AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108630 MtrunA17_Chr7g0242461 99.216 255 2 0 1 255 1 255 0.0 525
Msa1108630 MtrunA17_Chr4g0006731 63.281 256 92 1 1 254 1 256 8.81e-125 355
Msa1108630 MtrunA17_Chr7g0242451 61.417 254 97 1 1 254 1 253 1.19e-117 337
Msa1108630 MtrunA17_Chr7g0242401 64.167 240 84 2 5 243 32 270 4.68e-112 323
Msa1108630 MtrunA17_Chr3g0113401 57.031 256 108 1 1 254 1 256 4.32e-110 317
Msa1108630 MtrunA17_Chr7g0242431 61.925 239 89 2 6 243 32 269 7.86e-104 302
Msa1108630 MtrunA17_Chr7g0242411 58.750 240 92 4 5 243 1 234 2.12e-96 282
Msa1108630 MtrunA17_Chr7g0242391 55.777 251 105 4 5 250 1 250 9.91e-95 278
Msa1108630 MtrunA17_Chr7g0242441 44.167 240 70 4 5 243 2 178 7.95e-59 185
Msa1108630 MtrunA17_Chr2g0283411 40.566 212 116 3 6 207 4 215 4.44e-53 172
Msa1108630 MtrunA17_Chr2g0283421 40.476 210 117 3 6 207 5 214 9.78e-51 166
Msa1108630 MtrunA17_Chr4g0059001 37.037 189 112 1 27 208 51 239 4.33e-33 121
Msa1108630 MtrunA17_Chr2g0283391 32.759 174 98 7 41 207 1 162 1.22e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108630 AT3G11210.1 62.500 256 94 1 1 254 1 256 1.27e-118 339
Msa1108630 AT2G38180.1 63.274 226 83 0 1 226 1 226 9.24e-107 311
Msa1108630 AT5G62930.1 42.489 233 119 3 5 230 1 225 2.86e-60 191
Msa1108630 AT5G62930.2 42.489 233 119 3 5 230 27 251 6.80e-60 191
Msa1108630 AT5G45920.1 43.333 210 112 3 5 207 2 211 2.77e-54 175
Msa1108630 AT5G45920.4 43.333 210 112 3 5 207 2 211 2.77e-54 175
Msa1108630 AT5G45920.2 43.646 181 95 3 5 178 2 182 1.13e-46 154
Msa1108630 AT5G45920.3 43.646 181 95 3 5 178 2 182 1.13e-46 154
Msa1108630 AT5G62930.3 37.870 169 90 3 69 230 7 167 1.22e-32 118

Find 88 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTACGTTGTTATCTTATT+TGG 0.199619 7_3:+51609895 None:intergenic
TAATCTCTGGTCTGCAATTC+AGG 0.207060 7_3:-51607961 Msa1108630:CDS
TAGTATTGAAGGAAATATTA+AGG 0.265182 7_3:-51607465 Msa1108630:CDS
ATCAAAACTCATCTGAATTA+TGG 0.265773 7_3:+51609822 None:intergenic
AGACCTCAAATCGTGCTATT+TGG 0.280414 7_3:-51609850 Msa1108630:CDS
TCTGCACTTGGAGGGTAATA+TGG 0.315910 7_3:+51607370 None:intergenic
GCTTCCAATCTGCTTCTCTA+AGG 0.341955 7_3:+51607440 None:intergenic
ATGGAATTCAAGACGTGCTT+TGG 0.369356 7_3:-51609109 Msa1108630:CDS
TGTTGCACTATGTATCATAT+TGG 0.380482 7_3:+51609948 None:intergenic
CTTGATTTGTACTTCACTGA+TGG 0.402939 7_3:+51608225 None:intergenic
AGCTAATTTGTATGCTAGAA+AGG 0.405931 7_3:-51609776 Msa1108630:intron
ATAGTATTGAGGGGATATTC+TGG 0.415164 7_3:-51609132 Msa1108630:CDS
GAGGAGAGGTGAGAAATATA+AGG 0.417441 7_3:+51608248 None:intergenic
ATTTGAAAGTTATTAATCTC+TGG 0.420460 7_3:-51607974 Msa1108630:CDS
TGCTTATGTCCAACCATCAT+TGG 0.435106 7_3:-51608602 Msa1108630:CDS
GAAAGAAAATTTCAATTATG+TGG 0.435591 7_3:-51607163 Msa1108630:three_prime_UTR
AGCACGATTTGAGGTCTCAT+TGG 0.440996 7_3:+51609856 None:intergenic
CCCTAGGAGGCATTTGCAAT+GGG 0.445483 7_3:-51607314 Msa1108630:CDS
TCATTGGTAATTATCTACTT+TGG 0.449738 7_3:-51608586 Msa1108630:CDS
TCCCATTGCAAATGCCTCCT+AGG 0.456278 7_3:+51607313 None:intergenic
