AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1152350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152350 MtrunA17_Chr7g0242461 99.216 255 2 0 1 255 1 255 0.0 525
Msa1152350 MtrunA17_Chr4g0006731 63.281 256 92 1 1 254 1 256 8.81e-125 355
Msa1152350 MtrunA17_Chr7g0242451 61.417 254 97 1 1 254 1 253 1.19e-117 337
Msa1152350 MtrunA17_Chr7g0242401 64.167 240 84 2 5 243 32 270 4.68e-112 323
Msa1152350 MtrunA17_Chr3g0113401 57.031 256 108 1 1 254 1 256 4.32e-110 317
Msa1152350 MtrunA17_Chr7g0242431 61.925 239 89 2 6 243 32 269 7.86e-104 302
Msa1152350 MtrunA17_Chr7g0242411 58.750 240 92 4 5 243 1 234 2.12e-96 282
Msa1152350 MtrunA17_Chr7g0242391 55.777 251 105 4 5 250 1 250 9.91e-95 278
Msa1152350 MtrunA17_Chr7g0242441 44.167 240 70 4 5 243 2 178 7.95e-59 185
Msa1152350 MtrunA17_Chr2g0283411 40.566 212 116 3 6 207 4 215 4.44e-53 172
Msa1152350 MtrunA17_Chr2g0283421 40.476 210 117 3 6 207 5 214 9.78e-51 166
Msa1152350 MtrunA17_Chr4g0059001 37.037 189 112 1 27 208 51 239 4.33e-33 121
Msa1152350 MtrunA17_Chr2g0283391 32.759 174 98 7 41 207 1 162 1.22e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152350 AT3G11210.1 62.500 256 94 1 1 254 1 256 1.27e-118 339
Msa1152350 AT2G38180.1 63.274 226 83 0 1 226 1 226 9.24e-107 311
Msa1152350 AT5G62930.1 42.489 233 119 3 5 230 1 225 2.86e-60 191
Msa1152350 AT5G62930.2 42.489 233 119 3 5 230 27 251 6.80e-60 191
Msa1152350 AT5G45920.1 43.333 210 112 3 5 207 2 211 2.77e-54 175
Msa1152350 AT5G45920.4 43.333 210 112 3 5 207 2 211 2.77e-54 175
Msa1152350 AT5G45920.2 43.646 181 95 3 5 178 2 182 1.13e-46 154
Msa1152350 AT5G45920.3 43.646 181 95 3 5 178 2 182 1.13e-46 154
Msa1152350 AT5G62930.3 37.870 169 90 3 69 230 7 167 1.22e-32 118

Find 91 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTACGTTGTTATCTTATT+TGG 0.199619 7_4:+37705381 None:intergenic
TAGTATTGAAGGAAATATTA+AGG 0.265182 7_4:-37702893 Msa1152350:CDS
ATCAAAACTCATCTGAATTA+TGG 0.265773 7_4:+37705308 None:intergenic
AGACCTCAAATCGTGCTATT+TGG 0.280414 7_4:-37705336 Msa1152350:CDS
CTAACCAGTCCTCCCTTTCC+TGG 0.283788 7_4:+37703426 None:intergenic
TCTGCACTTGGAGGGTAATA+TGG 0.315910 7_4:+37702798 None:intergenic
GTTTCCAATCTGCTTCTCTA+AGG 0.332994 7_4:+37702868 None:intergenic
ATGGAATTCAAGACGTGCTT+TGG 0.369356 7_4:-37704601 Msa1152350:CDS
TGTTGCACTATGTATCATAT+TGG 0.380482 7_4:+37705434 None:intergenic
CTTGATTTGTACTTCACTGA+TGG 0.402939 7_4:+37703708 None:intergenic
AGCTAATTTGTATGCTAGAA+AGG 0.405931 7_4:-37705262 Msa1152350:intron
ATAGTATTGAGGGGATATTC+TGG 0.415164 7_4:-37704624 Msa1152350:CDS
GAGGAGAGGTGAGAAATATA+AGG 0.417441 7_4:+37703731 None:intergenic
TAATCTCTGGTCTGCAATCC+AGG 0.419500 7_4:-37703444 Msa1152350:CDS
ATTTGAAAGTTATTAATCTC+TGG 0.420460 7_4:-37703457 Msa1152350:CDS
TGCTTATGTCCAACCATCAT+TGG 0.435106 7_4:-37704085 Msa1152350:CDS
GAAAGAAAATTTCAATTATG+TGG 0.435591 7_4:-37702590 Msa1152350:three_prime_UTR
TTGGTAATTATCTACTTTGG+TGG 0.439156 7_4:-37704066 Msa1152350:CDS
AGCACGATTTGAGGTCTCAT+TGG 0.440996 7_4:+37705342 None:intergenic
CCCTAGGAGGCATTTGCAAT+GGG 0.445483 7_4:-37702742 Msa1152350:CDS
