AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025060 MtrunA17_Chr1g0179621 94.828 464 12 1 1 452 1 464 0.0 871
Msa0025060 MtrunA17_Chr7g0265481 71.398 465 116 4 1 452 1 461 0.0 587
Msa0025060 MtrunA17_Chr3g0139541 49.312 436 194 7 31 451 44 467 6.66e-120 358
Msa0025060 MtrunA17_Chr8g0373471 46.207 435 213 4 29 450 39 465 3.73e-112 338
Msa0025060 MtrunA17_Chr5g0403901 49.639 415 185 4 49 451 67 469 1.04e-105 322
Msa0025060 MtrunA17_Chr8g0380211 45.673 416 197 4 55 451 71 476 1.73e-94 293
Msa0025060 MtrunA17_Chr1g0157751 41.706 422 216 6 49 450 44 455 8.29e-92 285
Msa0025060 MtrunA17_Chr8g0380191 43.503 354 153 4 98 451 9 315 3.21e-77 243
Msa0025060 MtrunA17_Chr2g0280401 30.353 425 244 11 57 446 55 462 1.52e-34 134
Msa0025060 MtrunA17_Chr3g0139621 51.163 86 20 1 318 381 60 145 3.41e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025060 AT2G36630.1 67.896 461 124 5 5 452 9 458 0.0 550
Msa0025060 AT2G25737.1 50.711 422 174 6 50 451 66 473 6.27e-119 356
Msa0025060 AT2G25737.2 49.062 320 129 6 50 349 66 371 1.74e-75 241
Msa0025060 AT1G11540.1 28.134 359 233 7 99 446 19 363 2.96e-32 126
Msa0025060 AT1G11540.2 27.212 452 292 8 18 446 9 446 8.14e-32 127
Msa0025060 AT4G21250.1 30.273 403 228 8 57 430 51 429 2.29e-28 117
Msa0025060 AT1G61740.1 25.442 452 283 12 30 446 22 454 2.28e-27 114
Msa0025060 AT4G21260.1 27.338 417 236 12 24 430 14 373 1.38e-22 99.8

Find 111 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGGAGGTGGATTTATTT+TGG 0.132041 1_1:-48072735 Msa0025060:CDS
CCTATGCTTAATCTTCTTCT+TGG 0.184547 1_1:-48074569 Msa0025060:intron
AGAAAATTGGTTGCATTTCT+TGG 0.253892 1_1:-48071913 Msa0025060:CDS
CCATGAGTTCATGGGATTCT+TGG 0.257074 1_1:-48071693 Msa0025060:CDS
GCTACTTTGGTTAATTCTAA+TGG 0.257433 1_1:-48073626 Msa0025060:CDS
ACAGTTCTTTGTTAGAAAAT+TGG 0.258155 1_1:-48071926 Msa0025060:CDS
GTTCTGGAACAGATAGAATT+TGG 0.259719 1_1:-48074794 Msa0025060:CDS
ATGCCTCACATATGTATTCT+AGG 0.262467 1_1:+48072837 None:intergenic
TTACCTTGATGATTTGAATA+AGG 0.268202 1_1:+48073282 None:intergenic
GTTGGAGGCTTACTTGGTTC+TGG 0.271593 1_1:-48072752 Msa0025060:CDS
TTCTCTGTTTCAACCTTAGA+TGG 0.285945 1_1:-48073346 Msa0025060:CDS
AACTCTAACCGCTATGGTTC+TGG 0.287378 1_1:-48074810 Msa0025060:CDS
TTGGGTGCTCTTCGGCTTGC+AGG 0.288226 1_1:-48073143 Msa0025060:intron
CTAAAATCCTCTTCCATCTA+AGG 0.311247 1_1:+48073333 None:intergenic
GGGCCTCTTCTCCTTGAGAT+AGG 0.312567 1_1:-48072713 Msa0025060:CDS
AGGACAGTGATAAGCCAAAA+AGG 0.314523 1_1:+48073979 None:intergenic
CCTCATCACAGTGTCTGTTT+TGG 0.316799 1_1:-48071962 Msa0025060:CDS
ATTTAGTTGGAAACTTGTTT+TGG 0.323990 1_1:-48074663 Msa0025060:CDS
CATGAGTTCATGGGATTCTT+GGG 0.327579 1_1:-48071692 Msa0025060:CDS
CTCATTATCATTCTCTTCAT+AGG 0.331159 1_1:-48073958 Msa0025060:intron
GCCAAATCATAGTCTAATAT+TGG 0.339930 1_1:+48074066 None:intergenic
GCCAATATTAGACTATGATT+TGG 0.343903 1_1:-48074067 Msa0025060:CDS
GGCTTACTTGGTTCTGGAGG+TGG 0.346407 1_1:-48072746 Msa0025060:CDS
TGCAGGAATTGGAATTTAGT+TGG 0.363273 1_1:-48074676 Msa0025060:intron
GGAATTGTTGGAGGCTTACT+TGG 0.374041 1_1:-48072758 Msa0025060:CDS
TTTGTGCAGGAACTTCTTTA+AGG 0.376797 1_1:-48073844 Msa0025060:intron
AAGAGGTTCCCTATGCCTTA+TGG 0.397338 1_1:-48072101 Msa0025060:intron
TAATTAATTTAGAGTAAAGT+AGG 0.398409 1_1:-48071656 Msa0025060:three_prime_UTR
GAAAATTGGTTGCATTTCTT+GGG 0.399959 1_1:-48071912 Msa0025060:CDS
AACTGCTAAGCAAGCTACTT+TGG 0.413957 1_1:-48073639 Msa0025060:CDS
TAGCATTGTTACTAATTACT+TGG 0.416147 1_1:+48071430 None:intergenic
AGGCCTGCAGTGTATGGTAT+TGG 0.427218 1_1:-48073162 Msa0025060:CDS
TTATATCTACCTAGCTACTT+GGG 0.428075 1_1:-48071464 Msa0025060:three_prime_UTR
TAAAGAAAAGAAGTCAACTA+TGG 0.432207 1_1:-48073455 Msa0025060:intron
GTCATTGTATTCATCCTCTC+TGG 0.433319 1_1:-48071880 Msa0025060:CDS
GATACACAACCATGAGTTCA+TGG 0.435806 1_1:-48071702 Msa0025060:CDS
TTTATATCTACCTAGCTACT+TGG 0.440934 1_1:-48071465 Msa0025060:three_prime_UTR
