0%
GATGTAACTAAAGTATGGGA+GGG + chr1_2:49654008-49654027 Msa0074750:intron 35.0%
!! TCGGAGTAATTTGCTGTTTA+AGG + chr1_2:49654194-49654213 Msa0074750:intron 35.0%
!! ATTTGCTGTTTAAGGTAGAC+TGG + chr1_2:49654202-49654221 Msa0074750:intron 35.0%
!! TTTGCTGTTTAAGGTAGACT+GGG + chr1_2:49654203-49654222 Msa0074750:intron 35.0%
TTCATCGAAAGGAGATGAAT+GGG - chr1_2:49654262-49654281 None:intergenic 35.0%
ATTCATCGAAAGGAGATGAA+TGG - chr1_2:49654263-49654282 None:intergenic 35.0%
AAGCGCATAAATTCATCGAA+AGG - chr1_2:49654273-49654292 None:intergenic 35.0%
!! TAGTTGCTGTTTAATGTGAC+TGG + chr1_2:49654624-49654643 Msa0074750:intron 35.0%
!! AGTTGCTGTTTAATGTGACT+GGG + chr1_2:49654625-49654644 Msa0074750:intron 35.0%
TGTTTAATGTGACTGGGAAT+GGG + chr1_2:49654631-49654650 Msa0074750:intron 35.0%
ACTTCTTCAAAAGGATACGA+AGG - chr1_2:49654705-49654724 None:intergenic 35.0%
CTCCCAAACCAATTATAGTA+TGG - chr1_2:49654746-49654765 None:intergenic 35.0%
ATGTCAGCATAAGATTCCAA+AGG - chr1_2:49654977-49654996 None:intergenic 35.0%
TTGGAATCTTATGCTGACAT+TGG + chr1_2:49654977-49654996 Msa0074750:CDS 35.0%
GCAGATTCAGGAAATTAAAG+AGG + chr1_2:49655012-49655031 Msa0074750:CDS 35.0%
TATAGTTCAGGATGTGTAAG+GGG - chr1_2:49655049-49655068 None:intergenic 35.0%
CATATAGTTCAGGATGTGTA+AGG - chr1_2:49655051-49655070 None:intergenic 35.0%
GTCATATTATATGGAGAACC+TGG + chr1_2:49655100-49655119 Msa0074750:CDS 35.0%
GATGAAAATCTCTGTGTTTG+GGG + chr1_2:49655415-49655434 Msa0074750:intron 35.0%
ATGAAAATCTCTGTGTTTGG+GGG + chr1_2:49655416-49655435 Msa0074750:intron 35.0%
! GGATTCCTTATGTACTGTTT+TGG + chr1_2:49655443-49655462 Msa0074750:intron 35.0%
!! TTCCTTATGTACTGTTTTGG+GGG + chr1_2:49655446-49655465 Msa0074750:intron 35.0%
!! ATACAAAAGTACTTGGGAGA+TGG + chr1_2:49655838-49655857 Msa0074750:CDS 35.0%
! AAAAGTTCCCTCACAAGTTT+TGG - chr1_2:49655865-49655884 None:intergenic 35.0%
AATAGCAGGAGAAAGATCAT+CGG - chr1_2:49655896-49655915 None:intergenic 35.0%
ATTGATGAAATTGATGCGGT+CGG + chr1_2:49655922-49655941 Msa0074750:CDS 35.0%
! TTTAGGATTCATATAGGTGG+GGG + chr1_2:49655975-49655994 Msa0074750:intron 35.0%
TGATGCATTGTATCACTTCA+TGG + chr1_2:49656008-49656027 Msa0074750:intron 35.0%
ATCACTTCATGGACTCTTTA+AGG + chr1_2:49656019-49656038 Msa0074750:intron 35.0%
AGGAGATGTAAAAGTGATTC+TGG + chr1_2:49656171-49656190 Msa0074750:CDS 35.0%
!!! CTTGTTTTGATATCAGGAAG+AGG - chr1_2:49656268-49656287 None:intergenic 35.0%
!!! CGTCTTCTTGTTTTGATATC+AGG - chr1_2:49656274-49656293 None:intergenic 35.0%
! AACAAGAAGACGTATTTTCC+AGG + chr1_2:49656282-49656301 Msa0074750:CDS 35.0%