TCATTGGTAATTATCTACTT+TGG 0.448861 7_4:-37704069 Msa1152350:CDS
TCCCATTGCAAATGCCTCCT+AGG 0.456278 7_4:+37702741 None:intergenic
ACGTGGCAAGGACTGTAAAC+TGG 0.457856 7_4:-37705515 Msa1152350:five_prime_UTR
GTGGTTCCATCTGCACTTGG+AGG 0.459823 7_4:+37702789 None:intergenic
AGTGACATCCAATGCAAACT+TGG 0.467259 7_4:+37702846 None:intergenic
GTGAAAAGTAAGTCACAGAA+TGG 0.484547 7_4:-37702560 Msa1152350:three_prime_UTR
AGGAAGCAAGGTAGTATTGA+AGG 0.487351 7_4:-37702904 Msa1152350:CDS
ATTGGAAACCAAGTTTGCAT+TGG 0.493472 7_4:-37702854 Msa1152350:CDS
GAATTCAAGACGTGCTTTGG+AGG 0.494234 7_4:-37704598 Msa1152350:CDS
GAGTCCAGTGCAACACAGAC+TGG 0.494319 7_4:-37703542 Msa1152350:intron
AGTATTGAAGGAAATATTAA+GGG 0.495090 7_4:-37702892 Msa1152350:CDS
AAGAATATAAAGAAAATATG+AGG 0.495267 7_4:-37703990 Msa1152350:CDS
GATACATAGTGCAACATCTC+AGG 0.495645 7_4:-37705427 Msa1152350:five_prime_UTR
TTGATTTGTACTTCACTGAT+GGG 0.500040 7_4:+37703709 None:intergenic
GGGTCCTTAGAGAAGCAGAT+TGG 0.505239 7_4:-37702872 Msa1152350:CDS
CTGGTCTGCAATCCAGGAAA+GGG 0.508373 7_4:-37703438 Msa1152350:CDS
GGAATCACAATTTATAGATG+TGG 0.509177 7_4:+37705455 None:intergenic
GGACCAAGACCAGATGGGTG+GGG 0.511872 7_4:+37704027 None:intergenic
AAGTAGATAATTACCAATGA+TGG 0.516176 7_4:+37704072 None:intergenic
ATAGGCGGACATAGTATTGA+GGG 0.529124 7_4:-37704634 Msa1152350:intron
AGGAGTAGTGTTTGAGTGAG+AGG 0.529430 7_4:-37705407 Msa1152350:five_prime_UTR
GAGCCAAATAGCACGATTTG+AGG 0.529805 7_4:+37705333 None:intergenic
GAAGATTGCTAACTACCTAA+AGG 0.534339 7_4:-37703968 Msa1152350:intron
AGGACCAAGACCAGATGGGT+GGG 0.535530 7_4:+37704026 None:intergenic
TGAAAAGTAAGTCACAGAAT+GGG 0.537230 7_4:-37702559 Msa1152350:three_prime_UTR
TCTGGTCTGCAATCCAGGAA+AGG 0.540521 7_4:-37703439 Msa1152350:CDS
GACCAAGACCAGATGGGTGG+GGG 0.542601 7_4:+37704028 None:intergenic
GGAGTTCATTTGTCAGCTGA+AGG 0.543643 7_4:-37702924 Msa1152350:CDS
CCCATTGCAAATGCCTCCTA+GGG 0.544514 7_4:+37702742 None:intergenic
GAATCTTCTGCATATTCAGT+TGG 0.544577 7_4:+37702822 None:intergenic
TCCCTAGGAGGCATTTGCAA+TGG 0.552104 7_4:-37702743 Msa1152350:CDS
ACATGAGGACCAAGACCAGA+TGG 0.559879 7_4:+37704021 None:intergenic
AAAATCAAAACGCTCCTCAA+AGG 0.560195 7_4:+37702461 None:intergenic
ATGTTTCTTACAGTATCCCT+AGG 0.560400 7_4:-37702758 Msa1152350:CDS
TATAGGCGGACATAGTATTG+AGG 0.561827 7_4:-37704635 Msa1152350:intron
GTGGTGGTTCCATCTGCACT+TGG 0.562402 7_4:+37702786 None:intergenic
TATTACCCTCCAAGTGCAGA+TGG 0.563691 7_4:-37702795 Msa1152350:CDS
TATTCTTCAATGGGAACATG+AGG 0.570082 7_4:+37704006 None:intergenic
GGAGTAGTGTTTGAGTGAGA+GGG 0.570999 7_4:-37705406 Msa1152350:five_prime_UTR
AGGACTGTAAACTGGCCCAA+GGG 0.574672 7_4:-37705507 Msa1152350:five_prime_UTR
AAGGACTGTAAACTGGCCCA+AGG 0.574785 7_4:-37705508 Msa1152350:five_prime_UTR
TGGTTCCATCTGCACTTGGA+GGG 0.575597 7_4:+37702790 None:intergenic
AACACTGTGGAATATATGCT+AGG 0.577811 7_4:-37703508 Msa1152350:CDS
TACTTCACTGATGGGAGGAG+AGG 0.578122 7_4:+37703717 None:intergenic
CAATCCAGGAAAGGGAGGAC+TGG 0.582716 7_4:-37703430 Msa1152350:CDS
GTCTGCAATCCAGGAAAGGG+AGG 0.583040 7_4:-37703435 Msa1152350:CDS