TGTGCAATGAGTGGTATTGT+AGG 0.441307 1_1:-48072782 Msa0025060:CDS
GTATGGTATTGGGTGCTCTT+CGG 0.446576 1_1:-48073151 Msa0025060:CDS
ACCGTTGGTGGTGTTGGTGG+CGG 0.454116 1_1:-48074605 Msa0025060:CDS
GGGCATCAGCATCATCAGTT+TGG 0.457173 1_1:-48074125 Msa0025060:CDS
GTTGGTGGTGTTGGTGGCGG+TGG 0.457498 1_1:-48074602 Msa0025060:CDS
CCTCCTTATTCAAATCATCA+AGG 0.464837 1_1:-48073285 Msa0025060:intron
GTTTCAACCTTAGATGGAAG+AGG 0.471805 1_1:-48073340 Msa0025060:CDS
AGCAAACAAAAGGAAAATCA+AGG 0.475919 1_1:-48071630 Msa0025060:three_prime_UTR
CGCAGAGAGAGTAGCAAGAC+AGG 0.482761 1_1:+48074890 None:intergenic
CACAGAATGAGGATGGGCAC+AGG 0.484366 1_1:-48072863 Msa0025060:CDS
GGCCTGCAGTGTATGGTATT+GGG 0.487342 1_1:-48073161 Msa0025060:CDS
GGTATTGTAGGTGGAATTGT+TGG 0.495520 1_1:-48072770 Msa0025060:CDS
GTGTTTGGTTTATGCAGTGA+TGG 0.503575 1_1:+48075011 None:intergenic
TTTCAGCCAATGCTTATGCT+AGG 0.504558 1_1:-48074036 Msa0025060:CDS
AAGTAGGAATAGCAAACAAA+AGG 0.505433 1_1:-48071640 Msa0025060:three_prime_UTR
AATCAAGGGTTCATAGATGT+TGG 0.512920 1_1:-48071615 Msa0025060:three_prime_UTR
GGAACCGTTGGTGGTGTTGG+TGG 0.513209 1_1:-48074608 Msa0025060:CDS
TTTGCCAGTGCTCTCACCAT+GGG 0.516548 1_1:-48071850 Msa0025060:intron
ATTGTAGGTGGAATTGTTGG+AGG 0.521718 1_1:-48072767 Msa0025060:CDS
ATAAACTATGAAGTTTCTTG+TGG 0.522842 1_1:+48074926 None:intergenic
TGTGGAACCGTTGGTGGTGT+TGG 0.524570 1_1:-48074611 Msa0025060:CDS
CTTATCTGTGAAAATAATTG+TGG 0.525111 1_1:-48071398 Msa0025060:three_prime_UTR
TCTTTAAGGTCATTCTTCAA+AGG 0.527965 1_1:-48073830 Msa0025060:CDS
CACTCATTGCACAAAATGCA+AGG 0.529460 1_1:+48072792 None:intergenic
TCAAAGGAATTGAAATGTGG+AGG 0.529502 1_1:-48073814 Msa0025060:CDS
CAAAGATCACAGAATGAGGA+TGG 0.531696 1_1:-48072870 Msa0025060:CDS
TATGTGAGGCATCAATAGAA+TGG 0.532905 1_1:-48072826 Msa0025060:CDS
ATGTAGAGGCCTGCAGTGTA+TGG 0.533143 1_1:-48073168 Msa0025060:CDS
TGAGATAGGTGTCATCCCTC+AGG 0.534173 1_1:-48072699 Msa0025060:intron
ACCGCCACCAACACCACCAA+CGG 0.534339 1_1:+48074604 None:intergenic
CATTGAATATCTATATCTCT+AGG 0.535504 1_1:-48071574 Msa0025060:three_prime_UTR
TCTAATGGAGAATTTAAAGC+AGG 0.535837 1_1:-48073611 Msa0025060:intron
CCTTGATGATTTGAATAAGG+AGG 0.539252 1_1:+48073285 None:intergenic
GTAGCAATCAAAATCAAAAG+AGG 0.541239 1_1:+48075066 None:intergenic
TTGAATTCTACATTCTCAAG+AGG 0.545752 1_1:-48072118 Msa0025060:CDS
TGAAGATTACCATAAGGCAT+AGG 0.546602 1_1:+48072092 None:intergenic
CCAAGAATCCCATGAACTCA+TGG 0.548829 1_1:+48071693 None:intergenic
ATAAAGTGCCCCAAGTAGCT+AGG 0.548972 1_1:+48071455 None:intergenic
ATTACCCATGGTGAGAGCAC+TGG 0.549613 1_1:+48071846 None:intergenic
AATTGGTTGCATTTCTTGGG+AGG 0.551100 1_1:-48071909 Msa0025060:CDS
GGAGGCTTACTTGGTTCTGG+AGG 0.552125 1_1:-48072749 Msa0025060:CDS
GAAGATTACCATAAGGCATA+GGG 0.560541 1_1:+48072093 None:intergenic
GAGATATAGATATTCAATGT+TGG 0.560753 1_1:+48071578 None:intergenic
TGGCTATTTATTTGTTGCAG+AGG 0.563811 1_1:+48075031 None:intergenic
GGATCAGCATGTGGAACCGT+TGG 0.569477 1_1:-48074620 Msa0025060:CDS
CAAAGGAATTGAAATGTGGA+GGG 0.569796 1_1:-48073813 Msa0025060:CDS
ATTGGTTGCATTTCTTGGGA+GGG 0.570696 1_1:-48071908 Msa0025060:CDS
GTAATTCCTAGCATAAGCAT+TGG 0.571681 1_1:+48074030 None:intergenic
TCATCAAACTCTAACCGCTA+TGG 0.575293 1_1:-48074816 Msa0025060:CDS
TATATCTACCTAGCTACTTG+GGG 0.575639 1_1:-48071463 Msa0025060:three_prime_UTR
CTATGAAGAGAATGATAATG+AGG 0.579843 1_1:+48073959 None:intergenic
TGTACAAAGATCACAGAATG+AGG 0.585072 1_1:-48072874 Msa0025060:CDS
GTTTCTTGTGGACATTGTCA+TGG 0.585343 1_1:+48074938 None:intergenic
GTTTGATGATGATGATAACA+AGG 0.587310 1_1:+48074830 None:intergenic
TCAGCATGTGGAACCGTTGG+TGG 0.590204 1_1:-48074617 Msa0025060:CDS
TGGTTTGCAGACTGATGTAG+AGG 0.594763 1_1:-48073182 Msa0025060:intron
GATGATAACAAGGAGAATGA+TGG 0.600061 1_1:+48074840 None:intergenic
TCTTCAAAGGAATTGAAATG+TGG 0.607269 1_1:-48073817 Msa0025060:CDS
GAGGGTTGAGACTCTTCTCA+AGG 0.609115 1_1:-48073795 Msa0025060:intron
GCAAACAAAAGGAAAATCAA+GGG 0.610916 1_1:-48071629 Msa0025060:three_prime_UTR