!! TTGTTTCTGTTGATTCCATG+TGG + chr1_2:49656335-49656354 Msa0074750:intron 35.0%
! ATTAGCTGATGATGTCAACT+TGG + chr1_2:49656445-49656464 Msa0074750:CDS 35.0%
!! GGAAGAATTTGTTATGACGA+AGG + chr1_2:49656466-49656485 Msa0074750:CDS 35.0%
!! ATTCTCTGGAGCTGATATAA+AGG + chr1_2:49656493-49656512 Msa0074750:CDS 35.0%
CGCCCTTAGCATAATATATT+TGG - chr1_2:49656657-49656676 None:intergenic 35.0%
!!! GGATGCCATGCAAATTTTTT+AGG - chr1_2:49656797-49656816 None:intergenic 35.0%
AAGTTGTAGTTGTTGGAACT+GGG - chr1_2:49656894-49656913 None:intergenic 35.0%
TAAGTTGTAGTTGTTGGAAC+TGG - chr1_2:49656895-49656914 None:intergenic 35.0%
AAAAGAACAAAAGCAGGCTT+GGG - chr1_2:49657071-49657090 None:intergenic 35.0%
TGATCCAAAAGAACAAAAGC+AGG - chr1_2:49657077-49657096 None:intergenic 35.0%
CTCAGATATCCTGTCAATAT+AGG - chr1_2:49657183-49657202 None:intergenic 35.0%
!! GCATGTCTTGACTTTAGAAT+GGG + chr1_2:49657209-49657228 Msa0074750:intron 35.0%
ATCCTTTGCCTTCTTAAAGT+CGG - chr1_2:49657475-49657494 None:intergenic 35.0%
CTTCACATATATAGTCCTTC+TGG - chr1_2:49657528-49657547 None:intergenic 35.0%
ACTTTATCCATATGCAGTTG+TGG + chr1_2:49657646-49657665 Msa0074750:three_prime_UTR 35.0%
ATTTCATCCACAACTGCATA+TGG - chr1_2:49657656-49657675 None:intergenic 35.0%
!! CTTTCAAATTTCACCGACTT+TGG + chr1_2:49657715-49657734 Msa0074750:three_prime_UTR 35.0%
AGAGAGACCTCAATCAAAAT+GGG - chr1_2:49657755-49657774 None:intergenic 35.0%
TAGAGAGACCTCAATCAAAA+TGG - chr1_2:49657756-49657775 None:intergenic 35.0%
! AAAGTGTTTGGCACGTTCAA+GGG - chr1_2:49653016-49653035 None:intergenic 40.0%
! TAAAGTGTTTGGCACGTTCA+AGG - chr1_2:49653017-49653036 None:intergenic 40.0%
ATTTCCAAATCGATCGACGA+TGG + chr1_2:49653054-49653073 Msa0074750:exon 40.0%
TTTCCAAATCGATCGACGAT+GGG + chr1_2:49653055-49653074 Msa0074750:exon 40.0%
!! AGTTTGTTGCGTATCAAGAG+AGG + chr1_2:49653320-49653339 Msa0074750:CDS 40.0%
!! TCTAAGGTTGATGATCTACG+TGG + chr1_2:49653379-49653398 Msa0074750:CDS 40.0%
CTATTGTTTCCAGTTCGGTT+GGG + chr1_2:49653452-49653471 Msa0074750:CDS 40.0%
TGCATCAAAATAGCACAACC+AGG - chr1_2:49653529-49653548 None:intergenic 40.0%
AGACTGTTTGAGGGAGATTA+TGG + chr1_2:49653790-49653809 Msa0074750:intron 40.0%
!! CAAAAAGATACGGCCTTGTT+TGG - chr1_2:49653971-49653990 None:intergenic 40.0%
! CAAACAAGGCCGTATCTTTT+TGG + chr1_2:49653969-49653988 Msa0074750:intron 40.0%
! TGTTTAAGGTAGACTGGGAA+TGG + chr1_2:49654208-49654227 Msa0074750:intron 40.0%
! GTTTAAGGTAGACTGGGAAT+GGG + chr1_2:49654209-49654228 Msa0074750:intron 40.0%
