AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101290 MtrunA17_Chr7g0253101 94.834 271 4 3 1 271 1 261 0.0 509
Msa1101290 MtrunA17_Chr6g0461591 62.044 274 74 10 1 261 1 257 1.38e-103 302
Msa1101290 MtrunA17_Chr3g0140331 38.800 250 96 8 15 260 121 317 7.30e-35 129
Msa1101290 MtrunA17_Chr1g0199671 76.471 68 16 0 193 260 239 306 5.26e-34 125
Msa1101290 MtrunA17_Chr4g0035891 71.795 78 19 1 196 270 211 288 1.75e-33 123
Msa1101290 MtrunA17_Chr2g0326771 57.944 107 39 2 172 272 191 297 1.77e-33 124
Msa1101290 MtrunA17_Chr5g0404981 41.176 238 100 9 45 269 163 373 2.66e-33 125
Msa1101290 MtrunA17_Chr8g0372291 77.465 71 16 0 196 266 218 288 3.53e-33 122
Msa1101290 MtrunA17_Chr1g0146231 35.985 264 114 9 11 260 76 298 9.05e-33 122
Msa1101290 MtrunA17_Chr8g0340401 37.118 229 78 7 45 260 115 290 3.41e-32 121
Msa1101290 MtrunA17_Chr1g0213161 75.758 66 16 0 196 261 152 217 6.46e-32 117
Msa1101290 MtrunA17_Chr1g0169431 74.648 71 18 0 190 260 166 236 6.66e-32 118
Msa1101290 MtrunA17_Chr4g0028961 72.222 72 20 0 193 264 229 300 8.83e-32 119
Msa1101290 MtrunA17_Chr3g0145121 70.833 72 21 0 196 267 215 286 1.55e-31 118
Msa1101290 MtrunA17_Chr5g0395391 73.846 65 17 0 196 260 270 334 3.20e-29 113
Msa1101290 MtrunA17_Chr5g0395391 71.875 64 18 0 196 259 168 231 1.44e-27 108
Msa1101290 MtrunA17_Chr7g0232671 58.065 62 26 0 196 257 187 248 6.13e-20 86.3
Msa1101290 MtrunA17_Chr7g0232701 56.923 65 28 0 193 257 70 134 7.71e-20 83.2
Msa1101290 MtrunA17_Chr7g0232681 40.000 105 63 0 153 257 89 193 2.92e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101290 AT4G32890.1 42.793 222 81 6 45 260 80 261 8.86e-44 151
Msa1101290 AT2G45050.1 38.618 246 98 8 21 266 57 249 7.96e-40 139
Msa1101290 AT5G66320.2 40.816 245 112 8 28 260 90 313 5.88e-36 131
Msa1101290 AT5G66320.1 40.816 245 112 8 28 260 90 313 5.88e-36 131
Msa1101290 AT5G25830.1 38.655 238 88 8 45 260 82 283 6.85e-36 131
Msa1101290 AT3G60530.1 40.553 217 57 9 45 260 77 222 1.11e-35 128
Msa1101290 AT3G24050.1 75.000 68 17 0 193 260 191 258 4.12e-33 122
Msa1101290 AT4G36240.1 37.788 217 74 5 45 261 74 229 5.52e-33 121
Msa1101290 AT3G54810.1 77.612 67 15 0 194 260 227 293 1.73e-32 122
Msa1101290 AT3G54810.2 77.612 67 15 0 194 260 227 293 1.73e-32 122
Msa1101290 AT3G51080.1 81.538 65 12 0 196 260 221 285 5.02e-32 120
Msa1101290 AT1G08010.2 72.308 65 18 0 196 260 220 284 3.69e-31 117
Msa1101290 AT1G08010.1 72.308 65 18 0 196 260 220 284 3.69e-31 117
Msa1101290 AT1G08010.3 72.308 65 18 0 196 260 220 284 3.69e-31 117
Msa1101290 AT1G08000.2 73.846 65 17 0 196 260 218 282 7.38e-30 114
Msa1101290 AT1G08000.1 73.846 65 17 0 196 260 218 282 7.38e-30 114
Msa1101290 AT4G34680.1 72.308 65 18 0 196 260 180 244 9.31e-30 113
Msa1101290 AT4G34680.2 72.308 65 18 0 196 260 180 244 9.31e-30 113
Msa1101290 AT2G28340.1 65.672 67 23 0 198 264 193 259 1.57e-26 105
Msa1101290 AT3G45170.1 56.579 76 33 0 185 260 104 179 5.54e-26 101

Find 69 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGTGAAATTGACTATT+TGG 0.123062 7_3:-31980066 Msa1101290:three_prime_UTR
CTCTCTTAAAACAAGCTTAT+TGG 0.124697 7_3:-31980527 Msa1101290:CDS
CACTAGAAACTTGTACATTT+TGG 0.144962 7_3:+31981251 None:intergenic
AACTTAGAGAGCACCAATTT+TGG 0.237029 7_3:-31981374 Msa1101290:five_prime_UTR