AGTGACATCCAATGCAAACT+TGG 0.457673 7_3:+51607418 None:intergenic
ACGTGGCAAGGACTGTAAAC+TGG 0.457856 7_3:-51610029 Msa1108630:five_prime_UTR
GTGGTTCCATCTGCACTTGG+AGG 0.459823 7_3:+51607361 None:intergenic
TTGGTAATTATCTACTTTGG+CGG 0.476186 7_3:-51608583 Msa1108630:CDS
GTGAAAAGTAAGTCACAGAA+TGG 0.484547 7_3:-51607133 Msa1108630:three_prime_UTR
AGGAAGCAAGGTAGTATTGA+AGG 0.487351 7_3:-51607476 Msa1108630:CDS
ATTGGAAGCCAAGTTTGCAT+TGG 0.493472 7_3:-51607426 Msa1108630:CDS
GAATTCAAGACGTGCTTTGG+AGG 0.494234 7_3:-51609106 Msa1108630:CDS
GAGTCCAGTGCAACACAGAC+TGG 0.494319 7_3:-51608059 Msa1108630:intron
GGGTCCTTAGAGAAGCAGAT+TGG 0.495038 7_3:-51607444 Msa1108630:CDS
AGTATTGAAGGAAATATTAA+GGG 0.495090 7_3:-51607464 Msa1108630:CDS
AAGAATATAAAGAAAATATG+AGG 0.495267 7_3:-51608507 Msa1108630:CDS
GATACATAGTGCAACATCTC+AGG 0.495645 7_3:-51609941 Msa1108630:five_prime_UTR
AAGTAGATAATTACCAATGA+TGG 0.497782 7_3:+51608589 None:intergenic
TTGATTTGTACTTCACTGAT+GGG 0.500040 7_3:+51608226 None:intergenic
GGAATCACAATTTATAGATG+TGG 0.509177 7_3:+51609969 None:intergenic
GGACCAAGACCAGATGGGTG+GGG 0.511872 7_3:+51608544 None:intergenic
ATAGGCGGACATAGTATTGA+GGG 0.529124 7_3:-51609142 Msa1108630:intron
AGGAGTAGTGTTTGAGTGAG+AGG 0.529430 7_3:-51609921 Msa1108630:five_prime_UTR
GAGCCAAATAGCACGATTTG+AGG 0.529805 7_3:+51609847 None:intergenic
GAAGATTGCTAACTACCTAA+AGG 0.534339 7_3:-51608485 Msa1108630:intron
AGGACCAAGACCAGATGGGT+GGG 0.535530 7_3:+51608543 None:intergenic
TGAAAAGTAAGTCACAGAAT+GGG 0.537230 7_3:-51607132 Msa1108630:three_prime_UTR
GACCAAGACCAGATGGGTGG+GGG 0.542601 7_3:+51608545 None:intergenic
GGAGTTCATTTGTCAGCTGA+AGG 0.543643 7_3:-51607496 Msa1108630:CDS
CCCATTGCAAATGCCTCCTA+GGG 0.544514 7_3:+51607314 None:intergenic
GAATCTTCTGCATATTCAGT+TGG 0.544577 7_3:+51607394 None:intergenic
AACATTGTGGAATATATGCT+AGG 0.545833 7_3:-51608025 Msa1108630:CDS
TCCCTAGGAGGCATTTGCAA+TGG 0.552104 7_3:-51607315 Msa1108630:CDS
ACATGAGGACCAAGACCAGA+TGG 0.559879 7_3:+51608538 None:intergenic
AAAATCAAAACGCTCCTCAA+AGG 0.560195 7_3:+51607034 None:intergenic
ATGTTTCTTACAGTATCCCT+AGG 0.560400 7_3:-51607330 Msa1108630:CDS
TATAGGCGGACATAGTATTG+AGG 0.561827 7_3:-51609143 Msa1108630:intron
GTGGTGGTTCCATCTGCACT+TGG 0.562402 7_3:+51607358 None:intergenic
TATTACCCTCCAAGTGCAGA+TGG 0.563691 7_3:-51607367 Msa1108630:CDS
GTCTGCAATTCAGGAAAGAG+AGG 0.567714 7_3:-51607952 Msa1108630:CDS
TATTCTTCAATGGGAACATG+AGG 0.570082 7_3:+51608523 None:intergenic
GGAGTAGTGTTTGAGTGAGA+GGG 0.570999 7_3:-51609920 Msa1108630:five_prime_UTR
AGGACTGTAAACTGGCCCAA+GGG 0.574672 7_3:-51610021 Msa1108630:five_prime_UTR
AAGGACTGTAAACTGGCCCA+AGG 0.574785 7_3:-51610022 Msa1108630:five_prime_UTR
TGGTTCCATCTGCACTTGGA+GGG 0.575597 7_3:+51607362 None:intergenic
TACTTCACTGATGGGAGGAG+AGG 0.578122 7_3:+51608234 None:intergenic
GAGGACCAAGACCAGATGGG+TGG 0.585053 7_3:+51608542 None:intergenic
GTAAGAAACATTTATAGTGG+TGG 0.591121 7_3:+51607342 None:intergenic
TATTGAGGGGATATTCTGGA+TGG 0.591373 7_3:-51609128 Msa1108630:CDS