!! CAAAAAGACAAGGCCTTGTT+TGG - chr1_2:49654497-49654516 None:intergenic 40.0%
!! CAAACAAGGCCTTGTCTTTT+TGG + chr1_2:49654495-49654514 Msa0074750:intron 40.0%
CTGTTTAATGTGACTGGGAA+TGG + chr1_2:49654630-49654649 Msa0074750:intron 40.0%
! GAGCATCTGAATTTTGAACC+TGG + chr1_2:49654763-49654782 Msa0074750:intron 40.0%
! TATCAGGTTCTATCGGTTGT+TGG + chr1_2:49654896-49654915 Msa0074750:intron 40.0%
ACTTTCATGACTGAGACCAT+TGG - chr1_2:49654944-49654963 None:intergenic 40.0%
GAATCTTATGCTGACATTGG+TGG + chr1_2:49654980-49654999 Msa0074750:CDS 40.0%
TATAATATGACCCCCTTAGG+TGG - chr1_2:49655091-49655110 None:intergenic 40.0%
CCATATAATATGACCCCCTT+AGG - chr1_2:49655094-49655113 None:intergenic 40.0%
CCTAAGGGGGTCATATTATA+TGG + chr1_2:49655091-49655110 Msa0074750:CDS 40.0%
TTATATGGAGAACCTGGAAC+AGG + chr1_2:49655106-49655125 Msa0074750:CDS 40.0%
AGTTCAAACCTTTGCAAGCA+AGG - chr1_2:49655137-49655156 None:intergenic 40.0%
! GCTATTTGTCTGTTGCTTAC+AGG + chr1_2:49655335-49655354 Msa0074750:intron 40.0%
!! TGTTGCTTACAGGTACTGAA+GGG + chr1_2:49655345-49655364 Msa0074750:intron 40.0%
TGAAAATCTCTGTGTTTGGG+GGG + chr1_2:49655417-49655436 Msa0074750:intron 40.0%
AAAAACATGCACACTCGCAA+AGG - chr1_2:49655550-49655569 None:intergenic 40.0%
! CTAACTGATAGTGCATGTGA+TGG - chr1_2:49655737-49655756 None:intergenic 40.0%
CATCACATGCACTATCAGTT+AGG + chr1_2:49655735-49655754 Msa0074750:intron 40.0%
AGATGGTCCAAAACTTGTGA+GGG + chr1_2:49655855-49655874 Msa0074750:CDS 40.0%
GTGGAGAACGTGAAATTCAA+AGG + chr1_2:49656104-49656123 Msa0074750:CDS 40.0%
ATCTTCCTATCAATACGACC+AGG - chr1_2:49656238-49656257 None:intergenic 40.0%
ATGACGAAGGATGAATTCTC+TGG + chr1_2:49656479-49656498 Msa0074750:CDS 40.0%
AAGGCAATATGTACTGAAGC+TGG + chr1_2:49656512-49656531 Msa0074750:CDS 40.0%
ATATTATGCTAAGGGCGAGT+TGG + chr1_2:49656660-49656679 Msa0074750:intron 40.0%
TATTATGCTAAGGGCGAGTT+GGG + chr1_2:49656661-49656680 Msa0074750:intron 40.0%
!! AAATCGTGGAAAGTACTCCT+TGG + chr1_2:49657031-49657050 Msa0074750:intron 40.0%
AAAGAACAAAAGCAGGCTTG+GGG - chr1_2:49657070-49657089 None:intergenic 40.0%
CAAAAGAACAAAAGCAGGCT+TGG - chr1_2:49657072-49657091 None:intergenic 40.0%
!! CAAGCCTGCTTTTGTTCTTT+TGG + chr1_2:49657070-49657089 Msa0074750:intron 40.0%
! GGCATGTCTTGACTTTAGAA+TGG + chr1_2:49657208-49657227 Msa0074750:intron 40.0%
TCCTTTGCCTTCTTAAAGTC+GGG - chr1_2:49657474-49657493 None:intergenic 40.0%
AAGAAGGTCGGGGATAATAA+AGG - chr1_2:49657557-49657576 None:intergenic 40.0%
ACAACGCAAACAAAAGGGTC+CGG + chr1_2:49653198-49653217 Msa0074750:CDS 45.0%