ACACCTATCTCAAGGAGAAG+AGG 0.611353 1_1:+48072710 None:intergenic
CCAAGAAGAAGATTAAGCAT+AGG 0.611625 1_1:+48074569 None:intergenic
ATACACAACCATGAGTTCAT+GGG 0.614070 1_1:-48071701 Msa0025060:CDS
CACCCAATACCATACACTGC+AGG 0.618863 1_1:+48073159 None:intergenic
ACAGAATGAGGATGGGCACA+GGG 0.625351 1_1:-48072862 Msa0025060:CDS
AGTTTGGTATAATTTGAGAG+TGG 0.626700 1_1:-48074109 Msa0025060:CDS
GAGGGATGACACCTATCTCA+AGG 0.628407 1_1:+48072702 None:intergenic
ACTCATTGCACAAAATGCAA+GGG 0.642562 1_1:+48072793 None:intergenic
CTTATGCTAGGAATTACTGT+TGG 0.643330 1_1:-48074024 Msa0025060:CDS
AAAGATCACAGAATGAGGAT+GGG 0.663631 1_1:-48072869 Msa0025060:CDS
GCAATGAGTGGTATTGTAGG+TGG 0.666887 1_1:-48072779 Msa0025060:CDS
CCAAAACAGACACTGTGATG+AGG 0.668862 1_1:+48071962 None:intergenic
GAGCCTAGAATACATATGTG+AGG 0.685813 1_1:-48072840 Msa0025060:CDS
TATCTGTTCCAGAACCATAG+CGG 0.728142 1_1:+48074802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATGTTTATGTTTATA+TGG - chr1_1:48071729-48071748 Msa0025060:CDS 10.0%
!!! TTTTTTTAATGTGTTATTGA+AGG - chr1_1:48071698-48071717 Msa0025060:CDS 15.0%
!!! ATTTATTTTTATTTTTGTGC+AGG - chr1_1:48072588-48072607 Msa0025060:intron 15.0%
!!! AATCATTAATTCAAGTTTTT+AGG - chr1_1:48072729-48072748 Msa0025060:CDS 15.0%
!! AAAACAAAAATTAGAGAAAA+AGG + chr1_1:48072770-48072789 None:intergenic 15.0%
!! TAAAATAAACAGTTTATTGT+TGG - chr1_1:48073243-48073262 Msa0025060:intron 15.0%
!!! ATTTATAGAGTTTTAAGAAA+AGG + chr1_1:48073454-48073473 None:intergenic 15.0%
!!! ATGTTATACATTTTTATTTC+AGG - chr1_1:48074690-48074709 Msa0025060:intron 15.0%
!!! TAATTAATTTAGAGTAAAGT+AGG - chr1_1:48074789-48074808 Msa0025060:intron 15.0%
!! AAAGAGTAAGAAAAATTTAC+AGG + chr1_1:48071677-48071696 None:intergenic 20.0%
!!! TATTATTGATTGAATTGTTG+CGG - chr1_1:48072273-48072292 Msa0025060:intron 20.0%
!! ATTATTGTTGTGTAGAAAAA+TGG + chr1_1:48072570-48072589 None:intergenic 20.0%
!! TGGATATATATGCTTATAAT+AGG - chr1_1:48072701-48072720 Msa0025060:CDS 20.0%
!! AAATAAATTCATAAGGCATA+GGG + chr1_1:48074448-48074467 None:intergenic 20.0%
!! TGCAAACAAATAAATTCATA+AGG + chr1_1:48074455-48074474 None:intergenic 20.0%
!! TTATAGATACTAACAAATTG+AGG + chr1_1:48074637-48074656 None:intergenic 20.0%
!!! ATTTTTATTTCAGGTATTGT+TGG - chr1_1:48074699-48074718 Msa0025060:intron 20.0%
!! TATAAAAAAAGTTCAGCATA+CGG + chr1_1:48074966-48074985 None:intergenic 20.0%
!!! AATTATTTTCACAGATAAGA+AGG + chr1_1:48075046-48075065 None:intergenic 20.0%
! ATAAACTATGAAGTTTCTTG+TGG + chr1_1:48071522-48071541 None:intergenic 25.0%
!!! ATTTAGTTGGAAACTTGTTT+TGG - chr1_1:48071782-48071801 Msa0025060:intron 25.0%
!!! ATTGGTTTTAGGTATGATAA+TGG - chr1_1:48072297-48072316 Msa0025060:intron 25.0%
!!! TTGGTTTTAGGTATGATAAT+GGG - chr1_1:48072298-48072317 Msa0025060:intron 25.0%
! TATACAAATTTCCACAATAG+TGG - chr1_1:48072857-48072876 Msa0025060:CDS 25.0%
!!! TAGTTGACTTCTTTTCTTTA+GGG + chr1_1:48072990-48073009 None:intergenic 25.0%
!!! ATAGTTGACTTCTTTTCTTT+AGG + chr1_1:48072991-48073010 None:intergenic 25.0%
! TAAAGAAAAGAAGTCAACTA+TGG - chr1_1:48072990-48073009 Msa0025060:intron 25.0%
!! TTACCTTGATGATTTGAATA+AGG + chr1_1:48073166-48073185 None:intergenic 25.0%
! ACTGCAATTCATAATATGTT+TGG + chr1_1:48073349-48073368 None:intergenic 25.0%
! AAAACTCTATAAATGCAATG+TGG - chr1_1:48073460-48073479 Msa0025060:CDS 25.0%
! CAATTGACAATTGAAAATTC+TGG + chr1_1:48074022-48074041 None:intergenic 25.0%
! ATGCTGATAATTTAAATTGC+AGG - chr1_1:48074250-48074269 Msa0025060:intron 25.0%
!! GGATCCATTTTCAATTTAAT+TGG - chr1_1:48074397-48074416 Msa0025060:intron 25.0%
! CAAATAAATTCATAAGGCAT+AGG + chr1_1:48074449-48074468 None:intergenic 25.0%
! ACAGTTCTTTGTTAGAAAAT+TGG - chr1_1:48074519-48074538 Msa0025060:intron 25.0%
! GAGATATAGATATTCAATGT+TGG + chr1_1:48074870-48074889 None:intergenic 25.0%
! CATTGAATATCTATATCTCT+AGG - chr1_1:48074871-48074890 Msa0025060:CDS 25.0%