AGATAATTACCAATGATGGT+TGG 0.595168 7_3:+51608593 None:intergenic
GGCAAGCATATAACGTGGCA+AGG 0.597410 7_3:-51610041 Msa1108630:five_prime_UTR
AATATATGCTAGGGCACTGG+TGG 0.598632 7_3:-51608015 Msa1108630:CDS
ATTTGTACTTCACTGATGGG+AGG 0.605876 7_3:+51608229 None:intergenic
TTTGTCAGCTGAAGGAAGCA+AGG 0.608262 7_3:-51607488 Msa1108630:CDS
ACTGTAAGAAACATTTATAG+TGG 0.610031 7_3:+51607339 None:intergenic
ACGTAGTATAAAGACATGGC+AGG 0.611285 7_3:-51609880 Msa1108630:exon
TATTTGCATTATGTGTGGTG+TGG 0.617253 7_3:-51607269 Msa1108630:three_prime_UTR
ACATTGTGGAATATATGCTA+GGG 0.622516 7_3:-51608024 Msa1108630:CDS
CAATTCAGGAAAGAGAGGAC+TGG 0.624153 7_3:-51607947 Msa1108630:CDS
GAGAGGTGAGAAATATAAGG+CGG 0.629380 7_3:+51608251 None:intergenic
AAAACTCATCTGAATTATGG+AGG 0.630001 7_3:+51609825 None:intergenic
CATGAGGACCAAGACCAGAT+GGG 0.631173 7_3:+51608539 None:intergenic
TGGAATATATGCTAGGGCAC+TGG 0.636669 7_3:-51608018 Msa1108630:CDS
GGAAGAACAAATGAACATTG+TGG 0.639652 7_3:-51608038 Msa1108630:CDS
TTTCTTACAGTATCCCTAGG+AGG 0.647425 7_3:-51607327 Msa1108630:CDS
TCTGATATTTGCATTATGTG+TGG 0.656622 7_3:-51607274 Msa1108630:three_prime_UTR
GGACTGTAAACTGGCCCAAG+GGG 0.660504 7_3:-51610020 Msa1108630:five_prime_UTR
AAAGGATTAGTTCTTTCACG+TGG 0.671738 7_3:-51607077 Msa1108630:three_prime_UTR
TAGGCGGACATAGTATTGAG+GGG 0.695080 7_3:-51609141 Msa1108630:CDS
AACAACGTAGTATAAAGACA+TGG 0.720945 7_3:-51609884 Msa1108630:exon
ACGTAGGCAAGCATATAACG+TGG 0.760412 7_3:-51610046 None:intergenic
TAAGGCGGATATGATCCGAG+AGG 0.773737 7_3:+51608266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTGTAATTATTGA+TGG - chr7_3:51607774-51607793 Msa1108630:intron 10.0%
!! TAAAATATTGACATATATAT+AGG - chr7_3:51607821-51607840 Msa1108630:intron 10.0%
!! AAAAAAATTAAATATTCAAG+AGG + chr7_3:51608021-51608040 None:intergenic 10.0%
!!! TAAAAAAAAAAAGAGTTTTT+TGG + chr7_3:51608196-51608215 None:intergenic 10.0%
!!! TTATATTTTTTAATCAACTT+AGG - chr7_3:51608355-51608374 Msa1108630:intron 10.0%
!!! AAATATGATTCATAATTTTT+TGG - chr7_3:51608651-51608670 Msa1108630:intron 10.0%
!!! TTAATTTCTAACATTTTTTA+TGG - chr7_3:51608892-51608911 Msa1108630:intron 10.0%
!!! TTTGATTATTATTTTTTGTT+AGG - chr7_3:51609459-51609478 Msa1108630:intron 10.0%
!!! TTGATTATTATTTTTTGTTA+GGG - chr7_3:51609460-51609479 Msa1108630:intron 10.0%
!!! ATTTTTACTCTTTTAATAGT+TGG + chr7_3:51607546-51607565 None:intergenic 15.0%
!! AGTATAATATATGTAAGAAA+AGG - chr7_3:51607628-51607647 Msa1108630:intron 15.0%
!!! TTAACACATTAATTAGTTTT+AGG - chr7_3:51608134-51608153 Msa1108630:intron 15.0%
!!! TTTTCTTTATATTCTTCAAT+GGG + chr7_3:51608470-51608489 None:intergenic 15.0%
!!! ATTTTCTTTATATTCTTCAA+TGG + chr7_3:51608471-51608490 None:intergenic 15.0%
!! AAGAATATAAAGAAAATATG+AGG - chr7_3:51608474-51608493 Msa1108630:intron 15.0%
!!! TTAATTTGTATACACTATTA+AGG - chr7_3:51608582-51608601 Msa1108630:CDS 15.0%
!!! AATATTCCTTTTAATAATAG+TGG - chr7_3:51609083-51609102 Msa1108630:CDS 15.0%
!! GAAAAAGAAAAAAAAAACTT+TGG - chr7_3:51609761-51609780 Msa1108630:intron 15.0%