GAGGACCAAGACCAGATGGG+TGG 0.585053 7_4:+37704025 None:intergenic
GTAAGAAACATTTATAGTGG+TGG 0.591121 7_4:+37702770 None:intergenic
TATTGAGGGGATATTCTGGA+TGG 0.591373 7_4:-37704620 Msa1152350:CDS
AGATAATTACCAATGATGGT+TGG 0.595168 7_4:+37704076 None:intergenic
GGCAAGCATATAACGTGGCA+AGG 0.597410 7_4:-37705527 Msa1152350:five_prime_UTR
AATATATGCTAGGGCACTGG+TGG 0.598632 7_4:-37703498 Msa1152350:CDS
ATTTGTACTTCACTGATGGG+AGG 0.605876 7_4:+37703712 None:intergenic
TTTGTCAGCTGAAGGAAGCA+AGG 0.608262 7_4:-37702916 Msa1152350:CDS
ACTGTAAGAAACATTTATAG+TGG 0.610031 7_4:+37702767 None:intergenic
ACGTAGTATAAAGACATGGC+AGG 0.611285 7_4:-37705366 Msa1152350:exon
TGGAATATATGCTAGGGCAC+TGG 0.613876 7_4:-37703501 Msa1152350:CDS
TATTTGCATTATGTGTGGTG+TGG 0.617253 7_4:-37702697 Msa1152350:three_prime_UTR
GAGAGGTGAGAAATATAAGG+CGG 0.629380 7_4:+37703734 None:intergenic
AAAACTCATCTGAATTATGG+AGG 0.630001 7_4:+37705311 None:intergenic
CATGAGGACCAAGACCAGAT+GGG 0.631173 7_4:+37704022 None:intergenic
ACACTGTGGAATATATGCTA+GGG 0.645211 7_4:-37703507 Msa1152350:CDS
TTTCTTACAGTATCCCTAGG+AGG 0.647425 7_4:-37702755 Msa1152350:CDS
TCTGATATTTGCATTATGTG+TGG 0.656622 7_4:-37702702 Msa1152350:three_prime_UTR
GGACTGTAAACTGGCCCAAG+GGG 0.660504 7_4:-37705506 Msa1152350:five_prime_UTR
AAAGGATTAGTTCTTTCACG+TGG 0.671738 7_4:-37702504 Msa1152350:three_prime_UTR
TAGGCGGACATAGTATTGAG+GGG 0.695080 7_4:-37704633 Msa1152350:CDS
AACAACGTAGTATAAAGACA+TGG 0.720945 7_4:-37705370 Msa1152350:exon
GGAAGAACAAATGAACACTG+TGG 0.736237 7_4:-37703521 Msa1152350:CDS
ACGTAGGCAAGCATATAACG+TGG 0.760412 7_4:-37705532 None:intergenic
TAAGGCGGATATGATCCGAG+AGG 0.773737 7_4:+37703749 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTGTAATTATTGA+TGG - chr7_4:37703199-37703218 Msa1152350:intron 10.0%
!! TAAAATATTGACATATATAT+AGG - chr7_4:37703246-37703265 Msa1152350:intron 10.0%
!! AAAAAAATTAAATATTCAAG+AGG + chr7_4:37703446-37703465 None:intergenic 10.0%
!!! TTATATTTTTTAATCAACTT+AGG - chr7_4:37703789-37703808 Msa1152350:intron 10.0%
!!! AAATATGATTCATAATTTTT+TGG - chr7_4:37704085-37704104 Msa1152350:CDS 10.0%
!!! TTAATTTCTAACATTTTTTA+TGG - chr7_4:37704326-37704345 Msa1152350:intron 10.0%
!! TATTTAAGTCTATTATTATA+AGG + chr7_4:37704532-37704551 None:intergenic 10.0%
!! AAAAAGAAAAAAAAAAACTT+TGG - chr7_4:37705251-37705270 Msa1152350:intron 10.0%
!!! ATTTTTACTCTTTTAATAGT+TGG + chr7_4:37702977-37702996 None:intergenic 15.0%
!! AGTATAATATATGTAAGAAA+AGG - chr7_4:37703059-37703078 Msa1152350:intron 15.0%
!!! TTAACACATTAATTAGTTTT+AGG - chr7_4:37703568-37703587 Msa1152350:intron 15.0%
!! AAAAAAAAAAAAGAGTTGTT+TGG + chr7_4:37703629-37703648 None:intergenic 15.0%
!!! TTTTCTTTATATTCTTCAAT+GGG + chr7_4:37703904-37703923 None:intergenic 15.0%
!!! ATTTTCTTTATATTCTTCAA+TGG + chr7_4:37703905-37703924 None:intergenic 15.0%
!! AAGAATATAAAGAAAATATG+AGG - chr7_4:37703908-37703927 Msa1152350:intron 15.0%
!!! TTAATTTGTATACACTATTA+AGG - chr7_4:37704016-37704035 Msa1152350:CDS 15.0%
!!! ATATATTTTATAGTTGATAG+TGG - chr7_4:37704551-37704570 Msa1152350:intron 15.0%