!!! AGTTTTCAGGATTGAAATTT+TGG - chr1_1:48074939-48074958 Msa0025060:CDS 25.0%
! TAGCATTGTTACTAATTACT+TGG + chr1_1:48075018-48075037 None:intergenic 25.0%
! CTTATCTGTGAAAATAATTG+TGG - chr1_1:48075047-48075066 Msa0025060:five_prime_UTR 25.0%
GTAGCAATCAAAATCAAAAG+AGG + chr1_1:48071382-48071401 None:intergenic 30.0%
!!! ATGATGGTTTTTGGTTGTTA+TGG + chr1_1:48071592-48071611 None:intergenic 30.0%
!! GTTTGATGATGATGATAACA+AGG + chr1_1:48071618-48071637 None:intergenic 30.0%
TTTGTGTGTTTATTATGTGC+AGG - chr1_1:48071752-48071771 Msa0025060:intron 30.0%
TGTTTATTATGTGCAGGAAT+TGG - chr1_1:48071758-48071777 Msa0025060:intron 30.0%
!!! GCTACAGTTATTGGTTTTTT+TGG - chr1_1:48071804-48071823 Msa0025060:intron 30.0%
TTATCAGTAGAAATCGAACT+CGG - chr1_1:48071951-48071970 Msa0025060:CDS 30.0%
TATCAGTGTGTCTAATAAGT+AGG - chr1_1:48072019-48072038 Msa0025060:intron 30.0%
TAATCAGTAGGAATCAAACT+CGG - chr1_1:48072089-48072108 Msa0025060:intron 30.0%
AGAATAAACTTAGATACCAC+CGG + chr1_1:48072223-48072242 None:intergenic 30.0%
!!! TGGTTTTAGGTATGATAATG+GGG - chr1_1:48072299-48072318 Msa0025060:intron 30.0%
AGTTTGGTATAATTTGAGAG+TGG - chr1_1:48072336-48072355 Msa0025060:intron 30.0%
! AATATTGGCACTTCTTTTGT+TGG + chr1_1:48072367-48072386 None:intergenic 30.0%
GCCAATATTAGACTATGATT+TGG - chr1_1:48072378-48072397 Msa0025060:intron 30.0%
GCCAAATCATAGTCTAATAT+TGG + chr1_1:48072382-48072401 None:intergenic 30.0%
! CTATGAAGAGAATGATAATG+AGG + chr1_1:48072489-48072508 None:intergenic 30.0%
CTCATTATCATTCTCTTCAT+AGG - chr1_1:48072487-48072506 Msa0025060:intron 30.0%
TTATCATTCTCTTCATAGGT+TGG - chr1_1:48072491-48072510 Msa0025060:intron 30.0%
!! TCTTTAAGGTCATTCTTCAA+AGG - chr1_1:48072615-48072634 Msa0025060:intron 30.0%
TCTTCAAAGGAATTGAAATG+TGG - chr1_1:48072628-48072647 Msa0025060:intron 30.0%
! GCTACTTTGGTTAATTCTAA+TGG - chr1_1:48072819-48072838 Msa0025060:CDS 30.0%
! TCTAATGGAGAATTTAAAGC+AGG - chr1_1:48072834-48072853 Msa0025060:CDS 30.0%
AGATAAGATAACCACTATTG+TGG + chr1_1:48072871-48072890 None:intergenic 30.0%
!! TTCTTTTCTTTAGGGATCAA+TGG + chr1_1:48072982-48073001 None:intergenic 30.0%
!! AAACAGAGAATTTGCTGAAA+GGG + chr1_1:48073089-48073108 None:intergenic 30.0%
TTGGAAACTGAAACAGAAAA+TGG + chr1_1:48073515-48073534 None:intergenic 30.0%
! TCAGTTTCCAATTGCATTTT+TGG - chr1_1:48073524-48073543 Msa0025060:intron 30.0%
GGTAAGCAAAATTGAAAAGA+GGG + chr1_1:48073785-48073804 None:intergenic 30.0%
TGGTAAGCAAAATTGAAAAG+AGG + chr1_1:48073786-48073805 None:intergenic 30.0%
TCTGGTCAACACAATTAAAA+GGG + chr1_1:48074004-48074023 None:intergenic 30.0%
TTCTGGTCAACACAATTAAA+AGG + chr1_1:48074005-48074024 None:intergenic 30.0%
!!! AGTTTTTTATTTGTCACCAC+CGG + chr1_1:48074218-48074237 None:intergenic 30.0%
TTGAATTCTACATTCTCAAG+AGG - chr1_1:48074327-48074346 Msa0025060:intron 30.0%
!! AGTTGATGAAGATTACCATA+AGG + chr1_1:48074362-48074381 None:intergenic 30.0%
CTGGCCAATTAAATTGAAAA+TGG + chr1_1:48074404-48074423 None:intergenic 30.0%
CCAGTGTTATAATATTGTAC+TGG + chr1_1:48074423-48074442 None:intergenic 30.0%
CCAGTACAATATTATAACAC+TGG - chr1_1:48074420-48074439 Msa0025060:intron 30.0%
AGAAAATTGGTTGCATTTCT+TGG - chr1_1:48074532-48074551 Msa0025060:intron 30.0%
GAAAATTGGTTGCATTTCTT+GGG - chr1_1:48074533-48074552 Msa0025060:intron 30.0%
TATGTTTCCATTATTACCCA+TGG + chr1_1:48074614-48074633 None:intergenic 30.0%
AAGTAGGAATAGCAAACAAA+AGG - chr1_1:48074805-48074824 Msa0025060:CDS 30.0%
AGCAAACAAAAGGAAAATCA+AGG - chr1_1:48074815-48074834 Msa0025060:CDS 30.0%
GCAAACAAAAGGAAAATCAA+GGG - chr1_1:48074816-48074835 Msa0025060:CDS 30.0%
!!! TAGTGATTACGTTAGTTTTC+AGG - chr1_1:48074926-48074945 Msa0025060:CDS 30.0%
TTTATATCTACCTAGCTACT+TGG - chr1_1:48074980-48074999 Msa0025060:five_prime_UTR 30.0%
TTATATCTACCTAGCTACTT+GGG - chr1_1:48074981-48075000 Msa0025060:five_prime_UTR 30.0%
! TGGCTATTTATTTGTTGCAG+AGG + chr1_1:48071417-48071436 None:intergenic 35.0%
! ACAAGGAGAATGATGGTTTT+TGG + chr1_1:48071601-48071620 None:intergenic 35.0%