!!! ATGTATTTTGAAATAATGAA+AGG - chr7_3:51609886-51609905 Msa1108630:exon 15.0%
!! AATATATGCAAAAATGTACT+TGG + chr7_3:51607314-51607333 None:intergenic 20.0%
!!! GTATATTTTTTGAGTGTTTT+AGG - chr7_3:51607346-51607365 Msa1108630:CDS 20.0%
!! AATATTGACATATATATAGG+CGG - chr7_3:51607824-51607843 Msa1108630:intron 20.0%
!! CAATTATTGGAATATTGAAA+AGG + chr7_3:51607971-51607990 None:intergenic 20.0%
!! TGATTACTAATTACTCATTA+TGG - chr7_3:51608259-51608278 Msa1108630:CDS 20.0%
!! ATCACAAATGTATAATTACT+TGG - chr7_3:51608285-51608304 Msa1108630:intron 20.0%
!! AATATAACAACAAGACAAAA+TGG + chr7_3:51608342-51608361 None:intergenic 20.0%
!! GAAAATCATTATTTACCTTT+AGG + chr7_3:51608514-51608533 None:intergenic 20.0%
!! ATAAATCATAACTTATTGTG+TGG + chr7_3:51608536-51608555 None:intergenic 20.0%
!! ATTTGAAAGTTATTAATCTC+TGG - chr7_3:51609007-51609026 Msa1108630:intron 20.0%
!!! AAAGTACCACTATTATTAAA+AGG + chr7_3:51609092-51609111 None:intergenic 20.0%
!! AAATGTAGAAAAAGTAAAAG+TGG + chr7_3:51609129-51609148 None:intergenic 20.0%
!! AACAAGATTTAGAAATGTTA+AGG + chr7_3:51609171-51609190 None:intergenic 20.0%
!! TTTGTATAAACAAAAGTTGA+CGG + chr7_3:51609202-51609221 None:intergenic 20.0%
!! AGCAAAATAATTTATTTGTC+TGG + chr7_3:51609374-51609393 None:intergenic 20.0%
!!! TTATTATTTTTTGTTAGGGA+TGG - chr7_3:51609464-51609483 Msa1108630:intron 20.0%
!!! TAGTATTGAAGGAAATATTA+AGG - chr7_3:51609516-51609535 Msa1108630:intron 20.0%
!!! AGTATTGAAGGAAATATTAA+GGG - chr7_3:51609517-51609536 Msa1108630:intron 20.0%
!! GAAAGAAAATTTCAATTATG+TGG - chr7_3:51609818-51609837 Msa1108630:CDS 20.0%
! TACTACGTTGTTATCTTATT+TGG + chr7_3:51607089-51607108 None:intergenic 25.0%
! ATCAAAACTCATCTGAATTA+TGG + chr7_3:51607162-51607181 None:intergenic 25.0%
!!! ATTCAGATGAGTTTTGATAA+TGG - chr7_3:51607164-51607183 Msa1108630:three_prime_UTR 25.0%
!! TCCTACTCTATATCATTTTA+TGG - chr7_3:51607239-51607258 Msa1108630:three_prime_UTR 25.0%
! ACCATAAAATGATATAGAGT+AGG + chr7_3:51607243-51607262 None:intergenic 25.0%
! CCTCATCAATAATATATCTT+TGG + chr7_3:51607441-51607460 None:intergenic 25.0%
! CCAAAGATATATTATTGATG+AGG - chr7_3:51607438-51607457 Msa1108630:CDS 25.0%
!!! ACTAAGAGTTATTTTCTTGT+TGG - chr7_3:51607588-51607607 Msa1108630:intron 25.0%
! GTAAGAAAAGGAGAAATTTA+AGG - chr7_3:51607640-51607659 Msa1108630:intron 25.0%
! AGAATCTATTAGATACCTTA+GGG + chr7_3:51607917-51607936 None:intergenic 25.0%
! TAGAATCTATTAGATACCTT+AGG + chr7_3:51607918-51607937 None:intergenic 25.0%
! AGGTATCTAATAGATTCTAA+TGG - chr7_3:51607919-51607938 Msa1108630:intron 25.0%
!! TATCCTTTTGAATATTCCAT+TGG - chr7_3:51607942-51607961 Msa1108630:CDS 25.0%
!! ATCCTTTTGAATATTCCATT+GGG - chr7_3:51607943-51607962 Msa1108630:CDS 25.0%
! AATATTCAAGAGGATAACAA+TGG + chr7_3:51608011-51608030 None:intergenic 25.0%
! AAGTAGATAATTACCAATGA+TGG + chr7_3:51608395-51608414 None:intergenic 25.0%
!! TCATTGGTAATTATCTACTT+TGG - chr7_3:51608395-51608414 Msa1108630:intron 25.0%
! TACAAATCAAGAAAAAACTC+AGG - chr7_3:51608768-51608787 Msa1108630:intron 25.0%