!!! TTATTATTTTTTGTTAGAGA+TGG - chr7_4:37704953-37704972 Msa1152350:intron 15.0%
!!! ATGTATTTTGAAATAATGAA+AGG - chr7_4:37705376-37705395 Msa1152350:five_prime_UTR 15.0%
!! AATATATGCAAAAATGTACT+TGG + chr7_4:37702745-37702764 None:intergenic 20.0%
!!! GTATATTTTTTGAGTGTTTT+AGG - chr7_4:37702777-37702796 Msa1152350:CDS 20.0%
!! AATATTGACATATATATAGG+CGG - chr7_4:37703249-37703268 Msa1152350:intron 20.0%
!! CAATTATTGGAATATTCAAA+AGG + chr7_4:37703396-37703415 None:intergenic 20.0%
!! TGATTACTAATTACTCATTA+TGG - chr7_4:37703693-37703712 Msa1152350:intron 20.0%
!! ATCACAAATGTATAATTACT+TGG - chr7_4:37703719-37703738 Msa1152350:CDS 20.0%
!! AATATAACAACAAGACAAAA+TGG + chr7_4:37703776-37703795 None:intergenic 20.0%
!! GAAAATCATTATTTACCTTT+AGG + chr7_4:37703948-37703967 None:intergenic 20.0%
!! ATAAATCATAACTTATTGTG+TGG + chr7_4:37703970-37703989 None:intergenic 20.0%
!! ATTTGAAAGTTATTAATCTC+TGG - chr7_4:37704441-37704460 Msa1152350:intron 20.0%
!! AAATGTAGAAAAAGTAAATG+TGG + chr7_4:37704598-37704617 None:intergenic 20.0%
!! TTTGTATAAACAAAAGTTGA+CGG + chr7_4:37704661-37704680 None:intergenic 20.0%
!! AGCAAAATAATTTATTTGTC+TGG + chr7_4:37704863-37704882 None:intergenic 20.0%
!!! TAGTATTGAAGGAAATATTA+AGG - chr7_4:37705005-37705024 Msa1152350:intron 20.0%
!!! AGTATTGAAGGAAATATTAA+GGG - chr7_4:37705006-37705025 Msa1152350:intron 20.0%
!! GAAAGAAAATTTCAATTATG+TGG - chr7_4:37705308-37705327 Msa1152350:CDS 20.0%
! TACTACGTTGTTATCTTATT+TGG + chr7_4:37702520-37702539 None:intergenic 25.0%
! ATCAAAACTCATCTGAATTA+TGG + chr7_4:37702593-37702612 None:intergenic 25.0%
!!! ATTCAGATGAGTTTTGATAA+TGG - chr7_4:37702595-37702614 Msa1152350:three_prime_UTR 25.0%
!! TCCTACTCTATATCATTTTA+TGG - chr7_4:37702670-37702689 Msa1152350:three_prime_UTR 25.0%
! ACCATAAAATGATATAGAGT+AGG + chr7_4:37702674-37702693 None:intergenic 25.0%
! CCTCATCAATAATATATCTT+TGG + chr7_4:37702872-37702891 None:intergenic 25.0%
! CCAAAGATATATTATTGATG+AGG - chr7_4:37702869-37702888 Msa1152350:CDS 25.0%
!!! ACTAAGAGTTATTTTCTTGT+TGG - chr7_4:37703019-37703038 Msa1152350:intron 25.0%
! GTAAGAAAAGGAGAAATTTA+AGG - chr7_4:37703071-37703090 Msa1152350:intron 25.0%
! AGAATCTATTAGATACCTTA+GGG + chr7_4:37703342-37703361 None:intergenic 25.0%
! TAGAATCTATTAGATACCTT+AGG + chr7_4:37703343-37703362 None:intergenic 25.0%
! AGGTATCTAATAGATTCTAA+TGG - chr7_4:37703344-37703363 Msa1152350:intron 25.0%
!! TATCCTTTTGAATATTCCAT+TGG - chr7_4:37703367-37703386 Msa1152350:intron 25.0%
!! ATCCTTTTGAATATTCCATT+GGG - chr7_4:37703368-37703387 Msa1152350:intron 25.0%
! AATATTCAAGAGGATAACAA+TGG + chr7_4:37703436-37703455 None:intergenic 25.0%
! AAGTAGATAATTACCAATGA+TGG + chr7_4:37703829-37703848 None:intergenic 25.0%
!! TCATTGGTAATTATCTACTT+TGG - chr7_4:37703829-37703848 Msa1152350:intron 25.0%
! TACAAATCAAGAAAAAACTC+AGG - chr7_4:37704202-37704221 Msa1152350:intron 25.0%
!!! TTCTAACATTTTTTATGGCT+TGG - chr7_4:37704331-37704350 Msa1152350:intron 25.0%
! AATGTTAAGGAAATAACTGT+AGG + chr7_4:37704628-37704647 None:intergenic 25.0%
! TAATTTATTTGTCTGGTTGT+AGG + chr7_4:37704856-37704875 None:intergenic 25.0%