CATGCATTGCATAGTGTCTT+TGG 0.243410 7_3:+31980294 None:intergenic
TGAAAAGGATATTGTGAAAA+AGG 0.264098 7_3:-31980439 Msa1101290:CDS
CATAGTGTCTTTGGGCCTAA+TGG 0.278012 7_3:+31980303 None:intergenic
ACACTACTCACTAGGATTAA+TGG 0.294145 7_3:+31980137 None:intergenic
GGAAACATGAGATAGTATTT+AGG 0.308712 7_3:-31980045 Msa1101290:three_prime_UTR
ATGGGCCTGCCCTCCATTGT+GGG 0.318681 7_3:+31980322 None:intergenic
CAATGGAGGGCAGGCCCATT+AGG 0.322478 7_3:-31980318 Msa1101290:CDS
AAGATGCTTAAAGGGTCTTT+TGG 0.328925 7_3:+31980597 None:intergenic
GTTGTTAGTGCTATGATTAT+TGG 0.333550 7_3:-31980019 Msa1101290:three_prime_UTR
GTATTGGATAAGATGCTTAA+AGG 0.338824 7_3:+31980588 None:intergenic
ATAGTGTCTTTGGGCCTAAT+GGG 0.339035 7_3:+31980304 None:intergenic
CACACCAAGAGAGGGGAAAA+TGG 0.339492 7_3:+31981329 None:intergenic
GGTTTCTTCACTGTGTTTGA+AGG 0.343748 7_3:+31980702 None:intergenic
AGAGAAAAGAAAGCCAAAAT+TGG 0.351490 7_3:+31981361 None:intergenic
GTACACCTCCTTGTTGGAAT+TGG 0.356244 7_3:+31980366 None:intergenic
TATGAAAGTGAAATGCAATA+TGG 0.367111 7_3:+31979926 None:intergenic
ATGCATTGCATAGTGTCTTT+GGG 0.368727 7_3:+31980295 None:intergenic
AATGGGCCTGCCCTCCATTG+TGG 0.406749 7_3:+31980321 None:intergenic
AGAAAGAGACAAAATGAAAC+AGG 0.417263 7_3:+31979966 None:intergenic
TATTGGATAAGATGCTTAAA+GGG 0.429212 7_3:+31980589 None:intergenic
CAATGTGTACACCTCCTTGT+TGG 0.437336 7_3:+31980360 None:intergenic
AGATTATGAAGTGGTTGAAA+AGG 0.475929 7_3:-31980454 Msa1101290:CDS
GTAAAAGTACACAACTTTGT+GGG 0.484296 7_3:+31980766 None:intergenic
TAGTGAACTCATGGTACCTA+AGG 0.486078 7_3:-31980496 Msa1101290:CDS
GGTAAAAGTACACAACTTTG+TGG 0.499157 7_3:+31980765 None:intergenic
CAGGCAAAGCAAGAAGCAAA+AGG 0.500793 7_3:-31980644 Msa1101290:CDS
TAAAAGGTGAACTGAGACAA+GGG 0.508516 7_3:-31981406 None:intergenic
AGGACCCCACAATGGAGGGC+AGG 0.512119 7_3:-31980327 Msa1101290:CDS
ATTATGTAGGAAGTGGATGT+TGG 0.517271 7_3:-31980831 Msa1101290:intron
ATCCTAGTGAGTAGTGTTGG+TGG 0.530927 7_3:-31980131 Msa1101290:exon
TTGAAAGGTTAGAGCAAGAA+GGG 0.531774 7_3:+31981203 None:intergenic
CTTGAAAGGTTAGAGCAAGA+AGG 0.532182 7_3:+31981202 None:intergenic
ACAAAAGTTGGACTCTTAGC+AGG 0.532481 7_3:+31980228 None:intergenic
TAGTGAGTGCAAACAAGAGA+AGG 0.541293 7_3:-31981233 Msa1101290:CDS
GTTAGCTGATAGTGAACTCA+TGG 0.566356 7_3:-31980505 Msa1101290:CDS
TGGGCCTGCCCTCCATTGTG+GGG 0.567754 7_3:+31980323 None:intergenic
GGTCATCAAGGCTACTTGAA+AGG 0.569542 7_3:+31981188 None:intergenic
GAGCAGAAAAGAGGTCATCA+AGG 0.570986 7_3:+31981176 None:intergenic
CAAGAGAGGGGAAAATGGTA+AGG 0.576200 7_3:+31981334 None:intergenic
TGTGGTGTGAGGTACAAATC+TGG 0.576464 7_3:-31980273 Msa1101290:CDS
CTCTTAGCAGGTCTATACTC+TGG 0.579993 7_3:+31980240 None:intergenic
GTAGGAAGTGGATGTTGGAA+TGG 0.583317 7_3:-31980826 Msa1101290:intron
TTAATCCTAGTGAGTAGTGT+TGG 0.586069 7_3:-31980134 Msa1101290:exon
TTTGAGGTTGATGTTAACAA+TGG 0.593552 7_3:-31980396 Msa1101290:CDS
ACAAAGGACCCCACAATGGA+GGG 0.595325 7_3:-31980331 Msa1101290:CDS
TAATTTGAACACACCAAGAG+AGG 0.599833 7_3:+31981320 None:intergenic
CACAAAGGACCCCACAATGG+AGG 0.605327 7_3:-31980332 Msa1101290:CDS
ACAAGAAAGTCATGGAGATG+AGG 0.609025 7_3:-31980182 Msa1101290:CDS
AAATTCACACAAGAAAGTCA+TGG 0.613481 7_3:-31980190 Msa1101290:CDS
AATTTGAACACACCAAGAGA+GGG 0.616813 7_3:+31981321 None:intergenic
GGTAACAAAAGATTATGAAG+TGG 0.619135 7_3:-31980463 Msa1101290:CDS