!!! TTCTAACATTTTTTATGGCT+TGG - chr7_3:51608897-51608916 Msa1108630:intron 25.0%
! AATGTTAAGGAAATAACTGT+AGG + chr7_3:51609158-51609177 None:intergenic 25.0%
! TAATTTATTTGTCTGGTTGT+AGG + chr7_3:51609367-51609386 None:intergenic 25.0%
! ACTGTAAGAAACATTTATAG+TGG + chr7_3:51609645-51609664 None:intergenic 25.0%
GGAATCACAATTTATAGATG+TGG + chr7_3:51607015-51607034 None:intergenic 30.0%
TGTTGCACTATGTATCATAT+TGG + chr7_3:51607036-51607055 None:intergenic 30.0%
AACAACGTAGTATAAAGACA+TGG - chr7_3:51607097-51607116 Msa1108630:three_prime_UTR 30.0%
AAAACTCATCTGAATTATGG+AGG + chr7_3:51607159-51607178 None:intergenic 30.0%
! AGCTAATTTGTATGCTAGAA+AGG - chr7_3:51607205-51607224 Msa1108630:three_prime_UTR 30.0%
AGTAGGTAAGAATCAAAATC+TGG + chr7_3:51607465-51607484 None:intergenic 30.0%
CAATTCAGCTTCATTATACT+TGG + chr7_3:51607522-51607541 None:intergenic 30.0%
! ATAAGTCTTTGAGCACTTTT+CGG - chr7_3:51607705-51607724 Msa1108630:intron 30.0%
AACCCAATGGAATATTCAAA+AGG + chr7_3:51607948-51607967 None:intergenic 30.0%
AATATTGAAAAGGAACCCAA+TGG + chr7_3:51607961-51607980 None:intergenic 30.0%
CCAGCTAGCATTAATATTTA+TGG + chr7_3:51608048-51608067 None:intergenic 30.0%
CCATAAATATTAATGCTAGC+TGG - chr7_3:51608045-51608064 Msa1108630:CDS 30.0%
AGATAATTACCAATGATGGT+TGG + chr7_3:51608391-51608410 None:intergenic 30.0%
! TTGGTAATTATCTACTTTGG+CGG - chr7_3:51608398-51608417 Msa1108630:intron 30.0%
!! TTGATTTGTACTTCACTGAT+GGG + chr7_3:51608758-51608777 None:intergenic 30.0%
AACATTGTGGAATATATGCT+AGG - chr7_3:51608956-51608975 Msa1108630:intron 30.0%
ACATTGTGGAATATATGCTA+GGG - chr7_3:51608957-51608976 Msa1108630:intron 30.0%
GTAAGAAACATTTATAGTGG+TGG + chr7_3:51609642-51609661 None:intergenic 30.0%
TCTGATATTTGCATTATGTG+TGG - chr7_3:51609707-51609726 Msa1108630:intron 30.0%
TGAAAAGTAAGTCACAGAAT+GGG - chr7_3:51609849-51609868 Msa1108630:CDS 30.0%
! TTCCTTATCTTTTTCCTTTG+AGG - chr7_3:51609933-51609952 Msa1108630:five_prime_UTR 30.0%
!! TGATTATTTTTCTGCCCCTT+GGG + chr7_3:51606978-51606997 None:intergenic 35.0%
!! TTGATTATTTTTCTGCCCCT+TGG + chr7_3:51606979-51606998 None:intergenic 35.0%
!!! CAGATGAGTTTTGATAATGG+TGG - chr7_3:51607167-51607186 Msa1108630:three_prime_UTR 35.0%
!!! TGAGTTTTGATAATGGTGGT+TGG - chr7_3:51607171-51607190 Msa1108630:three_prime_UTR 35.0%
!!! GAGTTTTGATAATGGTGGTT+GGG - chr7_3:51607172-51607191 Msa1108630:three_prime_UTR 35.0%
!!! AGTTTTGATAATGGTGGTTG+GGG - chr7_3:51607173-51607192 Msa1108630:three_prime_UTR 35.0%
ATAGTGAAACTTATCCTCCA+AGG - chr7_3:51607388-51607407 Msa1108630:CDS 35.0%
GATACCATTGGATTATACCT+TGG + chr7_3:51607408-51607427 None:intergenic 35.0%
!!! GTTGGAGAATTTTTTGCAGT+AGG + chr7_3:51607482-51607501 None:intergenic 35.0%
! GTGATTAGTTAGTTAGAGGT+TGG + chr7_3:51607500-51607519 None:intergenic 35.0%
! CTTGGTGATTAGTTAGTTAG+AGG + chr7_3:51607504-51607523 None:intergenic 35.0%
! ATAGTATTGAGGGGATATTC+TGG - chr7_3:51607849-51607868 Msa1108630:intron 35.0%
! TCTTGATGAAGTTTTCCCTA+AGG - chr7_3:51607899-51607918 Msa1108630:intron 35.0%