GATGATAACAAGGAGAATGA+TGG + chr1_1:48071608-48071627 None:intergenic 35.0%
!! GTTCTGGAACAGATAGAATT+TGG - chr1_1:48071651-48071670 Msa0025060:three_prime_UTR 35.0%
TGCAGGAATTGGAATTTAGT+TGG - chr1_1:48071769-48071788 Msa0025060:intron 35.0%
!!! CTTGTTTTGGCTACAGTTAT+TGG - chr1_1:48071795-48071814 Msa0025060:intron 35.0%
CCAAGAAGAAGATTAAGCAT+AGG + chr1_1:48071879-48071898 None:intergenic 35.0%
CCTATGCTTAATCTTCTTCT+TGG - chr1_1:48071876-48071895 Msa0025060:CDS 35.0%
AAATCGAACTCGGTATTTCA+GGG - chr1_1:48071961-48071980 Msa0025060:CDS 35.0%
! GAGTTTGATTCCTACTGATT+AGG + chr1_1:48072090-48072109 None:intergenic 35.0%
TAGAAACATTGATACCATCG+AGG + chr1_1:48072150-48072169 None:intergenic 35.0%
AGAATTGAACTTCGTACTCT+AGG - chr1_1:48072173-48072192 Msa0025060:CDS 35.0%
GAATTGAACTTCGTACTCTA+GGG - chr1_1:48072174-48072193 Msa0025060:CDS 35.0%
TGATTGAATTGTTGCGGAAT+TGG - chr1_1:48072279-48072298 Msa0025060:intron 35.0%
!!! ATTGTTGCGGAATTGGTTTT+AGG - chr1_1:48072286-48072305 Msa0025060:intron 35.0%
!!! GGTTTTAGGTATGATAATGG+GGG - chr1_1:48072300-48072319 Msa0025060:intron 35.0%
GTAATTCCTAGCATAAGCAT+TGG + chr1_1:48072418-48072437 None:intergenic 35.0%
CTTATGCTAGGAATTACTGT+TGG - chr1_1:48072421-48072440 Msa0025060:intron 35.0%
!!! TCAGTGTTGTTTTCCCTTTT+TGG - chr1_1:48072452-48072471 Msa0025060:intron 35.0%
TTTGTGCAGGAACTTCTTTA+AGG - chr1_1:48072601-48072620 Msa0025060:intron 35.0%
TCAAAGGAATTGAAATGTGG+AGG - chr1_1:48072631-48072650 Msa0025060:intron 35.0%
CAAAGGAATTGAAATGTGGA+GGG - chr1_1:48072632-48072651 Msa0025060:intron 35.0%
!! TCTTGACTTGAGTTGACTAA+TGG - chr1_1:48072681-48072700 Msa0025060:intron 35.0%
!! GAAACAGAGAATTTGCTGAA+AGG + chr1_1:48073090-48073109 None:intergenic 35.0%
TTCTCTGTTTCAACCTTAGA+TGG - chr1_1:48073099-48073118 Msa0025060:intron 35.0%
CTAAAATCCTCTTCCATCTA+AGG + chr1_1:48073115-48073134 None:intergenic 35.0%
!! GAAGAGGATTTTAGTGCTTT+TGG - chr1_1:48073121-48073140 Msa0025060:intron 35.0%
! CCTTGATGATTTGAATAAGG+AGG + chr1_1:48073163-48073182 None:intergenic 35.0%
CCTCCTTATTCAAATCATCA+AGG - chr1_1:48073160-48073179 Msa0025060:CDS 35.0%
CATCAAAAACCTTGATGTGA+CGG - chr1_1:48073409-48073428 Msa0025060:intron 35.0%
AAAGGTTTATGACCACAGTT+TGG + chr1_1:48073436-48073455 None:intergenic 35.0%
ACAGAAAATGGACATGTGTA+TGG + chr1_1:48073503-48073522 None:intergenic 35.0%
CCAAACACCAAAAATGCAAT+TGG + chr1_1:48073534-48073553 None:intergenic 35.0%
!!! CCAATTGCATTTTTGGTGTT+TGG - chr1_1:48073531-48073550 Msa0025060:intron 35.0%
TGTACAAAGATCACAGAATG+AGG - chr1_1:48073571-48073590 Msa0025060:intron 35.0%
AAAGATCACAGAATGAGGAT+GGG - chr1_1:48073576-48073595 Msa0025060:intron 35.0%
ATGCCTCACATATGTATTCT+AGG + chr1_1:48073611-48073630 None:intergenic 35.0%
! TATGTGAGGCATCAATAGAA+TGG - chr1_1:48073619-48073638 Msa0025060:CDS 35.0%
ACTCATTGCACAAAATGCAA+GGG + chr1_1:48073655-48073674 None:intergenic 35.0%
!! TTCTGGAGGTGGATTTATTT+TGG - chr1_1:48073710-48073729 Msa0025060:intron 35.0%
!! TCTGGAGGTGGATTTATTTT+GGG - chr1_1:48073711-48073730 Msa0025060:intron 35.0%
TGCTTACCAATGTTGTTGAT+CGG - chr1_1:48073797-48073816 Msa0025060:CDS 35.0%
! CGATTCACAATTGATAACAC+TGG + chr1_1:48073898-48073917 None:intergenic 35.0%
ATCACATTGTAGCTATAGTG+TGG + chr1_1:48074094-48074113 None:intergenic 35.0%
GAAGATTACCATAAGGCATA+GGG + chr1_1:48074355-48074374 None:intergenic 35.0%
TGAAGATTACCATAAGGCAT+AGG + chr1_1:48074356-48074375 None:intergenic 35.0%
TCAACTCTTCAAAGCTTAAC+TGG - chr1_1:48074376-48074395 Msa0025060:intron 35.0%
ATACACAACCATGAGTTCAT+GGG - chr1_1:48074744-48074763 Msa0025060:intron 35.0%
AATCAAGGGTTCATAGATGT+TGG - chr1_1:48074830-48074849 Msa0025060:CDS 35.0%
TATATCTACCTAGCTACTTG+GGG - chr1_1:48074982-48075001 Msa0025060:five_prime_UTR 35.0%
! GTGTTTGGTTTATGCAGTGA+TGG + chr1_1:48071437-48071456 None:intergenic 40.0%
GTTTCTTGTGGACATTGTCA+TGG + chr1_1:48071510-48071529 None:intergenic 40.0%