ATATGGTATGCAACATGAGG+AGG 0.623003 7_3:+31979943 None:intergenic
AGTGAACTCATGGTACCTAA+GGG 0.625585 7_3:-31980495 Msa1101290:CDS
AAGTGGATGTTGGAATGGAA+TGG 0.634243 7_3:-31980821 Msa1101290:CDS
GCAATATGGTATGCAACATG+AGG 0.637604 7_3:+31979940 None:intergenic
AACCACCAACACTACTCACT+AGG 0.638539 7_3:+31980129 None:intergenic
GTCAAAATCCAATTCCAACA+AGG 0.638845 7_3:-31980374 Msa1101290:CDS
ATAAAAGGTGAACTGAGACA+AGG 0.649757 7_3:-31981407 None:intergenic
GTACACATTGTTTGTCACAA+AGG 0.655851 7_3:-31980347 Msa1101290:CDS
GTGTGAGGTACAAATCTGGT+AGG 0.664094 7_3:-31980269 Msa1101290:CDS
ATTTGAACACACCAAGAGAG+GGG 0.671203 7_3:+31981322 None:intergenic
TGTCACAAAGGACCCCACAA+TGG 0.681006 7_3:-31980335 Msa1101290:CDS
AAAATCCAATTCCAACAAGG+AGG 0.704851 7_3:-31980371 Msa1101290:CDS
TATGCAATGCATGTGGTGTG+AGG 0.734829 7_3:-31980284 Msa1101290:CDS
AAGACACTATGCAATGCATG+TGG 0.751831 7_3:-31980291 Msa1101290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGAAACATAATATTAA+AGG + chr7_3:31980381-31980400 None:intergenic 10.0%
!!! TAAATCAAAGTTTAAATTTT+AGG - chr7_3:31981232-31981251 Msa1101290:CDS 10.0%
!! AATTAGAAACATAATATTAA+AGG + chr7_3:31980381-31980400 None:intergenic 10.0%
!!! TAAATCAAAGTTTAAATTTT+AGG - chr7_3:31981232-31981251 Msa1101290:CDS 10.0%
!!! TATTATGTTTCTAATTTTCT+TGG - chr7_3:31980385-31980404 Msa1101290:CDS 15.0%
!!! TATTATGTTTCTAATTTTCT+TGG - chr7_3:31980385-31980404 Msa1101290:CDS 15.0%
!!! TGTAGTTTTTGCTAAAATTA+TGG - chr7_3:31980429-31980448 Msa1101290:CDS 20.0%
!!! TGTAGTTTTTGCTAAAATTA+TGG - chr7_3:31980429-31980448 Msa1101290:CDS 20.0%
! GAAAAACATATGTTAGAACA+AGG + chr7_3:31980294-31980313 None:intergenic 25.0%
! TTTGACCAAACAAATTATGT+AGG - chr7_3:31980471-31980490 Msa1101290:CDS 25.0%
! TATTGGATAAGATGCTTAAA+GGG + chr7_3:31980729-31980748 None:intergenic 25.0%
! TGAAAAGGATATTGTGAAAA+AGG - chr7_3:31980876-31980895 Msa1101290:intron 25.0%
! TTTAGGTGAAATTGACTATT+TGG - chr7_3:31981249-31981268 Msa1101290:CDS 25.0%
! TATGAAAGTGAAATGCAATA+TGG + chr7_3:31981392-31981411 None:intergenic 25.0%
! GAAAAACATATGTTAGAACA+AGG + chr7_3:31980294-31980313 None:intergenic 25.0%
! TTTGACCAAACAAATTATGT+AGG - chr7_3:31980471-31980490 Msa1101290:CDS 25.0%
! TATTGGATAAGATGCTTAAA+GGG + chr7_3:31980729-31980748 None:intergenic 25.0%
! TGAAAAGGATATTGTGAAAA+AGG - chr7_3:31980876-31980895 Msa1101290:intron 25.0%
! TTTAGGTGAAATTGACTATT+TGG - chr7_3:31981249-31981268 Msa1101290:CDS 25.0%
! TATGAAAGTGAAATGCAATA+TGG + chr7_3:31981392-31981411 None:intergenic 25.0%
AGAGAAAAGAAAGCCAAAAT+TGG + chr7_3:31979957-31979976 None:intergenic 30.0%
AAGGTGTAGAAAAAGTTAAG+GGG + chr7_3:31980027-31980046 None:intergenic 30.0%
CAAGGTGTAGAAAAAGTTAA+GGG + chr7_3:31980028-31980047 None:intergenic 30.0%
ACAAGGTGTAGAAAAAGTTA+AGG + chr7_3:31980029-31980048 None:intergenic 30.0%
! TTTTCTACACCTTGTCAAAA+TGG - chr7_3:31980034-31980053 Msa1101290:three_prime_UTR 30.0%
! CACTAGAAACTTGTACATTT+TGG + chr7_3:31980067-31980086 None:intergenic 30.0%
!! CACTTCCTACATAATTTGTT+TGG + chr7_3:31980479-31980498 None:intergenic 30.0%
CAAACAAATTATGTAGGAAG+TGG - chr7_3:31980477-31980496 Msa1101290:CDS 30.0%
! GTAAAAGTACACAACTTTGT+GGG + chr7_3:31980552-31980571 None:intergenic 30.0%
!! GTTGTGTTTTGAACATTAGA+GGG + chr7_3:31980574-31980593 None:intergenic 30.0%