GCAATGTCTACACATCTAAA+TGG - chr7_3:51608082-51608101 Msa1108630:intron 35.0%
TATTCTTCAATGGGAACATG+AGG + chr7_3:51608461-51608480 None:intergenic 35.0%
GAAGATTGCTAACTACCTAA+AGG - chr7_3:51608496-51608515 Msa1108630:CDS 35.0%
!! CTTGATTTGTACTTCACTGA+TGG + chr7_3:51608759-51608778 None:intergenic 35.0%
CAAGAAAAAACTCAGGTTCA+TGG - chr7_3:51608775-51608794 Msa1108630:intron 35.0%
GGAAGAACAAATGAACATTG+TGG - chr7_3:51608943-51608962 Msa1108630:intron 35.0%
ATCAACGAAGTTGAGTCTAA+CGG - chr7_3:51609329-51609348 Msa1108630:intron 35.0%
GAATCTTCTGCATATTCAGT+TGG + chr7_3:51609590-51609609 None:intergenic 35.0%
ATGTTTCTTACAGTATCCCT+AGG - chr7_3:51609651-51609670 Msa1108630:intron 35.0%
TATTTGCATTATGTGTGGTG+TGG - chr7_3:51609712-51609731 Msa1108630:intron 35.0%
!! CTGTGACTTACTTTTCACAA+GGG + chr7_3:51609846-51609865 None:intergenic 35.0%
!! TCTGTGACTTACTTTTCACA+AGG + chr7_3:51609847-51609866 None:intergenic 35.0%
GTGAAAAGTAAGTCACAGAA+TGG - chr7_3:51609848-51609867 Msa1108630:CDS 35.0%
!! AAAGGATTAGTTCTTTCACG+TGG - chr7_3:51609904-51609923 Msa1108630:five_prime_UTR 35.0%
CTCCTCAAAGGAAAAAGATA+AGG + chr7_3:51609938-51609957 None:intergenic 35.0%
AAAATCAAAACGCTCCTCAA+AGG + chr7_3:51609950-51609969 None:intergenic 35.0%
GATACATAGTGCAACATCTC+AGG - chr7_3:51607040-51607059 Msa1108630:three_prime_UTR 40.0%
ACGTAGTATAAAGACATGGC+AGG - chr7_3:51607101-51607120 Msa1108630:three_prime_UTR 40.0%
! AGACCTCAAATCGTGCTATT+TGG - chr7_3:51607131-51607150 Msa1108630:three_prime_UTR 40.0%
TCCTCCAAGGTATAATCCAA+TGG - chr7_3:51607401-51607420 Msa1108630:CDS 40.0%
ACCATTGGATTATACCTTGG+AGG + chr7_3:51607405-51607424 None:intergenic 40.0%
TATAGGCGGACATAGTATTG+AGG - chr7_3:51607838-51607857 Msa1108630:intron 40.0%
! ATAGGCGGACATAGTATTGA+GGG - chr7_3:51607839-51607858 Msa1108630:intron 40.0%
TATTGAGGGGATATTCTGGA+TGG - chr7_3:51607853-51607872 Msa1108630:intron 40.0%
ATGGAATTCAAGACGTGCTT+TGG - chr7_3:51607872-51607891 Msa1108630:intron 40.0%
TGCTTATGTCCAACCATCAT+TGG - chr7_3:51608379-51608398 Msa1108630:intron 40.0%
GAGAGGTGAGAAATATAAGG+CGG + chr7_3:51608733-51608752 None:intergenic 40.0%
GAGGAGAGGTGAGAAATATA+AGG + chr7_3:51608736-51608755 None:intergenic 40.0%
ATTTGTACTTCACTGATGGG+AGG + chr7_3:51608755-51608774 None:intergenic 40.0%
TAATCTCTGGTCTGCAATTC+AGG - chr7_3:51609020-51609039 Msa1108630:intron 40.0%
! AGGAAGCAAGGTAGTATTGA+AGG - chr7_3:51609505-51609524 Msa1108630:intron 40.0%
ATTGGAAGCCAAGTTTGCAT+TGG - chr7_3:51609555-51609574 Msa1108630:intron 40.0%
AGTGACATCCAATGCAAACT+TGG + chr7_3:51609566-51609585 None:intergenic 40.0%
TTTCTTACAGTATCCCTAGG+AGG - chr7_3:51609654-51609673 Msa1108630:intron 40.0%
AGGAGTAGTGTTTGAGTGAG+AGG - chr7_3:51607060-51607079 Msa1108630:three_prime_UTR 45.0%
GGAGTAGTGTTTGAGTGAGA+GGG - chr7_3:51607061-51607080 Msa1108630:three_prime_UTR 45.0%
! AGCACGATTTGAGGTCTCAT+TGG + chr7_3:51607128-51607147 None:intergenic 45.0%
GAGCCAAATAGCACGATTTG+AGG + chr7_3:51607137-51607156 None:intergenic 45.0%