TCATCAAACTCTAACCGCTA+TGG - chr1_1:48071629-48071648 Msa0025060:three_prime_UTR 40.0%
TATCTGTTCCAGAACCATAG+CGG + chr1_1:48071646-48071665 None:intergenic 40.0%
!!! GGTTTTTTTGGATCAGCATG+TGG - chr1_1:48071816-48071835 Msa0025060:intron 40.0%
GAAATCGAACTCGGTATTTC+AGG - chr1_1:48071960-48071979 Msa0025060:CDS 40.0%
ACACTGATACCGATGAGTAT+CGG + chr1_1:48072008-48072027 None:intergenic 40.0%
CACAAACTGACCTAATCAGT+AGG - chr1_1:48072077-48072096 Msa0025060:intron 40.0%
GGAATCAAACTCGGTATTCT+AGG - chr1_1:48072098-48072117 Msa0025060:intron 40.0%
TTACAACATTCACACACACG+CGG - chr1_1:48072122-48072141 Msa0025060:CDS 40.0%
TTTCAGCCAATGCTTATGCT+AGG - chr1_1:48072409-48072428 Msa0025060:intron 40.0%
GGACAGTGATAAGCCAAAAA+GGG + chr1_1:48072468-48072487 None:intergenic 40.0%
AGGACAGTGATAAGCCAAAA+AGG + chr1_1:48072469-48072488 None:intergenic 40.0%
AACTGCTAAGCAAGCTACTT+TGG - chr1_1:48072806-48072825 Msa0025060:CDS 40.0%
GTTTCAACCTTAGATGGAAG+AGG - chr1_1:48073105-48073124 Msa0025060:intron 40.0%
!! TTTTAGTGCTTTTGGCTGTG+TGG - chr1_1:48073129-48073148 Msa0025060:intron 40.0%
ACAGAGCTCTTATAGTGAGA+GGG + chr1_1:48073193-48073212 None:intergenic 40.0%
AACAGAGCTCTTATAGTGAG+AGG + chr1_1:48073194-48073213 None:intergenic 40.0%
CAAAGATCACAGAATGAGGA+TGG - chr1_1:48073575-48073594 Msa0025060:intron 40.0%
GAGCCTAGAATACATATGTG+AGG - chr1_1:48073605-48073624 Msa0025060:intron 40.0%
CACTCATTGCACAAAATGCA+AGG + chr1_1:48073656-48073675 None:intergenic 40.0%
! CTTGCATTTTGTGCAATGAG+TGG - chr1_1:48073654-48073673 Msa0025060:intron 40.0%
TGTGCAATGAGTGGTATTGT+AGG - chr1_1:48073663-48073682 Msa0025060:intron 40.0%
GGTATTGTAGGTGGAATTGT+TGG - chr1_1:48073675-48073694 Msa0025060:intron 40.0%
ATTGTAGGTGGAATTGTTGG+AGG - chr1_1:48073678-48073697 Msa0025060:intron 40.0%
!!! CTGGAGGTGGATTTATTTTG+GGG - chr1_1:48073712-48073731 Msa0025060:intron 40.0%
GGAACATATAGTGTACCTGA+GGG + chr1_1:48073764-48073783 None:intergenic 40.0%
TGCTATCCGATCAACAACAT+TGG + chr1_1:48073806-48073825 None:intergenic 40.0%
TGATCGGATAGCAACAATAG+TGG - chr1_1:48073813-48073832 Msa0025060:CDS 40.0%
CGATTTAGTGTGGAGTGTAA+TGG + chr1_1:48073851-48073870 None:intergenic 40.0%
AACACTGGTCAACACAATTG+CGG + chr1_1:48073883-48073902 None:intergenic 40.0%
ACATTGTAGCTATAGTGTGG+CGG + chr1_1:48074091-48074110 None:intergenic 40.0%
CAGCTTCTATTTGACAACAC+CGG - chr1_1:48074196-48074215 Msa0025060:intron 40.0%
AATTGGTTGCATTTCTTGGG+AGG - chr1_1:48074536-48074555 Msa0025060:intron 40.0%
ATTGGTTGCATTTCTTGGGA+GGG - chr1_1:48074537-48074556 Msa0025060:intron 40.0%
GTCATTGTATTCATCCTCTC+TGG - chr1_1:48074565-48074584 Msa0025060:intron 40.0%
TGGCAAAAATAACACCAGAG+AGG + chr1_1:48074582-48074601 None:intergenic 40.0%
GATACACAACCATGAGTTCA+TGG - chr1_1:48074743-48074762 Msa0025060:intron 40.0%
CATGAGTTCATGGGATTCTT+GGG - chr1_1:48074753-48074772 Msa0025060:intron 40.0%
AACTCTAACCGCTATGGTTC+TGG - chr1_1:48071635-48071654 Msa0025060:three_prime_UTR 45.0%
AGAAAGAGCAGCAGCAGATT+TGG + chr1_1:48071910-48071929 None:intergenic 45.0%
ACACACACACCGATACTCAT+CGG - chr1_1:48071996-48072015 Msa0025060:intron 45.0%
CGACTAGAACTGCAAATCTC+AGG + chr1_1:48072945-48072964 None:intergenic 45.0%
! TGGTTTGCAGACTGATGTAG+AGG - chr1_1:48073263-48073282 Msa0025060:intron 45.0%
! GTATGGTATTGGGTGCTCTT+CGG - chr1_1:48073294-48073313 Msa0025060:CDS 45.0%
GCAATGAGTGGTATTGTAGG+TGG - chr1_1:48073666-48073685 Msa0025060:intron 45.0%
GGAATTGTTGGAGGCTTACT+TGG - chr1_1:48073687-48073706 Msa0025060:intron 45.0%
ACACCTATCTCAAGGAGAAG+AGG + chr1_1:48073738-48073757 None:intergenic 45.0%
GGGAACATATAGTGTACCTG+AGG + chr1_1:48073765-48073784 None:intergenic 45.0%
!! GCTAGAGTGTCGATTTAGTG+TGG + chr1_1:48073861-48073880 None:intergenic 45.0%
CTTCTATTTGACAACACCGG+TGG - chr1_1:48074199-48074218 Msa0025060:intron 45.0%
AAGAGGTTCCCTATGCCTTA+TGG - chr1_1:48074344-48074363 Msa0025060:intron 45.0%
CCAAAACAGACACTGTGATG+AGG + chr1_1:48074486-48074505 None:intergenic 45.0%