!! TGTTGTGTTTTGAACATTAG+AGG + chr7_3:31980575-31980594 None:intergenic 30.0%
!! GACTCATTTTGTTCTTGTTT+TGG + chr7_3:31980637-31980656 None:intergenic 30.0%
GTATTGGATAAGATGCTTAA+AGG + chr7_3:31980730-31980749 None:intergenic 30.0%
!! ATTTTGAGGGTTTAAGGTAT+TGG + chr7_3:31980746-31980765 None:intergenic 30.0%
! AACATAGTGACTCATTTTGA+GGG + chr7_3:31980759-31980778 None:intergenic 30.0%
!!! CAATAAGCTTGTTTTAAGAG+AGG + chr7_3:31980790-31980809 None:intergenic 30.0%
CTCTCTTAAAACAAGCTTAT+TGG - chr7_3:31980788-31980807 Msa1101290:CDS 30.0%
GGTAACAAAAGATTATGAAG+TGG - chr7_3:31980852-31980871 Msa1101290:intron 30.0%
AGATTATGAAGTGGTTGAAA+AGG - chr7_3:31980861-31980880 Msa1101290:intron 30.0%
AGGATATTGTGAAAAAGGAA+AGG - chr7_3:31980881-31980900 Msa1101290:intron 30.0%
!! AAAGGAAAGGTTTGATTTTG+AGG - chr7_3:31980894-31980913 Msa1101290:intron 30.0%
!! AAGGAAAGGTTTGATTTTGA+GGG - chr7_3:31980895-31980914 Msa1101290:intron 30.0%
!! TTTGAGGTTGATGTTAACAA+TGG - chr7_3:31980919-31980938 Msa1101290:intron 30.0%
TGCAAAAAACTCACAAAAGT+TGG + chr7_3:31981102-31981121 None:intergenic 30.0%
AAATTCACACAAGAAAGTCA+TGG - chr7_3:31981125-31981144 Msa1101290:intron 30.0%
GGAAACATGAGATAGTATTT+AGG - chr7_3:31981270-31981289 Msa1101290:exon 30.0%
GTTGTTAGTGCTATGATTAT+TGG - chr7_3:31981296-31981315 Msa1101290:five_prime_UTR 30.0%
AGAAAGAGACAAAATGAAAC+AGG + chr7_3:31981352-31981371 None:intergenic 30.0%
AGAGAAAAGAAAGCCAAAAT+TGG + chr7_3:31979957-31979976 None:intergenic 30.0%
AAGGTGTAGAAAAAGTTAAG+GGG + chr7_3:31980027-31980046 None:intergenic 30.0%
CAAGGTGTAGAAAAAGTTAA+GGG + chr7_3:31980028-31980047 None:intergenic 30.0%
ACAAGGTGTAGAAAAAGTTA+AGG + chr7_3:31980029-31980048 None:intergenic 30.0%
! TTTTCTACACCTTGTCAAAA+TGG - chr7_3:31980034-31980053 Msa1101290:three_prime_UTR 30.0%
! CACTAGAAACTTGTACATTT+TGG + chr7_3:31980067-31980086 None:intergenic 30.0%
!! CACTTCCTACATAATTTGTT+TGG + chr7_3:31980479-31980498 None:intergenic 30.0%
CAAACAAATTATGTAGGAAG+TGG - chr7_3:31980477-31980496 Msa1101290:CDS 30.0%
! GTAAAAGTACACAACTTTGT+GGG + chr7_3:31980552-31980571 None:intergenic 30.0%
!! GTTGTGTTTTGAACATTAGA+GGG + chr7_3:31980574-31980593 None:intergenic 30.0%
!! TGTTGTGTTTTGAACATTAG+AGG + chr7_3:31980575-31980594 None:intergenic 30.0%
!! GACTCATTTTGTTCTTGTTT+TGG + chr7_3:31980637-31980656 None:intergenic 30.0%
GTATTGGATAAGATGCTTAA+AGG + chr7_3:31980730-31980749 None:intergenic 30.0%
!! ATTTTGAGGGTTTAAGGTAT+TGG + chr7_3:31980746-31980765 None:intergenic 30.0%
! AACATAGTGACTCATTTTGA+GGG + chr7_3:31980759-31980778 None:intergenic 30.0%
!!! CAATAAGCTTGTTTTAAGAG+AGG + chr7_3:31980790-31980809 None:intergenic 30.0%
CTCTCTTAAAACAAGCTTAT+TGG - chr7_3:31980788-31980807 Msa1101290:CDS 30.0%
GGTAACAAAAGATTATGAAG+TGG - chr7_3:31980852-31980871 Msa1101290:intron 30.0%
AGATTATGAAGTGGTTGAAA+AGG - chr7_3:31980861-31980880 Msa1101290:intron 30.0%
AGGATATTGTGAAAAAGGAA+AGG - chr7_3:31980881-31980900 Msa1101290:intron 30.0%
!! AAAGGAAAGGTTTGATTTTG+AGG - chr7_3:31980894-31980913 Msa1101290:intron 30.0%
!! AAGGAAAGGTTTGATTTTGA+GGG - chr7_3:31980895-31980914 Msa1101290:intron 30.0%
!! TTTGAGGTTGATGTTAACAA+TGG - chr7_3:31980919-31980938 Msa1101290:intron 30.0%
TGCAAAAAACTCACAAAAGT+TGG + chr7_3:31981102-31981121 None:intergenic 30.0%
AAATTCACACAAGAAAGTCA+TGG - chr7_3:31981125-31981144 Msa1101290:intron 30.0%