! ACTGTAAGAAACATTTATAG+TGG + chr7_4:37705134-37705153 None:intergenic 25.0%
!!! CTTTTTCAATTATTGCTTCA+TGG + chr7_4:37705237-37705256 None:intergenic 25.0%
GGAATCACAATTTATAGATG+TGG + chr7_4:37702446-37702465 None:intergenic 30.0%
TGTTGCACTATGTATCATAT+TGG + chr7_4:37702467-37702486 None:intergenic 30.0%
AACAACGTAGTATAAAGACA+TGG - chr7_4:37702528-37702547 Msa1152350:three_prime_UTR 30.0%
AAAACTCATCTGAATTATGG+AGG + chr7_4:37702590-37702609 None:intergenic 30.0%
! AGCTAATTTGTATGCTAGAA+AGG - chr7_4:37702636-37702655 Msa1152350:three_prime_UTR 30.0%
AGTAGGTAAGAATCAAAATC+TGG + chr7_4:37702896-37702915 None:intergenic 30.0%
CAATTCAGCTTCATTATACT+TGG + chr7_4:37702953-37702972 None:intergenic 30.0%
! ATAAGTCTTTGAGCACTTTT+CGG - chr7_4:37703136-37703155 Msa1152350:intron 30.0%
AACCCAATGGAATATTCAAA+AGG + chr7_4:37703373-37703392 None:intergenic 30.0%
AATATTCAAAAGGAACCCAA+TGG + chr7_4:37703386-37703405 None:intergenic 30.0%
CCAGCTAGCATTAATATTTA+TGG + chr7_4:37703474-37703493 None:intergenic 30.0%
CCATAAATATTAATGCTAGC+TGG - chr7_4:37703471-37703490 Msa1152350:CDS 30.0%
AGATAATTACCAATGATGGT+TGG + chr7_4:37703825-37703844 None:intergenic 30.0%
! TTGGTAATTATCTACTTTGG+TGG - chr7_4:37703832-37703851 Msa1152350:intron 30.0%
!! TTGATTTGTACTTCACTGAT+GGG + chr7_4:37704192-37704211 None:intergenic 30.0%
GTAAGAAACATTTATAGTGG+TGG + chr7_4:37705131-37705150 None:intergenic 30.0%
TCTGATATTTGCATTATGTG+TGG - chr7_4:37705196-37705215 Msa1152350:intron 30.0%
TGAAAAGTAAGTCACAGAAT+GGG - chr7_4:37705339-37705358 Msa1152350:CDS 30.0%
! TTCCTTATCTTTTTCCTTTG+AGG - chr7_4:37705423-37705442 Msa1152350:five_prime_UTR 30.0%
!! TGATTATTTTTCTGCCCCTT+GGG + chr7_4:37702409-37702428 None:intergenic 35.0%
!! TTGATTATTTTTCTGCCCCT+TGG + chr7_4:37702410-37702429 None:intergenic 35.0%
!!! CAGATGAGTTTTGATAATGG+TGG - chr7_4:37702598-37702617 Msa1152350:three_prime_UTR 35.0%
!!! TGAGTTTTGATAATGGTGGT+TGG - chr7_4:37702602-37702621 Msa1152350:three_prime_UTR 35.0%
!!! GAGTTTTGATAATGGTGGTT+GGG - chr7_4:37702603-37702622 Msa1152350:three_prime_UTR 35.0%
!!! AGTTTTGATAATGGTGGTTG+GGG - chr7_4:37702604-37702623 Msa1152350:three_prime_UTR 35.0%
ATAGTGAAACTTATCCTCCA+AGG - chr7_4:37702819-37702838 Msa1152350:CDS 35.0%
GATACCATTGGATTATACCT+TGG + chr7_4:37702839-37702858 None:intergenic 35.0%
!!! GTTGGAGAATTTTTTGCAGT+AGG + chr7_4:37702913-37702932 None:intergenic 35.0%
! GTGATTAGTTAGTTAGAGGT+TGG + chr7_4:37702931-37702950 None:intergenic 35.0%
! CTTGGTGATTAGTTAGTTAG+AGG + chr7_4:37702935-37702954 None:intergenic 35.0%
! ATAGTATTGAGGGGATATTC+TGG - chr7_4:37703274-37703293 Msa1152350:intron 35.0%
! TCTTGATGAAGTTTTCCCTA+AGG - chr7_4:37703324-37703343 Msa1152350:intron 35.0%
GCAATGTCTACACATCTAAA+TGG - chr7_4:37703516-37703535 Msa1152350:CDS 35.0%
TATTCTTCAATGGGAACATG+AGG + chr7_4:37703895-37703914 None:intergenic 35.0%
GAAGATTGCTAACTACCTAA+AGG - chr7_4:37703930-37703949 Msa1152350:intron 35.0%
!! CTTGATTTGTACTTCACTGA+TGG + chr7_4:37704193-37704212 None:intergenic 35.0%
CAAGAAAAAACTCAGGTTCA+TGG - chr7_4:37704209-37704228 Msa1152350:intron 35.0%