TGAGGCTGTTAAAGCTTGAG+AGG + chr1_2:49653269-49653288 Msa0074750:CDS 45.0%
GAGGCTGTTAAAGCTTGAGA+GGG + chr1_2:49653270-49653289 Msa0074750:CDS 45.0%
GTTAAAGCTTGAGAGGGTGA+AGG + chr1_2:49653276-49653295 Msa0074750:CDS 45.0%
TCCAGATTCCCAACACTCAT+CGG - chr1_2:49653409-49653428 None:intergenic 45.0%
GCTATTGTTTCCAGTTCGGT+TGG + chr1_2:49653451-49653470 Msa0074750:CDS 45.0%
! TTGGGCCGGAGTATTATGTT+GGG + chr1_2:49653470-49653489 Msa0074750:CDS 45.0%
GATAAGGATCAATTGGAGCC+TGG + chr1_2:49653508-49653527 Msa0074750:CDS 45.0%
ATTAGTCGCGAGACTGTTTG+AGG + chr1_2:49653780-49653799 Msa0074750:intron 45.0%
TTAGTCGCGAGACTGTTTGA+GGG + chr1_2:49653781-49653800 Msa0074750:intron 45.0%
GGAGGGTTGAGAATTAAGAG+TGG + chr1_2:49654025-49654044 Msa0074750:intron 45.0%
! TGCTGTTTGAGAGTTGAGAG+TGG + chr1_2:49654132-49654151 Msa0074750:intron 45.0%
ACTAGAGTGAATCGAGGCAT+CGG + chr1_2:49654175-49654194 Msa0074750:intron 45.0%
TACCAGCCACACTGTAATTG+CGG + chr1_2:49654300-49654319 Msa0074750:intron 45.0%
TCTCAACCGCAATTACAGTG+TGG - chr1_2:49654309-49654328 None:intergenic 45.0%
GCTAACGAGCCAAAAAGACA+AGG - chr1_2:49654507-49654526 None:intergenic 45.0%
! GCAAGACGAAGTTGATCCAA+TGG + chr1_2:49654925-49654944 Msa0074750:CDS 45.0%
CTCAGTCATGAAAGTCGAGA+AGG + chr1_2:49654949-49654968 Msa0074750:CDS 45.0%
TGGTTTAGATGCGCAGATTC+AGG + chr1_2:49655000-49655019 Msa0074750:CDS 45.0%
TATTGGCATCAAGCCACCTA+AGG + chr1_2:49655075-49655094 Msa0074750:CDS 45.0%
ATTGGCATCAAGCCACCTAA+GGG + chr1_2:49655076-49655095 Msa0074750:CDS 45.0%
AGGAAAGACCTTGCTTGCAA+AGG + chr1_2:49655126-49655145 Msa0074750:CDS 45.0%
!! CTGTTGCTTACAGGTACTGA+AGG + chr1_2:49655344-49655363 Msa0074750:intron 45.0%
CACCCCCAAAACAGTACATA+AGG - chr1_2:49655451-49655470 None:intergenic 45.0%
!!! CTTATGTACTGTTTTGGGGG+TGG + chr1_2:49655449-49655468 Msa0074750:intron 45.0%
! ACAGTTTGCTCTTCTGTCTG+TGG + chr1_2:49655583-49655602 Msa0074750:intron 45.0%
ATACATGCTCTTGTGCCTTC+AGG + chr1_2:49655762-49655781 Msa0074750:intron 45.0%
GCTACATTCTTGCGTGTAGT+AGG + chr1_2:49655805-49655824 Msa0074750:CDS 45.0%
GAGATGGTCCAAAACTTGTG+AGG + chr1_2:49655854-49655873 Msa0074750:CDS 45.0%
! GCTGCTGAACCCACAATTTT+AGG + chr1_2:49655958-49655977 Msa0074750:intron 45.0%
GAGTGAGCATCATACCTGTA+AGG - chr1_2:49656082-49656101 None:intergenic 45.0%
TACAGGTATGATGCTCACTC+AGG + chr1_2:49656082-49656101 Msa0074750:intron 45.0%
GAGTTGCTGAACCAGTTAGA+TGG + chr1_2:49656136-49656155 Msa0074750:CDS 45.0%
! TACGACCTGGTCGTATTGAT+AGG + chr1_2:49656230-49656249 Msa0074750:CDS 45.0%