GGAAACATGAGATAGTATTT+AGG - chr7_3:31981270-31981289 Msa1101290:exon 30.0%
GTTGTTAGTGCTATGATTAT+TGG - chr7_3:31981296-31981315 Msa1101290:five_prime_UTR 30.0%
AGAAAGAGACAAAATGAAAC+AGG + chr7_3:31981352-31981371 None:intergenic 30.0%
!!! AACTTAGAGAGCACCAATTT+TGG - chr7_3:31979941-31979960 Msa1101290:three_prime_UTR 35.0%
AATTTGAACACACCAAGAGA+GGG + chr7_3:31979997-31980016 None:intergenic 35.0%
TAATTTGAACACACCAAGAG+AGG + chr7_3:31979998-31980017 None:intergenic 35.0%
AGGTGTAGAAAAAGTTAAGG+GGG + chr7_3:31980026-31980045 None:intergenic 35.0%
TTGAAAGGTTAGAGCAAGAA+GGG + chr7_3:31980115-31980134 None:intergenic 35.0%
CATAACTAGGAAGGACTTAT+AGG + chr7_3:31980270-31980289 None:intergenic 35.0%
GTTAGAACAAGGACATAACT+AGG + chr7_3:31980283-31980302 None:intergenic 35.0%
ATTATGTAGGAAGTGGATGT+TGG - chr7_3:31980484-31980503 Msa1101290:CDS 35.0%
! GGTAAAAGTACACAACTTTG+TGG + chr7_3:31980553-31980572 None:intergenic 35.0%
! AAGATGCTTAAAGGGTCTTT+TGG + chr7_3:31980721-31980740 None:intergenic 35.0%
!! TGACTCATTTTGAGGGTTTA+AGG + chr7_3:31980752-31980771 None:intergenic 35.0%
! GAACATAGTGACTCATTTTG+AGG + chr7_3:31980760-31980779 None:intergenic 35.0%
!!! AAGCTTGTTTTAAGAGAGGT+GGG + chr7_3:31980786-31980805 None:intergenic 35.0%
!!! TAAGCTTGTTTTAAGAGAGG+TGG + chr7_3:31980787-31980806 None:intergenic 35.0%
!! AGGAAAGGTTTGATTTTGAG+GGG - chr7_3:31980896-31980915 Msa1101290:intron 35.0%
GTCAAAATCCAATTCCAACA+AGG - chr7_3:31980941-31980960 Msa1101290:intron 35.0%
AAAATCCAATTCCAACAAGG+AGG - chr7_3:31980944-31980963 Msa1101290:intron 35.0%
GTACACATTGTTTGTCACAA+AGG - chr7_3:31980968-31980987 Msa1101290:intron 35.0%
ATGCATTGCATAGTGTCTTT+GGG + chr7_3:31981023-31981042 None:intergenic 35.0%
ACACTACTCACTAGGATTAA+TGG + chr7_3:31981181-31981200 None:intergenic 35.0%
TTAATCCTAGTGAGTAGTGT+TGG - chr7_3:31981181-31981200 Msa1101290:CDS 35.0%
!!! AACTTAGAGAGCACCAATTT+TGG - chr7_3:31979941-31979960 Msa1101290:three_prime_UTR 35.0%
AATTTGAACACACCAAGAGA+GGG + chr7_3:31979997-31980016 None:intergenic 35.0%
TAATTTGAACACACCAAGAG+AGG + chr7_3:31979998-31980017 None:intergenic 35.0%
AGGTGTAGAAAAAGTTAAGG+GGG + chr7_3:31980026-31980045 None:intergenic 35.0%
TTGAAAGGTTAGAGCAAGAA+GGG + chr7_3:31980115-31980134 None:intergenic 35.0%
CATAACTAGGAAGGACTTAT+AGG + chr7_3:31980270-31980289 None:intergenic 35.0%
GTTAGAACAAGGACATAACT+AGG + chr7_3:31980283-31980302 None:intergenic 35.0%
ATTATGTAGGAAGTGGATGT+TGG - chr7_3:31980484-31980503 Msa1101290:CDS 35.0%
! GGTAAAAGTACACAACTTTG+TGG + chr7_3:31980553-31980572 None:intergenic 35.0%
! AAGATGCTTAAAGGGTCTTT+TGG + chr7_3:31980721-31980740 None:intergenic 35.0%
!! TGACTCATTTTGAGGGTTTA+AGG + chr7_3:31980752-31980771 None:intergenic 35.0%
! GAACATAGTGACTCATTTTG+AGG + chr7_3:31980760-31980779 None:intergenic 35.0%
!!! AAGCTTGTTTTAAGAGAGGT+GGG + chr7_3:31980786-31980805 None:intergenic 35.0%
!!! TAAGCTTGTTTTAAGAGAGG+TGG + chr7_3:31980787-31980806 None:intergenic 35.0%
!! AGGAAAGGTTTGATTTTGAG+GGG - chr7_3:31980896-31980915 Msa1101290:intron 35.0%
GTCAAAATCCAATTCCAACA+AGG - chr7_3:31980941-31980960 Msa1101290:intron 35.0%
AAAATCCAATTCCAACAAGG+AGG - chr7_3:31980944-31980963 Msa1101290:intron 35.0%
GTACACATTGTTTGTCACAA+AGG - chr7_3:31980968-31980987 Msa1101290:intron 35.0%