! CCTCATCACAGTGTCTGTTT+TGG - chr1_1:48074483-48074502 Msa0025060:intron 45.0%
!!! ATCACAGTGTCTGTTTTGGC+TGG - chr1_1:48074487-48074506 Msa0025060:intron 45.0%
GCTCTCACCATGGGTAATAA+TGG - chr1_1:48074604-48074623 Msa0025060:CDS 45.0%
CCAAGAATCCCATGAACTCA+TGG + chr1_1:48074755-48074774 None:intergenic 45.0%
CCATGAGTTCATGGGATTCT+TGG - chr1_1:48074752-48074771 Msa0025060:intron 45.0%
! ATAAAGTGCCCCAAGTAGCT+AGG + chr1_1:48074993-48075012 None:intergenic 45.0%
GTTGTGCGTGTGTGTGTGTT+TGG + chr1_1:48071452-48071471 None:intergenic 50.0%
GGGCATCAGCATCATCAGTT+TGG - chr1_1:48072320-48072339 Msa0025060:intron 50.0%
GAGGGTTGAGACTCTTCTCA+AGG - chr1_1:48072650-48072669 Msa0025060:intron 50.0%
ATGTAGAGGCCTGCAGTGTA+TGG - chr1_1:48073277-48073296 Msa0025060:intron 50.0%
AGGCCTGCAGTGTATGGTAT+TGG - chr1_1:48073283-48073302 Msa0025060:intron 50.0%
GGCCTGCAGTGTATGGTATT+GGG - chr1_1:48073284-48073303 Msa0025060:intron 50.0%
CACCCAATACCATACACTGC+AGG + chr1_1:48073289-48073308 None:intergenic 50.0%
CAGTTTGGACCGTCACATCA+AGG + chr1_1:48073421-48073440 None:intergenic 50.0%
TGATGTGACGGTCCAAACTG+TGG - chr1_1:48073421-48073440 Msa0025060:intron 50.0%
ACAGAATGAGGATGGGCACA+GGG - chr1_1:48073583-48073602 Msa0025060:intron 50.0%
GTTGGAGGCTTACTTGGTTC+TGG - chr1_1:48073693-48073712 Msa0025060:intron 50.0%
GAGGGATGACACCTATCTCA+AGG + chr1_1:48073746-48073765 None:intergenic 50.0%
! TGAGATAGGTGTCATCCCTC+AGG - chr1_1:48073746-48073765 Msa0025060:intron 50.0%
!!! TGTCTGTTTTGGCTGGCTTC+TGG - chr1_1:48074494-48074513 Msa0025060:intron 50.0%
!!! GTCTGTTTTGGCTGGCTTCT+GGG - chr1_1:48074495-48074514 Msa0025060:intron 50.0%
!!! TCTGTTTTGGCTGGCTTCTG+GGG - chr1_1:48074496-48074515 Msa0025060:intron 50.0%
! TTTTGCCAGTGCTCTCACCA+TGG - chr1_1:48074594-48074613 Msa0025060:CDS 50.0%
TTTGCCAGTGCTCTCACCAT+GGG - chr1_1:48074595-48074614 Msa0025060:CDS 50.0%
! ATTACCCATGGTGAGAGCAC+TGG + chr1_1:48074602-48074621 None:intergenic 50.0%
CGCAGAGAGAGTAGCAAGAC+AGG + chr1_1:48071558-48071577 None:intergenic 55.0%
GGATCAGCATGTGGAACCGT+TGG - chr1_1:48071825-48071844 Msa0025060:intron 55.0%
TCAGCATGTGGAACCGTTGG+TGG - chr1_1:48071828-48071847 Msa0025060:intron 55.0%
!! TGTGGAACCGTTGGTGGTGT+TGG - chr1_1:48071834-48071853 Msa0025060:intron 55.0%
CAACACTCGCACACTGACAC+CGG - chr1_1:48072201-48072220 Msa0025060:intron 55.0%
CACAGAATGAGGATGGGCAC+AGG - chr1_1:48073582-48073601 Msa0025060:intron 55.0%
!! GGAGGCTTACTTGGTTCTGG+AGG - chr1_1:48073696-48073715 Msa0025060:intron 55.0%
!! GGCTTACTTGGTTCTGGAGG+TGG - chr1_1:48073699-48073718 Msa0025060:intron 55.0%
GGGCCTCTTCTCCTTGAGAT+AGG - chr1_1:48073732-48073751 Msa0025060:intron 55.0%
GCAATAGCGTCACAGCGCAA+TGG + chr1_1:48074169-48074188 None:intergenic 55.0%
!! GGAACCGTTGGTGGTGTTGG+TGG - chr1_1:48071837-48071856 Msa0025060:intron 60.0%
!! ACCGTTGGTGGTGTTGGTGG+CGG - chr1_1:48071840-48071859 Msa0025060:intron 60.0%
ACCGCCACCAACACCACCAA+CGG + chr1_1:48071844-48071863 None:intergenic 60.0%
ACACACACGCGGATCCTCGA+TGG - chr1_1:48072133-48072152 Msa0025060:CDS 60.0%
! TTGGGTGCTCTTCGGCTTGC+AGG - chr1_1:48073302-48073321 Msa0025060:CDS 60.0%
!! GTTGGTGGTGTTGGTGGCGG+TGG - chr1_1:48071843-48071862 Msa0025060:intron 65.0%
CACTCGCACACTGACACCGG+TGG - chr1_1:48072204-48072223 Msa0025060:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48071379 48075088 48071379 ID=Msa0025060;Name=Msa0025060
chr1_1 mRNA 48071379 48075088 48071379 ID=Msa0025060-mRNA-1;Parent=Msa0025060;Name=Msa0025060-mRNA-1;_AED=0.18;_eAED=0.18;_QI=130|0.90|0.91|1|1|1|12|297|452
chr1_1 exon 48071379 48071755 48071379 ID=Msa0025060-mRNA-1:exon:13755;Parent=Msa0025060-mRNA-1
chr1_1 exon 48071851 48071991 48071851 ID=Msa0025060-mRNA-1:exon:13754;Parent=Msa0025060-mRNA-1
chr1_1 exon 48072102 48072195 48072102 ID=Msa0025060-mRNA-1:exon:13753;Parent=Msa0025060-mRNA-1
chr1_1 exon 48072700 48072939 48072700 ID=Msa0025060-mRNA-1:exon:13752;Parent=Msa0025060-mRNA-1