! AAGCTGGCTTACTTGCTCTA+AGG + chr1_2:49656528-49656547 Msa0074750:CDS 45.0%
! AGCTGGCTTACTTGCTCTAA+GGG + chr1_2:49656529-49656548 Msa0074750:CDS 45.0%
ATTATGCTAAGGGCGAGTTG+GGG + chr1_2:49656662-49656681 Msa0074750:intron 45.0%
! TATTGGGTTAGGGTTGTCTG+TGG + chr1_2:49656738-49656757 Msa0074750:intron 45.0%
! ATTGGGTTAGGGTTGTCTGT+GGG + chr1_2:49656739-49656758 Msa0074750:intron 45.0%
TAGTTGTTGGAACTGGGAAG+AGG - chr1_2:49656888-49656907 None:intergenic 45.0%
ATCATCATACTTTCCCGCGA+GGG + chr1_2:49657093-49657112 Msa0074750:intron 45.0%
CTGGGTAGTCCTATATTGAC+AGG + chr1_2:49657171-49657190 Msa0074750:intron 45.0%
CTAAAGTCAAGACATGCCTC+AGG - chr1_2:49657206-49657225 None:intergenic 45.0%
! GACTCATCCCGACTTTAAGA+AGG + chr1_2:49657464-49657483 Msa0074750:CDS 45.0%
! TCCCGACTTTAAGAAGGCAA+AGG + chr1_2:49657470-49657489 Msa0074750:CDS 45.0%
!! AAGAAAGAAGGAGTGCCAGA+AGG + chr1_2:49657510-49657529 Msa0074750:CDS 45.0%
TGACCCATCGTCGATCGATT+TGG - chr1_2:49653061-49653080 None:intergenic 50.0%
AATCGATCGACGATGGGTCA+AGG + chr1_2:49653061-49653080 Msa0074750:exon 50.0%
!! TATCGCTGCCGTCTTGTTTC+CGG - chr1_2:49653126-49653145 None:intergenic 50.0%
CTCAGCTTGCACTTCGATAC+CGG - chr1_2:49653253-49653272 None:intergenic 50.0%
TCAAGAGAGGTTGAAGCCTC+AGG + chr1_2:49653333-49653352 Msa0074750:CDS 50.0%
GGCGGAGGAAGATAGATCTA+AGG + chr1_2:49653363-49653382 Msa0074750:CDS 50.0%
!! GATGAGTGTTGGGAATCTGG+AGG + chr1_2:49653408-49653427 Msa0074750:CDS 50.0%
! GTTGGGCCGGAGTATTATGT+TGG + chr1_2:49653469-49653488 Msa0074750:CDS 50.0%
TAGACTGGGAATGGGAGTTG+TGG + chr1_2:49654217-49654236 Msa0074750:intron 50.0%
AACCGCAATTACAGTGTGGC+TGG - chr1_2:49654305-49654324 None:intergenic 50.0%
ATGCAGCGCAACTGAAGTGT+GGG + chr1_2:49654535-49654554 Msa0074750:intron 50.0%
!! GGACGGTTGAGAGTTGATAG+TGG + chr1_2:49654556-49654575 Msa0074750:intron 50.0%
GAAAGTCGAGAAGGCTCCTT+TGG + chr1_2:49654958-49654977 Msa0074750:CDS 50.0%
TTGGCATCAAGCCACCTAAG+GGG + chr1_2:49655077-49655096 Msa0074750:CDS 50.0%
AGCAAGGTCTTTCCTGTTCC+AGG - chr1_2:49655121-49655140 None:intergenic 50.0%
ATCTCTGTGTTTGGGGGGAT+TGG + chr1_2:49655422-49655441 Msa0074750:intron 50.0%
TTGAGTTTGCCACAGCCTGA+AGG - chr1_2:49655780-49655799 None:intergenic 50.0%
TTGATGCGGTCGGTACAAAG+AGG + chr1_2:49655932-49655951 Msa0074750:CDS 50.0%
AGGTATGATGCTCACTCAGG+TGG + chr1_2:49656085-49656104 Msa0074750:intron 50.0%
TCTAAGGGAACGCCGAATGA+AGG + chr1_2:49656544-49656563 Msa0074750:CDS 50.0%
!! GAGTTGGGGTGGATTGGTTA+TGG + chr1_2:49656676-49656695 Msa0074750:intron 50.0%