GGCGTTTCAAACGATACCAT+TGG + chr7_3:51607420-51607439 None:intergenic 45.0%
! TAGGCGGACATAGTATTGAG+GGG - chr7_3:51607840-51607859 Msa1108630:intron 45.0%
GAATTCAAGACGTGCTTTGG+AGG - chr7_3:51607875-51607894 Msa1108630:intron 45.0%
! CAATGCTTTTCAGAGCCTCT+CGG - chr7_3:51608700-51608719 Msa1108630:intron 45.0%
TGGAATATATGCTAGGGCAC+TGG - chr7_3:51608963-51608982 Msa1108630:intron 45.0%
!! AATATATGCTAGGGCACTGG+TGG - chr7_3:51608966-51608985 Msa1108630:intron 45.0%
GTCTGCAATTCAGGAAAGAG+AGG - chr7_3:51609029-51609048 Msa1108630:intron 45.0%
CAATTCAGGAAAGAGAGGAC+TGG - chr7_3:51609034-51609053 Msa1108630:intron 45.0%
ATGCCACGTAGATGTGAGTT+GGG + chr7_3:51609245-51609264 None:intergenic 45.0%
AATGCCACGTAGATGTGAGT+TGG + chr7_3:51609246-51609265 None:intergenic 45.0%
ACGAAGTTGAGTCTAACGGA+AGG - chr7_3:51609333-51609352 Msa1108630:intron 45.0%
GGAGTTCATTTGTCAGCTGA+AGG - chr7_3:51609485-51609504 Msa1108630:intron 45.0%
TTTGTCAGCTGAAGGAAGCA+AGG - chr7_3:51609493-51609512 Msa1108630:intron 45.0%
GCTTCCAATCTGCTTCTCTA+AGG + chr7_3:51609544-51609563 None:intergenic 45.0%
TCTGCACTTGGAGGGTAATA+TGG + chr7_3:51609614-51609633 None:intergenic 45.0%
TATTACCCTCCAAGTGCAGA+TGG - chr7_3:51609614-51609633 Msa1108630:intron 45.0%
!! TTAAAATAAAAAACAATTAT+TGG + chr7_3:51607984-51608003 None:intergenic 5.0%
ACGTGGCAAGGACTGTAAAC+TGG - chr7_3:51606952-51606971 Msa1108630:three_prime_UTR 50.0%
AAGGACTGTAAACTGGCCCA+AGG - chr7_3:51606959-51606978 Msa1108630:three_prime_UTR 50.0%
AGGACTGTAAACTGGCCCAA+GGG - chr7_3:51606960-51606979 Msa1108630:three_prime_UTR 50.0%
CATGAGGACCAAGACCAGAT+GGG + chr7_3:51608445-51608464 None:intergenic 50.0%
ACATGAGGACCAAGACCAGA+TGG + chr7_3:51608446-51608465 None:intergenic 50.0%
TAAGGCGGATATGATCCGAG+AGG + chr7_3:51608718-51608737 None:intergenic 50.0%
TACTTCACTGATGGGAGGAG+AGG + chr7_3:51608750-51608769 None:intergenic 50.0%
TCTTCCAGTCTGTGTTGCAC+TGG + chr7_3:51608929-51608948 None:intergenic 50.0%
TGCCACGTAGATGTGAGTTG+GGG + chr7_3:51609244-51609263 None:intergenic 50.0%
GGGTCCTTAGAGAAGCAGAT+TGG - chr7_3:51609537-51609556 Msa1108630:intron 50.0%
TGGTTCCATCTGCACTTGGA+GGG + chr7_3:51609622-51609641 None:intergenic 50.0%
!! TCCCTAGGAGGCATTTGCAA+TGG - chr7_3:51609666-51609685 Msa1108630:intron 50.0%
CCCATTGCAAATGCCTCCTA+GGG + chr7_3:51609670-51609689 None:intergenic 50.0%
!! CCCTAGGAGGCATTTGCAAT+GGG - chr7_3:51609667-51609686 Msa1108630:intron 50.0%
TCCCATTGCAAATGCCTCCT+AGG + chr7_3:51609671-51609690 None:intergenic 50.0%
GGACTGTAAACTGGCCCAAG+GGG - chr7_3:51606961-51606980 Msa1108630:three_prime_UTR 55.0%
TCAATTCACCCCCACCCATC+TGG - chr7_3:51608428-51608447 Msa1108630:intron 55.0%
AGGACCAAGACCAGATGGGT+GGG + chr7_3:51608441-51608460 None:intergenic 55.0%
GAGTCCAGTGCAACACAGAC+TGG - chr7_3:51608922-51608941 Msa1108630:intron 55.0%
GACCCCAACTCACATCTACG+TGG - chr7_3:51609239-51609258 Msa1108630:intron 55.0%
GTGGTTCCATCTGCACTTGG+AGG + chr7_3:51609623-51609642 None:intergenic 55.0%
GTGGTGGTTCCATCTGCACT+TGG + chr7_3:51609626-51609645 None:intergenic 55.0%