ATGCATTGCATAGTGTCTTT+GGG + chr7_3:31981023-31981042 None:intergenic 35.0%
ACACTACTCACTAGGATTAA+TGG + chr7_3:31981181-31981200 None:intergenic 35.0%
TTAATCCTAGTGAGTAGTGT+TGG - chr7_3:31981181-31981200 Msa1101290:CDS 35.0%
ATTTGAACACACCAAGAGAG+GGG + chr7_3:31979996-31980015 None:intergenic 40.0%
GGTGTAGAAAAAGTTAAGGG+GGG + chr7_3:31980025-31980044 None:intergenic 40.0%
TAGTGAGTGCAAACAAGAGA+AGG - chr7_3:31980082-31980101 Msa1101290:three_prime_UTR 40.0%
CTTGAAAGGTTAGAGCAAGA+AGG + chr7_3:31980116-31980135 None:intergenic 40.0%
! CCTCTTTTCTGCTCAAAACA+CGG - chr7_3:31980148-31980167 Msa1101290:CDS 40.0%
GAACAAGGACATAACTAGGA+AGG + chr7_3:31980279-31980298 None:intergenic 40.0%
AAGTGGATGTTGGAATGGAA+TGG - chr7_3:31980494-31980513 Msa1101290:CDS 40.0%
GGTTTCTTCACTGTGTTTGA+AGG + chr7_3:31980616-31980635 None:intergenic 40.0%
!! AAAGGGTCTTTTGGTCTTCT+TGG + chr7_3:31980712-31980731 None:intergenic 40.0%
! GTTAGCTGATAGTGAACTCA+TGG - chr7_3:31980810-31980829 Msa1101290:CDS 40.0%
TAGTGAACTCATGGTACCTA+AGG - chr7_3:31980819-31980838 Msa1101290:CDS 40.0%
AGTGAACTCATGGTACCTAA+GGG - chr7_3:31980820-31980839 Msa1101290:CDS 40.0%
!! GTTACCTCTTTTTCACCCTT+AGG + chr7_3:31980838-31980857 None:intergenic 40.0%
!! GTTTGATTTTGAGGGGTTTG+AGG - chr7_3:31980903-31980922 Msa1101290:intron 40.0%
ATAGTGTCTTTGGGCCTAAT+GGG + chr7_3:31981014-31981033 None:intergenic 40.0%
CATGCATTGCATAGTGTCTT+TGG + chr7_3:31981024-31981043 None:intergenic 40.0%
AAGACACTATGCAATGCATG+TGG - chr7_3:31981024-31981043 Msa1101290:intron 40.0%
ACAAAAGTTGGACTCTTAGC+AGG + chr7_3:31981090-31981109 None:intergenic 40.0%
ACAAGAAAGTCATGGAGATG+AGG - chr7_3:31981133-31981152 Msa1101290:intron 40.0%
ATATGGTATGCAACATGAGG+AGG + chr7_3:31981375-31981394 None:intergenic 40.0%
GCAATATGGTATGCAACATG+AGG + chr7_3:31981378-31981397 None:intergenic 40.0%
ATTTGAACACACCAAGAGAG+GGG + chr7_3:31979996-31980015 None:intergenic 40.0%
GGTGTAGAAAAAGTTAAGGG+GGG + chr7_3:31980025-31980044 None:intergenic 40.0%
TAGTGAGTGCAAACAAGAGA+AGG - chr7_3:31980082-31980101 Msa1101290:three_prime_UTR 40.0%
CTTGAAAGGTTAGAGCAAGA+AGG + chr7_3:31980116-31980135 None:intergenic 40.0%
! CCTCTTTTCTGCTCAAAACA+CGG - chr7_3:31980148-31980167 Msa1101290:CDS 40.0%
GAACAAGGACATAACTAGGA+AGG + chr7_3:31980279-31980298 None:intergenic 40.0%
AAGTGGATGTTGGAATGGAA+TGG - chr7_3:31980494-31980513 Msa1101290:CDS 40.0%
GGTTTCTTCACTGTGTTTGA+AGG + chr7_3:31980616-31980635 None:intergenic 40.0%
!! AAAGGGTCTTTTGGTCTTCT+TGG + chr7_3:31980712-31980731 None:intergenic 40.0%
! GTTAGCTGATAGTGAACTCA+TGG - chr7_3:31980810-31980829 Msa1101290:CDS 40.0%
TAGTGAACTCATGGTACCTA+AGG - chr7_3:31980819-31980838 Msa1101290:CDS 40.0%
AGTGAACTCATGGTACCTAA+GGG - chr7_3:31980820-31980839 Msa1101290:CDS 40.0%
!! GTTACCTCTTTTTCACCCTT+AGG + chr7_3:31980838-31980857 None:intergenic 40.0%
!! GTTTGATTTTGAGGGGTTTG+AGG - chr7_3:31980903-31980922 Msa1101290:intron 40.0%
ATAGTGTCTTTGGGCCTAAT+GGG + chr7_3:31981014-31981033 None:intergenic 40.0%
CATGCATTGCATAGTGTCTT+TGG + chr7_3:31981024-31981043 None:intergenic 40.0%
AAGACACTATGCAATGCATG+TGG - chr7_3:31981024-31981043 Msa1101290:intron 40.0%
ACAAAAGTTGGACTCTTAGC+AGG + chr7_3:31981090-31981109 None:intergenic 40.0%
ACAAGAAAGTCATGGAGATG+AGG - chr7_3:31981133-31981152 Msa1101290:intron 40.0%
ATATGGTATGCAACATGAGG+AGG + chr7_3:31981375-31981394 None:intergenic 40.0%