AACACTGTGGAATATATGCT+AGG - chr7_4:37704390-37704409 Msa1152350:intron 35.0%
ACACTGTGGAATATATGCTA+GGG - chr7_4:37704391-37704410 Msa1152350:intron 35.0%
ATCAACGAAGTTGAGTCTAA+CGG - chr7_4:37704818-37704837 Msa1152350:intron 35.0%
ATTGGAAACCAAGTTTGCAT+TGG - chr7_4:37705044-37705063 Msa1152350:intron 35.0%
GAATCTTCTGCATATTCAGT+TGG + chr7_4:37705079-37705098 None:intergenic 35.0%
ATGTTTCTTACAGTATCCCT+AGG - chr7_4:37705140-37705159 Msa1152350:intron 35.0%
TATTTGCATTATGTGTGGTG+TGG - chr7_4:37705201-37705220 Msa1152350:intron 35.0%
!! CTGTGACTTACTTTTCACAA+GGG + chr7_4:37705336-37705355 None:intergenic 35.0%
!! TCTGTGACTTACTTTTCACA+AGG + chr7_4:37705337-37705356 None:intergenic 35.0%
GTGAAAAGTAAGTCACAGAA+TGG - chr7_4:37705338-37705357 Msa1152350:CDS 35.0%
!! AAAGGATTAGTTCTTTCACG+TGG - chr7_4:37705394-37705413 Msa1152350:five_prime_UTR 35.0%
CTCCTCAAAGGAAAAAGATA+AGG + chr7_4:37705428-37705447 None:intergenic 35.0%
AAAATCAAAACGCTCCTCAA+AGG + chr7_4:37705440-37705459 None:intergenic 35.0%
GATACATAGTGCAACATCTC+AGG - chr7_4:37702471-37702490 Msa1152350:three_prime_UTR 40.0%
ACGTAGTATAAAGACATGGC+AGG - chr7_4:37702532-37702551 Msa1152350:three_prime_UTR 40.0%
! AGACCTCAAATCGTGCTATT+TGG - chr7_4:37702562-37702581 Msa1152350:three_prime_UTR 40.0%
TCCTCCAAGGTATAATCCAA+TGG - chr7_4:37702832-37702851 Msa1152350:CDS 40.0%
ACCATTGGATTATACCTTGG+AGG + chr7_4:37702836-37702855 None:intergenic 40.0%
TATAGGCGGACATAGTATTG+AGG - chr7_4:37703263-37703282 Msa1152350:intron 40.0%
! ATAGGCGGACATAGTATTGA+GGG - chr7_4:37703264-37703283 Msa1152350:intron 40.0%
TATTGAGGGGATATTCTGGA+TGG - chr7_4:37703278-37703297 Msa1152350:intron 40.0%
ATGGAATTCAAGACGTGCTT+TGG - chr7_4:37703297-37703316 Msa1152350:intron 40.0%
TGCTTATGTCCAACCATCAT+TGG - chr7_4:37703813-37703832 Msa1152350:intron 40.0%
GAGAGGTGAGAAATATAAGG+CGG + chr7_4:37704167-37704186 None:intergenic 40.0%
GAGGAGAGGTGAGAAATATA+AGG + chr7_4:37704170-37704189 None:intergenic 40.0%
ATTTGTACTTCACTGATGGG+AGG + chr7_4:37704189-37704208 None:intergenic 40.0%
GGAAGAACAAATGAACACTG+TGG - chr7_4:37704377-37704396 Msa1152350:intron 40.0%
CGGCAGATTTGGAAATGTTA+AGG + chr7_4:37704641-37704660 None:intergenic 40.0%
ACAAAAGTTGACGGCAGATT+TGG + chr7_4:37704652-37704671 None:intergenic 40.0%
! AGGAAGCAAGGTAGTATTGA+AGG - chr7_4:37704994-37705013 Msa1152350:intron 40.0%
GTTTCCAATCTGCTTCTCTA+AGG + chr7_4:37705033-37705052 None:intergenic 40.0%
AGTGACATCCAATGCAAACT+TGG + chr7_4:37705055-37705074 None:intergenic 40.0%
TTTCTTACAGTATCCCTAGG+AGG - chr7_4:37705143-37705162 Msa1152350:intron 40.0%
AGGAGTAGTGTTTGAGTGAG+AGG - chr7_4:37702491-37702510 Msa1152350:three_prime_UTR 45.0%
GGAGTAGTGTTTGAGTGAGA+GGG - chr7_4:37702492-37702511 Msa1152350:three_prime_UTR 45.0%
! AGCACGATTTGAGGTCTCAT+TGG + chr7_4:37702559-37702578 None:intergenic 45.0%
GAGCCAAATAGCACGATTTG+AGG + chr7_4:37702568-37702587 None:intergenic 45.0%
GGCGTTTCAAACGATACCAT+TGG + chr7_4:37702851-37702870 None:intergenic 45.0%
! TAGGCGGACATAGTATTGAG+GGG - chr7_4:37703265-37703284 Msa1152350:intron 45.0%
GAATTCAAGACGTGCTTTGG+AGG - chr7_4:37703300-37703319 Msa1152350:intron 45.0%