TTGTTGGAACTGGGAAGAGG+TGG - chr1_2:49656885-49656904 None:intergenic 50.0%
!!! GGGGTTTTAAAGAGGCACCA+AGG - chr1_2:49657051-49657070 None:intergenic 50.0%
!!! GCAGGCTTGGGGTTTTAAAG+AGG - chr1_2:49657059-49657078 None:intergenic 50.0%
GATCATCATACTTTCCCGCG+AGG + chr1_2:49657092-49657111 Msa0074750:intron 50.0%
ACACTGGAATCCTCCCAGTT+GGG - chr1_2:49657123-49657142 None:intergenic 50.0%
TGACAGGATATCTGAGCCTG+AGG + chr1_2:49657187-49657206 Msa0074750:intron 50.0%
ACGATGGGTCAAGGAACTCC+CGG + chr1_2:49653070-49653089 Msa0074750:exon 55.0%
ATGAACCGACAAGGCCATCC+CGG + chr1_2:49653097-49653116 Msa0074750:CDS 55.0%
ATTCGAACCAGCAGCACCAC+CGG + chr1_2:49653159-49653178 Msa0074750:CDS 55.0%
TGTTTACGACCTACACGCGC+CGG - chr1_2:49653181-49653200 None:intergenic 55.0%
TTCGATACCGGAGTCACCGT+CGG - chr1_2:49653241-49653260 None:intergenic 55.0%
! CGGTATCGAAGTGCAAGCTG+AGG + chr1_2:49653251-49653270 Msa0074750:CDS 55.0%
AGAGAGGTTGAAGCCTCAGG+AGG + chr1_2:49653336-49653355 Msa0074750:CDS 55.0%
GTTGAAGCCTCAGGAGGAGA+AGG + chr1_2:49653342-49653361 Msa0074750:CDS 55.0%
!! GCCGATGAGTGTTGGGAATC+TGG + chr1_2:49653405-49653424 Msa0074750:CDS 55.0%
TGTTTCCAGTTCGGTTGGGC+CGG + chr1_2:49653456-49653475 Msa0074750:CDS 55.0%
GATGCAGCGCAACTGAAGTG+TGG + chr1_2:49654534-49654553 Msa0074750:intron 55.0%
AGCGCAACTGAAGTGTGGGA+CGG + chr1_2:49654539-49654558 Msa0074750:intron 55.0%
TGGCATCAAGCCACCTAAGG+GGG + chr1_2:49655078-49655097 Msa0074750:CDS 55.0%
GATCCAGCTTTGCTACGACC+TGG + chr1_2:49656217-49656236 Msa0074750:CDS 55.0%
GTTAGGGTTGTCTGTGGGTG+TGG + chr1_2:49656744-49656763 Msa0074750:intron 55.0%
TCATACTTTCCCGCGAGGGA+TGG + chr1_2:49657097-49657116 Msa0074750:intron 55.0%
GACACTGGAATCCTCCCAGT+TGG - chr1_2:49657124-49657143 None:intergenic 55.0%
ATGGGTCAAGGAACTCCCGG+CGG + chr1_2:49653073-49653092 Msa0074750:CDS 60.0%
CTTGTTTCCGGTCACCGGGA+TGG - chr1_2:49653114-49653133 None:intergenic 60.0%
!! CCGTCTTGTTTCCGGTCACC+GGG - chr1_2:49653118-49653137 None:intergenic 60.0%
CCCGGTGACCGGAAACAAGA+CGG + chr1_2:49653115-49653134 Msa0074750:CDS 60.0%
!! GCCGTCTTGTTTCCGGTCAC+CGG - chr1_2:49653119-49653138 None:intergenic 60.0%
GGTAACCGTGAAGCGGCATC+CGG - chr1_2:49653220-49653239 None:intergenic 60.0%
! TGCCGCTTCACGGTTACCGA+CGG + chr1_2:49653222-49653241 Msa0074750:CDS 60.0%
CACCGTCGGTAACCGTGAAG+CGG - chr1_2:49653227-49653246 None:intergenic 60.0%
ACGGTTACCGACGGTGACTC+CGG + chr1_2:49653231-49653250 Msa0074750:CDS 60.0%
GAAGCCTCAGGAGGAGAAGG+CGG + chr1_2:49653345-49653364 Msa0074750:CDS 60.0%
GTGGCTCGCCGATGAGTGTT+GGG + chr1_2:49653398-49653417 Msa0074750:CDS 60.0%