GCAATATGGTATGCAACATG+AGG + chr7_3:31981378-31981397 None:intergenic 40.0%
CAAGAGAGGGGAAAATGGTA+AGG + chr7_3:31979984-31980003 None:intergenic 45.0%
! CTTACCATTTTCCCCTCTCT+TGG - chr7_3:31979982-31980001 Msa1101290:three_prime_UTR 45.0%
!! GGCACACATCCATTTTGACA+AGG + chr7_3:31980046-31980065 None:intergenic 45.0%
GGTCATCAAGGCTACTTGAA+AGG + chr7_3:31980130-31980149 None:intergenic 45.0%
GAGCAGAAAAGAGGTCATCA+AGG + chr7_3:31980142-31980161 None:intergenic 45.0%
!! CCGTGTTTTGAGCAGAAAAG+AGG + chr7_3:31980151-31980170 None:intergenic 45.0%
GTAGGAAGTGGATGTTGGAA+TGG - chr7_3:31980489-31980508 Msa1101290:CDS 45.0%
! GAGTCAACTTTTGCAGTTCC+AGG - chr7_3:31980652-31980671 Msa1101290:CDS 45.0%
! CTTTTGCTTCTTGCTTTGCC+TGG + chr7_3:31980673-31980692 None:intergenic 45.0%
CAGGCAAAGCAAGAAGCAAA+AGG - chr7_3:31980671-31980690 Msa1101290:CDS 45.0%
GGTACCTAAGGGTGAAAAAG+AGG - chr7_3:31980831-31980850 Msa1101290:intron 45.0%
GTACACCTCCTTGTTGGAAT+TGG + chr7_3:31980952-31980971 None:intergenic 45.0%
CAATGTGTACACCTCCTTGT+TGG + chr7_3:31980958-31980977 None:intergenic 45.0%
CATAGTGTCTTTGGGCCTAA+TGG + chr7_3:31981015-31981034 None:intergenic 45.0%
TATGCAATGCATGTGGTGTG+AGG - chr7_3:31981031-31981050 Msa1101290:intron 45.0%
TGTGGTGTGAGGTACAAATC+TGG - chr7_3:31981042-31981061 Msa1101290:intron 45.0%
GTGTGAGGTACAAATCTGGT+AGG - chr7_3:31981046-31981065 Msa1101290:intron 45.0%
CTCTTAGCAGGTCTATACTC+TGG + chr7_3:31981078-31981097 None:intergenic 45.0%
! ATCCTAGTGAGTAGTGTTGG+TGG - chr7_3:31981184-31981203 Msa1101290:CDS 45.0%
AACCACCAACACTACTCACT+AGG + chr7_3:31981189-31981208 None:intergenic 45.0%
CAAGAGAGGGGAAAATGGTA+AGG + chr7_3:31979984-31980003 None:intergenic 45.0%
! CTTACCATTTTCCCCTCTCT+TGG - chr7_3:31979982-31980001 Msa1101290:three_prime_UTR 45.0%
!! GGCACACATCCATTTTGACA+AGG + chr7_3:31980046-31980065 None:intergenic 45.0%
GGTCATCAAGGCTACTTGAA+AGG + chr7_3:31980130-31980149 None:intergenic 45.0%
GAGCAGAAAAGAGGTCATCA+AGG + chr7_3:31980142-31980161 None:intergenic 45.0%
!! CCGTGTTTTGAGCAGAAAAG+AGG + chr7_3:31980151-31980170 None:intergenic 45.0%
GTAGGAAGTGGATGTTGGAA+TGG - chr7_3:31980489-31980508 Msa1101290:CDS 45.0%
! GAGTCAACTTTTGCAGTTCC+AGG - chr7_3:31980652-31980671 Msa1101290:CDS 45.0%
! CTTTTGCTTCTTGCTTTGCC+TGG + chr7_3:31980673-31980692 None:intergenic 45.0%
CAGGCAAAGCAAGAAGCAAA+AGG - chr7_3:31980671-31980690 Msa1101290:CDS 45.0%
GGTACCTAAGGGTGAAAAAG+AGG - chr7_3:31980831-31980850 Msa1101290:intron 45.0%
GTACACCTCCTTGTTGGAAT+TGG + chr7_3:31980952-31980971 None:intergenic 45.0%
CAATGTGTACACCTCCTTGT+TGG + chr7_3:31980958-31980977 None:intergenic 45.0%
CATAGTGTCTTTGGGCCTAA+TGG + chr7_3:31981015-31981034 None:intergenic 45.0%
TATGCAATGCATGTGGTGTG+AGG - chr7_3:31981031-31981050 Msa1101290:intron 45.0%
TGTGGTGTGAGGTACAAATC+TGG - chr7_3:31981042-31981061 Msa1101290:intron 45.0%
GTGTGAGGTACAAATCTGGT+AGG - chr7_3:31981046-31981065 Msa1101290:intron 45.0%
CTCTTAGCAGGTCTATACTC+TGG + chr7_3:31981078-31981097 None:intergenic 45.0%
! ATCCTAGTGAGTAGTGTTGG+TGG - chr7_3:31981184-31981203 Msa1101290:CDS 45.0%
AACCACCAACACTACTCACT+AGG + chr7_3:31981189-31981208 None:intergenic 45.0%
CACACCAAGAGAGGGGAAAA+TGG + chr7_3:31979989-31980008 None:intergenic 50.0%
TGTCACAAAGGACCCCACAA+TGG - chr7_3:31980980-31980999 Msa1101290:intron 50.0%