! CAATGCTTTTCAGAGCCTCT+CGG - chr7_4:37704134-37704153 Msa1152350:intron 45.0%
TGGAATATATGCTAGGGCAC+TGG - chr7_4:37704397-37704416 Msa1152350:intron 45.0%
!! AATATATGCTAGGGCACTGG+TGG - chr7_4:37704400-37704419 Msa1152350:intron 45.0%
TAATCTCTGGTCTGCAATCC+AGG - chr7_4:37704454-37704473 Msa1152350:intron 45.0%
ATGCCACGTAGATGTGAGTT+GGG + chr7_4:37704734-37704753 None:intergenic 45.0%
AATGCCACGTAGATGTGAGT+TGG + chr7_4:37704735-37704754 None:intergenic 45.0%
ACGAAGTTGAGTCTAACGGA+AGG - chr7_4:37704822-37704841 Msa1152350:intron 45.0%
GGAGTTCATTTGTCAGCTGA+AGG - chr7_4:37704974-37704993 Msa1152350:intron 45.0%
TTTGTCAGCTGAAGGAAGCA+AGG - chr7_4:37704982-37705001 Msa1152350:intron 45.0%
TCTGCACTTGGAGGGTAATA+TGG + chr7_4:37705103-37705122 None:intergenic 45.0%
TATTACCCTCCAAGTGCAGA+TGG - chr7_4:37705103-37705122 Msa1152350:intron 45.0%
!! TTAAAATAAAAAACAATTAT+TGG + chr7_4:37703409-37703428 None:intergenic 5.0%
ACGTGGCAAGGACTGTAAAC+TGG - chr7_4:37702383-37702402 Msa1152350:three_prime_UTR 50.0%
AAGGACTGTAAACTGGCCCA+AGG - chr7_4:37702390-37702409 Msa1152350:three_prime_UTR 50.0%
AGGACTGTAAACTGGCCCAA+GGG - chr7_4:37702391-37702410 Msa1152350:three_prime_UTR 50.0%
CATGAGGACCAAGACCAGAT+GGG + chr7_4:37703879-37703898 None:intergenic 50.0%
ACATGAGGACCAAGACCAGA+TGG + chr7_4:37703880-37703899 None:intergenic 50.0%
TAAGGCGGATATGATCCGAG+AGG + chr7_4:37704152-37704171 None:intergenic 50.0%
TACTTCACTGATGGGAGGAG+AGG + chr7_4:37704184-37704203 None:intergenic 50.0%
TCTTCCAGTCTGTGTTGCAC+TGG + chr7_4:37704363-37704382 None:intergenic 50.0%
TCTGGTCTGCAATCCAGGAA+AGG - chr7_4:37704459-37704478 Msa1152350:intron 50.0%
CTGGTCTGCAATCCAGGAAA+GGG - chr7_4:37704460-37704479 Msa1152350:intron 50.0%
TGCCACGTAGATGTGAGTTG+GGG + chr7_4:37704733-37704752 None:intergenic 50.0%
GGGTCCTTAGAGAAGCAGAT+TGG - chr7_4:37705026-37705045 Msa1152350:intron 50.0%
TGGTTCCATCTGCACTTGGA+GGG + chr7_4:37705111-37705130 None:intergenic 50.0%
!! TCCCTAGGAGGCATTTGCAA+TGG - chr7_4:37705155-37705174 Msa1152350:intron 50.0%
CCCATTGCAAATGCCTCCTA+GGG + chr7_4:37705159-37705178 None:intergenic 50.0%
!! CCCTAGGAGGCATTTGCAAT+GGG - chr7_4:37705156-37705175 Msa1152350:intron 50.0%
TCCCATTGCAAATGCCTCCT+AGG + chr7_4:37705160-37705179 None:intergenic 50.0%
GGACTGTAAACTGGCCCAAG+GGG - chr7_4:37702392-37702411 Msa1152350:three_prime_UTR 55.0%
TCAATTCACCCCCACCCATC+TGG - chr7_4:37703862-37703881 Msa1152350:intron 55.0%
AGGACCAAGACCAGATGGGT+GGG + chr7_4:37703875-37703894 None:intergenic 55.0%
GAGTCCAGTGCAACACAGAC+TGG - chr7_4:37704356-37704375 Msa1152350:intron 55.0%
GTCTGCAATCCAGGAAAGGG+AGG - chr7_4:37704463-37704482 Msa1152350:intron 55.0%
CAATCCAGGAAAGGGAGGAC+TGG - chr7_4:37704468-37704487 Msa1152350:intron 55.0%
CTAACCAGTCCTCCCTTTCC+TGG + chr7_4:37704475-37704494 None:intergenic 55.0%
! GATGTGAGTTGGGGTCTACG+TGG + chr7_4:37704724-37704743 None:intergenic 55.0%
GACCCCAACTCACATCTACG+TGG - chr7_4:37704728-37704747 Msa1152350:intron 55.0%
GTGGTTCCATCTGCACTTGG+AGG + chr7_4:37705112-37705131 None:intergenic 55.0%