ATACTCCGGCCCAACCGAAC+TGG - chr1_2:49653464-49653483 None:intergenic 60.0%
GTGACTGGGAATGGGAGTCG+AGG + chr1_2:49654639-49654658 Msa0074750:intron 60.0%
GCTCTTGTGCCTTCAGGCTG+TGG + chr1_2:49655768-49655787 Msa0074750:intron 60.0%
CGACCAGGTCGTAGCAAAGC+TGG - chr1_2:49656223-49656242 None:intergenic 60.0%
! ATGCTAAGGGCGAGTTGGGG+TGG + chr1_2:49656665-49656684 Msa0074750:intron 60.0%
! AAGGGCGAGTTGGGGTGGAT+TGG + chr1_2:49656670-49656689 Msa0074750:intron 60.0%
!! CCTTGTCGGTTCATGCCGCC+GGG - chr1_2:49653091-49653110 None:intergenic 65.0%
!! GCCTTGTCGGTTCATGCCGC+CGG - chr1_2:49653092-49653111 None:intergenic 65.0%
!! GGTCACCGGGATGGCCTTGT+CGG - chr1_2:49653105-49653124 None:intergenic 65.0%
GACAAGGCCATCCCGGTGAC+CGG + chr1_2:49653104-49653123 Msa0074750:CDS 65.0%
TTACGACCTACACGCGCCGG+TGG - chr1_2:49653178-49653197 None:intergenic 65.0%
! AGGGTCCGGATGCCGCTTCA+CGG + chr1_2:49653212-49653231 Msa0074750:CDS 65.0%
TCCTCCGCCTTCTCCTCCTG+AGG - chr1_2:49653352-49653371 None:intergenic 65.0%
CGTGGCTCGCCGATGAGTGT+TGG + chr1_2:49653397-49653416 Msa0074750:CDS 65.0%
CCCGGCGGCATGAACCGACA+AGG + chr1_2:49653088-49653107 Msa0074750:CDS 70.0%
GCCTCAGGAGGAGAAGGCGG+AGG + chr1_2:49653348-49653367 Msa0074750:CDS 70.0%
CCAGTTGGGCCATCCCTCGC+GGG - chr1_2:49657109-49657128 None:intergenic 70.0%
CCCAGTTGGGCCATCCCTCG+CGG - chr1_2:49657110-49657129 None:intergenic 70.0%
CCGCGAGGGATGGCCCAACT+GGG + chr1_2:49657107-49657126 Msa0074750:intron 70.0%
CGAGGGATGGCCCAACTGGG+AGG + chr1_2:49657110-49657129 Msa0074750:intron 70.0%
!! ACACGCGCCGGTGGTGCTGC+TGG - chr1_2:49653169-49653188 None:intergenic 75.0%
GCAGCACCACCGGCGCGTGT+AGG + chr1_2:49653169-49653188 Msa0074750:CDS 75.0%
CCCGCGAGGGATGGCCCAAC+TGG + chr1_2:49657106-49657125 Msa0074750:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49652974 49657802 49652974 ID=Msa0074750;Name=Msa0074750
chr1_2 mRNA 49652974 49657802 49652974 ID=Msa0074750-mRNA-1;Parent=Msa0074750;Name=Msa0074750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|6|257|446
chr1_2 exon 49652974 49653555 49652974 ID=Msa0074750-mRNA-1:exon:15144;Parent=Msa0074750-mRNA-1
chr1_2 exon 49654902 49655147 49654902 ID=Msa0074750-mRNA-1:exon:15145;Parent=Msa0074750-mRNA-1
chr1_2 exon 49655784 49655953 49655784 ID=Msa0074750-mRNA-1:exon:15146;Parent=Msa0074750-mRNA-1
chr1_2 exon 49656087 49656303 49656087 ID=Msa0074750-mRNA-1:exon:15147;Parent=Msa0074750-mRNA-1
chr1_2 exon 49656425 49656565 49656425 ID=Msa0074750-mRNA-1:exon:15148;Parent=Msa0074750-mRNA-1