ACAAAGGACCCCACAATGGA+GGG - chr7_3:31980984-31981003 Msa1101290:intron 50.0%
CACACCAAGAGAGGGGAAAA+TGG + chr7_3:31979989-31980008 None:intergenic 50.0%
TGTCACAAAGGACCCCACAA+TGG - chr7_3:31980980-31980999 Msa1101290:intron 50.0%
ACAAAGGACCCCACAATGGA+GGG - chr7_3:31980984-31981003 Msa1101290:intron 50.0%
CACAAAGGACCCCACAATGG+AGG - chr7_3:31980983-31981002 Msa1101290:intron 55.0%
CACAAAGGACCCCACAATGG+AGG - chr7_3:31980983-31981002 Msa1101290:intron 55.0%
ATGGGCCTGCCCTCCATTGT+GGG + chr7_3:31980996-31981015 None:intergenic 60.0%
AATGGGCCTGCCCTCCATTG+TGG + chr7_3:31980997-31981016 None:intergenic 60.0%
CAATGGAGGGCAGGCCCATT+AGG - chr7_3:31980997-31981016 Msa1101290:intron 60.0%
ATGGGCCTGCCCTCCATTGT+GGG + chr7_3:31980996-31981015 None:intergenic 60.0%
AATGGGCCTGCCCTCCATTG+TGG + chr7_3:31980997-31981016 None:intergenic 60.0%
CAATGGAGGGCAGGCCCATT+AGG - chr7_3:31980997-31981016 Msa1101290:intron 60.0%
AGGACCCCACAATGGAGGGC+AGG - chr7_3:31980988-31981007 Msa1101290:intron 65.0%
TGGGCCTGCCCTCCATTGTG+GGG + chr7_3:31980995-31981014 None:intergenic 65.0%
AGGACCCCACAATGGAGGGC+AGG - chr7_3:31980988-31981007 Msa1101290:intron 65.0%
TGGGCCTGCCCTCCATTGTG+GGG + chr7_3:31980995-31981014 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31979915 31981422 31979915 ID=Msa1101290;Name=Msa1101290
chr7_3 mRNA 31979915 31981422 31979915 ID=Msa1101290-mRNA-1;Parent=Msa1101290;Name=Msa1101290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|1|1|2|225|273
chr7_3 exon 31979915 31980844 31979915 ID=Msa1101290-mRNA-1:exon:6877;Parent=Msa1101290-mRNA-1
chr7_3 exon 31981168 31981422 31981168 ID=Msa1101290-mRNA-1:exon:6876;Parent=Msa1101290-mRNA-1
chr7_3 five_prime_UTR 31981285 31981422 31981285 ID=Msa1101290-mRNA-1:five_prime_utr;Parent=Msa1101290-mRNA-1
chr7_3 CDS 31981168 31981284 31981168 ID=Msa1101290-mRNA-1:cds;Parent=Msa1101290-mRNA-1
chr7_3 CDS 31980140 31980844 31980140 ID=Msa1101290-mRNA-1:cds;Parent=Msa1101290-mRNA-1
chr7_3 three_prime_UTR 31979915 31980139 31979915 ID=Msa1101290-mRNA-1:three_prime_utr;Parent=Msa1101290-mRNA-1
Gene Sequence

>Msa1101290

ATGGATGTGTGCCAAAATGTACAAGTTTCTAGTGAGTGCAAACAAGAGAAGGTTCTTAACCCTTCTTGCTCTAACCTTTCAAGTAGCCTTGATGACCTCTTTTCTGCTCAAAACACGGAAGTGGATGTTGGAATGGAATGGCTTTCAGTGTTTGTTGAAGACTGTTTTTCAAGCCCACAAAGTTGTGTACTTTTACCCTCTAATGTTCAAAACACAACAAGTACTGTCTCATCAAAACCTTCAAACACAGTGAAGAAACCAAAACAAGAACAAAATGAGTCAACTTTTGCAGTTCCAGGCAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCTCCAAGAAGACCAAAAGACCCTTTAAGCATCTTATCCAATACCTTAAACCCTCAAAATGAGTCACTATGTTCTGACCCACCTCTCTTAAAACAAGCTTATTGGTTAGCTGATAGTGAACTCATGGTACCTAAGGGTGAAAAAGAGGTAACAAAAGATTATGAAGTGGTTGAAAAGGATATTGTGAAAAAGGAAAGGTTTGATTTTGAGGGGTTTGAGGTTGATGTTAACAATGGTCAAAATCCAATTCCAACAAGGAGGTGTACACATTGTTTGTCACAAAGGACCCCACAATGGAGGGCAGGCCCATTAGGCCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGACCTGCTAAGAGTCCAACTTTTGTGAGTTTTTTGCATTCAAATTCACACAAGAAAGTCATGGAGATGAGGATGAATGTGAATGTTGTATCTTCCATTAATCCTAGTGAGTAG
Protein sequence

>Msa1101290

MDVCQNVQVSSECKQEKVLNPSCSNLSSSLDDLFSAQNTEVDVGMEWLSVFVEDCFSSPQSCVLLPSNVQNTTSTVSSKPSNTVKKPKQEQNESTFAVPGKARSKRKRLSAPRRPKDPLSILSNTLNPQNESLCSDPPLLKQAYWLADSELMVPKGEKEVTKDYEVVEKDIVKKERFDFEGFEVDVNNGQNPIPTRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSFLHSNSHKKVMEMRMNVNVVSSINPSE*