GTGGTGGTTCCATCTGCACT+TGG + chr7_4:37705115-37705134 None:intergenic 55.0%
GACCAAGACCAGATGGGTGG+GGG + chr7_4:37703873-37703892 None:intergenic 60.0%
GGACCAAGACCAGATGGGTG+GGG + chr7_4:37703874-37703893 None:intergenic 60.0%
GAGGACCAAGACCAGATGGG+TGG + chr7_4:37703876-37703895 None:intergenic 60.0%
CACCCCCACCCATCTGGTCT+TGG - chr7_4:37703868-37703887 Msa1152350:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 37702373 37705547 37702373 ID=Msa1152350;Name=Msa1152350
chr7_4 mRNA 37702373 37705547 37702373 ID=Msa1152350-mRNA-1;Parent=Msa1152350;Name=Msa1152350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=174|1|1|1|1|1|6|361|255
chr7_4 exon 37702373 37702950 37702373 ID=Msa1152350-mRNA-1:exon:9025;Parent=Msa1152350-mRNA-1
chr7_4 exon 37703413 37703556 37703413 ID=Msa1152350-mRNA-1:exon:9024;Parent=Msa1152350-mRNA-1
chr7_4 exon 37703697 37703773 37703697 ID=Msa1152350-mRNA-1:exon:9023;Parent=Msa1152350-mRNA-1
chr7_4 exon 37703969 37704109 37703969 ID=Msa1152350-mRNA-1:exon:9022;Parent=Msa1152350-mRNA-1
chr7_4 exon 37704575 37704652 37704575 ID=Msa1152350-mRNA-1:exon:9021;Parent=Msa1152350-mRNA-1
chr7_4 exon 37705263 37705547 37705263 ID=Msa1152350-mRNA-1:exon:9020;Parent=Msa1152350-mRNA-1
chr7_4 five_prime_UTR 37705374 37705547 37705374 ID=Msa1152350-mRNA-1:five_prime_utr;Parent=Msa1152350-mRNA-1
chr7_4 CDS 37705263 37705373 37705263 ID=Msa1152350-mRNA-1:cds;Parent=Msa1152350-mRNA-1
chr7_4 CDS 37704575 37704652 37704575 ID=Msa1152350-mRNA-1:cds;Parent=Msa1152350-mRNA-1
chr7_4 CDS 37703969 37704109 37703969 ID=Msa1152350-mRNA-1:cds;Parent=Msa1152350-mRNA-1
chr7_4 CDS 37703697 37703773 37703697 ID=Msa1152350-mRNA-1:cds;Parent=Msa1152350-mRNA-1
chr7_4 CDS 37703413 37703556 37703413 ID=Msa1152350-mRNA-1:cds;Parent=Msa1152350-mRNA-1
chr7_4 CDS 37702734 37702950 37702734 ID=Msa1152350-mRNA-1:cds;Parent=Msa1152350-mRNA-1
chr7_4 three_prime_UTR 37702373 37702733 37702373 ID=Msa1152350-mRNA-1:three_prime_utr;Parent=Msa1152350-mRNA-1
Gene Sequence

>Msa1152350

ATGGCAGGACCAATGAGACCTCAAATCGTGCTATTTGGCTCCTCCATAATTCAGATGAGTTTTGATAATGGTGGTTGGGGTGCTATTCTAGCTAATTTGTATGCTAGAAAGGCGGACATAGTATTGAGGGGATATTCTGGATGGAATTCAAGACGTGCTTTGGAGGTTCTTGATGAAGTTTTCCCTAAGGATGCTTATGTCCAACCATCATTGGTAATTATCTACTTTGGTGGAAATGATTCAATTCACCCCCACCCATCTGGTCTTGGTCCTCATGTTCCCATTGAAGAATATAAAGAAAATATGAGGAAGATTGCTAACTACCTAAAGAGCCTCTCGGATCATATCCGCCTTATATTTCTCACCTCTCCTCCCATCAGTGAAGTACAAATCAAGAAAAAACTCAGTGCAACACAGACTGGAAGAACAAATGAACACTGTGGAATATATGCTAGGGCACTGGTGGAACTATGTGATGAGATGAATTTGAAAGTTATTAATCTCTGGTCTGCAATCCAGGAAAGGGAGGACTGGTTAGATGTCAGCTTTACAGATGGAGTTCATTTGTCAGCTGAAGGAAGCAAGGTAGTATTGAAGGAAATATTAAGGGTCCTTAGAGAAGCAGATTGGAAACCAAGTTTGCATTGGATGTCACTACCAACTGAATATGCAGAAGATTCACCATATTACCCTCCAAGTGCAGATGGAACCACCACTATAAATGTTTCTTACAGTATCCCTAGGAGGCATTTGCAATGGGATTTATAA
Protein sequence

>Msa1152350

MAGPMRPQIVLFGSSIIQMSFDNGGWGAILANLYARKADIVLRGYSGWNSRRALEVLDEVFPKDAYVQPSLVIIYFGGNDSIHPHPSGLGPHVPIEEYKENMRKIANYLKSLSDHIRLIFLTSPPISEVQIKKKLSATQTGRTNEHCGIYARALVELCDEMNLKVINLWSAIQEREDWLDVSFTDGVHLSAEGSKVVLKEILRVLREADWKPSLHWMSLPTEYAEDSPYYPPSADGTTTINVSYSIPRRHLQWDL*