GACCAAGACCAGATGGGTGG+GGG + chr7_3:51608439-51608458 None:intergenic 60.0%
GGACCAAGACCAGATGGGTG+GGG + chr7_3:51608440-51608459 None:intergenic 60.0%
GAGGACCAAGACCAGATGGG+TGG + chr7_3:51608442-51608461 None:intergenic 60.0%
CACCCCCACCCATCTGGTCT+TGG - chr7_3:51608434-51608453 Msa1108630:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 51606942 51610061 51606942 ID=Msa1108630;Name=Msa1108630
chr7_3 mRNA 51606942 51610061 51606942 ID=Msa1108630-mRNA-1;Parent=Msa1108630;Name=Msa1108630-mRNA-1;_AED=0.12;_eAED=0.12;_QI=174|1|1|1|1|1|6|364|255
chr7_3 exon 51606942 51607522 51606942 ID=Msa1108630-mRNA-1:exon:10701;Parent=Msa1108630-mRNA-1
chr7_3 exon 51607930 51608073 51607930 ID=Msa1108630-mRNA-1:exon:10700;Parent=Msa1108630-mRNA-1
chr7_3 exon 51608214 51608290 51608214 ID=Msa1108630-mRNA-1:exon:10699;Parent=Msa1108630-mRNA-1
chr7_3 exon 51608486 51608626 51608486 ID=Msa1108630-mRNA-1:exon:10698;Parent=Msa1108630-mRNA-1
chr7_3 exon 51609083 51609160 51609083 ID=Msa1108630-mRNA-1:exon:10697;Parent=Msa1108630-mRNA-1
chr7_3 exon 51609777 51610061 51609777 ID=Msa1108630-mRNA-1:exon:10696;Parent=Msa1108630-mRNA-1
chr7_3 five_prime_UTR 51609888 51610061 51609888 ID=Msa1108630-mRNA-1:five_prime_utr;Parent=Msa1108630-mRNA-1
chr7_3 CDS 51609777 51609887 51609777 ID=Msa1108630-mRNA-1:cds;Parent=Msa1108630-mRNA-1
chr7_3 CDS 51609083 51609160 51609083 ID=Msa1108630-mRNA-1:cds;Parent=Msa1108630-mRNA-1
chr7_3 CDS 51608486 51608626 51608486 ID=Msa1108630-mRNA-1:cds;Parent=Msa1108630-mRNA-1
chr7_3 CDS 51608214 51608290 51608214 ID=Msa1108630-mRNA-1:cds;Parent=Msa1108630-mRNA-1
chr7_3 CDS 51607930 51608073 51607930 ID=Msa1108630-mRNA-1:cds;Parent=Msa1108630-mRNA-1
chr7_3 CDS 51607306 51607522 51607306 ID=Msa1108630-mRNA-1:cds;Parent=Msa1108630-mRNA-1
chr7_3 three_prime_UTR 51606942 51607305 51606942 ID=Msa1108630-mRNA-1:three_prime_utr;Parent=Msa1108630-mRNA-1
Gene Sequence

>Msa1108630

ATGGCAGGACCAATGAGACCTCAAATCGTGCTATTTGGCTCCTCCATAATTCAGATGAGTTTTGATAATGGTGGTTGGGGTGCTATTCTAGCTAATTTGTATGCTAGAAAGGCGGACATAGTATTGAGGGGATATTCTGGATGGAATTCAAGACGTGCTTTGGAGGTTCTTGATGAAGTTTTCCCTAAGGATGCTTATGTCCAACCATCATTGGTAATTATCTACTTTGGCGGAAATGATTCAATTCACCCCCACCCATCTGGTCTTGGTCCTCATGTTCCCATTGAAGAATATAAAGAAAATATGAGGAAGATTGCTAACTACCTAAAGAGCCTCTCGGATCATATCCGCCTTATATTTCTCACCTCTCCTCCCATCAGTGAAGTACAAATCAAGAAAAAACTCAGTGCAACACAGACTGGAAGAACAAATGAACATTGTGGAATATATGCTAGGGCACTGGTGGAACTATGTGATGAGATGAATTTGAAAGTTATTAATCTCTGGTCTGCAATTCAGGAAAGAGAGGACTGGTTAGATGTCAGCTTTACGGATGGAGTTCATTTGTCAGCTGAAGGAAGCAAGGTAGTATTGAAGGAAATATTAAGGGTCCTTAGAGAAGCAGATTGGAAGCCAAGTTTGCATTGGATGTCACTACCAACTGAATATGCAGAAGATTCACCATATTACCCTCCAAGTGCAGATGGAACCACCACTATAAATGTTTCTTACAGTATCCCTAGGAGGCATTTGCAATGGGATTTATAA
Protein sequence

>Msa1108630

MAGPMRPQIVLFGSSIIQMSFDNGGWGAILANLYARKADIVLRGYSGWNSRRALEVLDEVFPKDAYVQPSLVIIYFGGNDSIHPHPSGLGPHVPIEEYKENMRKIANYLKSLSDHIRLIFLTSPPISEVQIKKKLSATQTGRTNEHCGIYARALVELCDEMNLKVINLWSAIQEREDWLDVSFTDGVHLSAEGSKVVLKEILRVLREADWKPSLHWMSLPTEYAEDSPYYPPSADGTTTINVSYSIPRRHLQWDL*