chr1_1 exon 48073144 48073194 48073144 ID=Msa0025060-mRNA-1:exon:13751;Parent=Msa0025060-mRNA-1
chr1_1 exon 48073286 48073372 48073286 ID=Msa0025060-mRNA-1:exon:13750;Parent=Msa0025060-mRNA-1
chr1_1 exon 48073456 48073511 48073456 ID=Msa0025060-mRNA-1:exon:13749;Parent=Msa0025060-mRNA-1
chr1_1 exon 48073612 48073666 48073612 ID=Msa0025060-mRNA-1:exon:13748;Parent=Msa0025060-mRNA-1
chr1_1 exon 48073796 48073857 48073796 ID=Msa0025060-mRNA-1:exon:13747;Parent=Msa0025060-mRNA-1
chr1_1 exon 48073959 48074159 48073959 ID=Msa0025060-mRNA-1:exon:13746;Parent=Msa0025060-mRNA-1
chr1_1 exon 48074570 48074693 48074570 ID=Msa0025060-mRNA-1:exon:13745;Parent=Msa0025060-mRNA-1
chr1_1 exon 48074791 48075088 48074791 ID=Msa0025060-mRNA-1:exon:13744;Parent=Msa0025060-mRNA-1
chr1_1 five_prime_UTR 48074959 48075088 48074959 ID=Msa0025060-mRNA-1:five_prime_utr;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48074791 48074958 48074791 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48074570 48074693 48074570 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48073959 48074159 48073959 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48073796 48073857 48073796 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48073612 48073666 48073612 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48073456 48073511 48073456 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48073286 48073372 48073286 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48073144 48073194 48073144 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48072700 48072939 48072700 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48072102 48072195 48072102 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48071851 48071991 48071851 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 CDS 48071676 48071755 48071676 ID=Msa0025060-mRNA-1:cds;Parent=Msa0025060-mRNA-1
chr1_1 three_prime_UTR 48071379 48071675 48071379 ID=Msa0025060-mRNA-1:three_prime_utr;Parent=Msa0025060-mRNA-1
Gene Sequence

>Msa0025060

ATGACAATGTCCACAAGAAACTTCATAGTTTATCTAGTATCATGTTCCTGTCTTGCTACTCTCTCTGCGTTATTTCTCATCCATAACAACCAAAAACCATCATTCTCCTTGTTATCATCATCATCAAACTCTAACCGCTATGGTTCTGGAACAGATAGAATTTGGCCTGAATTGGAATTTAGTTGGAAACTTGTTTTGGCTACAGTTATTGGTTTTTTTGGATCAGCATGTGGAACCGTTGGTGGTGTTGGTGGCGGTGGCATTTTTGTTCCTATGCTTAATCTTCTTCTTGGTATGATAATGGGGGCATCAGCATCATCAGTTTGGTATAATTTGAGAGTGGCTCATCCAACAAAAGAAGTGCCAATATTAGACTATGATTTGGCTCTTTTGTTTCAGCCAATGCTTATGCTAGGAATTACTGTTGGTGTTACTCTCAGTGTTGTTTTCCCTTTTTGGCTTATCACTGTCCTCATTATCATTCTCTTCATAGGAACTTCTTTAAGGTCATTCTTCAAAGGAATTGAAATGTGGAGGGTTGAGACTCTTCTCAAGAATGAAACTGCTAAGCAAGCTACTTTGGTTAATTCTAATGGAGAATTTAAAGCAGTTCTAGTCGACACGAAGCTTGAGCCATTGATCCCTAAAGAAAAGAAGTCAACTATGCAAATTCTCTGTTTCAACCTTAGATGGAAGAGGATTTTAGTGCTTTTGGCTGTGTGGTTTTCTTTCCTCCTTATTCAAATCATCAAGACTGATGTAGAGGCCTGCAGTGTATGGTATTGGGTGCTCTTCGGCTTGCAGTTTCCAATTGCATTTTTGGTGTTTGGCTTTGAAGCAGTCAAGTTGTACAAAGATCACAGAATGAGGATGGGCACAGGGAGCCTAGAATACATATGTGAGGCATCAATAGAATGGAGTGCTACGTCCCTTGCATTTTGTGCAATGAGTGGTATTGTAGGTGGAATTGTTGGAGGCTTACTTGGTTCTGGAGGTGGATTTATTTTGGGGCCTCTTCTCCTTGAGATAGGTGTCATCCCTCAGGTTGCTAGTGCAACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCTGTTTTTGAATTCTACATTCTCAAGAGGTTCCCTATGCCTTATGCATTATACCTCATCACAGTGTCTGTTTTGGCTGGCTTCTGGGGACAGTTCTTTGTTAGAAAATTGGTTGCATTTCTTGGGAGGGCATCAGTCATTGTATTCATCCTCTCTGGTGTTATTTTTGCCAGTGCTCTCACCATGGGTATTGTTGGCACTGAGAAGAGTATTGAAATGATACACAACCATGAGTTCATGGGATTCTTGGGATTTTGTAGCACTTAA

Protein sequence

>Msa0025060

MTMSTRNFIVYLVSCSCLATLSALFLIHNNQKPSFSLLSSSSNSNRYGSGTDRIWPELEFSWKLVLATVIGFFGSACGTVGGVGGGGIFVPMLNLLLGMIMGASASSVWYNLRVAHPTKEVPILDYDLALLFQPMLMLGITVGVTLSVVFPFWLITVLIIILFIGTSLRSFFKGIEMWRVETLLKNETAKQATLVNSNGEFKAVLVDTKLEPLIPKEKKSTMQILCFNLRWKRILVLLAVWFSFLLIQIIKTDVEACSVWYWVLFGLQFPIAFLVFGFEAVKLYKDHRMRMGTGSLEYICEASIEWSATSLAFCAMSGIVGGIVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVFEFYILKRFPMPYALYLITVSVLAGFWGQFFVRKLVAFLGRASVIVFILSGVIFASALTMGIVGTEKSIEMIHNHEFMGFLGFCST*