chr1_2 exon 49657462 49657802 49657462 ID=Msa0074750-mRNA-1:exon:15149;Parent=Msa0074750-mRNA-1
chr1_2 five_prime_UTR 49652974 49653072 49652974 ID=Msa0074750-mRNA-1:five_prime_utr;Parent=Msa0074750-mRNA-1
chr1_2 CDS 49653073 49653555 49653073 ID=Msa0074750-mRNA-1:cds;Parent=Msa0074750-mRNA-1
chr1_2 CDS 49654902 49655147 49654902 ID=Msa0074750-mRNA-1:cds;Parent=Msa0074750-mRNA-1
chr1_2 CDS 49655784 49655953 49655784 ID=Msa0074750-mRNA-1:cds;Parent=Msa0074750-mRNA-1
chr1_2 CDS 49656087 49656303 49656087 ID=Msa0074750-mRNA-1:cds;Parent=Msa0074750-mRNA-1
chr1_2 CDS 49656425 49656565 49656425 ID=Msa0074750-mRNA-1:cds;Parent=Msa0074750-mRNA-1
chr1_2 CDS 49657462 49657545 49657462 ID=Msa0074750-mRNA-1:cds;Parent=Msa0074750-mRNA-1
chr1_2 three_prime_UTR 49657546 49657802 49657546 ID=Msa0074750-mRNA-1:three_prime_utr;Parent=Msa0074750-mRNA-1
Gene Sequence

>Msa0074750

ATGGGTCAAGGAACTCCCGGCGGCATGAACCGACAAGGCCATCCCGGTGACCGGAAACAAGACGGCAGCGATAAAAAAGAAAAGAAATTCGAACCAGCAGCACCACCGGCGCGTGTAGGTCGTAAACAACGCAAACAAAAGGGTCCGGATGCCGCTTCACGGTTACCGACGGTGACTCCGGTATCGAAGTGCAAGCTGAGGCTGTTAAAGCTTGAGAGGGTGAAGGATTATTTGTTGATGGAGGAAGAGTTTGTTGCGTATCAAGAGAGGTTGAAGCCTCAGGAGGAGAAGGCGGAGGAAGATAGATCTAAGGTTGATGATCTACGTGGCTCGCCGATGAGTGTTGGGAATCTGGAGGAATTGATTGATGAGAATCATGCTATTGTTTCCAGTTCGGTTGGGCCGGAGTATTATGTTGGGATTTTATCTTTTGTTGATAAGGATCAATTGGAGCCTGGTTGTGCTATTTTGATGCATAATAAGGTTCTATCGGTTGTTGGTCTTCTGCAAGACGAAGTTGATCCAATGGTCTCAGTCATGAAAGTCGAGAAGGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCGCAGATTCAGGAAATTAAAGAGGCAGTTGAGCTACCCCTTACACATCCTGAACTATATGAAGATATTGGCATCAAGCCACCTAAGGGGGTCATATTATATGGAGAACCTGGAACAGGAAAGACCTTGCTTGCAAAGGCTGTGGCAAACTCAACATCAGCTACATTCTTGCGTGTAGTAGGTAGTGAATTGATACAAAAGTACTTGGGAGATGGTCCAAAACTTGTGAGGGAACTTTTCAGAGTTGCCGATGATCTTTCTCCTGCTATTGTTTTCATTGATGAAATTGATGCGGTCGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAAAGGACTATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTGGCTACCAACAGAATTGAAAGTCTTGATCCAGCTTTGCTACGACCTGGTCGTATTGATAGGAAGATTGAATTTCCTCTTCCTGATATCAAAACAAGAAGACGTATTTTCCAGATACACACATCAAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACGAAGGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTACTTGCTCTAAGGGAACGCCGAATGAAGGTGACTCATCCCGACTTTAAGAAGGCAAAGGATAAAGTGATGTTTAAGAAGAAAGAAGGAGTGCCAGAAGGACTATATATGTGA
Protein sequence

>Msa0074750

MGQGTPGGMNRQGHPGDRKQDGSDKKEKKFEPAAPPARVGRKQRKQKGPDAASRLPTVTPVSKCKLRLLKLERVKDYLLMEEEFVAYQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPAIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM*